Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene74528.t1 | XP_003594548.2 | 95.9 | 412 | 17 | 0 | 1 | 412 | 1 | 412 | 5.20E-241 | 843.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene74528.t1 | G7IKW8 | 95.9 | 412 | 17 | 0 | 1 | 412 | 1 | 412 | 3.7e-241 | 843.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene05079 | MS.gene74528 | 0.80996 | 1.46E-50 | -1.69E-46 |
| MS.gene051138 | MS.gene74528 | 0.801792 | 7.62E-49 | -1.69E-46 |
| MS.gene056856 | MS.gene74528 | 0.806144 | 9.49E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene74528.t1 | MTR_2g030460 | 95.874 | 412 | 17 | 0 | 1 | 412 | 1 | 412 | 0.0 | 824 |
| MS.gene74528.t1 | MTR_2g030460 | 96.707 | 334 | 11 | 0 | 1 | 334 | 1 | 334 | 0.0 | 671 |
| MS.gene74528.t1 | MTR_1g052640 | 68.523 | 413 | 128 | 2 | 1 | 412 | 1 | 412 | 0.0 | 610 |
| MS.gene74528.t1 | MTR_2g030470 | 68.370 | 411 | 129 | 1 | 2 | 412 | 5 | 414 | 0.0 | 606 |
| MS.gene74528.t1 | MTR_2g030470 | 66.667 | 408 | 135 | 1 | 1 | 408 | 416 | 822 | 0.0 | 582 |
| MS.gene74528.t1 | MTR_0083s0100 | 68.039 | 413 | 130 | 2 | 1 | 412 | 1 | 412 | 0.0 | 588 |
| MS.gene74528.t1 | MTR_2g030480 | 62.864 | 412 | 132 | 2 | 1 | 412 | 1 | 391 | 0.0 | 548 |
| MS.gene74528.t1 | MTR_4g094550 | 60.952 | 420 | 153 | 5 | 1 | 412 | 1 | 417 | 0.0 | 543 |
| MS.gene74528.t1 | MTR_6g048350 | 59.524 | 420 | 158 | 5 | 1 | 412 | 1 | 416 | 0.0 | 542 |
| MS.gene74528.t1 | MTR_4g094548 | 58.432 | 421 | 163 | 3 | 1 | 412 | 1 | 418 | 0.0 | 536 |
| MS.gene74528.t1 | MTR_4g094560 | 59.951 | 412 | 159 | 4 | 1 | 412 | 1 | 406 | 0.0 | 535 |
| MS.gene74528.t1 | MTR_4g094555 | 57.957 | 421 | 163 | 4 | 1 | 412 | 1 | 416 | 0.0 | 530 |
| MS.gene74528.t1 | MTR_4g094570 | 57.524 | 412 | 165 | 3 | 9 | 412 | 7 | 416 | 0.0 | 528 |
| MS.gene74528.t1 | MTR_4g094562 | 59.564 | 413 | 155 | 4 | 1 | 405 | 1 | 409 | 0.0 | 525 |
| MS.gene74528.t1 | MTR_6g048310 | 59.950 | 397 | 146 | 5 | 23 | 412 | 20 | 410 | 0.0 | 518 |
| MS.gene74528.t1 | MTR_1g052640 | 66.959 | 342 | 111 | 2 | 1 | 341 | 1 | 341 | 3.35e-175 | 493 |
| MS.gene74528.t1 | MTR_1g052640 | 67.361 | 288 | 92 | 2 | 1 | 287 | 1 | 287 | 2.19e-147 | 420 |
| MS.gene74528.t1 | MTR_6g089930 | 43.735 | 423 | 208 | 9 | 1 | 409 | 1 | 407 | 3.44e-128 | 376 |
| MS.gene74528.t1 | MTR_4g094565 | 46.602 | 412 | 143 | 6 | 1 | 412 | 1 | 335 | 2.55e-127 | 371 |
| MS.gene74528.t1 | MTR_8g039300 | 43.262 | 423 | 210 | 9 | 1 | 409 | 1 | 407 | 8.91e-127 | 372 |
| MS.gene74528.t1 | MTR_6g090090 | 43.735 | 423 | 198 | 8 | 1 | 409 | 27 | 423 | 2.35e-126 | 372 |
| MS.gene74528.t1 | MTR_4g094562 | 55.369 | 298 | 121 | 4 | 1 | 290 | 1 | 294 | 9.47e-121 | 353 |
| MS.gene74528.t1 | MTR_3g035040 | 42.553 | 423 | 213 | 9 | 1 | 409 | 1 | 407 | 9.65e-121 | 357 |
| MS.gene74528.t1 | MTR_1g035220 | 42.785 | 395 | 174 | 11 | 1 | 380 | 1 | 358 | 6.13e-105 | 315 |
| MS.gene74528.t1 | MTR_4g094565 | 52.083 | 288 | 114 | 5 | 1 | 288 | 1 | 264 | 6.69e-104 | 310 |
