AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene74696

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene74696.t1 MTR_6g033850 94.249 313 18 0 1 313 320 632 0.0 600
MS.gene74696.t1 MTR_6g033800 90.415 313 28 1 1 313 231 541 0.0 577
MS.gene74696.t1 MTR_6g033760 75.254 295 73 0 1 295 320 614 6.24e-156 451
MS.gene74696.t1 MTR_6g033870 67.405 316 98 1 1 311 322 637 3.81e-145 425
MS.gene74696.t1 MTR_6g033955 66.139 316 102 1 1 311 320 635 2.02e-140 412
MS.gene74696.t1 MTR_6g033820 64.557 316 107 1 1 311 320 635 1.10e-134 398
MS.gene74696.t1 MTR_7g024390 61.149 296 114 1 1 295 320 615 3.96e-122 365
MS.gene74696.t1 MTR_7g024580 60.473 296 116 1 1 295 320 615 1.48e-120 361
MS.gene74696.t1 MTR_4g063710 60.135 296 117 1 1 295 320 615 4.26e-120 360
MS.gene74696.t1 MTR_7g099680 60.135 296 117 1 1 295 320 615 6.49e-120 359
MS.gene74696.t1 MTR_4g063720 59.122 296 120 1 1 295 249 544 6.43e-119 355
MS.gene74696.t1 MTR_4g063720 59.122 296 120 1 1 295 320 615 4.00e-118 355
MS.gene74696.t1 MTR_4g130540 59.459 296 119 1 1 295 319 614 4.53e-117 352
MS.gene74696.t1 MTR_6g034005 61.199 317 103 5 1 306 240 547 6.40e-114 346
MS.gene74696.t1 MTR_8g099795 51.471 272 130 2 1 270 346 617 2.57e-89 281
MS.gene74696.t1 MTR_8g099945 51.103 272 131 2 1 270 346 617 2.12e-88 278
MS.gene74696.t1 MTR_6g033855 89.655 145 13 1 1 145 160 302 7.67e-86 261
MS.gene74696.t1 MTR_5g066800 46.644 298 156 3 1 297 333 628 3.22e-81 259
MS.gene74696.t1 MTR_7g451380 49.077 271 136 2 1 270 322 591 2.76e-80 256
MS.gene74696.t1 MTR_7g026030 50.000 260 128 2 1 260 322 579 6.57e-80 255
MS.gene74696.t1 MTR_7g011590 48.881 268 135 2 1 268 310 575 1.18e-79 254
MS.gene74696.t1 MTR_7g021440 46.465 297 156 3 1 296 322 616 5.64e-78 250
MS.gene74696.t1 MTR_2g032550 49.442 269 134 2 1 268 323 590 1.40e-77 249
MS.gene74696.t1 MTR_2g022050 47.157 299 155 3 1 297 322 619 7.26e-77 247
MS.gene74696.t1 MTR_7g025720 48.462 260 132 2 1 260 322 579 2.56e-76 246
MS.gene74696.t1 MTR_7g025630 47.692 260 134 2 1 260 308 565 3.47e-76 245
MS.gene74696.t1 MTR_7g025770 48.339 271 137 3 1 270 322 590 5.85e-76 245
MS.gene74696.t1 MTR_7g025820 48.462 260 133 1 1 260 322 580 8.81e-76 244
MS.gene74696.t1 MTR_2g038270 44.667 300 161 5 1 297 330 627 1.05e-75 244
MS.gene74696.t1 MTR_1g017130 44.554 303 164 4 1 302 284 583 3.68e-75 242
MS.gene74696.t1 MTR_7g025260 45.424 295 160 1 1 295 294 587 2.76e-74 240
MS.gene74696.t1 MTR_2g038260 48.161 299 147 8 1 295 322 616 6.15e-74 239
MS.gene74696.t1 MTR_2g017730 44.211 285 140 3 1 280 321 591 6.18e-74 239
MS.gene74696.t1 MTR_4g079590 46.125 271 143 3 1 270 322 590 6.70e-74 239
MS.gene74696.t1 MTR_8g103930 44.746 295 162 1 1 295 319 612 7.07e-74 239
MS.gene74696.t1 MTR_7g026110 44.027 293 162 2 1 293 321 611 1.11e-73 239
MS.gene74696.t1 MTR_7g078210 49.042 261 130 3 1 260 322 580 2.22e-73 238
