AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene057260


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene057260.t1 MTR_3g092980 98.624 218 3 0 1 218 1 218 8.22e-156 430
MS.gene057260.t1 MTR_3g092980 97.727 220 3 1 1 218 1 220 7.19e-154 426
MS.gene057260.t1 MTR_3g092970 77.193 228 41 4 1 218 1 227 3.75e-108 310
MS.gene057260.t1 MTR_7g088680 69.333 150 41 2 69 218 59 203 2.70e-67 206
MS.gene057260.t1 MTR_3g093750 66.935 124 25 2 97 218 418 527 1.43e-42 150
MS.gene057260.t1 MTR_3g093720 92.857 42 3 0 176 217 215 256 1.72e-18 82.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene057260.t1 AT3G49470 64.091 220 74 3 1 218 1 217 9.94e-77 230
MS.gene057260.t1 AT3G49470 63.507 211 72 3 1 209 1 208 2.05e-71 217
MS.gene057260.t1 AT4G10480 73.548 155 40 1 64 217 57 211 1.27e-69 212
MS.gene057260.t1 AT4G10480 74.342 152 38 1 67 217 59 210 2.76e-69 211
MS.gene057260.t1 AT1G33040 69.935 153 45 1 67 218 57 209 9.03e-67 204
MS.gene057260.t1 AT3G12390 66.667 150 47 1 69 218 57 203 4.05e-62 192
MS.gene057260.t1 AT5G13850 70.395 152 43 1 69 218 53 204 3.24e-61 190

Find 64 sgRNAs with CRISPR-Local

Find 191 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAGAGACCTACGTTATATT+TGG 0.142242 3.2:+78191200 MS.gene057260:CDS
ATAACGTAGGTCTCTGAATT+TGG 0.208217 3.2:-78191194 None:intergenic
CAGAGACCTACGTTATATTT+GGG 0.269261 3.2:+78191201 MS.gene057260:CDS
TCAACCTCCTCTTCCTCTTC+AGG 0.290554 3.2:-78191347 None:intergenic
GCCATTATAGATCCCATATC+TGG 0.303001 3.2:-78191287 None:intergenic
CACAAGCTGCTCAACAGTTC+AGG 0.364720 3.2:+78191261 MS.gene057260:CDS
ACAGTTCAGGATGCCAGATA+TGG 0.369124 3.2:+78191274 MS.gene057260:CDS
GCCAGATATGGGATCTATAA+TGG 0.384072 3.2:+78191286 MS.gene057260:CDS
AACCCATTGATGGTGTTACT+AGG 0.392278 3.2:+78190825 MS.gene057260:CDS
TACCCTAGTAACACCATCAA+TGG 0.408223 3.2:-78190828 None:intergenic
TTTGGACTCTTGAAGACATC+AGG 0.416876 3.2:-78191176 None:intergenic
TCGTTATCATCCTCGACAAT+AGG 0.426214 3.2:-78189271 None:intergenic
AGGCTCTCAAAACTCACAAT+GGG 0.426765 3.2:+78191444 MS.gene057260:CDS
TTTGAGAGCCTTGACAGCCT+TGG 0.440959 3.2:-78191432 None:intergenic
GAAGAGGAGGTTGATGAAAC+TGG 0.453955 3.2:+78191356 MS.gene057260:CDS
CGTCGACGGAGGGAAGTTGT+TGG 0.458861 3.2:-78189124 None:intergenic
TCGAAAAGCAATGTTGAAGC+TGG 0.458999 3.2:+78190796 MS.gene057260:CDS
TTGTTGGTCGGTGGCTTCGT+CGG 0.466936 3.2:-78189108 None:intergenic
CTTGAGCGTTGTTTCGTCGA+CGG 0.472022 3.2:-78189138 None:intergenic
GAGCTGGTAATGACACAAGC+TGG 0.474762 3.2:+78191398 MS.gene057260:CDS
GTCGGCGGCAGCGTCAATGA+TGG 0.479255 3.2:-78189090 None:intergenic
ACTCACAATGGGGACATTGT+TGG 0.489937 3.2:+78191455 MS.gene057260:CDS
GTGTCTGCAACTGAGAGCTC+AGG 0.502334 3.2:-78191241 None:intergenic
ACCCTAGTAACACCATCAAT+GGG 0.510907 3.2:-78190827 None:intergenic
TTAATTAGTTAGTTCCATGA+TGG 0.513698 3.2:-78191480 None:intergenic
CAGTTCAGGATGCCAGATAT+GGG 0.516112 3.2:+78191275 MS.gene057260:CDS
CTGGGACTAAAACCCATTGA+TGG 0.518737 3.2:+78190815 MS.gene057260:CDS
ACCCATTGATGGTGTTACTA+GGG 0.519807 3.2:+78190826 MS.gene057260:CDS
