Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054826.t1 | AQZ26214.1 | 100 | 347 | 0 | 0 | 1 | 347 | 1 | 347 | 2.30E-172 | 615.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054826.t1 | Q1KLZ2 | 89.0 | 308 | 34 | 0 | 40 | 347 | 35 | 342 | 1.5e-156 | 553.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054826.t1 | A0A1U9XPL9 | 100.0 | 347 | 0 | 0 | 1 | 347 | 1 | 347 | 1.6e-172 | 615.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049264 | MS.gene054826 | 0.819858 | 9.31E-53 | -1.69E-46 |
| MS.gene049378 | MS.gene054826 | 0.843267 | 1.56E-58 | -1.69E-46 |
| MS.gene050226 | MS.gene054826 | 0.80699 | 6.29E-50 | -1.69E-46 |
| MS.gene050227 | MS.gene054826 | 0.81085 | 9.39E-51 | -1.69E-46 |
| MS.gene050228 | MS.gene054826 | 0.806439 | 8.22E-50 | -1.69E-46 |
| MS.gene052389 | MS.gene054826 | 0.834812 | 2.41E-56 | -1.69E-46 |
| MS.gene053147 | MS.gene054826 | 0.82137 | 4.19E-53 | -1.69E-46 |
| MS.gene054468 | MS.gene054826 | 0.84714 | 1.40E-59 | -1.69E-46 |
| MS.gene054581 | MS.gene054826 | 0.813357 | 2.67E-51 | -1.69E-46 |
| MS.gene054826 | MS.gene054930 | 0.836214 | 1.07E-56 | -1.69E-46 |
| MS.gene054826 | MS.gene055701 | 0.825315 | 5.01E-54 | -1.69E-46 |
| MS.gene054826 | MS.gene05761 | 0.838831 | 2.28E-57 | -1.69E-46 |
| MS.gene054826 | MS.gene058378 | 0.808132 | 3.60E-50 | -1.69E-46 |
| MS.gene054826 | MS.gene058650 | 0.880493 | 5.25E-70 | -1.69E-46 |
| MS.gene054826 | MS.gene058651 | 0.870095 | 1.89E-66 | -1.69E-46 |
| MS.gene054826 | MS.gene05872 | 0.80335 | 3.64E-49 | -1.69E-46 |
| MS.gene054826 | MS.gene060373 | 0.800268 | 1.56E-48 | -1.69E-46 |
| MS.gene054826 | MS.gene063004 | 0.815737 | 7.93E-52 | -1.69E-46 |
| MS.gene054826 | MS.gene063285 | -0.807627 | 4.61E-50 | -1.69E-46 |
| MS.gene054826 | MS.gene063498 | 0.809277 | 2.05E-50 | -1.69E-46 |
| MS.gene054826 | MS.gene06353 | 0.812898 | 3.36E-51 | -1.69E-46 |
| MS.gene054826 | MS.gene066015 | 0.804337 | 2.27E-49 | -1.69E-46 |
| MS.gene054826 | MS.gene069554 | 0.802241 | 6.16E-49 | -1.69E-46 |
| MS.gene054826 | MS.gene069868 | -0.862009 | 6.86E-64 | -1.69E-46 |
| MS.gene054826 | MS.gene071464 | 0.817805 | 2.73E-52 | -1.69E-46 |
| MS.gene054826 | MS.gene071699 | 0.819508 | 1.12E-52 | -1.69E-46 |
| MS.gene054826 | MS.gene071700 | 0.875117 | 3.97E-68 | -1.69E-46 |
| MS.gene054826 | MS.gene072618 | 0.803453 | 3.46E-49 | -1.69E-46 |
| MS.gene054826 | MS.gene074358 | 0.811352 | 7.31E-51 | -1.69E-46 |
| MS.gene054826 | MS.gene07536 | 0.852462 | 4.54E-61 | -1.69E-46 |
| MS.gene054826 | MS.gene07537 | 0.812636 | 3.84E-51 | -1.69E-46 |
| MS.gene054826 | MS.gene23021 | -0.812032 | 5.20E-51 | -1.69E-46 |
| MS.gene054826 | MS.gene25967 | 0.895184 | 1.22E-75 | -1.69E-46 |
| MS.gene054826 | MS.gene25968 | 0.894759 | 1.82E-75 | -1.69E-46 |
| MS.gene054826 | MS.gene27500 | 0.831468 | 1.64E-55 | -1.69E-46 |
| MS.gene054826 | MS.gene28862 | 0.801905 | 7.22E-49 | -1.69E-46 |
| MS.gene054826 | MS.gene29000 | 0.817503 | 3.19E-52 | -1.69E-46 |
| MS.gene054826 | MS.gene29359 | 0.889401 | 2.50E-73 | -1.69E-46 |
| MS.gene054826 | MS.gene29360 | 0.863605 | 2.21E-64 | -1.69E-46 |
| MS.gene054826 | MS.gene29361 | 0.841897 | 3.60E-58 | -1.69E-46 |
| MS.gene054826 | MS.gene29986 | 0.835106 | 2.04E-56 | -1.69E-46 |
| MS.gene054826 | MS.gene31059 | 0.856321 | 3.48E-62 | -1.69E-46 |
| MS.gene054826 | MS.gene31116 | 0.809789 | 1.59E-50 | -1.69E-46 |
| MS.gene054826 | MS.gene31685 | 0.822277 | 2.58E-53 | -1.69E-46 |
| MS.gene054826 | MS.gene32874 | 0.802478 | 5.50E-49 | -1.69E-46 |
| MS.gene054826 | MS.gene34667 | 0.803448 | 3.47E-49 | -1.69E-46 |
| MS.gene054826 | MS.gene34784 | 0.808721 | 2.69E-50 | -1.69E-46 |
| MS.gene054826 | MS.gene35822 | 0.809063 | 2.28E-50 | -1.69E-46 |
| MS.gene054826 | MS.gene35823 | 0.808974 | 2.38E-50 | -1.69E-46 |
| MS.gene054826 | MS.gene35824 | 0.812296 | 4.55E-51 | -1.69E-46 |
| MS.gene054826 | MS.gene35864 | 0.805494 | 1.30E-49 | -1.69E-46 |
| MS.gene054826 | MS.gene35867 | 0.804564 | 2.03E-49 | -1.69E-46 |