MS.gene74696.t1 MTR_8g032650 45.215 303 163 3 1 303 322 621 3.08e-73 238
MS.gene74696.t1 MTR_7g078190 47.893 261 133 3 1 260 323 581 5.98e-73 237
MS.gene74696.t1 MTR_7g025760 43.624 298 161 3 1 295 322 615 2.03e-72 236
MS.gene74696.t1 MTR_7g024030 48.077 260 133 2 1 260 322 579 5.66e-72 234
MS.gene74696.t1 MTR_7g074460 46.284 296 156 3 1 295 304 597 1.48e-71 233
MS.gene74696.t1 MTR_7g025790 43.390 295 165 2 1 295 322 614 2.55e-70 230
MS.gene74696.t1 MTR_7g025620 45.896 268 143 2 1 268 322 587 2.61e-69 227
MS.gene74696.t1 MTR_4g027145 46.863 271 141 3 1 270 334 602 2.69e-69 228
MS.gene74696.t1 MTR_7g026090 48.249 257 130 1 1 257 322 575 1.39e-67 223
MS.gene74696.t1 MTR_7g029415 46.468 269 140 4 1 268 329 594 2.11e-67 223
MS.gene74696.t1 MTR_7g026170 46.494 271 142 3 1 270 322 590 1.47e-66 220
MS.gene74696.t1 MTR_1g041565 44.403 268 130 3 1 268 265 513 3.65e-65 215
MS.gene74696.t1 MTR_7g451360 46.360 261 109 3 1 260 292 522 3.66e-65 215
MS.gene74696.t1 MTR_1g077240 46.840 269 133 4 1 268 1 260 9.26e-65 206
MS.gene74696.t1 MTR_7g026050 42.804 271 126 3 1 270 78 320 9.35e-65 208
MS.gene74696.t1 MTR_2g437440 45.387 271 128 3 1 270 322 573 1.71e-64 214
MS.gene74696.t1 MTR_2g032580 43.333 300 134 6 1 297 322 588 1.54e-63 211
MS.gene74696.t1 MTR_7g026140 44.118 272 147 5 1 270 306 574 8.89e-62 207
MS.gene74696.t1 MTR_7g025740 40.264 303 164 6 1 291 322 619 2.55e-61 207
MS.gene74696.t1 MTR_7g026130 45.421 273 143 4 1 270 322 591 1.64e-59 203
MS.gene74696.t1 MTR_6g033810 91.667 96 8 0 1 96 196 291 4.55e-54 179
MS.gene74696.t1 MTR_2g010020 41.597 238 132 4 5 241 366 597 7.12e-53 184
MS.gene74696.t1 MTR_2g010020 41.597 238 132 4 5 241 367 598 7.43e-53 184
MS.gene74696.t1 MTR_2g005690 40.157 254 143 5 4 256 382 627 1.12e-51 182
MS.gene74696.t1 MTR_7g035155 45.161 217 117 2 54 270 322 536 1.25e-50 177
MS.gene74696.t1 MTR_4g092920 40.678 236 133 4 7 241 232 461 2.13e-50 176
MS.gene74696.t1 MTR_4g092920 45.024 211 109 4 7 216 366 570 1.05e-49 176
MS.gene74696.t1 MTR_7g007000 39.350 277 138 5 2 276 305 553 1.26e-48 172
MS.gene74696.t1 MTR_5g005870 38.060 268 151 7 1 264 92 348 3.43e-46 162
MS.gene74696.t1 MTR_7g074540 39.000 200 120 2 97 295 1 199 8.95e-38 134
MS.gene74696.t1 MTR_7g451390 42.614 176 98 3 122 295 15 189 5.58e-36 129
MS.gene74696.t1 MTR_1g116250 36.626 243 111 7 27 268 60 260 6.46e-33 124
MS.gene74696.t1 MTR_2g040355 35.249 261 93 7 36 295 85 270 4.16e-31 119
MS.gene74696.t1 MTR_6g033815 61.957 92 34 1 204 294 1 92 6.81e-28 105
MS.gene74696.t1 MTR_4g088515 54.369 103 46 1 15 117 518 619 1.52e-27 113
MS.gene74696.t1 MTR_1g068900 40.940 149 85 2 107 253 23 170 8.16e-27 104
MS.gene74696.t1 MTR_2g040160 65.000 80 28 0 1 80 1418 1497 2.70e-26 110
MS.gene74696.t1 MTR_2g040260 61.250 80 31 0 1 80 1347 1426 8.27e-25 105
MS.gene74696.t1 MTR_4g107920 35.204 196 116 6 6 196 336 525 1.84e-23 101
