Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene74622.t1 | XP_013443133.1 | 64.8 | 290 | 45 | 7 | 1 | 280 | 1 | 243 | 6.40E-84 | 321.6 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene74622.t1 | Q0IGK1 | 48.6 | 142 | 68 | 1 | 139 | 280 | 271 | 407 | 1.2e-30 | 136.0 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene74622.t1 | A0A072TJT5 | 64.8 | 290 | 45 | 7 | 1 | 280 | 1 | 243 | 4.6e-84 | 321.6 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene057260 | MS.gene74622 | 0.802826 | 4.67E-49 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene74622.t1 | MTR_0037s0060 | 69.435 | 301 | 35 | 7 | 1 | 291 | 1 | 254 | 6.73e-126 | 369 |
MS.gene74622.t1 | MTR_0037s0250 | 64.236 | 288 | 50 | 6 | 1 | 280 | 4 | 246 | 8.06e-110 | 327 |
MS.gene74622.t1 | MTR_0037s0250 | 62.333 | 300 | 60 | 6 | 1 | 292 | 1 | 255 | 2.79e-109 | 326 |
MS.gene74622.t1 | MTR_6g033105 | 59.389 | 229 | 28 | 7 | 1 | 216 | 1 | 177 | 1.03e-68 | 219 |
MS.gene74622.t1 | MTR_6g034730 | 76.471 | 68 | 16 | 0 | 217 | 284 | 4 | 71 | 3.94e-29 | 110 |
MS.gene74622.t1 | MTR_1g034250 | 51.111 | 90 | 41 | 2 | 309 | 395 | 1 | 90 | 9.23e-21 | 92.4 |
MS.gene74622.t1 | MTR_0566s0020 | 45.556 | 90 | 44 | 3 | 309 | 395 | 1 | 88 | 2.51e-14 | 72.8 |
MS.gene74622.t1 | MTR_0195s0010 | 44.565 | 92 | 41 | 4 | 309 | 395 | 1 | 87 | 1.47e-13 | 70.9 |
MS.gene74622.t1 | MTR_0195s0020 | 44.565 | 92 | 41 | 4 | 309 | 395 | 1 | 87 | 3.30e-13 | 72.4 |
MS.gene74622.t1 | MTR_1g063810 | 62.500 | 48 | 18 | 0 | 342 | 389 | 37 | 84 | 1.10e-11 | 63.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene74622.t1 | AT3G07930 | 53.906 | 128 | 54 | 2 | 164 | 291 | 180 | 302 | 1.40e-38 | 144 |
MS.gene74622.t1 | AT3G07930 | 57.265 | 117 | 45 | 2 | 164 | 280 | 296 | 407 | 9.09e-38 | 144 |
MS.gene74622.t1 | AT3G07930 | 64.151 | 53 | 14 | 2 | 164 | 216 | 296 | 343 | 3.34e-14 | 74.3 |
MS.gene74622.t1 | AT3G07930 | 66.667 | 48 | 11 | 2 | 164 | 211 | 296 | 338 | 7.39e-13 | 70.5 |
Find 116 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GGAAAACACCGGATAATAAT+TGG | 0.173506 | 6.3:+22291898 | MS.gene74622:CDS |
ACCTCTTGTATTTCCTCTTT+TGG | 0.193190 | 6.3:-22293833 | None:intergenic |
TCTTCCAGCATCTATCTTTC+GGG | 0.215889 | 6.3:+22297114 | MS.gene74622:CDS |
CTCTTCCAGCATCTATCTTT+CGG | 0.237703 | 6.3:+22297113 | MS.gene74622:CDS |
TCTTCAACTTTCTGAAAATA+AGG | 0.272553 | 6.3:-22291582 | None:intergenic |