| MS.gene054826 | MS.gene39338 | 0.800278 | 1.55E-48 | -1.69E-46 |
| MS.gene054826 | MS.gene49610 | 0.817496 | 3.20E-52 | -1.69E-46 |
| MS.gene054826 | MS.gene52059 | 0.828021 | 1.13E-54 | -1.69E-46 |
| MS.gene054826 | MS.gene52061 | 0.816427 | 5.56E-52 | -1.69E-46 |
| MS.gene054826 | MS.gene52446 | 0.862616 | 4.47E-64 | -1.69E-46 |
| MS.gene054826 | MS.gene52512 | 0.815333 | 9.75E-52 | -1.69E-46 |
| MS.gene054826 | MS.gene53771 | 0.821745 | 3.43E-53 | -1.69E-46 |
| MS.gene054826 | MS.gene53859 | -0.827131 | 1.85E-54 | -1.69E-46 |
| MS.gene054826 | MS.gene53861 | -0.850865 | 1.29E-60 | -1.69E-46 |
| MS.gene054826 | MS.gene55041 | 0.817437 | 3.30E-52 | -1.69E-46 |
| MS.gene054826 | MS.gene55717 | 0.807405 | 5.14E-50 | -1.69E-46 |
| MS.gene054826 | MS.gene56004 | 0.814156 | 1.78E-51 | -1.69E-46 |
| MS.gene054826 | MS.gene58049 | 0.831962 | 1.24E-55 | -1.69E-46 |
| MS.gene054826 | MS.gene59282 | 0.801481 | 8.82E-49 | -1.69E-46 |
| MS.gene054826 | MS.gene59552 | 0.82204 | 2.93E-53 | -1.69E-46 |
| MS.gene054826 | MS.gene61139 | 0.803531 | 3.33E-49 | -1.69E-46 |
| MS.gene054826 | MS.gene61206 | 0.806735 | 7.12E-50 | -1.69E-46 |
| MS.gene054826 | MS.gene62587 | 0.803752 | 3.00E-49 | -1.69E-46 |
| MS.gene054826 | MS.gene63058 | 0.811414 | 7.09E-51 | -1.69E-46 |
| MS.gene054826 | MS.gene63507 | 0.802784 | 4.76E-49 | -1.69E-46 |
| MS.gene054826 | MS.gene64182 | 0.802481 | 5.50E-49 | -1.69E-46 |
| MS.gene054826 | MS.gene64645 | 0.801562 | 8.49E-49 | -1.69E-46 |
| MS.gene054826 | MS.gene68293 | 0.800948 | 1.13E-48 | -1.69E-46 |
| MS.gene054826 | MS.gene69014 | 0.809045 | 2.30E-50 | -1.69E-46 |
| MS.gene054826 | MS.gene69794 | 0.822923 | 1.83E-53 | -1.69E-46 |
| MS.gene054826 | MS.gene70021 | 0.814335 | 1.62E-51 | -1.69E-46 |
| MS.gene054826 | MS.gene70630 | 0.880483 | 5.29E-70 | -1.69E-46 |
| MS.gene054826 | MS.gene71450 | 0.812649 | 3.81E-51 | -1.69E-46 |
| MS.gene054826 | MS.gene73759 | 0.811513 | 6.74E-51 | -1.69E-46 |
| MS.gene054826 | MS.gene74696 | 0.807465 | 4.99E-50 | -1.69E-46 |
| MS.gene054826 | MS.gene76533 | -0.856768 | 2.57E-62 | -1.69E-46 |
| MS.gene054826 | MS.gene77208 | 0.806858 | 6.70E-50 | -1.69E-46 |
| MS.gene054826 | MS.gene77971 | -0.807469 | 4.98E-50 | -1.69E-46 |
| MS.gene054826 | MS.gene78230 | 0.804022 | 2.64E-49 | -1.69E-46 |
| MS.gene054826 | MS.gene78251 | -0.807857 | 4.12E-50 | -1.69E-46 |
| MS.gene054826 | MS.gene79661 | 0.805705 | 1.17E-49 | -1.69E-46 |
| MS.gene054826 | MS.gene79683 | 0.812579 | 3.95E-51 | -1.69E-46 |
| MS.gene054826 | MS.gene80809 | 0.81033 | 1.22E-50 | -1.69E-46 |
| MS.gene054826 | MS.gene84812 | 0.823684 | 1.21E-53 | -1.69E-46 |
| MS.gene054826 | MS.gene85149 | -0.85348 | 2.32E-61 | -1.69E-46 |
| MS.gene054826 | MS.gene85992 | 0.805052 | 1.61E-49 | -1.69E-46 |
| MS.gene054826 | MS.gene87115 | 0.844691 | 6.46E-59 | -1.69E-46 |
| MS.gene054826 | MS.gene87170 | 0.832759 | 7.87E-56 | -1.69E-46 |
| MS.gene054826 | MS.gene87685 | 0.833995 | 3.87E-56 | -1.69E-46 |
| MS.gene054826 | MS.gene88345 | 0.81516 | 1.07E-51 | -1.69E-46 |
| MS.gene054826 | MS.gene89108 | 0.831342 | 1.76E-55 | -1.69E-46 |
| MS.gene054826 | MS.gene92763 | 0.816133 | 6.47E-52 | -1.69E-46 |
| MS.gene054826 | MS.gene93622 | 0.801756 | 7.75E-49 | -1.69E-46 |
| MS.gene054826 | MS.gene94067 | 0.811374 | 7.23E-51 | -1.69E-46 |
| MS.gene054826 | MS.gene95269 | 0.804341 | 2.26E-49 | -1.69E-46 |
| MS.gene054826 | MS.gene96135 | 0.831587 | 1.53E-55 | -1.69E-46 |
| MS.gene054826 | MS.gene96457 | 0.813506 | 2.47E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene054826 | MS.gene44030 | PPI |
| MS.gene054826 | MS.gene80045 | PPI |
| MS.gene054826 | MS.gene000153 | PPI |
| MS.gene054826 | MS.gene024871 | PPI |
| MS.gene054826 | MS.gene26887 | PPI |
| MS.gene054826 | MS.gene92293 | PPI |
| MS.gene054826 | MS.gene005160 | PPI |
| MS.gene054826 | MS.gene21844 | PPI |
| MS.gene054826 | MS.gene70799 | PPI |
| MS.gene054826 | MS.gene006455 | PPI |
| MS.gene33576 | MS.gene054826 | PPI |