MS.gene74696.t1 MTR_2g040220 44.118 136 49 3 127 254 1397 1513 4.32e-23 100
MS.gene74696.t1 MTR_2g040220 61.644 73 25 1 1 70 1331 1403 8.72e-20 90.9
MS.gene74696.t1 MTR_2g040350 60.000 80 32 0 1 80 1133 1212 1.13e-22 99.8
MS.gene74696.t1 MTR_2g040350 60.000 80 32 0 1 80 1351 1430 1.20e-22 99.4
MS.gene74696.t1 MTR_2g040370 65.714 70 24 0 1 70 1338 1407 3.43e-21 95.1
MS.gene74696.t1 MTR_2g040370 68.116 69 22 0 1 69 1723 1791 1.08e-15 78.6
MS.gene74696.t1 MTR_2g040370 65.714 70 24 0 1 70 1338 1407 3.44e-21 95.1
MS.gene74696.t1 MTR_2g040370 67.647 68 22 0 1 68 1723 1790 7.14e-15 76.3
MS.gene74696.t1 MTR_4g115780 38.674 181 102 4 2 174 462 641 1.04e-20 93.6
MS.gene74696.t1 MTR_7g026180 32.105 190 98 4 82 270 144 303 1.48e-20 91.3
MS.gene74696.t1 MTR_5g006180 33.908 174 97 5 6 176 351 509 6.03e-20 90.9
MS.gene74696.t1 MTR_2g017710 46.087 115 38 2 47 160 102 193 1.48e-19 87.4
MS.gene74696.t1 MTR_4g115860 41.489 94 54 1 77 169 29 122 3.49e-15 71.6
MS.gene74696.t1 MTR_5g090110 31.818 176 100 6 6 170 334 500 9.46e-15 75.5
MS.gene74696.t1 MTR_2g031670 62.069 58 21 1 32 89 284 340 3.62e-13 69.7
MS.gene74696.t1 MTR_2g032160 57.407 54 23 0 1 54 322 375 4.52e-13 70.1
MS.gene74696.t1 MTR_7g026095 38.889 90 55 0 164 253 258 347 3.42e-12 67.0
MS.gene74696.t1 MTR_2g040375 48.333 60 31 0 79 138 51 110 5.29e-12 62.4
MS.gene74696.t1 MTR_6g478100 48.485 66 34 0 195 260 208 273 5.29e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene74696.t1 AT3G12580 60.135 296 117 1 1 295 320 615 4.35e-120 360
MS.gene74696.t1 AT5G02500 59.459 296 119 1 1 295 320 615 2.37e-118 355
MS.gene74696.t1 AT1G16030 58.446 296 122 1 1 295 319 614 7.53e-118 354
MS.gene74696.t1 AT5G02490 58.446 296 122 1 1 295 320 615 7.81e-116 349
MS.gene74696.t1 AT3G09440 58.784 296 121 1 1 295 320 615 4.38e-115 347
MS.gene74696.t1 AT3G09440 58.784 296 121 1 1 295 320 615 4.38e-115 347
MS.gene74696.t1 AT3G09440 58.784 296 121 1 1 295 320 615 4.38e-115 347
MS.gene74696.t1 AT3G09440 58.784 296 121 1 1 295 320 615 4.38e-115 347
MS.gene74696.t1 AT1G56410 57.432 296 123 2 1 295 320 613 8.40e-111 335
MS.gene74696.t1 AT5G28540 48.986 296 149 2 1 294 345 640 2.01e-92 289
MS.gene74696.t1 AT5G42020 48.311 296 151 2 1 294 345 640 1.62e-91 286
MS.gene74696.t1 AT5G42020 48.311 296 151 2 1 294 350 645 2.79e-91 286
MS.gene74696.t1 AT1G09080 49.492 295 147 2 1 293 349 643 1.92e-81 260
MS.gene74696.t1 AT1G09080 49.492 295 147 2 1 293 359 653 2.86e-81 260
MS.gene74696.t1 AT5G42020 47.391 230 105 4 1 221 345 567 9.59e-57 194
MS.gene74696.t1 AT5G09590 40.254 236 134 4 7 241 372 601 7.50e-52 182
MS.gene74696.t1 AT5G49910 40.157 254 143 5 4 256 391 636 2.31e-51 181
MS.gene74696.t1 AT4G24280 38.976 254 146 5 4 256 391 636 9.03e-51 179
MS.gene74696.t1 AT4G37910 46.330 218 108 5 5 219 365 576 2.10e-47 170
MS.gene74696.t1 AT4G37910 46.330 218 108 5 5 219 365 576 2.10e-47 170