CGAGAGCCATTGAAAATCTT+AGG | 0.283054 | 6.3:-22291786 | None:intergenic |
TTGAAGATTTAGAACAGTTT+AGG | 0.299387 | 6.3:+22291712 | MS.gene74622:CDS |
TCTTCAACTTCCTGAAAATA+AGG | 0.315866 | 6.3:-22291639 | None:intergenic |
CCCAACTTCTGCTCATTCTA+AGG | 0.320731 | 6.3:+22298138 | MS.gene74622:CDS |
TGGCCCTACTGTCACTTATT+CGG | 0.324877 | 6.3:+22297087 | MS.gene74622:CDS |
CTGCCTTCGCCATGTTTGAT+TGG | 0.345401 | 6.3:+22296933 | MS.gene74622:CDS |
TGCATGCAAGTTTCTGCGTT+TGG | 0.349543 | 6.3:-22293806 | None:intergenic |
GCCTGAGCAAATGATGGTTT+TGG | 0.353973 | 6.3:-22297058 | None:intergenic |
GGTTCTGCTGATACTGAAAC+TGG | 0.358460 | 6.3:-22296986 | None:intergenic |
ACAGAATGTCACGACTGATA+TGG | 0.370581 | 6.3:+22298180 | MS.gene74622:CDS |
TTTGATTGGCAAGCAGAGTT+GGG | 0.382470 | 6.3:+22296947 | MS.gene74622:CDS |
GGGACTGATCGTTGTTCATT+CGG | 0.398713 | 6.3:-22298118 | None:intergenic |
TAAGGAGACACGACCCTCTC+TGG | 0.408073 | 6.3:-22291564 | None:intergenic |
CTGCCTGTGTTTCGATGGAT+TGG | 0.424955 | 6.3:-22298042 | None:intergenic |
TCCTTAGAATGAGCAGAAGT+TGG | 0.426998 | 6.3:-22298139 | None:intergenic |
CAAGAGGTAATTAAGACATT+AGG | 0.427686 | 6.3:+22293848 | MS.gene74622:CDS |
TGTGGCCCGGCCTGACGATC+CGG | 0.433151 | 6.3:+22298279 | MS.gene74622:CDS |
ATCGGATCCACCGGATCGTC+AGG | 0.441961 | 6.3:-22298289 | None:intergenic |
CATCTATCAGCCTTAAGAAA+AGG | 0.442836 | 6.3:-22291858 | None:intergenic |
TAAGGAGACACGACCCTTTG+TGG | 0.442932 | 6.3:-22291621 | None:intergenic |
TTCTTAAGGCTGATAGATGT+AGG | 0.446534 | 6.3:+22291862 | MS.gene74622:CDS |
GTTTGATTGGCAAGCAGAGT+TGG | 0.449306 | 6.3:+22296946 | MS.gene74622:CDS |
TCAGAAGCTAAAGTAAGAAA+TGG | 0.449942 | 6.3:-22298235 | None:intergenic |
CACGACTGATATGGCCCGTC+AGG | 0.457098 | 6.3:+22298189 | MS.gene74622:CDS |
AGCTTCCAACCCTCGAAGAT+AGG | 0.466209 | 6.3:-22297170 | None:intergenic |
GAAAACACCGGATAATAATT+GGG | 0.469834 | 6.3:+22291899 | MS.gene74622:CDS |
ATCAGCAGAACCTGTCCCTC+TGG | 0.471458 | 6.3:+22296997 | MS.gene74622:CDS |
TTTCAGTAAGTATGCGTACA+AGG | 0.478351 | 6.3:+22291440 | MS.gene74622:CDS |
GAACCGCACTAAAGGTGAAC+AGG | 0.481639 | 6.3:+22292019 | MS.gene74622:CDS |
CCTTAGAATGAGCAGAAGTT+GGG | 0.482174 | 6.3:-22298138 | None:intergenic |
CATTAGGTCTTCAAGTGAAA+AGG | 0.482808 | 6.3:+22293864 | MS.gene74622:CDS |
GAAAGTTGAAGAGTGTAAAG+TGG | 0.483269 | 6.3:+22291593 | MS.gene74622:CDS |
AGGTGGATTCTTGTCGTGCT+AGG | 0.485309 | 6.3:+22291490 | MS.gene74622:CDS |