| MS.gene74528.t1 | MTR_1g062750 | 46.414 | 237 | 109 | 4 | 61 | 283 | 2 | 234 | 3.88e-71 | 224 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene74528.t1 | AT5G61820 | 50.478 | 418 | 177 | 7 | 14 | 409 | 11 | 420 | 8.41e-145 | 421 |
| MS.gene74528.t1 | AT5G61820 | 50.478 | 418 | 177 | 7 | 14 | 409 | 11 | 420 | 8.41e-145 | 421 |
Find 99 sgRNAs with CRISPR-Local
Find 139 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCATTCCAGTTCCATATTT+TGG | 0.072146 | 2.3:+59417900 | None:intergenic |
| CCTAAACCTCCTTTGTAATT+TGG | 0.119485 | 2.3:+59418826 | None:intergenic |
| CCTTTGTAATTTGGACTTAA+AGG | 0.120999 | 2.3:+59418835 | None:intergenic |
| CCTGGACTTAATTCAATCTT+AGG | 0.232069 | 2.3:+59419315 | None:intergenic |
| AATGGGACATTTCTATTTCT+TGG | 0.240338 | 2.3:-59417745 | MS.gene74528:CDS |
| GCTGAACTAGTAGATGAATA+TGG | 0.253004 | 2.3:-59419222 | MS.gene74528:CDS |
| CCAAATTACAAAGGAGGTTT+AGG | 0.264358 | 2.3:-59418826 | MS.gene74528:CDS |
| ATTATTATGGTGAGAAATAA+TGG | 0.269974 | 2.3:-59419105 | MS.gene74528:CDS |
| ACTACCATTCCCATGGCTTT+TGG | 0.289841 | 2.3:+59418482 | None:intergenic |
| AGATTAAATGTCACATATTA+TGG | 0.290947 | 2.3:+59417703 | None:intergenic |
| AATGGTGAAGATAAGTTTCT+TGG | 0.294271 | 2.3:+59419184 | None:intergenic |
| CCCACATAATTGTGTACTTT+AGG | 0.295452 | 2.3:+59418737 | None:intergenic |
| TGCAACTCAATCCCAAAATA+TGG | 0.295691 | 2.3:-59417912 | MS.gene74528:CDS |
| ACATATATTCCTGACCCTTA+TGG | 0.320031 | 2.3:-59419018 | MS.gene74528:CDS |
| CTCAAGATTGGATGCTTTCA+TGG | 0.320835 | 2.3:-59419434 | MS.gene74528:CDS |
| GACCCTTATGGAGTAGAAAT+TGG | 0.321397 | 2.3:-59419006 | MS.gene74528:CDS |
| ATCTTGATAGAACCTGGTTT+AGG | 0.327289 | 2.3:+59417831 | None:intergenic |
| TTATGCCAAGATGATATTCT+TGG | 0.334835 | 2.3:-59419081 | MS.gene74528:CDS |
| TCTTGATAGAACCTGGTTTA+GGG | 0.341330 | 2.3:+59417832 | None:intergenic |
| AATCTACATTGACCATTATC+AGG | 0.346043 | 2.3:+59418796 | None:intergenic |
| CATTTATTGTAACGTTATAT+AGG | 0.358741 | 2.3:+59418872 | None:intergenic |
| ACACAATTATGTGGGTTGAT+TGG | 0.359043 | 2.3:-59418729 | MS.gene74528:CDS |
| TCAAGTAAGTAAATCTTAAC+TGG | 0.369070 | 2.3:+59418691 | None:intergenic |
| GCGATTAGATCAACCCTATA+TGG | 0.370275 | 2.3:-59418375 | MS.gene74528:CDS |
| TTAGGATGTTGTCCTGATAA+TGG | 0.372817 | 2.3:-59418808 | MS.gene74528:CDS |
| TAACCAAACAGATATTATTA+TGG | 0.372909 | 2.3:-59419118 | MS.gene74528:CDS |
| GATATTCTTGGACAATACTA+TGG | 0.376133 | 2.3:-59419069 | MS.gene74528:CDS |
| CACAATTATGTGGGTTGATT+GGG | 0.382907 | 2.3:-59418728 | MS.gene74528:CDS |
| TTACCAATTTCTACTCCATA+AGG | 0.383266 | 2.3:+59419003 | None:intergenic |
| CTTGGACAATACTATGGCCT+TGG | 0.391717 | 2.3:-59419063 | MS.gene74528:CDS |
| AATTTGTTTGAAATTGATCC+TGG | 0.396040 | 2.3:+59419297 | None:intergenic |
| TCACCATAATAATATCTGTT+TGG | 0.399279 | 2.3:+59419115 | None:intergenic |
| CATAATGCACACCGGTGTAA+TGG | 0.410797 | 2.3:-59417763 | MS.gene74528:CDS |
| GGTTCTATCAAGATATTTGA+TGG | 0.412273 | 2.3:-59417822 | MS.gene74528:CDS |
| ACCTAAAGTACACAATTATG+TGG | 0.432101 | 2.3:-59418738 | MS.gene74528:CDS |
| AATGAGAAAGGGTATCTTGT+AGG | 0.436332 | 2.3:-59417870 | MS.gene74528:CDS |