MS.gene74696.t1 AT5G02500 70.667 75 22 0 1 75 320 394 4.53e-27 111
MS.gene74696.t1 AT5G02500 46.000 100 54 0 196 295 386 485 2.33e-19 89.4
MS.gene74696.t1 AT2G32120 35.227 176 108 3 3 174 338 511 1.41e-26 110
MS.gene74696.t1 AT2G32120 35.227 176 108 3 3 174 338 511 1.41e-26 110

Find 80 sgRNAs with CRISPR-Local

Find 86 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACTAATATCCTTATCATTTA+TGG 0.075594 6.3:+23886049 None:intergenic
GTCTTCATCTTTGTACTTCT+CGG 0.223817 6.3:+23886139 None:intergenic
GGTAAATACATGTTCCATTT+TGG 0.236461 6.3:+23886436 None:intergenic
AGATGCCATCATCATCTATT+TGG 0.264610 6.3:+23886270 None:intergenic
ATTCCTTGGAGTTAATAATA+AGG 0.284638 6.3:-23886225 MS.gene74696:CDS
GAAAAGTGTATAATTGATAG+TGG 0.341783 6.3:-23886749 MS.gene74696:CDS
CATTCCTTTGTCCCTTGGAT+TGG 0.344736 6.3:-23886513 MS.gene74696:CDS
CCCTTGGATTGGAGACTCAT+GGG 0.355352 6.3:-23886502 MS.gene74696:CDS
GATCAATAAAGCAATTGATT+TGG 0.363925 6.3:-23885997 MS.gene74696:CDS
CATGAATTAAAATATTCATT+TGG 0.379798 6.3:+23886399 None:intergenic
TCCTTGTTGGTGGCTCTACT+AGG 0.385553 6.3:-23886697 MS.gene74696:CDS
TCCCTTGGATTGGAGACTCA+TGG 0.395103 6.3:-23886503 MS.gene74696:CDS
GAGGTCATTCCTTTGTCCCT+TGG 0.400469 6.3:-23886518 MS.gene74696:CDS
AAATGGTGAGTGATTTCTTC+GGG 0.406066 6.3:-23886658 MS.gene74696:CDS
TGGTGTGCAAGAGGGTATTA+TGG 0.408701 6.3:-23885856 MS.gene74696:CDS
ATTCATGATGTTGTCCTTGT+TGG 0.423329 6.3:-23886710 MS.gene74696:CDS
GATGCTTTCGTCAAAAGAAA+AGG 0.432159 6.3:-23886024 MS.gene74696:CDS
CATGATGTTGTCCTTGTTGG+TGG 0.440319 6.3:-23886707 MS.gene74696:CDS
GCTGCAACAGCTAATATCAC+TGG 0.440452 6.3:-23885756 MS.gene74696:CDS
TGAGGAACACCTGCCGGAGC+AGG 0.452355 6.3:+23886308 None:intergenic
GAGGAATGCCATAAATGATA+AGG 0.458236 6.3:-23886057 MS.gene74696:CDS
GGTTCAAGATTTACTATTGA+CGG 0.462746 6.3:-23886540 MS.gene74696:CDS
TGCAAGAGGGTATTATGGTT+GGG 0.463403 6.3:-23885851 MS.gene74696:CDS
TTCATGTTTATGAAGGTGAA+AGG 0.490881 6.3:-23886382 MS.gene74696:CDS
CTTGCTAGGAAAATTTGTGT+TGG 0.494570 6.3:-23886339 MS.gene74696:CDS
CAAATGGTGAGTGATTTCTT+CGG 0.498259 6.3:-23886659 MS.gene74696:CDS
GTTGGAAATTCCTCCTGCTC+CGG 0.499879 6.3:-23886321 MS.gene74696:CDS
TGTACCATGGAGAAATTCCT+TGG 0.501093 6.3:-23886239 MS.gene74696:CDS
AGACAAGAGGTATATGAAGA+AGG 0.504212 6.3:-23886120 MS.gene74696:CDS
GAAATTCCTCCTGCTCCGGC+AGG 0.504320 6.3:-23886317 MS.gene74696:CDS
TGGAAGCGGATTCTGATTTG+AGG 0.508402 6.3:+23886290 None:intergenic
GTGCAAGAGGGTATTATGGT+TGG 0.512787 6.3:-23885852 MS.gene74696:CDS
GAGTGGTGAGTTTAGTGAGA+AGG 0.517127 6.3:-23886561 MS.gene74696:CDS
CTGATTTGAGGAACACCTGC+CGG 0.517519 6.3:+23886302 None:intergenic
CATCGATGCCGATGAGGCAG+TGG 0.527688 6.3:-23886615 MS.gene74696:CDS
TAACCTTATTATTAACTCCA+AGG 0.528008 6.3:+23886222 None:intergenic
CCCCATGAGTCTCCAATCCA+AGG 0.533157 6.3:+23886501 None:intergenic
GATTGTAAAAGTGCAACAAA+TGG 0.537492 6.3:-23886675 MS.gene74696:CDS