| MS.gene69913 | MS.gene054826 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054826.t1 | MTR_7g078070 | 99.138 | 348 | 2 | 1 | 1 | 347 | 1 | 348 | 0.0 | 707 |
| MS.gene054826.t1 | MTR_7g078070 | 99.291 | 282 | 2 | 0 | 66 | 347 | 7 | 288 | 0.0 | 578 |
| MS.gene054826.t1 | MTR_7g078070 | 99.608 | 255 | 1 | 0 | 93 | 347 | 1 | 255 | 0.0 | 524 |
| MS.gene054826.t1 | MTR_4g087490 | 56.061 | 330 | 133 | 4 | 21 | 348 | 16 | 335 | 1.21e-128 | 375 |
| MS.gene054826.t1 | MTR_1g081610 | 62.543 | 291 | 109 | 0 | 58 | 348 | 6 | 296 | 3.26e-122 | 357 |
| MS.gene054826.t1 | MTR_1g081625 | 60.751 | 293 | 115 | 0 | 56 | 348 | 3 | 295 | 1.15e-121 | 356 |
| MS.gene054826.t1 | MTR_5g006340 | 61.168 | 291 | 113 | 0 | 58 | 348 | 6 | 296 | 1.71e-121 | 355 |
| MS.gene054826.t1 | MTR_1g081620 | 61.246 | 289 | 112 | 0 | 60 | 348 | 7 | 295 | 5.29e-121 | 354 |
| MS.gene054826.t1 | MTR_1g103690 | 57.233 | 318 | 125 | 1 | 58 | 364 | 6 | 323 | 1.89e-119 | 350 |
| MS.gene054826.t1 | MTR_4g087510 | 56.897 | 290 | 116 | 2 | 59 | 348 | 46 | 326 | 1.40e-117 | 347 |
| MS.gene054826.t1 | MTR_1g081640 | 58.156 | 282 | 118 | 0 | 55 | 336 | 2 | 283 | 4.50e-111 | 328 |
| MS.gene054826.t1 | MTR_7g087110 | 51.090 | 321 | 143 | 3 | 28 | 348 | 37 | 343 | 1.98e-104 | 313 |
| MS.gene054826.t1 | MTR_4g087520 | 62.241 | 241 | 91 | 0 | 108 | 348 | 1 | 241 | 2.78e-99 | 296 |
| MS.gene054826.t1 | MTR_5g095670 | 28.834 | 326 | 174 | 5 | 68 | 336 | 52 | 376 | 6.64e-36 | 136 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054826.t1 | AT3G61440 | 80.625 | 320 | 58 | 1 | 28 | 347 | 21 | 336 | 0.0 | 521 |
| MS.gene054826.t1 | AT3G61440 | 79.392 | 296 | 57 | 1 | 28 | 323 | 21 | 312 | 4.20e-169 | 476 |
| MS.gene054826.t1 | AT3G61440 | 85.417 | 240 | 35 | 0 | 108 | 347 | 1 | 240 | 2.61e-145 | 414 |
| MS.gene054826.t1 | AT3G61440 | 86.047 | 215 | 30 | 0 | 133 | 347 | 1 | 215 | 3.42e-130 | 374 |
| MS.gene054826.t1 | AT3G59760 | 56.083 | 337 | 129 | 2 | 57 | 393 | 110 | 427 | 8.53e-128 | 375 |
| MS.gene054826.t1 | AT3G59760 | 60.616 | 292 | 115 | 0 | 57 | 348 | 110 | 401 | 7.47e-124 | 365 |
| MS.gene054826.t1 | AT3G59760 | 60.616 | 292 | 115 | 0 | 57 | 348 | 110 | 401 | 1.04e-123 | 365 |
| MS.gene054826.t1 | AT4G14880 | 60.690 | 290 | 114 | 0 | 58 | 347 | 3 | 292 | 1.62e-122 | 358 |
| MS.gene054826.t1 | AT4G14880 | 60.690 | 290 | 114 | 0 | 58 | 347 | 3 | 292 | 1.62e-122 | 358 |
| MS.gene054826.t1 | AT4G14880 | 60.690 | 290 | 114 | 0 | 58 | 347 | 3 | 292 | 1.62e-122 | 358 |
| MS.gene054826.t1 | AT4G14880 | 60.690 | 290 | 114 | 0 | 58 | 347 | 3 | 292 | 1.62e-122 | 358 |
| MS.gene054826.t1 | AT4G14880 | 60.690 | 290 | 114 | 0 | 58 | 347 | 3 | 292 | 1.62e-122 | 358 |
| MS.gene054826.t1 | AT2G43750 | 58.904 | 292 | 120 | 0 | 57 | 348 | 72 | 363 | 9.89e-120 | 353 |
| MS.gene054826.t1 | AT2G43750 | 58.904 | 292 | 120 | 0 | 57 | 348 | 72 | 363 | 9.89e-120 | 353 |
| MS.gene054826.t1 | AT3G04940 | 56.897 | 290 | 125 | 0 | 59 | 348 | 7 | 296 | 2.61e-110 | 327 |
| MS.gene054826.t1 | AT3G04940 | 56.897 | 290 | 125 | 0 | 59 | 348 | 7 | 296 | 2.61e-110 | 327 |
| MS.gene054826.t1 | AT5G28020 | 56.055 | 289 | 127 | 0 | 60 | 348 | 7 | 295 | 1.16e-103 | 310 |
| MS.gene054826.t1 | AT5G28020 | 56.055 | 289 | 127 | 0 | 60 | 348 | 7 | 295 | 1.16e-103 | 310 |
| MS.gene054826.t1 | AT5G28020 | 56.055 | 289 | 127 | 0 | 60 | 348 | 7 | 295 | 1.16e-103 | 310 |
| MS.gene054826.t1 | AT5G28020 | 56.055 | 289 | 127 | 0 | 60 | 348 | 7 | 295 | 1.16e-103 | 310 |
| MS.gene054826.t1 | AT5G28020 | 56.055 | 289 | 127 | 0 | 60 | 348 | 7 | 295 | 1.16e-103 | 310 |
| MS.gene054826.t1 | AT3G03630 | 55.862 | 290 | 118 | 1 | 59 | 348 | 98 | 377 | 3.15e-101 | 306 |
| MS.gene054826.t1 | AT5G28030 | 55.363 | 289 | 129 | 0 | 60 | 348 | 7 | 295 | 2.41e-99 | 299 |
| MS.gene054826.t1 | AT5G28030 | 55.363 | 289 | 129 | 0 | 60 | 348 | 7 | 295 | 2.41e-99 | 299 |
| MS.gene054826.t1 | AT5G28030 | 55.363 | 289 | 129 | 0 | 60 | 348 | 7 | 295 | 2.41e-99 | 299 |
| MS.gene054826.t1 | AT5G28030 | 55.363 | 289 | 129 | 0 | 60 | 348 | 7 | 295 | 2.41e-99 | 299 |