AAATGGAAAACCTGGGGAAG+TGG 0.520651 3.2:-78189167 None:intergenic
AGCACAGCCTGAAGAGGAAG+AGG 0.523112 3.2:+78191340 MS.gene057260:CDS
TCGGCGGCAGCGTCAATGAT+GGG 0.536510 3.2:-78189089 None:intergenic
GTCAAAAGCCAAGGCTGTCA+AGG 0.539706 3.2:+78191424 MS.gene057260:CDS
ATATCCTTAGCCATGTCTCC+AGG 0.541939 3.2:+78189065 None:intergenic
CGAAAAGCAATGTTGAAGCT+GGG 0.542413 3.2:+78190797 MS.gene057260:CDS
CAAGAACAAACCACTTCCCC+AGG 0.549171 3.2:+78189157 MS.gene057260:CDS
TCATTACCAGCTCAATGTCG+TGG 0.549319 3.2:-78191388 None:intergenic
AAGGCTCTCAAAACTCACAA+TGG 0.552612 3.2:+78191443 MS.gene057260:CDS
GGACATTGTTGGTGCCATCA+TGG 0.557792 3.2:+78191466 MS.gene057260:CDS
GCAGCGTCAATGATGGGACC+TGG 0.558575 3.2:-78189083 None:intergenic
GGAGGGAAGTTGTTGGTCGG+TGG 0.561823 3.2:-78189117 None:intergenic
GAACAAGGTGCTGCAGCTGA+TGG 0.562947 3.2:+78191317 MS.gene057260:CDS
AGCGTTGTTTCGTCGACGGA+GGG 0.566503 3.2:-78189134 None:intergenic
AGCTGGTAATGACACAAGCT+GGG 0.566806 3.2:+78191399 MS.gene057260:CDS
GAGCGTTGTTTCGTCGACGG+AGG 0.566873 3.2:-78189135 None:intergenic
AGCTGGGGTGTCAAAAGCCA+AGG 0.583545 3.2:+78191415 MS.gene057260:CDS
GGAGGCCCACGACATTGAGC+TGG 0.585026 3.2:+78191382 MS.gene057260:CDS
ACAGCCTGAAGAGGAAGAGG+AGG 0.588386 3.2:+78191343 MS.gene057260:CDS
GACGGAGGGAAGTTGTTGGT+CGG 0.592423 3.2:-78189120 None:intergenic
TTGGTCGGTGGCTTCGTCGG+CGG 0.592563 3.2:-78189105 None:intergenic
CATTACCAGCTCAATGTCGT+GGG 0.601311 3.2:-78191387 None:intergenic
TGATGGAGCACAGCCTGAAG+AGG 0.604282 3.2:+78191334 MS.gene057260:CDS
AATGATGGGACCTGGAGACA+TGG 0.605793 3.2:-78189075 None:intergenic
AGAGACCTACGTTATATTTG+GGG 0.608062 3.2:+78191202 MS.gene057260:CDS
GACCTACGTTATATTTGGGG+AGG 0.613942 3.2:+78191205 MS.gene057260:CDS
GGAGGTTGATGAAACTGGCG+TGG 0.623179 3.2:+78191361 MS.gene057260:CDS
CGAGATGTAGGTGGTACTGA+AGG 0.629687 3.2:+78190743 MS.gene057260:intron
TAACGACAAAGACGAATCTG+AGG 0.653105 3.2:+78189294 MS.gene057260:CDS
AGATGATGCTCCTATTGTCG+AGG 0.659014 3.2:+78189261 MS.gene057260:CDS
GGTTGATGAAACTGGCGTGG+AGG 0.659813 3.2:+78191364 MS.gene057260:CDS
TGCCTCCCCAAATATAACGT+AGG 0.662269 3.2:-78191207 None:intergenic
GAAGACGACGAATCTCCTCA+AGG 0.684211 3.2:+78189322 MS.gene057260:CDS
GGCTCTCAAAACTCACAATG+GGG 0.691219 3.2:+78191445 MS.gene057260:CDS
ATAATGGCAAAACAAGAACA+AGG 0.704410 3.2:+78191302 MS.gene057260:CDS
GCTGGTAATGACACAAGCTG+GGG 0.796663 3.2:+78191400 MS.gene057260:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTTAATTTTTTTTTT+TGG + chr3.2:78189843-78189862 MS.gene057260:intron 0.0%
!!! TTTTGTATTTAAATTAGTTA+GGG + chr3.2:78189911-78189930 MS.gene057260:intron 10.0%
!!! TTTTGTATTTAAATTAGTTA+GGG - chr3.2:78189930-78189911 None:intergenic 10.0%
!! CAAAATAGAGAATAAATATA+TGG - chr3.2:78189204-78189223 None:intergenic 15.0%
!! TATTTATTAACATCGTTTAA+TGG + chr3.2:78189361-78189380 MS.gene057260:intron 15.0%
!! TTGAATCAAATTAAAAATGA+AGG - chr3.2:78190449-78190468 None:intergenic 15.0%
!! TTTGTATTTAAATTAGTTAG+GGG + chr3.2:78189912-78189931 MS.gene057260:intron 15.0%