ACCATGTGCCACTGCCTCAT+CGG 0.540710 6.3:+23886607 None:intergenic
CCTTGGATTGGAGACTCATG+GGG 0.543035 6.3:-23886501 MS.gene74696:CDS
CATCATCATCTATTTGGAAG+CGG 0.556075 6.3:+23886276 None:intergenic
ACTAGGGACAACAACTTGCT+AGG 0.557676 6.3:-23886353 MS.gene74696:CDS
CTGCAACAGCTAATATCACT+GGG 0.557832 6.3:-23885755 MS.gene74696:CDS
AAGGTGAAAGGAAAATAACT+AGG 0.558812 6.3:-23886370 MS.gene74696:CDS
CGCTTCCAAATAGATGATGA+TGG 0.564410 6.3:-23886275 MS.gene74696:CDS
CAATTGATTTGGTCTTAATG+TGG 0.566117 6.3:-23885986 MS.gene74696:CDS
GTTAAAATAATAAGTGACAA+GGG 0.575563 6.3:-23886203 MS.gene74696:CDS
GCCGATGAGGCAGTGGCACA+TGG 0.579560 6.3:-23886608 MS.gene74696:CDS
TTATGAACATAATAATCCCT+AGG 0.581397 6.3:-23886475 MS.gene74696:CDS
CTTGGATTGGAGACTCATGG+GGG 0.582526 6.3:-23886500 MS.gene74696:CDS
AAAAGTGTATAATTGATAGT+GGG 0.583108 6.3:-23886748 MS.gene74696:CDS
ATGGTGAGTGATTTCTTCGG+GGG 0.584820 6.3:-23886656 MS.gene74696:CDS
AACTCCAAGGAATTTCTCCA+TGG 0.593847 6.3:+23886235 None:intergenic
TGTCAAAGGAGGAAATTGAG+AGG 0.594179 6.3:-23886175 MS.gene74696:CDS
GCTCGATGTTAACGTGGTTG+CGG 0.598172 6.3:-23885964 MS.gene74696:CDS
GTGTATAATTGATAGTGGGA+TGG 0.602853 6.3:-23886744 MS.gene74696:CDS
GGAACACCTGCCGGAGCAGG+AGG 0.603231 6.3:+23886311 None:intergenic
TTGGATTGGAGACTCATGGG+GGG 0.604717 6.3:-23886499 MS.gene74696:CDS
GGTTAAAATAATAAGTGACA+AGG 0.605492 6.3:-23886204 MS.gene74696:CDS
TGAAGAAGATAAATGATGAG+AGG 0.606461 6.3:-23885881 MS.gene74696:CDS
AGTACAAAGATGAAGACAAG+AGG 0.607431 6.3:-23886133 MS.gene74696:CDS
GTCTCCAATCCAAGGGACAA+AGG 0.608351 6.3:+23886509 None:intergenic
AAGATAAATGATGAGAGGCA+TGG 0.610460 6.3:-23885876 MS.gene74696:CDS
CCCATGAGTCTCCAATCCAA+GGG 0.618857 6.3:+23886502 None:intergenic
AGAAGTATGCATACAACATG+AGG 0.619888 6.3:-23886076 MS.gene74696:CDS
TGACAAGGGAAGATTGTCAA+AGG 0.621527 6.3:-23886189 MS.gene74696:CDS
AGGTGAAAGGAAAATAACTA+GGG 0.628225 6.3:-23886369 MS.gene74696:CDS
TCAAGATTTACTATTGACGG+AGG 0.649572 6.3:-23886537 MS.gene74696:CDS
CATTTGGTTGTGCAAATGTG+TGG 0.653455 6.3:+23886415 None:intergenic
TCCTAGTAGAGCCACCAACA+AGG 0.658255 6.3:+23886696 None:intergenic
CATCTTACACATCTGTACCA+TGG 0.658791 6.3:-23886252 MS.gene74696:CDS
TGAGAGGCATGGTGTGCAAG+AGG 0.663839 6.3:-23885865 MS.gene74696:CDS
CAAAAGCATCGATGCCGATG+AGG 0.665778 6.3:-23886621 MS.gene74696:CDS
CAAGGGAAGATTGTCAAAGG+AGG 0.670823 6.3:-23886186 MS.gene74696:CDS
TGGTGAGTGATTTCTTCGGG+GGG 0.673380 6.3:-23886655 MS.gene74696:CDS
GTTCATGCTTCGATATTGAG+TGG 0.676419 6.3:-23886578 MS.gene74696:CDS
AATGGTGAGTGATTTCTTCG+GGG 0.681221 6.3:-23886657 MS.gene74696:CDS
GAGAGGCATGGTGTGCAAGA+GGG 0.687052 6.3:-23885864 MS.gene74696:CDS
AAAGTCAACAATGAGCTGAG+AGG 0.698492 6.3:+23885728 None:intergenic
AATGTGGCTCGATGTTAACG+TGG 0.725072 6.3:-23885970 MS.gene74696:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAGAATAAAAAAAATCAT+TGG - chr6.3:23886664-23886683 MS.gene74696:CDS 10.0%
