Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene74622.t1 | XP_013443133.1 | 64.8 | 290 | 45 | 7 | 1 | 280 | 1 | 243 | 6.40E-84 | 321.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene74622.t1 | Q0IGK1 | 48.6 | 142 | 68 | 1 | 139 | 280 | 271 | 407 | 1.2e-30 | 136.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene74622.t1 | A0A072TJT5 | 64.8 | 290 | 45 | 7 | 1 | 280 | 1 | 243 | 4.6e-84 | 321.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene057260 | MS.gene74622 | 0.802826 | 4.67E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene74622.t1 | MTR_0037s0060 | 69.435 | 301 | 35 | 7 | 1 | 291 | 1 | 254 | 6.73e-126 | 369 |
| MS.gene74622.t1 | MTR_0037s0250 | 64.236 | 288 | 50 | 6 | 1 | 280 | 4 | 246 | 8.06e-110 | 327 |
| MS.gene74622.t1 | MTR_0037s0250 | 62.333 | 300 | 60 | 6 | 1 | 292 | 1 | 255 | 2.79e-109 | 326 |
| MS.gene74622.t1 | MTR_6g033105 | 59.389 | 229 | 28 | 7 | 1 | 216 | 1 | 177 | 1.03e-68 | 219 |
| MS.gene74622.t1 | MTR_6g034730 | 76.471 | 68 | 16 | 0 | 217 | 284 | 4 | 71 | 3.94e-29 | 110 |
| MS.gene74622.t1 | MTR_1g034250 | 51.111 | 90 | 41 | 2 | 309 | 395 | 1 | 90 | 9.23e-21 | 92.4 |
| MS.gene74622.t1 | MTR_0566s0020 | 45.556 | 90 | 44 | 3 | 309 | 395 | 1 | 88 | 2.51e-14 | 72.8 |
| MS.gene74622.t1 | MTR_0195s0010 | 44.565 | 92 | 41 | 4 | 309 | 395 | 1 | 87 | 1.47e-13 | 70.9 |
| MS.gene74622.t1 | MTR_0195s0020 | 44.565 | 92 | 41 | 4 | 309 | 395 | 1 | 87 | 3.30e-13 | 72.4 |
| MS.gene74622.t1 | MTR_1g063810 | 62.500 | 48 | 18 | 0 | 342 | 389 | 37 | 84 | 1.10e-11 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene74622.t1 | AT3G07930 | 53.906 | 128 | 54 | 2 | 164 | 291 | 180 | 302 | 1.40e-38 | 144 |
| MS.gene74622.t1 | AT3G07930 | 57.265 | 117 | 45 | 2 | 164 | 280 | 296 | 407 | 9.09e-38 | 144 |
| MS.gene74622.t1 | AT3G07930 | 64.151 | 53 | 14 | 2 | 164 | 216 | 296 | 343 | 3.34e-14 | 74.3 |
| MS.gene74622.t1 | AT3G07930 | 66.667 | 48 | 11 | 2 | 164 | 211 | 296 | 338 | 7.39e-13 | 70.5 |
Find 116 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGAAAACACCGGATAATAAT+TGG | 0.173506 | 6.3:+22291898 | MS.gene74622:CDS |
| ACCTCTTGTATTTCCTCTTT+TGG | 0.193190 | 6.3:-22293833 | None:intergenic |
| TCTTCCAGCATCTATCTTTC+GGG | 0.215889 | 6.3:+22297114 | MS.gene74622:CDS |
| CTCTTCCAGCATCTATCTTT+CGG | 0.237703 | 6.3:+22297113 | MS.gene74622:CDS |
| TCTTCAACTTTCTGAAAATA+AGG | 0.272553 | 6.3:-22291582 | None:intergenic |