| ATGACATACCTGTCCATATA+GGG | 0.438172 | 2.3:+59418362 | None:intergenic |
| ATAATGCACACCGGTGTAAT+GGG | 0.442600 | 2.3:-59417762 | MS.gene74528:CDS |
| TTGAGTGCAATATGACCCTT+TGG | 0.444188 | 2.3:+59419255 | None:intergenic |
| AAGGGGTGTGGAAGATAGAA+TGG | 0.449147 | 2.3:-59418917 | MS.gene74528:CDS |
| ATGTTTGATGCTCATTCCAT+TGG | 0.452261 | 2.3:+59418636 | None:intergenic |
| TCAATCCCAAAATATGGAAC+TGG | 0.455772 | 2.3:-59417906 | MS.gene74528:CDS |
| CATGACATACCTGTCCATAT+AGG | 0.458282 | 2.3:+59418361 | None:intergenic |
| ATCCTTCACAAATTCCTAAA+GGG | 0.463218 | 2.3:-59418981 | MS.gene74528:CDS |
| AAGAAACTTATCTTCACCAT+TGG | 0.467809 | 2.3:-59419182 | MS.gene74528:CDS |
| CTGAACTAGTAGATGAATAT+GGG | 0.470249 | 2.3:-59419221 | MS.gene74528:CDS |
| AATCCTTCACAAATTCCTAA+AGG | 0.481001 | 2.3:-59418982 | MS.gene74528:CDS |
| TACCAATTTCTACTCCATAA+GGG | 0.483211 | 2.3:+59419004 | None:intergenic |
| TGTTTGATGCTCATTCCATT+GGG | 0.484253 | 2.3:+59418637 | None:intergenic |
| AGGGGTGTGGAAGATAGAAT+GGG | 0.489368 | 2.3:-59418916 | MS.gene74528:CDS |
| GTTACAATAAATGCATTAAG+TGG | 0.500168 | 2.3:-59418862 | MS.gene74528:CDS |
| GGCATTAATGTTAGGATGGG+AGG | 0.502702 | 2.3:-59417941 | MS.gene74528:intron |
| CCTAAGATTGAATTAAGTCC+AGG | 0.504942 | 2.3:-59419315 | MS.gene74528:CDS |
| ATTTCTACTCCATAAGGGTC+AGG | 0.506350 | 2.3:+59419009 | None:intergenic |
| ATTGTCCAAGAATATCATCT+TGG | 0.520826 | 2.3:+59419076 | None:intergenic |
| ATGTCCATGCAATTGATACA+AGG | 0.523091 | 2.3:-59418936 | MS.gene74528:CDS |
| TAATTGTGTACTTTAGGTAA+AGG | 0.526319 | 2.3:+59418743 | None:intergenic |
| TATGATGTTGAATTTCCAAA+GGG | 0.528720 | 2.3:-59419270 | MS.gene74528:CDS |
| TCAAGATTGGATGCTTTCAT+GGG | 0.528759 | 2.3:-59419433 | MS.gene74528:CDS |
| ATGGAAGCAGGAAATGAGAA+AGG | 0.530156 | 2.3:-59417882 | MS.gene74528:CDS |
| AAAAGCCATGGGAATGGTAG+TGG | 0.532477 | 2.3:-59418480 | MS.gene74528:CDS |
| TGCAATTGATACAAGGGGTG+TGG | 0.533630 | 2.3:-59418929 | MS.gene74528:CDS |
| CCCAAAATATGGAACTGGAA+TGG | 0.534405 | 2.3:-59417901 | MS.gene74528:CDS |
| TATGGAACTGGAATGGAAGC+AGG | 0.536281 | 2.3:-59417894 | MS.gene74528:CDS |
| TGCCTCTAGTTTCAGCTCCA+AGG | 0.544329 | 2.3:+59419046 | None:intergenic |
| CACCCCTTGTATCAATTGCA+TGG | 0.547570 | 2.3:+59418932 | None:intergenic |
| GGGACATTTCTATTTCTTGG+TGG | 0.548487 | 2.3:-59417742 | MS.gene74528:CDS |
| TAGATCAACCCTATATGGAC+AGG | 0.548766 | 2.3:-59418370 | MS.gene74528:intron |
| TCAAATATCTTGATAGAACC+TGG | 0.548862 | 2.3:+59417825 | None:intergenic |
| GGTTATATAATCTACAGTGC+TGG | 0.556126 | 2.3:-59418414 | MS.gene74528:CDS |
| TTATGATGTTGAATTTCCAA+AGG | 0.557376 | 2.3:-59419271 | MS.gene74528:CDS |
| ACAAGTGTCCCAATAAAAGC+TGG | 0.561803 | 2.3:-59418438 | MS.gene74528:CDS |
| AAACGTTGCACCAAAAGCCA+TGG | 0.562734 | 2.3:-59418492 | MS.gene74528:CDS |
| AAAATATCATATAATCCCAA+TGG | 0.565537 | 2.3:-59418652 | MS.gene74528:CDS |
| ATAATGGTCAATGTAGATTG+AGG | 0.569226 | 2.3:-59418792 | MS.gene74528:CDS |
| TTAAGTCCAAATTACAAAGG+AGG | 0.571780 | 2.3:-59418832 | MS.gene74528:CDS |
| GCATTAATGTTAGGATGGGA+GGG | 0.573100 | 2.3:-59417940 | MS.gene74528:intron |