!! TTTGTATTTAAATTAGTTAG+GGG - chr3.2:78189931-78189912 None:intergenic 15.0%
!!! CAAGAATTCTAAAAAAATAA+AGG - chr3.2:78190058-78190077 None:intergenic 15.0%
!!! CATATATTTATTCTCTATTT+TGG + chr3.2:78189202-78189221 MS.gene057260:intron 15.0%
!!! GTTTTGTATTTAAATTAGTT+AGG + chr3.2:78189910-78189929 MS.gene057260:intron 15.0%
!!! GTTTTGTATTTAAATTAGTT+AGG - chr3.2:78189929-78189910 None:intergenic 15.0%
!!! TATCTGTTGATTTATTTTTT+TGG + chr3.2:78190716-78190735 MS.gene057260:intron 15.0%
!!! TATTTTCTCAAATTATTGTT+GGG - chr3.2:78190361-78190380 None:intergenic 15.0%
!!! TCATTTTCTCAAAAATTTAT+GGG + chr3.2:78190216-78190235 MS.gene057260:intron 15.0%
!! ATTGAAGATACATAAGAAAA+AGG - chr3.2:78190662-78190681 None:intergenic 20.0%
!! TTGTATTTAAATTAGTTAGG+GGG + chr3.2:78189913-78189932 MS.gene057260:intron 20.0%
!! TTGTATTTAAATTAGTTAGG+GGG - chr3.2:78189932-78189913 None:intergenic 20.0%
!!! ATCAAAGAGTTTTAAAAAGT+AGG - chr3.2:78189987-78190006 None:intergenic 20.0%
!!! CTATTTTCTCAAATTATTGT+TGG - chr3.2:78190362-78190381 None:intergenic 20.0%
!!! GTCATTTTCTCAAAAATTTA+TGG + chr3.2:78190215-78190234 MS.gene057260:intron 20.0%
!!! TAATTTTTTTTTTTGGCCTT+GGG + chr3.2:78189850-78189869 MS.gene057260:intron 20.0%
!!! TTAATTTTTTTTTTTGGCCT+TGG + chr3.2:78189849-78189868 MS.gene057260:intron 20.0%
!!! TTTTTTAGAATTCTTGTTCT+GGG + chr3.2:78190062-78190081 MS.gene057260:intron 20.0%
!!! TTTTTTTAGAATTCTTGTTC+TGG + chr3.2:78190061-78190080 MS.gene057260:intron 20.0%
! AACTATAATCTATGTTGCAT+AGG - chr3.2:78190101-78190120 None:intergenic 25.0%
! AATAAATATATGGAATCCGA+TGG - chr3.2:78189194-78189213 None:intergenic 25.0%
! ATGAAAAACATAACCTAACA+AGG - chr3.2:78191149-78191168 None:intergenic 25.0%
! CTATTCTCACATCATTATAA+AGG + chr3.2:78190481-78190500 MS.gene057260:intron 25.0%
! GAATTACTTTATACCTTGTT+AGG + chr3.2:78191133-78191152 MS.gene057260:intron 25.0%
! TTAATTAGTTAGTTCCATGA+TGG - chr3.2:78191483-78191502 None:intergenic 25.0%
!!! AACCTTAGCTTTTACTTTTT+AGG + chr3.2:78189669-78189688 MS.gene057260:intron 25.0%
!!! AATTTTTTTTTTTGGCCTTG+GGG + chr3.2:78189851-78189870 MS.gene057260:intron 25.0%
AAATCAACAGATAACATCAG+AGG - chr3.2:78190709-78190728 None:intergenic 30.0%
AATCAACAGATAACATCAGA+GGG - chr3.2:78190708-78190727 None:intergenic 30.0%
AGCCTAAAAAGTAAAAGCTA+AGG - chr3.2:78189674-78189693 None:intergenic 30.0%
ATAATGGCAAAACAAGAACA+AGG + chr3.2:78191302-78191321 MS.gene057260:CDS 30.0%
ATGCACATTGTGATTTATCT+AGG - chr3.2:78190637-78190656 None:intergenic 30.0%
GACAATGCAATTACATGTAT+CGG - chr3.2:78190198-78190217 None:intergenic 30.0%
TAATCTATGTTGCATAGGTA+CGG - chr3.2:78190096-78190115 None:intergenic 30.0%
TACTATAAGATTCTACCTTG+AGG - chr3.2:78189340-78189359 None:intergenic 30.0%
TGCCAAAGATTCAATACTTA+GGG + chr3.2:78189883-78189902 MS.gene057260:intron 30.0%
TGCCAAAGATTCAATACTTA+GGG - chr3.2:78189902-78189883 None:intergenic 30.0%
! TATTGAATCTTTGGCAGTTT+TGG + chr3.2:78189777-78189796 MS.gene057260:intron 30.0%
! TATTGAATCTTTGGCAGTTT+TGG - chr3.2:78189796-78189777 None:intergenic 30.0%