| MS.gene054826.t1 | AT3G22460 | 59.167 | 240 | 78 | 1 | 108 | 347 | 1 | 220 | 4.35e-98 | 293 |
| MS.gene054826.t1 | AT5G28030 | 53.968 | 252 | 116 | 0 | 60 | 311 | 7 | 258 | 4.04e-86 | 263 |
| MS.gene054826.t1 | AT3G22460 | 62.431 | 181 | 68 | 0 | 60 | 240 | 8 | 188 | 6.72e-81 | 247 |
| MS.gene054826.t1 | AT5G28020 | 54.067 | 209 | 96 | 0 | 140 | 348 | 1 | 209 | 4.43e-66 | 211 |
| MS.gene054826.t1 | AT1G55880 | 28.249 | 354 | 195 | 6 | 41 | 336 | 21 | 373 | 1.13e-35 | 136 |
| MS.gene054826.t1 | AT1G55880 | 29.259 | 270 | 149 | 4 | 41 | 269 | 21 | 289 | 5.04e-31 | 122 |
Find 104 sgRNAs with CRISPR-Local
Find 173 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGGAATCAGTTTGGCATTTA+TGG | 0.111575 | 7.2:-27640915 | MS.gene054826:CDS |
| GAGAAAATCACCTTAACATT+AGG | 0.229682 | 7.2:+27640250 | None:intergenic |
| GGTAGCGGAGGCACGGTTTC+CGG | 0.231220 | 7.2:-27640301 | MS.gene054826:CDS |
| TTTCAATCATATTAGATATA+TGG | 0.257432 | 7.2:-27640156 | MS.gene054826:intron |
| GTAGCGGAGGCACGGTTTCC+GGG | 0.287571 | 7.2:-27640300 | MS.gene054826:CDS |
| CAGACTGTTCATCCAAGTTT+CGG | 0.294327 | 7.2:-27639373 | MS.gene054826:CDS |
| AGAAAATCACCTTAACATTA+GGG | 0.297633 | 7.2:+27640251 | None:intergenic |
| CAGCTTCTGTTCGAAGGTCT+TGG | 0.298409 | 7.2:+27639323 | None:intergenic |
| AACCTTACCTTAGTATTGGC+TGG | 0.308983 | 7.2:+27640698 | None:intergenic |
| AAACAACAGGTCCTGAGATA+TGG | 0.318320 | 7.2:-27640366 | MS.gene054826:CDS |
| AGGGTTTGTATGAGAGCATT+TGG | 0.332544 | 7.2:-27640833 | MS.gene054826:CDS |
| TTGATTCAACTAACCTTTCC+AGG | 0.333739 | 7.2:+27641050 | None:intergenic |
| AGACTGTTCATCCAAGTTTC+GGG | 0.334413 | 7.2:-27639372 | MS.gene054826:CDS |
| GACATATTTGTGATGGGAAT+AGG | 0.357383 | 7.2:-27640322 | MS.gene054826:CDS |
| ACAGGTCCTCATCAAATAAC+TGG | 0.359927 | 7.2:-27639995 | MS.gene054826:intron |
| TTCTAGGTTGGTATATCGTC+TGG | 0.366637 | 7.2:-27639616 | MS.gene054826:intron |
| AATGGGAGGAACAGTGAAAA+AGG | 0.372245 | 7.2:-27640777 | MS.gene054826:CDS |
| TGGATTCAAACCAGACATAT+TGG | 0.377923 | 7.2:-27639963 | MS.gene054826:CDS |
| TACCATGAGTCCTTCTTTCA+AGG | 0.380319 | 7.2:+27639776 | None:intergenic |
| TGTTGCAGCATAAAAGCATT+TGG | 0.385420 | 7.2:+27640731 | None:intergenic |
| ATCAGTTTGCCTTTGTTCTC+AGG | 0.387081 | 7.2:+27639556 | None:intergenic |
| AACCATCTTATATCCCTTCA+TGG | 0.389444 | 7.2:+27640889 | None:intergenic |
| GTTCCTCCCATTCCTTTCGT+TGG | 0.398796 | 7.2:+27640788 | None:intergenic |
| CTTTCCAAGCTTGTGTAAGA+TGG | 0.401441 | 7.2:+27640857 | None:intergenic |
| CCTCATCAAATAACTGGAAA+TGG | 0.407277 | 7.2:-27639989 | MS.gene054826:CDS |
| GGCATTTATGGCTGCCATGA+AGG | 0.421016 | 7.2:-27640903 | MS.gene054826:CDS |
| ATCACAAAACCCTAATGTTA+AGG | 0.422500 | 7.2:-27640260 | MS.gene054826:intron |
| CTTACACAAGCTTGGAAAGA+AGG | 0.427704 | 7.2:-27640853 | MS.gene054826:CDS |
| GGAGGCACGGTTTCCGGGGT+TGG | 0.433673 | 7.2:-27640295 | MS.gene054826:CDS |
| ATCAACCTCCTCATCATCAT+TGG | 0.433901 | 7.2:+27642206 | None:intergenic |
| TGTTAACCTTACCTTAGTAT+TGG | 0.438994 | 7.2:+27640694 | None:intergenic |
| CAGACCGGCACTTGCTATGA+TGG | 0.446594 | 7.2:-27641102 | MS.gene054826:CDS |
| CATATTGGACATGGATGTAA+TGG | 0.448326 | 7.2:-27639948 | MS.gene054826:CDS |
| AGGCAACATGGGAATCAGTT+TGG | 0.448530 | 7.2:-27640924 | MS.gene054826:CDS |
| ACATCCATGTCCAATATGTC+TGG | 0.450862 | 7.2:+27639953 | None:intergenic |
| AGACATTAATCGACCGAGAC+TGG | 0.451069 | 7.2:+27639289 | None:intergenic |
| AGATATCGTTCCCCGAAACT+TGG | 0.451933 | 7.2:+27639361 | None:intergenic |
| TACCTTAGTATTGGCTGGGT+TGG | 0.454890 | 7.2:+27640703 | None:intergenic |
| CAAATAACTGGAAATGGTGT+TGG | 0.466995 | 7.2:-27639983 | MS.gene054826:CDS |
| ACCTTACCTTAGTATTGGCT+GGG | 0.467817 | 7.2:+27640699 | None:intergenic |
| TTCCAACCCAGCCAATACTA+AGG | 0.471629 | 7.2:-27640705 | MS.gene054826:intron |
| ATTCCCATGTTGCCTGATGT+TGG | 0.472301 | 7.2:+27640932 | None:intergenic |
| CACAGTTGCAGCACTCAGAT+TGG | 0.473290 | 7.2:-27639587 | MS.gene054826:CDS |
| TTGGTACCAGGAAGATCTTT+AGG | 0.474343 | 7.2:+27642125 | None:intergenic |