!! CATGAATTAAAATATTCATT+TGG + chr6.3:23886089-23886108 None:intergenic 15.0%
!!! ATTTTAATTCATGTTTATGA+AGG - chr6.3:23886096-23886115 MS.gene74696:CDS 15.0%
!! ACTAATATCCTTATCATTTA+TGG + chr6.3:23886439-23886458 None:intergenic 20.0%
!! GTTAAAATAATAAGTGACAA+GGG - chr6.3:23886282-23886301 MS.gene74696:CDS 20.0%
!!! AAAAGTGTATAATTGATAGT+GGG - chr6.3:23885737-23885756 MS.gene74696:CDS 20.0%
! ATTCCTTGGAGTTAATAATA+AGG - chr6.3:23886260-23886279 MS.gene74696:CDS 25.0%
! GATCAATAAAGCAATTGATT+TGG - chr6.3:23886488-23886507 MS.gene74696:CDS 25.0%
! GGTTAAAATAATAAGTGACA+AGG - chr6.3:23886281-23886300 MS.gene74696:CDS 25.0%
! TAACCTTATTATTAACTCCA+AGG + chr6.3:23886266-23886285 None:intergenic 25.0%
! TTATGAACATAATAATCCCT+AGG - chr6.3:23886010-23886029 MS.gene74696:CDS 25.0%
!! GAAAAGTGTATAATTGATAG+TGG - chr6.3:23885736-23885755 MS.gene74696:CDS 25.0%
AAGGTGAAAGGAAAATAACT+AGG - chr6.3:23886115-23886134 MS.gene74696:CDS 30.0%
AGGTGAAAGGAAAATAACTA+GGG - chr6.3:23886116-23886135 MS.gene74696:CDS 30.0%
GGTTCAAGATTTACTATTGA+CGG - chr6.3:23885945-23885964 MS.gene74696:CDS 30.0%
TACAAAAATTCCTGCCAAAA+TGG - chr6.3:23886035-23886054 MS.gene74696:CDS 30.0%
TGAAGAAGATAAATGATGAG+AGG - chr6.3:23886604-23886623 MS.gene74696:CDS 30.0%
TTCATGTTTATGAAGGTGAA+AGG - chr6.3:23886103-23886122 MS.gene74696:CDS 30.0%
! CAGGAATTTTTGTATTCCTA+GGG + chr6.3:23886029-23886048 None:intergenic 30.0%
! GATTGTAAAAGTGCAACAAA+TGG - chr6.3:23885810-23885829 MS.gene74696:intron 30.0%
! GGTAAATACATGTTCCATTT+TGG + chr6.3:23886052-23886071 None:intergenic 30.0%
!! CAATTGATTTGGTCTTAATG+TGG - chr6.3:23886499-23886518 MS.gene74696:CDS 30.0%
AAATGGTGAGTGATTTCTTC+GGG - chr6.3:23885827-23885846 MS.gene74696:intron 35.0%
AAGATAAATGATGAGAGGCA+TGG - chr6.3:23886609-23886628 MS.gene74696:CDS 35.0%
AGATGCCATCATCATCTATT+TGG + chr6.3:23886218-23886237 None:intergenic 35.0%
AGTACAAAGATGAAGACAAG+AGG - chr6.3:23886352-23886371 MS.gene74696:CDS 35.0%
ATTCATGATGTTGTCCTTGT+TGG - chr6.3:23885775-23885794 MS.gene74696:intron 35.0%
CAAATGGTGAGTGATTTCTT+CGG - chr6.3:23885826-23885845 MS.gene74696:intron 35.0%
CATCATCATCTATTTGGAAG+CGG + chr6.3:23886212-23886231 None:intergenic 35.0%
CTTGCTAGGAAAATTTGTGT+TGG - chr6.3:23886146-23886165 MS.gene74696:CDS 35.0%
GAGGAATGCCATAAATGATA+AGG - chr6.3:23886428-23886447 MS.gene74696:CDS 35.0%
GATGCTTTCGTCAAAAGAAA+AGG - chr6.3:23886461-23886480 MS.gene74696:CDS 35.0%
GTCTTCATCTTTGTACTTCT+CGG + chr6.3:23886349-23886368 None:intergenic 35.0%
TCAAGATTTACTATTGACGG+AGG - chr6.3:23885948-23885967 MS.gene74696:CDS 35.0%
! AGAAGTATGCATACAACATG+AGG - chr6.3:23886409-23886428 MS.gene74696:CDS 35.0%
! AGACAAGAGGTATATGAAGA+AGG - chr6.3:23886365-23886384 MS.gene74696:CDS 35.0%
! GCAGGAATTTTTGTATTCCT+AGG + chr6.3:23886030-23886049 None:intergenic 35.0%