| TGCACCAAAAGCCATGGGAA+TGG | 0.582420 | 2.3:-59418486 | MS.gene74528:CDS |
| CCTAAAGTACACAATTATGT+GGG | 0.583692 | 2.3:-59418737 | MS.gene74528:CDS |
| GGCAATCTTAGTGCTAGTGT+TGG | 0.593029 | 2.3:-59419412 | MS.gene74528:CDS |
| TACCCTTTAGGAATTTGTGA+AGG | 0.593512 | 2.3:+59418979 | None:intergenic |
| TGGAAGCAGGAAATGAGAAA+GGG | 0.595316 | 2.3:-59417881 | MS.gene74528:CDS |
| AACGTTGCACCAAAAGCCAT+GGG | 0.602557 | 2.3:-59418491 | MS.gene74528:CDS |
| GAGCATCAAACATAATTGCA+AGG | 0.603328 | 2.3:-59418626 | MS.gene74528:intron |
| TGAAGATAAGTTTCTTGGAG+AGG | 0.609861 | 2.3:+59419189 | None:intergenic |
| TGTCCATGCAATTGATACAA+GGG | 0.611124 | 2.3:-59418935 | MS.gene74528:CDS |
| GGCCTTGGAGCTGAAACTAG+AGG | 0.615056 | 2.3:-59419048 | MS.gene74528:CDS |
| CTGTTGGTAGCTAATAAGCA+TGG | 0.615939 | 2.3:+59419378 | None:intergenic |
| GGTCAATGTAGATTGAGGAA+AGG | 0.621157 | 2.3:-59418787 | MS.gene74528:CDS |
| CACAACCACTACCATTCCCA+TGG | 0.624715 | 2.3:+59418475 | None:intergenic |
| AGTGCTGGTCATCAACATGT+AGG | 0.634573 | 2.3:-59418399 | MS.gene74528:CDS |
| GTCCATGCAATTGATACAAG+GGG | 0.639292 | 2.3:-59418934 | MS.gene74528:CDS |
| CCTTTAAGTCCAAATTACAA+AGG | 0.642182 | 2.3:-59418835 | MS.gene74528:CDS |
| AAATGTCACATATTATGGTG+TGG | 0.646923 | 2.3:+59417708 | None:intergenic |
| TCAACTTGCTACCCTAAACC+AGG | 0.667040 | 2.3:-59417843 | MS.gene74528:CDS |
| ATAGAAATGTCCCATTACAC+CGG | 0.668859 | 2.3:+59417752 | None:intergenic |
| GGGGTGTGGAAGATAGAATG+GGG | 0.677538 | 2.3:-59418915 | MS.gene74528:CDS |
| AGTGTCCCAATAAAAGCTGG+TGG | 0.684240 | 2.3:-59418435 | MS.gene74528:CDS |
| AACAACAGCATAATGCACAC+CGG | 0.718055 | 2.3:-59417771 | MS.gene74528:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAGTTTTAACTTTTAAAAAT+TGG | + | chr2.3:59419192-59419211 | None:intergenic | 10.0% |
| !!! | ATTTTTAAAAGTTAAAACTT+TGG | - | chr2.3:59419192-59419211 | MS.gene74528:CDS | 10.0% |
| !!! | TTTTTATATATTTTTTACCT+TGG | - | chr2.3:59419105-59419124 | MS.gene74528:CDS | 10.0% |
| !! | TATATGTGAAAAACATTATT+TGG | - | chr2.3:59418577-59418596 | MS.gene74528:intron | 15.0% |
| !!! | GGTTTAATTTTTTAAAACAT+TGG | + | chr2.3:59418958-59418977 | None:intergenic | 15.0% |
| !! | AAAATATCATATAATCCCAA+TGG | - | chr2.3:59418508-59418527 | MS.gene74528:CDS | 20.0% |
| !! | ATTATTATGGTGAGAAATAA+TGG | - | chr2.3:59418055-59418074 | MS.gene74528:intron | 20.0% |
| !! | ATTATTATGGTGAGAAATAA+TGG | + | chr2.3:59418074-59418055 | None:intergenic | 20.0% |
| !! | CATTTATTGTAACGTTATAT+AGG | + | chr2.3:59418291-59418310 | None:intergenic | 20.0% |
| !! | CTCAATTAAATATGCTAATT+TGG | + | chr2.3:59418979-59418998 | None:intergenic | 20.0% |
| !! | TAACCAAACAGATATTATTA+TGG | - | chr2.3:59418042-59418061 | MS.gene74528:intron | 20.0% |
| !! | TAACCAAACAGATATTATTA+TGG | + | chr2.3:59418061-59418042 | None:intergenic | 20.0% |
| !!! | TTATTGTTTGTCACATTTTT+AGG | + | chr2.3:59418025-59418044 | None:intergenic | 20.0% |
| ! | AAAAGTTAAAACTTTGGTTG+TGG | - | chr2.3:59419198-59419217 | MS.gene74528:CDS | 25.0% |