| AACAACAGGTCCTGAGATAT+GGG | 0.481398 | 7.2:-27640365 | MS.gene054826:CDS |
| GATTTGCCTAAAGATCTTCC+TGG | 0.483439 | 7.2:-27642131 | MS.gene054826:CDS |
| TTTGTATCCTCCCATATCTC+AGG | 0.504891 | 7.2:+27640355 | None:intergenic |
| TCCTCATCATCATTGGATGC+TGG | 0.506377 | 7.2:+27642213 | None:intergenic |
| GCATTTATGGCTGCCATGAA+GGG | 0.510121 | 7.2:-27640902 | MS.gene054826:CDS |
| ACGGATCCAACGAAAGGAAT+GGG | 0.510673 | 7.2:-27640794 | MS.gene054826:CDS |
| AGTTAACATGGCTAGGACAT+TGG | 0.511456 | 7.2:-27639799 | MS.gene054826:CDS |
| TGGAGCTGAATTGATTCTCA+CGG | 0.517514 | 7.2:-27640813 | MS.gene054826:CDS |
| TATGCCATCTTACACAAGCT+TGG | 0.524193 | 7.2:-27640861 | MS.gene054826:CDS |
| TTACACAAGCTTGGAAAGAA+GGG | 0.524356 | 7.2:-27640852 | MS.gene054826:CDS |
| GAGATATGGGAGGATACAAA+TGG | 0.524396 | 7.2:-27640352 | MS.gene054826:CDS |
| CACGGATCCAACGAAAGGAA+TGG | 0.526798 | 7.2:-27640795 | MS.gene054826:CDS |
| CATTTGGTGTGGATTCCAAA+AGG | 0.529158 | 7.2:+27640747 | None:intergenic |
| ATTCTGATAGAGCCAACATC+AGG | 0.532002 | 7.2:-27640944 | MS.gene054826:CDS |
| CAGTGAAGATGCAGTTAACA+TGG | 0.541587 | 7.2:-27639811 | MS.gene054826:CDS |
| AGGACATTGGCCTTGAAAGA+AGG | 0.544017 | 7.2:-27639786 | MS.gene054826:CDS |
| GTGCTGAATGGTGGTAAACC+TGG | 0.548416 | 7.2:-27640111 | MS.gene054826:intron |
| TAGCGGAGGCACGGTTTCCG+GGG | 0.556029 | 7.2:-27640299 | MS.gene054826:CDS |
| TATCTTAACAAAGTAACTGA+AGG | 0.556227 | 7.2:-27641547 | MS.gene054826:CDS |
| GTTTGCCTTTGTTCTCAGGA+AGG | 0.556474 | 7.2:+27639560 | None:intergenic |
| TGCCATGAAGGGATATAAGA+TGG | 0.557496 | 7.2:-27640891 | MS.gene054826:CDS |
| CAGGTGCATTTCGAAACAAC+AGG | 0.558100 | 7.2:-27640379 | MS.gene054826:CDS |
| TGAAAACATGCAGCCAGTCT+CGG | 0.562721 | 7.2:-27639302 | MS.gene054826:CDS |
| AGAGCCAACATCAGGCAACA+TGG | 0.563901 | 7.2:-27640936 | MS.gene054826:CDS |
| TTCAGCACATTACTTTCCGA+TGG | 0.565331 | 7.2:+27640126 | None:intergenic |
| CTACTGCTAGCATCAAAGAC+AGG | 0.569459 | 7.2:-27641483 | MS.gene054826:intron |
| GAACAAAGGCAAACTGATTG+TGG | 0.571821 | 7.2:-27639551 | MS.gene054826:CDS |
| GAATTTGATAACTCCTGGAA+AGG | 0.576005 | 7.2:-27641063 | MS.gene054826:intron |
| CAGCATAAAAGCATTTGGTG+TGG | 0.576924 | 7.2:+27640736 | None:intergenic |
| GGCCTTGAAAGAAGGACTCA+TGG | 0.577659 | 7.2:-27639778 | MS.gene054826:intron |
| ACAAGTTGACATATTTGTGA+TGG | 0.584399 | 7.2:-27640329 | MS.gene054826:CDS |
| CCATTTCCAGTTATTTGATG+AGG | 0.589789 | 7.2:+27639989 | None:intergenic |
| CAAGTTGACATATTTGTGAT+GGG | 0.592268 | 7.2:-27640328 | MS.gene054826:CDS |
| GGGAATAGGTAGCGGAGGCA+CGG | 0.600122 | 7.2:-27640308 | MS.gene054826:CDS |
| AACAAAGTAACTGAAGGATG+TGG | 0.601957 | 7.2:-27641541 | MS.gene054826:CDS |
| TCTTCCATCATAGCAAGTGC+CGG | 0.604090 | 7.2:+27641098 | None:intergenic |
| GCCAGCATCCAATGATGATG+AGG | 0.606622 | 7.2:-27642214 | MS.gene054826:CDS |
| CAAACCAGACATATTGGACA+TGG | 0.607682 | 7.2:-27639957 | MS.gene054826:CDS |
| CTGTCTTTGATGCTAGCAGT+AGG | 0.608366 | 7.2:+27641484 | None:intergenic |
| ATGAAGAAGAGGTTCTCTTG+AGG | 0.609055 | 7.2:+27642258 | None:intergenic |
| ATCATATTAGATATATGGAG+TGG | 0.610130 | 7.2:-27640151 | MS.gene054826:intron |
| AAGATGCAGTTAACATGGCT+AGG | 0.610341 | 7.2:-27639806 | MS.gene054826:CDS |
| GAGCCAACATCAGGCAACAT+GGG | 0.610601 | 7.2:-27640935 | MS.gene054826:CDS |
| TCTAGTTGTATGAAAACTCG+TGG | 0.614683 | 7.2:+27639265 | None:intergenic |
| TCGGAAAGTAATGTGCTGAA+TGG | 0.616881 | 7.2:-27640123 | MS.gene054826:CDS |
| TTTGTGATGGGAATAGGTAG+CGG | 0.619890 | 7.2:-27640316 | MS.gene054826:CDS |
| AAAAGATGAAGAATCAACAC+TGG | 0.622283 | 7.2:+27642169 | None:intergenic |
| GATATATGGAGTGGAGCCAT+CGG | 0.622757 | 7.2:-27640142 | MS.gene054826:CDS |
| TCGAAGGTCTTGGAACAAGA+CGG | 0.631912 | 7.2:+27639333 | None:intergenic |
| ATTCTCACGGATCCAACGAA+AGG | 0.634433 | 7.2:-27640800 | MS.gene054826:CDS |
| TAATGATGATGATGAAGAAG+AGG | 0.636238 | 7.2:+27642247 | None:intergenic |
| TTTAAGATATTGTCCAACCC+CGG | 0.638530 | 7.2:+27640282 | None:intergenic |
| GACTGTTCATCCAAGTTTCG+GGG | 0.652256 | 7.2:-27639371 | MS.gene054826:CDS |