! TTTAGGCTTAATTGCACTTT+TGG + chr3.2:78189686-78189705 MS.gene057260:intron 30.0%
!! AGAAAGTGTCACAAATTTCA+GGG + chr3.2:78190582-78190601 MS.gene057260:intron 30.0%
!!! ATTTTTTTTTTTGGCCTTGG+GGG + chr3.2:78189852-78189871 MS.gene057260:intron 30.0%
!!! CTGTTTTCTGTTTTTTCCTT+AGG + chr3.2:78189234-78189253 MS.gene057260:intron 30.0%
AAAGATAACCTATGAAGCAC+GGG - chr3.2:78190253-78190272 None:intergenic 35.0%
AATCTATGTTGCATAGGTAC+GGG - chr3.2:78190095-78190114 None:intergenic 35.0%
AGAACAAGGCATAGTACAAA+TGG - chr3.2:78189436-78189455 None:intergenic 35.0%
AGAGACCTACGTTATATTTG+GGG + chr3.2:78191202-78191221 MS.gene057260:CDS 35.0%
ATAACGTAGGTCTCTGAATT+TGG - chr3.2:78191197-78191216 None:intergenic 35.0%
ATATGGAATCCGATGGAAAA+TGG - chr3.2:78189187-78189206 None:intergenic 35.0%
ATCAGGTATATATCTGGTAC+AGG - chr3.2:78189508-78189527 None:intergenic 35.0%
CAAAGATAACCTATGAAGCA+CGG - chr3.2:78190254-78190273 None:intergenic 35.0%
CAGAGACCTACGTTATATTT+GGG + chr3.2:78191201-78191220 MS.gene057260:CDS 35.0%
CAGGTTCTTGCAAGTAAAAT+CGG + chr3.2:78189475-78189494 MS.gene057260:intron 35.0%
CAGTGCTTCATAGATAAGAA+TGG - chr3.2:78190299-78190318 None:intergenic 35.0%
CCAAAGATTCAATACTTAGG+GGG + chr3.2:78189885-78189904 MS.gene057260:intron 35.0%
CCAAAGATTCAATACTTAGG+GGG - chr3.2:78189904-78189885 None:intergenic 35.0%
CGTAGAGGAATTTAGACTAA+TGG + chr3.2:78190901-78190920 MS.gene057260:intron 35.0%
CTGCCAAAGATTCAATACTT+AGG + chr3.2:78189882-78189901 MS.gene057260:intron 35.0%
CTGCCAAAGATTCAATACTT+AGG - chr3.2:78189901-78189882 None:intergenic 35.0%
GCCAAAGATTCAATACTTAG+GGG + chr3.2:78189884-78189903 MS.gene057260:intron 35.0%
GCCAAAGATTCAATACTTAG+GGG - chr3.2:78189903-78189884 None:intergenic 35.0%
GGTCATAGTTATGACCTATA+GGG + chr3.2:78190603-78190622 MS.gene057260:intron 35.0%
TATCGTACTTGGGTTTCTAT+TGG + chr3.2:78189539-78189558 MS.gene057260:intron 35.0%
TCAGAGACCTACGTTATATT+TGG + chr3.2:78191200-78191219 MS.gene057260:CDS 35.0%
! AAGTCCAAAGTGCTATCAAA+TGG + chr3.2:78190950-78190969 MS.gene057260:intron 35.0%
! AGTAGGCTTAATTGCACTTT+TGG - chr3.2:78189970-78189989 None:intergenic 35.0%
! CCCTATCTTTTCAAAACTTG+CGG + chr3.2:78189711-78189730 MS.gene057260:intron 35.0%
! GCAAAGTGCAATGCTAATTT+TGG + chr3.2:78190552-78190571 MS.gene057260:intron 35.0%
!! CAGAAAGTGTCACAAATTTC+AGG + chr3.2:78190581-78190600 MS.gene057260:intron 35.0%
!!! ACCGCAAGTTTTGAAAAGAT+AGG - chr3.2:78189715-78189734 None:intergenic 35.0%
!!! CCGCAAGTTTTGAAAAGATA+GGG - chr3.2:78189714-78189733 None:intergenic 35.0%
!!! CGCAAGTTTTGAAAAGATAG+GGG - chr3.2:78189713-78189732 None:intergenic 35.0%
!!! GCAAGTTTTGAAAAGATAGG+GGG - chr3.2:78189712-78189731 None:intergenic 35.0%
!!! TATCGGTTTTGTTTCAGTGT+CGG - chr3.2:78190181-78190200 None:intergenic 35.0%
!!! TTTTTTGGACTTCGAGATGT+AGG + chr3.2:78190731-78190750 MS.gene057260:intron 35.0%
!!! TTTTTTTTTTTGGCCTTGGG+GGG + chr3.2:78189853-78189872 MS.gene057260:intron 35.0%
AAGGCTCTCAAAACTCACAA+TGG + chr3.2:78191443-78191462 MS.gene057260:CDS 40.0%