| ! | AACAAATAAGATCAAACCAA+TGG | + | chr2.3:59419017-59419036 | None:intergenic | 25.0% |
| ! | CAAAAACAATGTTAAATCAG+CGG | - | chr2.3:59417811-59417830 | MS.gene74528:CDS | 25.0% |
| ! | GTTACAATAAATGCATTAAG+TGG | - | chr2.3:59418298-59418317 | MS.gene74528:intron | 25.0% |
| ! | TAATTGTGTACTTTAGGTAA+AGG | + | chr2.3:59418420-59418439 | None:intergenic | 25.0% |
| ! | TATGATGTTGAATTTCCAAA+GGG | - | chr2.3:59417890-59417909 | MS.gene74528:CDS | 25.0% |
| ! | TCAAGTAAGTAAATCTTAAC+TGG | + | chr2.3:59418472-59418491 | None:intergenic | 25.0% |
| ! | TCACCATAATAATATCTGTT+TGG | - | chr2.3:59419144-59419163 | MS.gene74528:CDS | 25.0% |
| ! | TCACCATAATAATATCTGTT+TGG | + | chr2.3:59419163-59419144 | None:intergenic | 25.0% |
| ! | TTATGATGTTGAATTTCCAA+AGG | - | chr2.3:59417889-59417908 | MS.gene74528:CDS | 25.0% |
| !! | AATTTGTTTGAAATTGATCC+TGG | + | chr2.3:59417866-59417885 | None:intergenic | 25.0% |
| !!! | ATTGTTTTTGGTATTTCTGT+TGG | + | chr2.3:59417801-59417820 | None:intergenic | 25.0% |
| AAGAAACTTATCTTCACCAT+TGG | - | chr2.3:59417978-59417997 | MS.gene74528:intron | 30.0% | |
| AATCCTTCACAAATTCCTAA+AGG | - | chr2.3:59418178-59418197 | MS.gene74528:intron | 30.0% | |
| AATCTACATTGACCATTATC+AGG | + | chr2.3:59418367-59418386 | None:intergenic | 30.0% | |
| AATGGTGAAGATAAGTTTCT+TGG | + | chr2.3:59417979-59417998 | None:intergenic | 30.0% | |
| ACCTAAAGTACACAATTATG+TGG | - | chr2.3:59418422-59418441 | MS.gene74528:CDS | 30.0% | |
| ACTCATTGTGCTTGATATAT+AGG | - | chr2.3:59418631-59418650 | MS.gene74528:CDS | 30.0% | |
| ATAATGGTCAATGTAGATTG+AGG | - | chr2.3:59418368-59418387 | MS.gene74528:intron | 30.0% | |
| ATCCTTCACAAATTCCTAAA+GGG | - | chr2.3:59418179-59418198 | MS.gene74528:intron | 30.0% | |
| ATTGTCCAAGAATATCATCT+TGG | + | chr2.3:59418087-59418106 | None:intergenic | 30.0% | |
| CCTAAAGTACACAATTATGT+GGG | - | chr2.3:59418423-59418442 | MS.gene74528:CDS | 30.0% | |
| CCTTTAAGTCCAAATTACAA+AGG | - | chr2.3:59418325-59418344 | MS.gene74528:intron | 30.0% | |
| CCTTTGTAATTTGGACTTAA+AGG | + | chr2.3:59418328-59418347 | None:intergenic | 30.0% | |
| CTGAACTAGTAGATGAATAT+GGG | - | chr2.3:59417939-59417958 | MS.gene74528:intron | 30.0% | |
| GATATTCTTGGACAATACTA+TGG | - | chr2.3:59418091-59418110 | MS.gene74528:intron | 30.0% | |
| GGTTCTATCAAGATATTTGA+TGG | - | chr2.3:59419338-59419357 | MS.gene74528:CDS | 30.0% | |
| TACCAATTTCTACTCCATAA+GGG | + | chr2.3:59418159-59418178 | None:intergenic | 30.0% | |
| TCAAATATCTTGATAGAACC+TGG | + | chr2.3:59419338-59419357 | None:intergenic | 30.0% | |
| TTAAGTCCAAATTACAAAGG+AGG | - | chr2.3:59418328-59418347 | MS.gene74528:intron | 30.0% | |
| TTACCAATTTCTACTCCATA+AGG | + | chr2.3:59418160-59418179 | None:intergenic | 30.0% | |
| TTATGCCAAGATGATATTCT+TGG | - | chr2.3:59418079-59418098 | MS.gene74528:intron | 30.0% | |
| ! | AATGGGACATTTCTATTTCT+TGG | - | chr2.3:59419415-59419434 | MS.gene74528:CDS | 30.0% |
| ! | ATATAACCACCAGCTTTTAT+TGG | + | chr2.3:59418734-59418753 | None:intergenic | 30.0% |