| CGAGAGCCATTGAAAATCTT+AGG | 0.283054 | 6.3:-22291786 | None:intergenic |
| TTGAAGATTTAGAACAGTTT+AGG | 0.299387 | 6.3:+22291712 | MS.gene74622:CDS |
| TCTTCAACTTCCTGAAAATA+AGG | 0.315866 | 6.3:-22291639 | None:intergenic |
| CCCAACTTCTGCTCATTCTA+AGG | 0.320731 | 6.3:+22298138 | MS.gene74622:CDS |
| TGGCCCTACTGTCACTTATT+CGG | 0.324877 | 6.3:+22297087 | MS.gene74622:CDS |
| CTGCCTTCGCCATGTTTGAT+TGG | 0.345401 | 6.3:+22296933 | MS.gene74622:CDS |
| TGCATGCAAGTTTCTGCGTT+TGG | 0.349543 | 6.3:-22293806 | None:intergenic |
| GCCTGAGCAAATGATGGTTT+TGG | 0.353973 | 6.3:-22297058 | None:intergenic |
| GGTTCTGCTGATACTGAAAC+TGG | 0.358460 | 6.3:-22296986 | None:intergenic |
| ACAGAATGTCACGACTGATA+TGG | 0.370581 | 6.3:+22298180 | MS.gene74622:CDS |
| TTTGATTGGCAAGCAGAGTT+GGG | 0.382470 | 6.3:+22296947 | MS.gene74622:CDS |
| GGGACTGATCGTTGTTCATT+CGG | 0.398713 | 6.3:-22298118 | None:intergenic |
| TAAGGAGACACGACCCTCTC+TGG | 0.408073 | 6.3:-22291564 | None:intergenic |
| CTGCCTGTGTTTCGATGGAT+TGG | 0.424955 | 6.3:-22298042 | None:intergenic |
| TCCTTAGAATGAGCAGAAGT+TGG | 0.426998 | 6.3:-22298139 | None:intergenic |
| CAAGAGGTAATTAAGACATT+AGG | 0.427686 | 6.3:+22293848 | MS.gene74622:CDS |
| TGTGGCCCGGCCTGACGATC+CGG | 0.433151 | 6.3:+22298279 | MS.gene74622:CDS |
| ATCGGATCCACCGGATCGTC+AGG | 0.441961 | 6.3:-22298289 | None:intergenic |
| CATCTATCAGCCTTAAGAAA+AGG | 0.442836 | 6.3:-22291858 | None:intergenic |
| TAAGGAGACACGACCCTTTG+TGG | 0.442932 | 6.3:-22291621 | None:intergenic |
| TTCTTAAGGCTGATAGATGT+AGG | 0.446534 | 6.3:+22291862 | MS.gene74622:CDS |
| GTTTGATTGGCAAGCAGAGT+TGG | 0.449306 | 6.3:+22296946 | MS.gene74622:CDS |
| TCAGAAGCTAAAGTAAGAAA+TGG | 0.449942 | 6.3:-22298235 | None:intergenic |
| CACGACTGATATGGCCCGTC+AGG | 0.457098 | 6.3:+22298189 | MS.gene74622:CDS |
| AGCTTCCAACCCTCGAAGAT+AGG | 0.466209 | 6.3:-22297170 | None:intergenic |
| GAAAACACCGGATAATAATT+GGG | 0.469834 | 6.3:+22291899 | MS.gene74622:CDS |
| ATCAGCAGAACCTGTCCCTC+TGG | 0.471458 | 6.3:+22296997 | MS.gene74622:CDS |
| TTTCAGTAAGTATGCGTACA+AGG | 0.478351 | 6.3:+22291440 | MS.gene74622:CDS |
| GAACCGCACTAAAGGTGAAC+AGG | 0.481639 | 6.3:+22292019 | MS.gene74622:CDS |
| CCTTAGAATGAGCAGAAGTT+GGG | 0.482174 | 6.3:-22298138 | None:intergenic |
| CATTAGGTCTTCAAGTGAAA+AGG | 0.482808 | 6.3:+22293864 | MS.gene74622:CDS |
| GAAAGTTGAAGAGTGTAAAG+TGG | 0.483269 | 6.3:+22291593 | MS.gene74622:CDS |
| AGGTGGATTCTTGTCGTGCT+AGG | 0.485309 | 6.3:+22291490 | MS.gene74622:CDS |