ACCCAAGTACGATACACATA+CGG - chr3.2:78189533-78189552 None:intergenic 40.0%
ACCCTAGTAACACCATCAAT+GGG - chr3.2:78190830-78190849 None:intergenic 40.0%
ACGGGTATCAGGTATATATC+TGG - chr3.2:78189514-78189533 None:intergenic 40.0%
AGGCTCTCAAAACTCACAAT+GGG + chr3.2:78191444-78191463 MS.gene057260:CDS 40.0%
ATTTGGGGAGGCAAAAATAG+AGG + chr3.2:78191217-78191236 MS.gene057260:CDS 40.0%
CACGTTCTTTCTGTGATCTA+TGG + chr3.2:78191089-78191108 MS.gene057260:intron 40.0%
CCCTATCTTTCCAAAACTTG+CGG - chr3.2:78189945-78189964 None:intergenic 40.0%
CGAAAAGCAATGTTGAAGCT+GGG + chr3.2:78190797-78190816 MS.gene057260:CDS 40.0%
CGATGGAAAATGGAAAACCT+GGG - chr3.2:78189177-78189196 None:intergenic 40.0%
CTGTTGTCAAATAGACGTAG+AGG + chr3.2:78190886-78190905 MS.gene057260:intron 40.0%
GATGGAAAATGGAAAACCTG+GGG - chr3.2:78189176-78189195 None:intergenic 40.0%
GCCAGATATGGGATCTATAA+TGG + chr3.2:78191286-78191305 MS.gene057260:CDS 40.0%
GCCATTATAGATCCCATATC+TGG - chr3.2:78191290-78191309 None:intergenic 40.0%
GCTATTGTCATGTAGCACAA+TGG + chr3.2:78190984-78191003 MS.gene057260:intron 40.0%
GGGTCATAGTTATGACCTAT+AGG + chr3.2:78190602-78190621 MS.gene057260:intron 40.0%
GTTCTTTCTGTGATCTATGG+TGG + chr3.2:78191092-78191111 MS.gene057260:intron 40.0%
TAACGACAAAGACGAATCTG+AGG + chr3.2:78189294-78189313 MS.gene057260:CDS 40.0%
TACCCTAGTAACACCATCAA+TGG - chr3.2:78190831-78190850 None:intergenic 40.0%
TCGAAAAGCAATGTTGAAGC+TGG + chr3.2:78190796-78190815 MS.gene057260:CDS 40.0%
TCGTTATCATCCTCGACAAT+AGG - chr3.2:78189274-78189293 None:intergenic 40.0%
TCTAGGTCAAAAAGCCCTAT+AGG - chr3.2:78190620-78190639 None:intergenic 40.0%
TTTGGACTCTTGAAGACATC+AGG - chr3.2:78191179-78191198 None:intergenic 40.0%
! AGAGGGTACATGTAAAACTC+AGG + chr3.2:78189456-78189475 MS.gene057260:intron 40.0%
! CCAGGTTTTCCATTTTCCAT+CGG + chr3.2:78189175-78189194 MS.gene057260:intron 40.0%
! GTACTATGCCTTGTTCTAGA+GGG + chr3.2:78189439-78189458 MS.gene057260:intron 40.0%
! TGTACTATGCCTTGTTCTAG+AGG + chr3.2:78189438-78189457 MS.gene057260:intron 40.0%
!! AACCCATTGATGGTGTTACT+AGG + chr3.2:78190825-78190844 MS.gene057260:CDS 40.0%
!! ACCCATTGATGGTGTTACTA+GGG + chr3.2:78190826-78190845 MS.gene057260:CDS 40.0%
!! CCCCCTAAGTATTGAATCTT+TGG + chr3.2:78189768-78189787 MS.gene057260:intron 40.0%
!! CCCCCTAAGTATTGAATCTT+TGG - chr3.2:78189787-78189768 None:intergenic 40.0%
!! TACATGTACCCTCTAGAACA+AGG - chr3.2:78189450-78189469 None:intergenic 40.0%
!!! ACCGCAAGTTTTGGAAAGAT+AGG + chr3.2:78189941-78189960 MS.gene057260:intron 40.0%
!!! ATCGGTTTTGTTTCAGTGTC+GGG - chr3.2:78190180-78190199 None:intergenic 40.0%
!!! CCGCAAGTTTTGGAAAGATA+GGG + chr3.2:78189942-78189961 MS.gene057260:intron 40.0%
!!! CGCAAGTTTTGGAAAGATAG+GGG + chr3.2:78189943-78189962 MS.gene057260:intron 40.0%
!!! GCAAGTTTTGGAAAGATAGG+GGG + chr3.2:78189944-78189963 MS.gene057260:intron 40.0%
AAATGGAAAACCTGGGGAAG+TGG - chr3.2:78189170-78189189 None:intergenic 45.0%
ACAGTTCAGGATGCCAGATA+TGG + chr3.2:78191274-78191293 MS.gene057260:CDS 45.0%