| GCTAACCTTCCTGAGAACAA+AGG | 0.659190 | 7.2:-27639565 | MS.gene054826:CDS |
| AGCATCCAATGATGATGAGG+AGG | 0.662832 | 7.2:-27642211 | MS.gene054826:CDS |
| GTGATGGGAATAGGTAGCGG+AGG | 0.681582 | 7.2:-27640313 | MS.gene054826:CDS |
| ACTTTGTTAAGATAAACAAG+TGG | 0.682462 | 7.2:+27641556 | None:intergenic |
| GAAAGTAATGTGCTGAATGG+TGG | 0.685581 | 7.2:-27640120 | MS.gene054826:CDS |
| AACAGGTCCTGAGATATGGG+AGG | 0.695778 | 7.2:-27640362 | MS.gene054826:CDS |
| GATCCAACGAAAGGAATGGG+AGG | 0.697448 | 7.2:-27640791 | MS.gene054826:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAAAAAAATTCTTGAATTT+TGG | + | chr7.2:27639631-27639650 | None:intergenic | 10.0% |
| !!! | AAAAAAAATTCTTGAATTTT+GGG | + | chr7.2:27639630-27639649 | None:intergenic | 10.0% |
| !! | TATGATTGAAAAAATTTCAA+AGG | + | chr7.2:27641379-27641398 | None:intergenic | 15.0% |
| !! | TTTCAATCATATTAGATATA+TGG | - | chr7.2:27641388-27641407 | MS.gene054826:intron | 15.0% |
| !! | AATCATTAGATGTATACAAA+AGG | - | chr7.2:27639729-27639748 | MS.gene054826:intron | 20.0% |
| !! | ATACATAACTTACGTTAAAA+TGG | - | chr7.2:27641137-27641156 | MS.gene054826:intron | 20.0% |
| !! | CATTGAATAAGAGAAAAAAT+TGG | + | chr7.2:27639922-27639941 | None:intergenic | 20.0% |
| !! | CTTGCAATTCAATATTATTA+AGG | + | chr7.2:27641869-27641888 | None:intergenic | 20.0% |
| !! | GTAATATGAATTGTAATCTT+AGG | + | chr7.2:27641319-27641338 | None:intergenic | 20.0% |
| !! | TACATAACTTACGTTAAAAT+GGG | - | chr7.2:27641138-27641157 | MS.gene054826:intron | 20.0% |
| !! | TATTATTAAGGTGAAATTCA+TGG | + | chr7.2:27641857-27641876 | None:intergenic | 20.0% |
| !!! | AAAAGGAATTTGAAATATAG+AGG | + | chr7.2:27640098-27640117 | None:intergenic | 20.0% |
| !!! | AAAGGAATTTGAAATATAGA+GGG | + | chr7.2:27640097-27640116 | None:intergenic | 20.0% |
| !!! | CAATTTATTTTTCAGCTTAT+TGG | - | chr7.2:27639958-27639977 | MS.gene054826:CDS | 20.0% |
| !!! | TTTTTTCTTCGAATTTTTCT+AGG | - | chr7.2:27641912-27641931 | MS.gene054826:intron | 20.0% |
| ! | AAATTCGGTCAAATTTAAAG+CGG | + | chr7.2:27640128-27640147 | None:intergenic | 25.0% |
| ! | AATAATCGATGCAATTTGAA+AGG | - | chr7.2:27640322-27640341 | MS.gene054826:CDS | 25.0% |
| ! | AATGTTTGTTCTTCAAACTT+TGG | + | chr7.2:27639829-27639848 | None:intergenic | 25.0% |
| ! | ACTTTGTTAAGATAAACAAG+TGG | + | chr7.2:27639991-27640010 | None:intergenic | 25.0% |
| ! | AGAAAATCACCTTAACATTA+GGG | + | chr7.2:27641296-27641315 | None:intergenic | 25.0% |
| ! | ATAGTACTTTGTTCCTTAAT+TGG | - | chr7.2:27639501-27639520 | MS.gene054826:CDS | 25.0% |
| ! | ATATACATGTACTTACTTCT+AGG | + | chr7.2:27641629-27641648 | None:intergenic | 25.0% |
| ! | ATCATATTAGATATATGGAG+TGG | - | chr7.2:27641393-27641412 | MS.gene054826:intron | 25.0% |
| ! | ATTCATGTGATTTACTTGAT+TGG | + | chr7.2:27640153-27640172 | None:intergenic | 25.0% |
| ! | TACAAGAAAAAATCTCAAGA+AGG | - | chr7.2:27640357-27640376 | MS.gene054826:CDS | 25.0% |
| ! | TACTATTTATGTTCGAAACA+GGG | - | chr7.2:27640886-27640905 | MS.gene054826:CDS | 25.0% |
| ! | TATCTTAACAAAGTAACTGA+AGG | - | chr7.2:27639997-27640016 | MS.gene054826:intron | 25.0% |
| !! | AAAAAGAATTTGATAACTCC+TGG | - | chr7.2:27640476-27640495 | MS.gene054826:intron | 25.0% |
| !! | AAGGAATTTGAAATATAGAG+GGG | + | chr7.2:27640096-27640115 | None:intergenic | 25.0% |
| !! | AGTTGGATAGAGAAATATTT+TGG | + | chr7.2:27639601-27639620 | None:intergenic | 25.0% |
| !! | TCATTTGCTTGCATATTTTA+AGG | + | chr7.2:27642032-27642051 | None:intergenic | 25.0% |
| !! | TTTACTTGATTGGTCAAATT+CGG | + | chr7.2:27640143-27640162 | None:intergenic | 25.0% |
| !!! | TCAGTTCACTTTTTATCAAA+AGG | - | chr7.2:27639801-27639820 | MS.gene054826:CDS | 25.0% |
| !!! | TGAAACATGTTTTTTGATGT+TGG | + | chr7.2:27639441-27639460 | None:intergenic | 25.0% |
| !!! | TTATTTTTCAGCTTATTGGT+AGG | - | chr7.2:27639962-27639981 | MS.gene054826:CDS | 25.0% |
| AAAAGATGAAGAATCAACAC+TGG | + | chr7.2:27639378-27639397 | None:intergenic | 30.0% | |
| AACATAAGTTTGTGACAGTT+AGG | + | chr7.2:27641701-27641720 | None:intergenic | 30.0% | |