!! AATACATGTTCCATTTTGGC+AGG + chr6.3:23886048-23886067 None:intergenic 35.0%
!! GTGTATAATTGATAGTGGGA+TGG - chr6.3:23885741-23885760 MS.gene74696:CDS 35.0%
AAAGTCAACAATGAGCTGAG+AGG + chr6.3:23886760-23886779 None:intergenic 40.0%
AACTCCAAGGAATTTCTCCA+TGG + chr6.3:23886253-23886272 None:intergenic 40.0%
AATGGTGAGTGATTTCTTCG+GGG - chr6.3:23885828-23885847 MS.gene74696:intron 40.0%
CATCTTACACATCTGTACCA+TGG - chr6.3:23886233-23886252 MS.gene74696:CDS 40.0%
CATTTGGTTGTGCAAATGTG+TGG + chr6.3:23886073-23886092 None:intergenic 40.0%
CGCTTCCAAATAGATGATGA+TGG - chr6.3:23886210-23886229 MS.gene74696:CDS 40.0%
CTGCAACAGCTAATATCACT+GGG - chr6.3:23886730-23886749 MS.gene74696:CDS 40.0%
GTTCATGCTTCGATATTGAG+TGG - chr6.3:23885907-23885926 MS.gene74696:CDS 40.0%
TGACAAGGGAAGATTGTCAA+AGG - chr6.3:23886296-23886315 MS.gene74696:CDS 40.0%
TGTACCATGGAGAAATTCCT+TGG - chr6.3:23886246-23886265 MS.gene74696:CDS 40.0%
TGTCAAAGGAGGAAATTGAG+AGG - chr6.3:23886310-23886329 MS.gene74696:CDS 40.0%
!! TGCAAGAGGGTATTATGGTT+GGG - chr6.3:23886634-23886653 MS.gene74696:CDS 40.0%
AATGTGGCTCGATGTTAACG+TGG - chr6.3:23886515-23886534 MS.gene74696:CDS 45.0%
ATGGTGAGTGATTTCTTCGG+GGG - chr6.3:23885829-23885848 MS.gene74696:intron 45.0%
CAAGGGAAGATTGTCAAAGG+AGG - chr6.3:23886299-23886318 MS.gene74696:CDS 45.0%
CATGATGTTGTCCTTGTTGG+TGG - chr6.3:23885778-23885797 MS.gene74696:intron 45.0%
CATTCCTTTGTCCCTTGGAT+TGG - chr6.3:23885972-23885991 MS.gene74696:CDS 45.0%
GAGTGGTGAGTTTAGTGAGA+AGG - chr6.3:23885924-23885943 MS.gene74696:CDS 45.0%
GCTGCAACAGCTAATATCAC+TGG - chr6.3:23886729-23886748 MS.gene74696:CDS 45.0%
! ACTAGGGACAACAACTTGCT+AGG - chr6.3:23886132-23886151 MS.gene74696:CDS 45.0%
! TGGAAGCGGATTCTGATTTG+AGG + chr6.3:23886198-23886217 None:intergenic 45.0%
!! GTGCAAGAGGGTATTATGGT+TGG - chr6.3:23886633-23886652 MS.gene74696:CDS 45.0%
!! TGGTGTGCAAGAGGGTATTA+TGG - chr6.3:23886629-23886648 MS.gene74696:CDS 45.0%
CCCATGAGTCTCCAATCCAA+GGG + chr6.3:23885986-23886005 None:intergenic 50.0%
GAGGTCATTCCTTTGTCCCT+TGG - chr6.3:23885967-23885986 MS.gene74696:CDS 50.0%
GCTCGATGTTAACGTGGTTG+CGG - chr6.3:23886521-23886540 MS.gene74696:CDS 50.0%
GTCTCCAATCCAAGGGACAA+AGG + chr6.3:23885979-23885998 None:intergenic 50.0%
GTTGGAAATTCCTCCTGCTC+CGG - chr6.3:23886164-23886183 MS.gene74696:CDS 50.0%
TCCTAGTAGAGCCACCAACA+AGG + chr6.3:23885792-23885811 None:intergenic 50.0%
TGGTGAGTGATTTCTTCGGG+GGG - chr6.3:23885830-23885849 MS.gene74696:intron 50.0%
! CCCTTGGATTGGAGACTCAT+GGG - chr6.3:23885983-23886002 MS.gene74696:CDS 50.0%
! CCTTGGATTGGAGACTCATG+GGG - chr6.3:23885984-23886003 MS.gene74696:CDS 50.0%
! CTGATTTGAGGAACACCTGC+CGG + chr6.3:23886186-23886205 None:intergenic 50.0%
! CTTGGATTGGAGACTCATGG+GGG - chr6.3:23885985-23886004 MS.gene74696:CDS 50.0%
! TCCCTTGGATTGGAGACTCA+TGG - chr6.3:23885982-23886001 MS.gene74696:CDS 50.0%
! TTGGATTGGAGACTCATGGG+GGG - chr6.3:23885986-23886005 MS.gene74696:CDS 50.0%