ACCCGTATGTGTATCGTACT+TGG + chr3.2:78189528-78189547 MS.gene057260:intron 45.0%
ACGATACACATACGGGTATC+AGG - chr3.2:78189525-78189544 None:intergenic 45.0%
ACTCACAATGGGGACATTGT+TGG + chr3.2:78191455-78191474 MS.gene057260:CDS 45.0%
AGATGATGCTCCTATTGTCG+AGG + chr3.2:78189261-78189280 MS.gene057260:CDS 45.0%
ATGACACGTGCACCTCATTT+AGG - chr3.2:78189824-78189843 None:intergenic 45.0%
ATTGACACGTGTCGAACAAC+GGG - chr3.2:78190156-78190175 None:intergenic 45.0%
CAGTTCAGGATGCCAGATAT+GGG + chr3.2:78191275-78191294 MS.gene057260:CDS 45.0%
CATTACCAGCTCAATGTCGT+GGG - chr3.2:78191390-78191409 None:intergenic 45.0%
CATTGACACGTGTCGAACAA+CGG - chr3.2:78190157-78190176 None:intergenic 45.0%
CCCAAGTACGATACACATAC+GGG - chr3.2:78189532-78189551 None:intergenic 45.0%
CCCGTATGTGTATCGTACTT+GGG + chr3.2:78189529-78189548 MS.gene057260:intron 45.0%
CCGATGGAAAATGGAAAACC+TGG - chr3.2:78189178-78189197 None:intergenic 45.0%
CTGGGACTAAAACCCATTGA+TGG + chr3.2:78190815-78190834 MS.gene057260:CDS 45.0%
GACCTACGTTATATTTGGGG+AGG + chr3.2:78191205-78191224 MS.gene057260:CDS 45.0%
GGCTCTCAAAACTCACAATG+GGG + chr3.2:78191445-78191464 MS.gene057260:CDS 45.0%
TCACGAATCGCGAAAGATAG+TGG - chr3.2:78191022-78191041 None:intergenic 45.0%
TCATTACCAGCTCAATGTCG+TGG - chr3.2:78191391-78191410 None:intergenic 45.0%
TGACACGTGCACCTCATTTA+GGG - chr3.2:78189823-78189842 None:intergenic 45.0%
TGCCTCCCCAAATATAACGT+AGG - chr3.2:78191210-78191229 None:intergenic 45.0%
TGTCTGTGTCATGTTGCTGT+CGG + chr3.2:78190390-78190409 MS.gene057260:intron 45.0%
TTTGGACTTCGAGATGTAGG+TGG + chr3.2:78190734-78190753 MS.gene057260:intron 45.0%
! AGCTGGTAATGACACAAGCT+GGG + chr3.2:78191399-78191418 MS.gene057260:CDS 45.0%
! GACGCCATTTGATAGCACTT+TGG - chr3.2:78190957-78190976 None:intergenic 45.0%
! GGAGCATCATCTTCTTCCTA+AGG - chr3.2:78189253-78189272 None:intergenic 45.0%
! TCAGAGGGCACACATGTATA+TGG - chr3.2:78190693-78190712 None:intergenic 45.0%
!! GAAGAGGAGGTTGATGAAAC+TGG + chr3.2:78191356-78191375 MS.gene057260:CDS 45.0%
!! TCTGTGATCTATGGTGGATG+AGG + chr3.2:78191098-78191117 MS.gene057260:intron 45.0%
CAAGAACAAACCACTTCCCC+AGG + chr3.2:78189157-78189176 MS.gene057260:CDS 50.0%
CACAAGCTGCTCAACAGTTC+AGG + chr3.2:78191261-78191280 MS.gene057260:CDS 50.0%
GAAGACGACGAATCTCCTCA+AGG + chr3.2:78189322-78189341 MS.gene057260:CDS 50.0%
GTCAAAAGCCAAGGCTGTCA+AGG + chr3.2:78191424-78191443 MS.gene057260:CDS 50.0%
GTCATGTTGCTGTCGGACAT+TGG + chr3.2:78190397-78190416 MS.gene057260:intron 50.0%
TCAACCTCCTCTTCCTCTTC+AGG - chr3.2:78191350-78191369 None:intergenic 50.0%
TGTCTTTGCCCGTGCTTCAT+AGG + chr3.2:78190242-78190261 MS.gene057260:intron 50.0%
TTCGCGATTCGTGATCGACA+AGG + chr3.2:78191028-78191047 MS.gene057260:intron 50.0%
TTTGAGAGCCTTGACAGCCT+TGG - chr3.2:78191435-78191454 None:intergenic 50.0%
! CGAGATGTAGGTGGTACTGA+AGG + chr3.2:78190743-78190762 MS.gene057260:intron 50.0%
! CTTGAGCGTTGTTTCGTCGA+CGG - chr3.2:78189141-78189160 None:intergenic 50.0%
! GAGCTGGTAATGACACAAGC+TGG + chr3.2:78191398-78191417 MS.gene057260:CDS 50.0%