TACAAAGAGTGTTGTTGAGG+TGG | 0.494694 | 6.3:+22291473 | MS.gene74622:CDS |
TCATTTGCTCAGGCACTTCG+TGG | 0.498500 | 6.3:+22297067 | MS.gene74622:CDS |
CACGGAAATGATACTCTTGA+AGG | 0.503438 | 6.3:-22291962 | None:intergenic |
CGAAAGATAGATGCTGGAAG+AGG | 0.503533 | 6.3:-22297112 | None:intergenic |
GTGAATACTTAGCCGGGACT+TGG | 0.505430 | 6.3:+22293912 | MS.gene74622:CDS |
GATCCACCGGATCGTCAGGC+CGG | 0.505559 | 6.3:-22298285 | None:intergenic |
CTTTCTCGTGAATACTTAGC+CGG | 0.505784 | 6.3:+22293905 | MS.gene74622:CDS |
TTCACAAACTCATGAGATCC+AGG | 0.509661 | 6.3:+22298018 | MS.gene74622:CDS |
CTTCCAGCATCTATCTTTCG+GGG | 0.512133 | 6.3:+22297115 | MS.gene74622:CDS |
ATCCACCGGATCGTCAGGCC+GGG | 0.512756 | 6.3:-22298284 | None:intergenic |
ACTAAGGATGCCTATCTTCG+AGG | 0.512906 | 6.3:+22297160 | MS.gene74622:CDS |
AGTGGCTGCCTGTGTTTCGA+TGG | 0.514878 | 6.3:-22298047 | None:intergenic |
ACTCTGAAGATGACGAGACT+AGG | 0.521203 | 6.3:+22298083 | MS.gene74622:CDS |
CCCAAAACCATCATTTGCTC+AGG | 0.521395 | 6.3:+22297057 | MS.gene74622:CDS |
GGCATCAAATGTGTGAGAAC+TGG | 0.522564 | 6.3:+22295706 | MS.gene74622:CDS |
TTGCATGCAAGTACCAAAAG+AGG | 0.526068 | 6.3:+22293820 | MS.gene74622:CDS |
GGATTCTTGTCGTGCTAGGA+AGG | 0.526763 | 6.3:+22291494 | MS.gene74622:CDS |
AATGCAATAGCCAGAGGGAC+AGG | 0.526780 | 6.3:-22297007 | None:intergenic |
GATGTAGGGAAGCTTACATA+AGG | 0.526950 | 6.3:+22291877 | MS.gene74622:CDS |
CTCTGCTTGCCAATCAAACA+TGG | 0.527634 | 6.3:-22296942 | None:intergenic |
GTGTTTCGATGGATTGGACC+TGG | 0.527689 | 6.3:-22298036 | None:intergenic |
TCTTAAGGCTGATAGATGTA+GGG | 0.528906 | 6.3:+22291863 | MS.gene74622:CDS |
GAAAATCGAAGAGTGTAAAG+TGG | 0.533714 | 6.3:+22291536 | MS.gene74622:CDS |
CGAAGTGCCTGAGCAAATGA+TGG | 0.535765 | 6.3:-22297064 | None:intergenic |
ATGCTACTGAACCGCACTAA+AGG | 0.536386 | 6.3:+22292011 | MS.gene74622:CDS |
GGAACTCTGCTTATTTCCAT+CGG | 0.544100 | 6.3:+22299540 | MS.gene74622:intron |
GGTGGATCCGATGCTACAAA+AGG | 0.545093 | 6.3:+22298300 | MS.gene74622:CDS |
GGAGGCACCCAATTATTATC+CGG | 0.546937 | 6.3:-22291906 | None:intergenic |
CTCTGAAGATGACGAGACTA+GGG | 0.546969 | 6.3:+22298084 | MS.gene74622:CDS |
CATATAACAATCACCCTCCA+TGG | 0.550910 | 6.3:-22291987 | None:intergenic |
AGTATCATTTCCGTGATCCA+TGG | 0.552016 | 6.3:+22291970 | MS.gene74622:CDS |
TTCCAGCATCTATCTTTCGG+GGG | 0.553167 | 6.3:+22297116 | MS.gene74622:CDS |