| ! | CATTTTTCATCATACCCTTT+AGG | + | chr2.3:59418196-59418215 | None:intergenic | 30.0% |
| ! | CTAAAGGGTATGATGAAAAA+TGG | - | chr2.3:59418194-59418213 | MS.gene74528:intron | 30.0% |
| ! | TATAACCACCAGCTTTTATT+GGG | + | chr2.3:59418733-59418752 | None:intergenic | 30.0% |
| ! | TGAGGTTTTTATCTCAAGAT+TGG | - | chr2.3:59417714-59417733 | MS.gene74528:CDS | 30.0% |
| !! | AGAAATAATGGATTATGCCA+AGG | + | chr2.3:59418086-59418067 | None:intergenic | 30.0% |
| !!! | CGCTGATTTAACATTGTTTT+TGG | + | chr2.3:59417813-59417832 | None:intergenic | 30.0% |
| !!! | GGTATTTTAGAACAATCCAA+TGG | + | chr2.3:59417997-59418016 | None:intergenic | 30.0% |
| !!! | TTGTCACATTTTTAGGTTGT+TGG | + | chr2.3:59418018-59418037 | None:intergenic | 30.0% |
| ACATATATTCCTGACCCTTA+TGG | - | chr2.3:59418142-59418161 | MS.gene74528:intron | 35.0% | |
| ATAGAAATGTCCCATTACAC+CGG | + | chr2.3:59419411-59419430 | None:intergenic | 35.0% | |
| ATCTTGATAGAACCTGGTTT+AGG | + | chr2.3:59419332-59419351 | None:intergenic | 35.0% | |
| ATGACATACCTGTCCATATA+GGG | + | chr2.3:59418801-59418820 | None:intergenic | 35.0% | |
| ATGTCCATGCAATTGATACA+AGG | - | chr2.3:59418224-59418243 | MS.gene74528:intron | 35.0% | |
| ATGTTTGATGCTCATTCCAT+TGG | + | chr2.3:59418527-59418546 | None:intergenic | 35.0% | |
| CCAAATTACAAAGGAGGTTT+AGG | - | chr2.3:59418334-59418353 | MS.gene74528:intron | 35.0% | |
| CCCACATAATTGTGTACTTT+AGG | + | chr2.3:59418426-59418445 | None:intergenic | 35.0% | |
| CCTAAACCTCCTTTGTAATT+TGG | + | chr2.3:59418337-59418356 | None:intergenic | 35.0% | |
| CCTAAGATTGAATTAAGTCC+AGG | - | chr2.3:59417845-59417864 | MS.gene74528:CDS | 35.0% | |
| CCTGGACTTAATTCAATCTT+AGG | + | chr2.3:59417848-59417867 | None:intergenic | 35.0% | |
| CTAGTTGAACCAAATTCAAC+CGG | - | chr2.3:59419044-59419063 | MS.gene74528:CDS | 35.0% | |
| GAGCATCAAACATAATTGCA+AGG | - | chr2.3:59418534-59418553 | MS.gene74528:intron | 35.0% | |
| GCTGAACTAGTAGATGAATA+TGG | - | chr2.3:59417938-59417957 | MS.gene74528:intron | 35.0% | |
| GGTTATATAATCTACAGTGC+TGG | - | chr2.3:59418746-59418765 | MS.gene74528:CDS | 35.0% | |
| TCAAGATTGGATGCTTTCAT+GGG | - | chr2.3:59417727-59417746 | MS.gene74528:CDS | 35.0% | |
| TCAATCCCAAAATATGGAAC+TGG | - | chr2.3:59419254-59419273 | MS.gene74528:CDS | 35.0% | |
| TCTTGATAGAACCTGGTTTA+GGG | + | chr2.3:59419331-59419350 | None:intergenic | 35.0% | |
| TGAAGATAAGTTTCTTGGAG+AGG | + | chr2.3:59417974-59417993 | None:intergenic | 35.0% | |
| TGCAACTCAATCCCAAAATA+TGG | - | chr2.3:59419248-59419267 | MS.gene74528:CDS | 35.0% | |
| TGTCCATGCAATTGATACAA+GGG | - | chr2.3:59418225-59418244 | MS.gene74528:intron | 35.0% | |
| TGTGGCATTAATGTTAGGAT+GGG | - | chr2.3:59419216-59419235 | MS.gene74528:CDS | 35.0% | |
| TGTTTGATGCTCATTCCATT+GGG | + | chr2.3:59418526-59418545 | None:intergenic | 35.0% | |
| TTAGGATGTTGTCCTGATAA+TGG | - | chr2.3:59418352-59418371 | MS.gene74528:intron | 35.0% | |
| TTGGTTGTGGCATTAATGTT+AGG | - | chr2.3:59419211-59419230 | MS.gene74528:CDS | 35.0% | |
| TTGTGGCATTAATGTTAGGA+TGG | - | chr2.3:59419215-59419234 | MS.gene74528:CDS | 35.0% | |