! GCTGGTAATGACACAAGCTG+GGG + chr3.2:78191400-78191419 MS.gene057260:CDS 50.0%
!! GGACATTGTTGGTGCCATCA+TGG + chr3.2:78191466-78191485 MS.gene057260:CDS 50.0%
!! GTGATCTATGGTGGATGAGG+AGG + chr3.2:78191101-78191120 MS.gene057260:intron 50.0%
ACAGCCTGAAGAGGAAGAGG+AGG + chr3.2:78191343-78191362 MS.gene057260:CDS 55.0%
AGCACAGCCTGAAGAGGAAG+AGG + chr3.2:78191340-78191359 MS.gene057260:CDS 55.0%
GACGGAGGGAAGTTGTTGGT+CGG - chr3.2:78189123-78189142 None:intergenic 55.0%
GTGTCTGCAACTGAGAGCTC+AGG - chr3.2:78191244-78191263 None:intergenic 55.0%
GTTGCTGTCGGACATTGGCA+CGG + chr3.2:78190402-78190421 MS.gene057260:intron 55.0%
TGATGGAGCACAGCCTGAAG+AGG + chr3.2:78191334-78191353 MS.gene057260:CDS 55.0%
TTGTTGGTCGGTGGCTTCGT+CGG - chr3.2:78189111-78189130 None:intergenic 55.0%
! AGCGTTGTTTCGTCGACGGA+GGG - chr3.2:78189137-78189156 None:intergenic 55.0%
! AGCTGGGGTGTCAAAAGCCA+AGG + chr3.2:78191415-78191434 MS.gene057260:CDS 55.0%
! GGGGCTGTAACCGCAAGTTT+TGG + chr3.2:78189932-78189951 MS.gene057260:intron 55.0%
!! GAACAAGGTGCTGCAGCTGA+TGG + chr3.2:78191317-78191336 MS.gene057260:CDS 55.0%
!! GGAGGTTGATGAAACTGGCG+TGG + chr3.2:78191361-78191380 MS.gene057260:CDS 55.0%
!! GGTTGATGAAACTGGCGTGG+AGG + chr3.2:78191364-78191383 MS.gene057260:CDS 55.0%
CGTCGACGGAGGGAAGTTGT+TGG - chr3.2:78189127-78189146 None:intergenic 60.0%
CTGACGCGGCACCCTAAATG+AGG + chr3.2:78189809-78189828 MS.gene057260:intron 60.0%
GGAGGGAAGTTGTTGGTCGG+TGG - chr3.2:78189120-78189139 None:intergenic 60.0%
TCGGCGGCAGCGTCAATGAT+GGG - chr3.2:78189092-78189111 None:intergenic 60.0%
! GAGCGTTGTTTCGTCGACGG+AGG - chr3.2:78189138-78189157 None:intergenic 60.0%
! GCAGCGTCAATGATGGGACC+TGG - chr3.2:78189086-78189105 None:intergenic 60.0%
!! TTGGCAGTTTTGGCCCCCCA+AGG - chr3.2:78189869-78189888 None:intergenic 60.0%
GGAGGCCCACGACATTGAGC+TGG + chr3.2:78191382-78191401 MS.gene057260:CDS 65.0%
GTCGGCGGCAGCGTCAATGA+TGG - chr3.2:78189093-78189112 None:intergenic 65.0%
TTGGTCGGTGGCTTCGTCGG+CGG - chr3.2:78189108-78189127 None:intergenic 65.0%
TTTGGCCCCCAACGCTGACG+CGG + chr3.2:78189795-78189814 MS.gene057260:intron 65.0%
!! TAGGGTGCCGCGTCAGCGTT+GGG - chr3.2:78189805-78189824 None:intergenic 65.0%
!! TTAGGGTGCCGCGTCAGCGT+TGG - chr3.2:78189806-78189825 None:intergenic 65.0%
!! AGGGTGCCGCGTCAGCGTTG+GGG - chr3.2:78189804-78189823 None:intergenic 70.0%
! GGGTGCCGCGTCAGCGTTGG+GGG - chr3.2:78189803-78189822 None:intergenic 75.0%


Chromosome Type Strat End Strand Name
chr3.2 gene 78189077 78191502 78189077 ID=MS.gene057260
chr3.2 mRNA 78189077 78191502 78189077 ID=MS.gene057260.t1;Parent=MS.gene057260
chr3.2 exon 78189077 78189178 78189077 ID=MS.gene057260.t1.exon1;Parent=MS.gene057260.t1
chr3.2 CDS 78189077 78189178 78189077 ID=cds.MS.gene057260.t1;Parent=MS.gene057260.t1
chr3.2 exon 78189256 78189343 78189256 ID=MS.gene057260.t1.exon2;Parent=MS.gene057260.t1
chr3.2 CDS 78189256 78189343 78189256 ID=cds.MS.gene057260.t1;Parent=MS.gene057260.t1
chr3.2 exon 78190753 78190871 78190753 ID=MS.gene057260.t1.exon3;Parent=MS.gene057260.t1