TTGATTGGCAAGCAGAGTTG+GGG | 0.558424 | 6.3:+22296948 | MS.gene74622:CDS |
CGGCTAAGTATTCACGAGAA+AGG | 0.563641 | 6.3:-22293904 | None:intergenic |
ATTCTTAACAACCTCCTGAC+GGG | 0.563864 | 6.3:-22298203 | None:intergenic |
CTAAGGATGCCTATCTTCGA+GGG | 0.567804 | 6.3:+22297161 | MS.gene74622:CDS |
TTTCTCGTGAATACTTAGCC+GGG | 0.570744 | 6.3:+22293906 | MS.gene74622:CDS |
TAAAGTGGAGCATCCACAAA+GGG | 0.571179 | 6.3:+22291608 | MS.gene74622:CDS |
TCACACATTTGATGCCATTG+TGG | 0.575385 | 6.3:-22295699 | None:intergenic |
GCTGATACTGAAACTGGGAC+CGG | 0.579576 | 6.3:-22296980 | None:intergenic |
GATCCGAATAAGTGACAGTA+GGG | 0.581296 | 6.3:-22297090 | None:intergenic |
GTTGTCAATTCACATCACTA+AGG | 0.582499 | 6.3:+22297144 | MS.gene74622:CDS |
TCTTACAAAGAGTGTTGTTG+AGG | 0.587653 | 6.3:+22291470 | MS.gene74622:CDS |
GAACGAGACACGACCCTCTG+TGG | 0.587983 | 6.3:-22291678 | None:intergenic |
AATTCTTAACAACCTCCTGA+CGG | 0.591071 | 6.3:-22298204 | None:intergenic |
GGCCCGGCCTGACGATCCGG+TGG | 0.591867 | 6.3:+22298282 | MS.gene74622:CDS |
GGATCCGAATAAGTGACAGT+AGG | 0.592642 | 6.3:-22297091 | None:intergenic |
GACTGATATGGCCCGTCAGG+AGG | 0.593282 | 6.3:+22298192 | MS.gene74622:CDS |
CAATCACCCTCCATGGATCA+CGG | 0.603020 | 6.3:-22291980 | None:intergenic |
GGTCCAATCCATCGAAACAC+AGG | 0.610215 | 6.3:+22298039 | MS.gene74622:CDS |
TCCAGCATCTATCTTTCGGG+GGG | 0.611424 | 6.3:+22297117 | MS.gene74622:CDS |
GACCGAAAGTTGAAAAGCCT+AGG | 0.611563 | 6.3:+22291814 | MS.gene74622:CDS |
TAAAGTGGAGCATCCAGAGA+GGG | 0.619283 | 6.3:+22291551 | MS.gene74622:CDS |
TTCAGTAAGTATGCGTACAA+GGG | 0.620982 | 6.3:+22291441 | MS.gene74622:CDS |
TTGTACGCATACTTACTGAA+AGG | 0.621933 | 6.3:-22291438 | None:intergenic |
AGTCACATAAGTCCAAGTCC+CGG | 0.623457 | 6.3:-22293924 | None:intergenic |
GAGCCATTGAAAATCTTAGG+AGG | 0.626770 | 6.3:-22291783 | None:intergenic |
TTGCCAATCAAACATGGCGA+AGG | 0.631254 | 6.3:-22296936 | None:intergenic |
TGATTGGCAAGCAGAGTTGG+GGG | 0.632724 | 6.3:+22296949 | MS.gene74622:CDS |
GGAAGTTGAAGAGTGTAATG+TGG | 0.635335 | 6.3:+22291650 | MS.gene74622:CDS |
ACCAAAAGAGGAAATACAAG+AGG | 0.636548 | 6.3:+22293832 | MS.gene74622:CDS |
GTAAAGTGGAGCATCCAGAG+AGG | 0.637261 | 6.3:+22291550 | MS.gene74622:CDS |
GCTACAAAAGGAGATTGAGA+TGG | 0.639934 | 6.3:+22298312 | MS.gene74622:CDS |
GTACCTGTTCACCTTTAGTG+CGG | 0.640154 | 6.3:-22292022 | None:intergenic |
TAATGTGGAGCATCCACAGA+GGG | 0.640527 | 6.3:+22291665 | MS.gene74622:CDS |