| ! | AGATTGAGGAAAGGCTTTTT+GGG | - | chr2.3:59418382-59418401 | MS.gene74528:CDS | 35.0% |
| ! | CCATTCCAGTTCCATATTTT+GGG | + | chr2.3:59419262-59419281 | None:intergenic | 35.0% |
| ! | TACCCTTTAGGAATTTGTGA+AGG | + | chr2.3:59418184-59418203 | None:intergenic | 35.0% |
| ! | TAGATTGAGGAAAGGCTTTT+TGG | - | chr2.3:59418381-59418400 | MS.gene74528:CDS | 35.0% |
| ! | TCCATTCCAGTTCCATATTT+TGG | + | chr2.3:59419263-59419282 | None:intergenic | 35.0% |
| !! | AATGAGAAAGGGTATCTTGT+AGG | - | chr2.3:59419290-59419309 | MS.gene74528:CDS | 35.0% |
| !! | ACACAATTATGTGGGTTGAT+TGG | - | chr2.3:59418431-59418450 | MS.gene74528:CDS | 35.0% |
| !! | CACAATTATGTGGGTTGATT+GGG | - | chr2.3:59418432-59418451 | MS.gene74528:CDS | 35.0% |
| AAACCAATGGACGAATTGGT+CGG | + | chr2.3:59419004-59419023 | None:intergenic | 40.0% | |
| AACAACAGCATAATGCACAC+CGG | - | chr2.3:59419389-59419408 | MS.gene74528:CDS | 40.0% | |
| ACAAGTGTCCCAATAAAAGC+TGG | - | chr2.3:59418722-59418741 | MS.gene74528:CDS | 40.0% | |
| ATAATGCACACCGGTGTAAT+GGG | - | chr2.3:59419398-59419417 | MS.gene74528:CDS | 40.0% | |
| ATGGAAGCAGGAAATGAGAA+AGG | - | chr2.3:59419278-59419297 | MS.gene74528:CDS | 40.0% | |
| ATTTCTACTCCATAAGGGTC+AGG | + | chr2.3:59418154-59418173 | None:intergenic | 40.0% | |
| CATGACATACCTGTCCATAT+AGG | + | chr2.3:59418802-59418821 | None:intergenic | 40.0% | |
| CCCAAAATATGGAACTGGAA+TGG | - | chr2.3:59419259-59419278 | MS.gene74528:CDS | 40.0% | |
| CTCAAGATTGGATGCTTTCA+TGG | - | chr2.3:59417726-59417745 | MS.gene74528:CDS | 40.0% | |
| GACCCTTATGGAGTAGAAAT+TGG | - | chr2.3:59418154-59418173 | MS.gene74528:intron | 40.0% | |
| GATCAAACCAATGGACGAAT+TGG | + | chr2.3:59419008-59419027 | None:intergenic | 40.0% | |
| GCATTAATGTTAGGATGGGA+GGG | - | chr2.3:59419220-59419239 | MS.gene74528:CDS | 40.0% | |
| GCGATTAGATCAACCCTATA+TGG | - | chr2.3:59418785-59418804 | MS.gene74528:CDS | 40.0% | |
| GGTCAATGTAGATTGAGGAA+AGG | - | chr2.3:59418373-59418392 | MS.gene74528:CDS | 40.0% | |
| GTCCATGCAATTGATACAAG+GGG | - | chr2.3:59418226-59418245 | MS.gene74528:intron | 40.0% | |
| TAGATCAACCCTATATGGAC+AGG | - | chr2.3:59418790-59418809 | MS.gene74528:CDS | 40.0% | |
| TGGAAGCAGGAAATGAGAAA+GGG | - | chr2.3:59419279-59419298 | MS.gene74528:CDS | 40.0% | |
| TTATGTGTGATTCATGCGAC+TGG | + | chr2.3:59418865-59418884 | None:intergenic | 40.0% | |
| TTGAGTGCAATATGACCCTT+TGG | + | chr2.3:59417908-59417927 | None:intergenic | 40.0% | |
| ! | GGGACATTTCTATTTCTTGG+TGG | - | chr2.3:59419418-59419437 | MS.gene74528:CDS | 40.0% |
| ! | GGTTGATTGGGATGATTTTG+TGG | - | chr2.3:59418444-59418463 | MS.gene74528:CDS | 40.0% |
| !! | CTGTTGGTAGCTAATAAGCA+TGG | + | chr2.3:59417785-59417804 | None:intergenic | 40.0% |
| AAAAGCCATGGGAATGGTAG+TGG | - | chr2.3:59418680-59418699 | MS.gene74528:CDS | 45.0% | |
| AAACGTTGCACCAAAAGCCA+TGG | - | chr2.3:59418668-59418687 | MS.gene74528:CDS | 45.0% | |
| AACGTTGCACCAAAAGCCAT+GGG | - | chr2.3:59418669-59418688 | MS.gene74528:CDS | 45.0% | |
| AGTGTCCCAATAAAAGCTGG+TGG | - | chr2.3:59418725-59418744 | MS.gene74528:CDS | 45.0% | |