chr3.2 CDS 78190753 78190871 78190753 ID=cds.MS.gene057260.t1;Parent=MS.gene057260.t1
chr3.2 exon 78191155 78191502 78191155 ID=MS.gene057260.t1.exon4;Parent=MS.gene057260.t1
chr3.2 CDS 78191155 78191502 78191155 ID=cds.MS.gene057260.t1;Parent=MS.gene057260.t1
Gene Sequence

>MS.gene057260

ATGTCTCCAGGTCCCATCATTGACGCTGCCGCCGACGAAGCCACCGACCAACAACTTCCCTCCGTCGACGAAACAACGCTCAAGAACAAACCACTTCCCCAGGTTTTCCATTTTCCATCGGATTCCATATATTTATTCTCTATTTTGGTTTTCTGATCTGTTTTCTGTTTTTTCCTTAGGAAGAAGATGATGCTCCTATTGTCGAGGATGATAACGATAACGACAAAGACGAATCTGAGGACGAAGAAGACGACGAATCTCCTCAAGGTAGAATCTTATAGTATTATTTATTAACATCGTTTAATGGCATTCTAAAATATAATTACTGAACGTTTATGCTTGACAATGTTGTTGTTCCATTTGTACTATGCCTTGTTCTAGAGGGTACATGTAAAACTCAGGTTCTTGCAAGTAAAATCGGTGACGTACCTGTACCAGATATATACCTGATACCCGTATGTGTATCGTACTTGGGTTTCTATTGGAAGTGAAATTTGTGACTTTCTTTAATAAATTATTAATATAATAATAATAATAATAATAATAATATATGATATTAATTGTGCATTTGAGTTTCTTTCTTATTGTAACTAACCTTAGCTTTTACTTTTTAGGCTTAATTGCACTTTTGGCCCCCTATCTTTTCAAAACTTGCGGTTACAGCCCCCTAACTAATTTAAATACAAAACAGCCCCCTAAGTATTGAATCTTTGGCAGTTTTGGCCCCCAACGCTGACGCGGCACCCTAAATGAGGTGCACGTGTCATTTTTTTTAATTTTTTTTTTTGGCCTTGGGGGGCCAAAACTGCCAAAGATTCAATACTTAGGGGGCTGTTTTGTATTTAAATTAGTTAGGGGGCTGTAACCGCAAGTTTTGGAAAGATAGGGGGCCAAAAGTGCAATTAAGCCTACTTTTTAAAACTCTTTGATAGTTTTGTTGTGAATTTAACTATTACTATAATAAAAAACTTGTTTTTACCTTTATTTTTTTAGAATTCTTGTTCTGGGTATCATACCCGTACCTATGCAACATAGATTATAGTTGAACATATTATTTTTATAGATAGAAAACGTGTCCCGTTGTTCGACACGTGTCAATGCCCGACACTGAAACAAAACCGATACATGTAATTGCATTGTCATTTTCTCAAAAATTTATGGGTCGTGTCTTTGCCCGTGCTTCATAGGTTATCTTTGTCAGCTAATGCTTGTGTGCTTGCCATTCTTATCTATGAAGCACTGAAACACACAGAAACTTGATACGACGTTAATTCTTTAACTCCCAACAATAATTTGAGAAAATAGAATAATTATGTCTGTGTCATGTTGCTGTCGGACATTGGCACGGACTTGTTAGACACTAAACACGCCTTCATTTTTAATTTGATTCAATGTTTCTTCTTACTATTCTCACATCATTATAAAGGTAGATGAATATAGATATTTTCTTTCAATGATATAAAACAAAGTTCACTGCAAAGTGCAATGCTAATTTTGGCAAAATCAGAAAGTGTCACAAATTTCAGGGTCATAGTTATGACCTATAGGGCTTTTTGACCTAGATAAATCACAATGTGCATTTCCTTTTTCTTATGTATCTTCAATTGCAATTACCATATACATGTGTGCCCTCTGATGTTATCTGTTGATTTATTTTTTTGGACTTCGAGATGTAGGTGGTACTGAAGGTTCAAAGCAAAGCAGAAGTGAGAAGAAGAGTCGAAAAGCAATGTTGAAGCTGGGACTAAAACCCATTGATGGTGTTACTAGGGTAACAATCAAGAGAACAAAAAATGTGAGTTGTTATCACTGTTGTCAAATAGACGTAGAGGAATTTAGACTAATGGTTATTGTTGTTCTGCAATGCGCTATTAAGTCCAAAGTGCTATCAAATGGCGTCTATTGCTGCTATTGTCATGTAGCACAATGGAACTTGAACAAACCACTATCTTTCGCGATTCGTGATCGACAAGGCTAGTTATTGTTTACACAGACACACACTCACACACACACACGTTCTTTCTGTGATCTATGGTGGATGAGGAGGCATCTAACTGAATTACTTTATACCTTGTTAGGTTATGTTTTTCATCTCGAAACCTGATGTCTTCAAGAGTCCAAATTCAGAGACCTACGTTATATTTGGGGAGGCAAAAATAGAGGACCTGAGCTCTCAGTTGCAGACACAAGCTGCTCAACAGTTCAGGATGCCAGATATGGGATCTATAATGGCAAAACAAGAACAAGGTGCTGCAGCTGATGGAGCACAGCCTGAAGAGGAAGAGGAGGTTGATGAAACTGGCGTGGAGGCCCACGACATTGAGCTGGTAATGACACAAGCTGGGGTGTCAAAAGCCAAGGCTGTCAAGGCTCTCAAAACTCACAATGGGGACATTGTTGGTGCCATCATGGAACTAACTAATTAA

Protein sequence

>MS.gene057260.t1

MSPGPIIDAAADEATDQQLPSVDETTLKNKPLPQEEDDAPIVEDDNDNDKDESEDEEDDESPQGGTEGSKQSRSEKKSRKAMLKLGLKPIDGVTRVTIKRTKNVMFFISKPDVFKSPNSETYVIFGEAKIEDLSSQLQTQAAQQFRMPDMGSIMAKQEQGAAADGAQPEEEEEVDETGVEAHDIELVMTQAGVSKAKAVKALKTHNGDIVGAIMELTN