| TACAAAGAGTGTTGTTGAGG+TGG | 0.494694 | 6.3:+22291473 | MS.gene74622:CDS |
| TCATTTGCTCAGGCACTTCG+TGG | 0.498500 | 6.3:+22297067 | MS.gene74622:CDS |
| CACGGAAATGATACTCTTGA+AGG | 0.503438 | 6.3:-22291962 | None:intergenic |
| CGAAAGATAGATGCTGGAAG+AGG | 0.503533 | 6.3:-22297112 | None:intergenic |
| GTGAATACTTAGCCGGGACT+TGG | 0.505430 | 6.3:+22293912 | MS.gene74622:CDS |
| GATCCACCGGATCGTCAGGC+CGG | 0.505559 | 6.3:-22298285 | None:intergenic |
| CTTTCTCGTGAATACTTAGC+CGG | 0.505784 | 6.3:+22293905 | MS.gene74622:CDS |
| TTCACAAACTCATGAGATCC+AGG | 0.509661 | 6.3:+22298018 | MS.gene74622:CDS |
| CTTCCAGCATCTATCTTTCG+GGG | 0.512133 | 6.3:+22297115 | MS.gene74622:CDS |
| ATCCACCGGATCGTCAGGCC+GGG | 0.512756 | 6.3:-22298284 | None:intergenic |
| ACTAAGGATGCCTATCTTCG+AGG | 0.512906 | 6.3:+22297160 | MS.gene74622:CDS |
| AGTGGCTGCCTGTGTTTCGA+TGG | 0.514878 | 6.3:-22298047 | None:intergenic |
| ACTCTGAAGATGACGAGACT+AGG | 0.521203 | 6.3:+22298083 | MS.gene74622:CDS |
| CCCAAAACCATCATTTGCTC+AGG | 0.521395 | 6.3:+22297057 | MS.gene74622:CDS |
| GGCATCAAATGTGTGAGAAC+TGG | 0.522564 | 6.3:+22295706 | MS.gene74622:CDS |
| TTGCATGCAAGTACCAAAAG+AGG | 0.526068 | 6.3:+22293820 | MS.gene74622:CDS |
| GGATTCTTGTCGTGCTAGGA+AGG | 0.526763 | 6.3:+22291494 | MS.gene74622:CDS |
| AATGCAATAGCCAGAGGGAC+AGG | 0.526780 | 6.3:-22297007 | None:intergenic |
| GATGTAGGGAAGCTTACATA+AGG | 0.526950 | 6.3:+22291877 | MS.gene74622:CDS |
| CTCTGCTTGCCAATCAAACA+TGG | 0.527634 | 6.3:-22296942 | None:intergenic |
| GTGTTTCGATGGATTGGACC+TGG | 0.527689 | 6.3:-22298036 | None:intergenic |
| TCTTAAGGCTGATAGATGTA+GGG | 0.528906 | 6.3:+22291863 | MS.gene74622:CDS |
| GAAAATCGAAGAGTGTAAAG+TGG | 0.533714 | 6.3:+22291536 | MS.gene74622:CDS |
| CGAAGTGCCTGAGCAAATGA+TGG | 0.535765 | 6.3:-22297064 | None:intergenic |
| ATGCTACTGAACCGCACTAA+AGG | 0.536386 | 6.3:+22292011 | MS.gene74622:CDS |
| GGAACTCTGCTTATTTCCAT+CGG | 0.544100 | 6.3:+22299540 | MS.gene74622:intron |
| GGTGGATCCGATGCTACAAA+AGG | 0.545093 | 6.3:+22298300 | MS.gene74622:CDS |
| GGAGGCACCCAATTATTATC+CGG | 0.546937 | 6.3:-22291906 | None:intergenic |
| CTCTGAAGATGACGAGACTA+GGG | 0.546969 | 6.3:+22298084 | MS.gene74622:CDS |
| CATATAACAATCACCCTCCA+TGG | 0.550910 | 6.3:-22291987 | None:intergenic |
| AGTATCATTTCCGTGATCCA+TGG | 0.552016 | 6.3:+22291970 | MS.gene74622:CDS |
| TTCCAGCATCTATCTTTCGG+GGG | 0.553167 | 6.3:+22297116 | MS.gene74622:CDS |