!! CAAAAGCATCGATGCCGATG+AGG - chr6.3:23885864-23885883 MS.gene74696:CDS 50.0%
!! TCCTTGTTGGTGGCTCTACT+AGG - chr6.3:23885788-23885807 MS.gene74696:intron 50.0%
CCCCATGAGTCTCCAATCCA+AGG + chr6.3:23885987-23886006 None:intergenic 55.0%
! ACCATGTGCCACTGCCTCAT+CGG + chr6.3:23885881-23885900 None:intergenic 55.0%
! GAGAGGCATGGTGTGCAAGA+GGG - chr6.3:23886621-23886640 MS.gene74696:CDS 55.0%
! TGAGAGGCATGGTGTGCAAG+AGG - chr6.3:23886620-23886639 MS.gene74696:CDS 55.0%
CATCGATGCCGATGAGGCAG+TGG - chr6.3:23885870-23885889 MS.gene74696:CDS 60.0%
GAAATTCCTCCTGCTCCGGC+AGG - chr6.3:23886168-23886187 MS.gene74696:CDS 60.0%
GCCGATGAGGCAGTGGCACA+TGG - chr6.3:23885877-23885896 MS.gene74696:CDS 65.0%
TGAGGAACACCTGCCGGAGC+AGG + chr6.3:23886180-23886199 None:intergenic 65.0%
GGAACACCTGCCGGAGCAGG+AGG + chr6.3:23886177-23886196 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr6.3 gene 23885724 23886783 23885724 ID=MS.gene74696
chr6.3 mRNA 23885724 23886783 23885724 ID=MS.gene74696.t1;Parent=MS.gene74696
chr6.3 exon 23885845 23886783 23885845 ID=MS.gene74696.t1.exon1;Parent=MS.gene74696.t1
chr6.3 CDS 23885845 23886783 23885845 ID=cds.MS.gene74696.t1;Parent=MS.gene74696.t1
chr6.3 exon 23885724 23885786 23885724 ID=MS.gene74696.t1.exon2;Parent=MS.gene74696.t1
chr6.3 CDS 23885724 23885786 23885724 ID=cds.MS.gene74696.t1;Parent=MS.gene74696.t1
Gene Sequence

>MS.gene74696

ATGGAGATTGTAGAAAAGTGTATAATTGATAGTGGGATGGACAAAAGTAACATTCATGATGTTGTCCTTGTTGGTGGCTCTACTAGGATTGTAAAAGTGCAACAAATGGTGAGTGATTTCTTCGGGGGGAAGCTTTTATGCAAAAGCATCGATGCCGATGAGGCAGTGGCACATGGTGCTGCTGTTCATGCTTCGATATTGAGTGGTGAGTTTAGTGAGAAGGTTCAAGATTTACTATTGACGGAGGTCATTCCTTTGTCCCTTGGATTGGAGACTCATGGGGGGATTATGAACATAATAATCCCTAGGAATACAAAAATTCCTGCCAAAATGGAACATGTATTTACCACACATTTGCACAACCAAATGAATATTTTAATTCATGTTTATGAAGGTGAAAGGAAAATAACTAGGGACAACAACTTGCTAGGAAAATTTGTGTTGGAAATTCCTCCTGCTCCGGCAGGTGTTCCTCAAATCAGAATCCGCTTCCAAATAGATGATGATGGCATCTTACACATCTGTACCATGGAGAAATTCCTTGGAGTTAATAATAAGGTTAAAATAATAAGTGACAAGGGAAGATTGTCAAAGGAGGAAATTGAGAGGATGATCAAAGAAGCCGAGAAGTACAAAGATGAAGACAAGAGGTATATGAAGAAGGTAGAAGCGAGAATTGTACTAGAGAAGTATGCATACAACATGAGGAATGCCATAAATGATAAGGATATTAGTTTGATGCTTTCGTCAAAAGAAAAGGAAAAGATCAATAAAGCAATTGATTTGGTCTTAATGTGGCTCGATGTTAACGTGGTTGCGGAACAACAAGACTTTGAGTATTATACGAGCATTCTTTCAAGTGTATTTGATGCAGTTATTGTGAAGAAGATAAATGATGAGAGGCATGGTGTGCAAGAGGGTATTATGGTTGGGAATGCAGTAAAGAATAAAAAAAATCATTGGTTACAAATTTTACTAAAATATTCTTTCATTATAGTGTATGCAGCTGCAACAGCTAATATCACTGGGCAAGCCTCTCAGCTCATTGTTGACTTTGTAA
Protein sequence

>MS.gene74696.t1

MEIVEKCIIDSGMDKSNIHDVVLVGGSTRIVKVQQMVSDFFGGKLLCKSIDADEAVAHGAAVHASILSGEFSEKVQDLLLTEVIPLSLGLETHGGIMNIIIPRNTKIPAKMEHVFTTHLHNQMNILIHVYEGERKITRDNNLLGKFVLEIPPAPAGVPQIRIRFQIDDDGILHICTMEKFLGVNNKVKIISDKGRLSKEEIERMIKEAEKYKDEDKRYMKKVEARIVLEKYAYNMRNAINDKDISLMLSSKEKEKINKAIDLVLMWLDVNVVAEQQDFEYYTSILSSVFDAVIVKKINDERHGVQEGIMVGNACMQLQQLISLGKPLSSLLTL