| ATCACAAAACCCTAATGTTA+AGG | - | chr7.2:27641284-27641303 | MS.gene054826:intron | 30.0% | |
| ATGTAAACAACGAGCAAAAT+TGG | + | chr7.2:27640534-27640553 | None:intergenic | 30.0% | |
| CATCAAAAAACATGTTTCAC+AGG | - | chr7.2:27639442-27639461 | MS.gene054826:intron | 30.0% | |
| GAGAAAATCACCTTAACATT+AGG | + | chr7.2:27641297-27641316 | None:intergenic | 30.0% | |
| GGATCGTAAAAAATAGTAGT+TGG | + | chr7.2:27641039-27641058 | None:intergenic | 30.0% | |
| GTACTATTTATGTTCGAAAC+AGG | - | chr7.2:27640885-27640904 | MS.gene054826:CDS | 30.0% | |
| TCACAAACTTATGTTGTTGT+AGG | - | chr7.2:27641706-27641725 | MS.gene054826:intron | 30.0% | |
| TGTTAACCTTACCTTAGTAT+TGG | + | chr7.2:27640853-27640872 | None:intergenic | 30.0% | |
| TTACGTTAAAATGGGAAAAC+AGG | - | chr7.2:27641146-27641165 | MS.gene054826:intron | 30.0% | |
| TTCGTGTTTGTGTTAATTGA+TGG | - | chr7.2:27640569-27640588 | MS.gene054826:intron | 30.0% | |
| TTGTTAGATAGTAGCTATGA+CGG | - | chr7.2:27640909-27640928 | MS.gene054826:CDS | 30.0% | |
| ! | ACAAGTTGACATATTTGTGA+TGG | - | chr7.2:27641215-27641234 | MS.gene054826:intron | 30.0% |
| ! | AGGAATTTGAAATATAGAGG+GGG | + | chr7.2:27640095-27640114 | None:intergenic | 30.0% |
| ! | CAAGTTGACATATTTGTGAT+GGG | - | chr7.2:27641216-27641235 | MS.gene054826:intron | 30.0% |
| ! | TAATGATGATGATGAAGAAG+AGG | + | chr7.2:27639300-27639319 | None:intergenic | 30.0% |
| ! | TTCTTCGAATTTTTCTAGGT+TGG | - | chr7.2:27641916-27641935 | MS.gene054826:intron | 30.0% |
| ! | TTTAAAGCGGTATCTACAAA+AGG | + | chr7.2:27640115-27640134 | None:intergenic | 30.0% |
| !! | TGAATTTTGGGTAATGAAGT+TGG | + | chr7.2:27639618-27639637 | None:intergenic | 30.0% |
| AACAAAGTAACTGAAGGATG+TGG | - | chr7.2:27640003-27640022 | MS.gene054826:intron | 35.0% | |
| AACCATCTTATATCCCTTCA+TGG | + | chr7.2:27640658-27640677 | None:intergenic | 35.0% | |
| ATCGATGCAATTTGAAAGGT+CGG | - | chr7.2:27640326-27640345 | MS.gene054826:CDS | 35.0% | |
| ATTTGATGAGGACCTGTATA+TGG | + | chr7.2:27641546-27641565 | None:intergenic | 35.0% | |
| CAAATAACTGGAAATGGTGT+TGG | - | chr7.2:27641561-27641580 | MS.gene054826:CDS | 35.0% | |
| CAAGTCTCTTACTGCAAAAT+CGG | - | chr7.2:27641513-27641532 | MS.gene054826:CDS | 35.0% | |
| CAGCAGAACATCAACAAAAT+TGG | + | chr7.2:27639690-27639709 | None:intergenic | 35.0% | |
| CATATTGGACATGGATGTAA+TGG | - | chr7.2:27641596-27641615 | MS.gene054826:intron | 35.0% | |
| CCATTTCCAGTTATTTGATG+AGG | + | chr7.2:27641558-27641577 | None:intergenic | 35.0% | |
| CCTCATCAAATAACTGGAAA+TGG | - | chr7.2:27641555-27641574 | MS.gene054826:CDS | 35.0% | |
| GAAACAAAATGATGCTTACC+AGG | + | chr7.2:27641454-27641473 | None:intergenic | 35.0% | |
| TGACAGTTAGGATAAACACA+AGG | + | chr7.2:27641689-27641708 | None:intergenic | 35.0% | |
| TGGATTCAAACCAGACATAT+TGG | - | chr7.2:27641581-27641600 | MS.gene054826:intron | 35.0% | |
| TTACACAAGCTTGGAAAGAA+GGG | - | chr7.2:27640692-27640711 | MS.gene054826:intron | 35.0% | |
| TTGATTCAACTAACCTTTCC+AGG | + | chr7.2:27640497-27640516 | None:intergenic | 35.0% | |
| TTTCTTGAATTTCGACAGAC+CGG | - | chr7.2:27640427-27640446 | MS.gene054826:intron | 35.0% | |
| ! | AAACCAGTGTTTGTTAACCA+CGG | + | chr7.2:27641060-27641079 | None:intergenic | 35.0% |
| ! | ATGCTGTAACTGTTTTGCAT+TGG | - | chr7.2:27639532-27639551 | MS.gene054826:CDS | 35.0% |
| ! | GAAAAAGGCTTATGACCTTT+TGG | - | chr7.2:27640782-27640801 | MS.gene054826:CDS | 35.0% |
| ! | GAATTTGATAACTCCTGGAA+AGG | - | chr7.2:27640481-27640500 | MS.gene054826:intron | 35.0% |
| ! | GACATATTTGTGATGGGAAT+AGG | - | chr7.2:27641222-27641241 | MS.gene054826:intron | 35.0% |
| ! | TTTAAGATATTGTCCAACCC+CGG | + | chr7.2:27641265-27641284 | None:intergenic | 35.0% |
| ! | TTTGAAATATAGAGGGGGTA+AGG | + | chr7.2:27640090-27640109 | None:intergenic | 35.0% |
| !! | TCAAGAAGGTCGTGTTTTTA+GGG | - | chr7.2:27640371-27640390 | MS.gene054826:CDS | 35.0% |
| !! | TGTTGCAGCATAAAAGCATT+TGG | + | chr7.2:27640816-27640835 | None:intergenic | 35.0% |
| !!! | AAATATTTTGGCCATACACG+TGG | + | chr7.2:27639589-27639608 | None:intergenic | 35.0% |