| TTGATTGGCAAGCAGAGTTG+GGG | 0.558424 | 6.3:+22296948 | MS.gene74622:CDS |
| CGGCTAAGTATTCACGAGAA+AGG | 0.563641 | 6.3:-22293904 | None:intergenic |
| ATTCTTAACAACCTCCTGAC+GGG | 0.563864 | 6.3:-22298203 | None:intergenic |
| CTAAGGATGCCTATCTTCGA+GGG | 0.567804 | 6.3:+22297161 | MS.gene74622:CDS |
| TTTCTCGTGAATACTTAGCC+GGG | 0.570744 | 6.3:+22293906 | MS.gene74622:CDS |
| TAAAGTGGAGCATCCACAAA+GGG | 0.571179 | 6.3:+22291608 | MS.gene74622:CDS |
| TCACACATTTGATGCCATTG+TGG | 0.575385 | 6.3:-22295699 | None:intergenic |
| GCTGATACTGAAACTGGGAC+CGG | 0.579576 | 6.3:-22296980 | None:intergenic |
| GATCCGAATAAGTGACAGTA+GGG | 0.581296 | 6.3:-22297090 | None:intergenic |
| GTTGTCAATTCACATCACTA+AGG | 0.582499 | 6.3:+22297144 | MS.gene74622:CDS |
| TCTTACAAAGAGTGTTGTTG+AGG | 0.587653 | 6.3:+22291470 | MS.gene74622:CDS |
| GAACGAGACACGACCCTCTG+TGG | 0.587983 | 6.3:-22291678 | None:intergenic |
| AATTCTTAACAACCTCCTGA+CGG | 0.591071 | 6.3:-22298204 | None:intergenic |
| GGCCCGGCCTGACGATCCGG+TGG | 0.591867 | 6.3:+22298282 | MS.gene74622:CDS |
| GGATCCGAATAAGTGACAGT+AGG | 0.592642 | 6.3:-22297091 | None:intergenic |
| GACTGATATGGCCCGTCAGG+AGG | 0.593282 | 6.3:+22298192 | MS.gene74622:CDS |
| CAATCACCCTCCATGGATCA+CGG | 0.603020 | 6.3:-22291980 | None:intergenic |
| GGTCCAATCCATCGAAACAC+AGG | 0.610215 | 6.3:+22298039 | MS.gene74622:CDS |
| TCCAGCATCTATCTTTCGGG+GGG | 0.611424 | 6.3:+22297117 | MS.gene74622:CDS |
| GACCGAAAGTTGAAAAGCCT+AGG | 0.611563 | 6.3:+22291814 | MS.gene74622:CDS |
| TAAAGTGGAGCATCCAGAGA+GGG | 0.619283 | 6.3:+22291551 | MS.gene74622:CDS |
| TTCAGTAAGTATGCGTACAA+GGG | 0.620982 | 6.3:+22291441 | MS.gene74622:CDS |
| TTGTACGCATACTTACTGAA+AGG | 0.621933 | 6.3:-22291438 | None:intergenic |
| AGTCACATAAGTCCAAGTCC+CGG | 0.623457 | 6.3:-22293924 | None:intergenic |
| GAGCCATTGAAAATCTTAGG+AGG | 0.626770 | 6.3:-22291783 | None:intergenic |
| TTGCCAATCAAACATGGCGA+AGG | 0.631254 | 6.3:-22296936 | None:intergenic |
| TGATTGGCAAGCAGAGTTGG+GGG | 0.632724 | 6.3:+22296949 | MS.gene74622:CDS |
| GGAAGTTGAAGAGTGTAATG+TGG | 0.635335 | 6.3:+22291650 | MS.gene74622:CDS |
| ACCAAAAGAGGAAATACAAG+AGG | 0.636548 | 6.3:+22293832 | MS.gene74622:CDS |
| GTAAAGTGGAGCATCCAGAG+AGG | 0.637261 | 6.3:+22291550 | MS.gene74622:CDS |
| GCTACAAAAGGAGATTGAGA+TGG | 0.639934 | 6.3:+22298312 | MS.gene74622:CDS |
| GTACCTGTTCACCTTTAGTG+CGG | 0.640154 | 6.3:-22292022 | None:intergenic |
| TAATGTGGAGCATCCACAGA+GGG | 0.640527 | 6.3:+22291665 | MS.gene74622:CDS |