| ATCGAACCAAGTACCAACCA+CGG | + | chr2.3:59419074-59419093 | None:intergenic | 45.0% | |
| CACCCCTTGTATCAATTGCA+TGG | + | chr2.3:59418231-59418250 | None:intergenic | 45.0% | |
| CATAATGCACACCGGTGTAA+TGG | - | chr2.3:59419397-59419416 | MS.gene74528:CDS | 45.0% | |
| CTTGGACAATACTATGGCCT+TGG | - | chr2.3:59418097-59418116 | MS.gene74528:intron | 45.0% | |
| GGCAATCTTAGTGCTAGTGT+TGG | - | chr2.3:59417748-59417767 | MS.gene74528:CDS | 45.0% | |
| GGCATTAATGTTAGGATGGG+AGG | - | chr2.3:59419219-59419238 | MS.gene74528:CDS | 45.0% | |
| TATGGAACTGGAATGGAAGC+AGG | - | chr2.3:59419266-59419285 | MS.gene74528:CDS | 45.0% | |
| TGCAATTGATACAAGGGGTG+TGG | - | chr2.3:59418231-59418250 | MS.gene74528:intron | 45.0% | |
| ! | AAGGGGTGTGGAAGATAGAA+TGG | - | chr2.3:59418243-59418262 | MS.gene74528:intron | 45.0% |
| ! | ACTACCATTCCCATGGCTTT+TGG | + | chr2.3:59418681-59418700 | None:intergenic | 45.0% |
| ! | AGGGGTGTGGAAGATAGAAT+GGG | - | chr2.3:59418244-59418263 | MS.gene74528:intron | 45.0% |
| !! | AGTGCTGGTCATCAACATGT+AGG | - | chr2.3:59418761-59418780 | MS.gene74528:CDS | 45.0% |
| !! | TCAACTTGCTACCCTAAACC+AGG | - | chr2.3:59419317-59419336 | MS.gene74528:CDS | 45.0% |
| AAGTACCAACCACGGAACAC+CGG | + | chr2.3:59419066-59419085 | None:intergenic | 50.0% | |
| CAAATTCAACCGGTGTTCCG+TGG | - | chr2.3:59419054-59419073 | MS.gene74528:CDS | 50.0% | |
| CACAACCACTACCATTCCCA+TGG | + | chr2.3:59418688-59418707 | None:intergenic | 50.0% | |
| GGGGTGTGGAAGATAGAATG+GGG | - | chr2.3:59418245-59418264 | MS.gene74528:intron | 50.0% | |
| TGCACCAAAAGCCATGGGAA+TGG | - | chr2.3:59418674-59418693 | MS.gene74528:CDS | 50.0% | |
| ! | CACGGAACACCGGTTGAATT+TGG | + | chr2.3:59419056-59419075 | None:intergenic | 50.0% |
| ! | TGCCTCTAGTTTCAGCTCCA+AGG | + | chr2.3:59418117-59418136 | None:intergenic | 50.0% |
| GAGCCGACCAATTCGTCCAT+TGG | - | chr2.3:59418998-59419017 | MS.gene74528:CDS | 55.0% | |
| GGCCTTGGAGCTGAAACTAG+AGG | - | chr2.3:59418112-59418131 | MS.gene74528:intron | 55.0% | |
| TTCAACCGGTGTTCCGTGGT+TGG | - | chr2.3:59419058-59419077 | MS.gene74528:CDS | 55.0% | |
| ! | GGTGTTCCGTGGTTGGTACT+TGG | - | chr2.3:59419065-59419084 | MS.gene74528:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.3 | gene | 59417713 | 59419469 | 59417713 | ID=MS.gene74528 |
| chr2.3 | mRNA | 59417713 | 59419469 | 59417713 | ID=MS.gene74528.t1;Parent=MS.gene74528 |
| chr2.3 | exon | 59418627 | 59419469 | 59418627 | ID=MS.gene74528.t1.exon1;Parent=MS.gene74528.t1 |
| chr2.3 | CDS | 59418627 | 59419469 | 59418627 | ID=cds.MS.gene74528.t1;Parent=MS.gene74528.t1 |
| chr2.3 | exon | 59418371 | 59418529 | 59418371 | ID=MS.gene74528.t1.exon2;Parent=MS.gene74528.t1 |
| chr2.3 | CDS | 59418371 | 59418529 | 59418371 | ID=cds.MS.gene74528.t1;Parent=MS.gene74528.t1 |
| chr2.3 | exon | 59417713 | 59417949 | 59417713 | ID=MS.gene74528.t1.exon3;Parent=MS.gene74528.t1 |
| chr2.3 | CDS | 59417713 | 59417949 | 59417713 | ID=cds.MS.gene74528.t1;Parent=MS.gene74528.t1 |
| Gene Sequence |
| Protein sequence |