ATCATTTCCGTGATCCATGG+AGG | 0.642513 | 6.3:+22291973 | MS.gene74622:CDS |
TTGACTAATGCAATAGCCAG+AGG | 0.644626 | 6.3:-22297013 | None:intergenic |
AGCACTCGTTTGCGCCACAA+TGG | 0.654900 | 6.3:+22295685 | MS.gene74622:intron |
TCATTTCCGTGATCCATGGA+GGG | 0.656462 | 6.3:+22291974 | MS.gene74622:CDS |
TGACTAATGCAATAGCCAGA+GGG | 0.658824 | 6.3:-22297012 | None:intergenic |
AGCTTACATAAGGAAAACAC+CGG | 0.664968 | 6.3:+22291887 | MS.gene74622:CDS |
TCAGTCGTGACATTCTGTAG+AGG | 0.666764 | 6.3:-22298175 | None:intergenic |
GTGACTGAACTGCACAGTGT+TGG | 0.673794 | 6.3:+22293941 | MS.gene74622:CDS |
GTTCTGCTGATACTGAAACT+GGG | 0.673857 | 6.3:-22296985 | None:intergenic |
ACGAGAGGAGGTGTAGAACG+TGG | 0.676331 | 6.3:-22291927 | None:intergenic |
GTAAAGTGGAGCATCCACAA+AGG | 0.695425 | 6.3:+22291607 | MS.gene74622:CDS |
AGAGGAGGTGTAGAACGTGG+AGG | 0.751771 | 6.3:-22291924 | None:intergenic |
GTAATGTGGAGCATCCACAG+AGG | 0.810807 | 6.3:+22291664 | MS.gene74622:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr6.3 | gene | 22291396 | 22299576 | 22291396 | ID=MS.gene74622 |
chr6.3 | mRNA | 22291396 | 22299576 | 22291396 | ID=MS.gene74622.t1;Parent=MS.gene74622 |
chr6.3 | exon | 22291396 | 22292040 | 22291396 | ID=MS.gene74622.t1.exon1;Parent=MS.gene74622.t1 |
chr6.3 | CDS | 22291396 | 22292040 | 22291396 | ID=cds.MS.gene74622.t1;Parent=MS.gene74622.t1 |
chr6.3 | exon | 22293770 | 22293966 | 22293770 | ID=MS.gene74622.t1.exon2;Parent=MS.gene74622.t1 |
chr6.3 | CDS | 22293770 | 22293966 | 22293770 | ID=cds.MS.gene74622.t1;Parent=MS.gene74622.t1 |
chr6.3 | exon | 22295687 | 22295727 | 22295687 | ID=MS.gene74622.t1.exon3;Parent=MS.gene74622.t1 |
chr6.3 | CDS | 22295687 | 22295727 | 22295687 | ID=cds.MS.gene74622.t1;Parent=MS.gene74622.t1 |
chr6.3 | exon | 22296903 | 22297182 | 22296903 | ID=MS.gene74622.t1.exon4;Parent=MS.gene74622.t1 |
chr6.3 | CDS | 22296903 | 22297182 | 22296903 | ID=cds.MS.gene74622.t1;Parent=MS.gene74622.t1 |
chr6.3 | exon | 22298009 | 22298333 | 22298009 | ID=MS.gene74622.t1.exon5;Parent=MS.gene74622.t1 |
chr6.3 | CDS | 22298009 | 22298333 | 22298009 | ID=cds.MS.gene74622.t1;Parent=MS.gene74622.t1 |
chr6.3 | exon | 22299541 | 22299576 | 22299541 | ID=MS.gene74622.t1.exon6;Parent=MS.gene74622.t1 |
chr6.3 | CDS | 22299541 | 22299576 | 22299541 | ID=cds.MS.gene74622.t1;Parent=MS.gene74622.t1 |
Gene Sequence |
Protein sequence |