| ATCATTTCCGTGATCCATGG+AGG | 0.642513 | 6.3:+22291973 | MS.gene74622:CDS |
| TTGACTAATGCAATAGCCAG+AGG | 0.644626 | 6.3:-22297013 | None:intergenic |
| AGCACTCGTTTGCGCCACAA+TGG | 0.654900 | 6.3:+22295685 | MS.gene74622:intron |
| TCATTTCCGTGATCCATGGA+GGG | 0.656462 | 6.3:+22291974 | MS.gene74622:CDS |
| TGACTAATGCAATAGCCAGA+GGG | 0.658824 | 6.3:-22297012 | None:intergenic |
| AGCTTACATAAGGAAAACAC+CGG | 0.664968 | 6.3:+22291887 | MS.gene74622:CDS |
| TCAGTCGTGACATTCTGTAG+AGG | 0.666764 | 6.3:-22298175 | None:intergenic |
| GTGACTGAACTGCACAGTGT+TGG | 0.673794 | 6.3:+22293941 | MS.gene74622:CDS |
| GTTCTGCTGATACTGAAACT+GGG | 0.673857 | 6.3:-22296985 | None:intergenic |
| ACGAGAGGAGGTGTAGAACG+TGG | 0.676331 | 6.3:-22291927 | None:intergenic |
| GTAAAGTGGAGCATCCACAA+AGG | 0.695425 | 6.3:+22291607 | MS.gene74622:CDS |
| AGAGGAGGTGTAGAACGTGG+AGG | 0.751771 | 6.3:-22291924 | None:intergenic |
| GTAATGTGGAGCATCCACAG+AGG | 0.810807 | 6.3:+22291664 | MS.gene74622:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.3 | gene | 22291396 | 22299576 | 22291396 | ID=MS.gene74622 |
| chr6.3 | mRNA | 22291396 | 22299576 | 22291396 | ID=MS.gene74622.t1;Parent=MS.gene74622 |
| chr6.3 | exon | 22291396 | 22292040 | 22291396 | ID=MS.gene74622.t1.exon1;Parent=MS.gene74622.t1 |
| chr6.3 | CDS | 22291396 | 22292040 | 22291396 | ID=cds.MS.gene74622.t1;Parent=MS.gene74622.t1 |
| chr6.3 | exon | 22293770 | 22293966 | 22293770 | ID=MS.gene74622.t1.exon2;Parent=MS.gene74622.t1 |
| chr6.3 | CDS | 22293770 | 22293966 | 22293770 | ID=cds.MS.gene74622.t1;Parent=MS.gene74622.t1 |
| chr6.3 | exon | 22295687 | 22295727 | 22295687 | ID=MS.gene74622.t1.exon3;Parent=MS.gene74622.t1 |
| chr6.3 | CDS | 22295687 | 22295727 | 22295687 | ID=cds.MS.gene74622.t1;Parent=MS.gene74622.t1 |
| chr6.3 | exon | 22296903 | 22297182 | 22296903 | ID=MS.gene74622.t1.exon4;Parent=MS.gene74622.t1 |
| chr6.3 | CDS | 22296903 | 22297182 | 22296903 | ID=cds.MS.gene74622.t1;Parent=MS.gene74622.t1 |
| chr6.3 | exon | 22298009 | 22298333 | 22298009 | ID=MS.gene74622.t1.exon5;Parent=MS.gene74622.t1 |
| chr6.3 | CDS | 22298009 | 22298333 | 22298009 | ID=cds.MS.gene74622.t1;Parent=MS.gene74622.t1 |
| chr6.3 | exon | 22299541 | 22299576 | 22299541 | ID=MS.gene74622.t1.exon6;Parent=MS.gene74622.t1 |
| chr6.3 | CDS | 22299541 | 22299576 | 22299541 | ID=cds.MS.gene74622.t1;Parent=MS.gene74622.t1 |
| Gene Sequence |
| Protein sequence |