| !!! | CTACTATTTTTTACGATCCG+TGG | - | chr7.2:27641040-27641059 | MS.gene054826:intron | 35.0% |
| !!! | TGTTTTTTGATGTTGGTACC+AGG | + | chr7.2:27639434-27639453 | None:intergenic | 35.0% |
| AAACAACAGGTCCTGAGATA+TGG | - | chr7.2:27641178-27641197 | MS.gene054826:intron | 40.0% | |
| AACAACAGGTCCTGAGATAT+GGG | - | chr7.2:27641179-27641198 | MS.gene054826:intron | 40.0% | |
| AAGATGCAGTTAACATGGCT+AGG | - | chr7.2:27641738-27641757 | MS.gene054826:intron | 40.0% | |
| AATGGGAGGAACAGTGAAAA+AGG | - | chr7.2:27640767-27640786 | MS.gene054826:CDS | 40.0% | |
| ACAGGTCCTCATCAAATAAC+TGG | - | chr7.2:27641549-27641568 | MS.gene054826:CDS | 40.0% | |
| ACATCCATGTCCAATATGTC+TGG | + | chr7.2:27641594-27641613 | None:intergenic | 40.0% | |
| AGACTGTTCATCCAAGTTTC+GGG | - | chr7.2:27642172-27642191 | MS.gene054826:CDS | 40.0% | |
| AGCATCACAGTCACCAATTA+AGG | + | chr7.2:27639517-27639536 | None:intergenic | 40.0% | |
| AGTTAACATGGCTAGGACAT+TGG | - | chr7.2:27641745-27641764 | MS.gene054826:intron | 40.0% | |
| ATCAACCTCCTCATCATCAT+TGG | + | chr7.2:27639341-27639360 | None:intergenic | 40.0% | |
| ATCAGTTTGCCTTTGTTCTC+AGG | + | chr7.2:27641991-27642010 | None:intergenic | 40.0% | |
| ATCGGATGTTGTCCATATAC+AGG | - | chr7.2:27641531-27641550 | MS.gene054826:CDS | 40.0% | |
| ATGAAGAAGAGGTTCTCTTG+AGG | + | chr7.2:27639289-27639308 | None:intergenic | 40.0% | |
| ATTCTGATAGAGCCAACATC+AGG | - | chr7.2:27640600-27640619 | MS.gene054826:intron | 40.0% | |
| CAAACCAGACATATTGGACA+TGG | - | chr7.2:27641587-27641606 | MS.gene054826:intron | 40.0% | |
| CAGACTGTTCATCCAAGTTT+CGG | - | chr7.2:27642171-27642190 | MS.gene054826:CDS | 40.0% | |
| CAGTGAAGATGCAGTTAACA+TGG | - | chr7.2:27641733-27641752 | MS.gene054826:intron | 40.0% | |
| CCATCAAATAGTGACTAGAG+CGG | - | chr7.2:27640981-27641000 | MS.gene054826:intron | 40.0% | |
| CTTACACAAGCTTGGAAAGA+AGG | - | chr7.2:27640691-27640710 | MS.gene054826:intron | 40.0% | |
| CTTTCCAAGCTTGTGTAAGA+TGG | + | chr7.2:27640690-27640709 | None:intergenic | 40.0% | |
| GAAAGTAATGTGCTGAATGG+TGG | - | chr7.2:27641424-27641443 | MS.gene054826:intron | 40.0% | |
| GAACAAAGGCAAACTGATTG+TGG | - | chr7.2:27641993-27642012 | MS.gene054826:intron | 40.0% | |
| GAGATATGGGAGGATACAAA+TGG | - | chr7.2:27641192-27641211 | MS.gene054826:intron | 40.0% | |
| GATTTGCCTAAAGATCTTCC+TGG | - | chr7.2:27639413-27639432 | MS.gene054826:intron | 40.0% | |
| GGGAATCAGTTTGGCATTTA+TGG | - | chr7.2:27640629-27640648 | MS.gene054826:intron | 40.0% | |
| TACCATGAGTCCTTCTTTCA+AGG | + | chr7.2:27641771-27641790 | None:intergenic | 40.0% | |
| TATGCCATCTTACACAAGCT+TGG | - | chr7.2:27640683-27640702 | MS.gene054826:intron | 40.0% | |
| TCGGAAAGTAATGTGCTGAA+TGG | - | chr7.2:27641421-27641440 | MS.gene054826:intron | 40.0% | |
| TGCCATGAAGGGATATAAGA+TGG | - | chr7.2:27640653-27640672 | MS.gene054826:intron | 40.0% | |
| TTCAGCACATTACTTTCCGA+TGG | + | chr7.2:27641421-27641440 | None:intergenic | 40.0% | |
| TTGGTACCAGGAAGATCTTT+AGG | + | chr7.2:27639422-27639441 | None:intergenic | 40.0% | |
| TTTGTATCCTCCCATATCTC+AGG | + | chr7.2:27641192-27641211 | None:intergenic | 40.0% | |
| ! | ATGCTTCGCACTGTGATTTT+AGG | - | chr7.2:27642103-27642122 | MS.gene054826:CDS | 40.0% |
| ! | CTCAAGAAGGTCGTGTTTTT+AGG | - | chr7.2:27640370-27640389 | MS.gene054826:CDS | 40.0% |
| ! | TGGAGCTGAATTGATTCTCA+CGG | - | chr7.2:27640731-27640750 | MS.gene054826:CDS | 40.0% |
| ! | TGTTTTCAGCTTCTGTTCGA+AGG | + | chr7.2:27642230-27642249 | None:intergenic | 40.0% |
| ! | TTTGTGATGGGAATAGGTAG+CGG | - | chr7.2:27641228-27641247 | MS.gene054826:intron | 40.0% |
| !! | AACCTTACCTTAGTATTGGC+TGG | + | chr7.2:27640849-27640868 | None:intergenic | 40.0% |
| !! | AACGAGCAAAATTGGTGTCA+TGG | + | chr7.2:27640526-27640545 | None:intergenic | 40.0% |
| !! | ACCTTACCTTAGTATTGGCT+GGG | + | chr7.2:27640848-27640867 | None:intergenic | 40.0% |
| !! | AGGGTTTGTATGAGAGCATT+TGG | - | chr7.2:27640711-27640730 | MS.gene054826:CDS | 40.0% |
| !! | CAGCATAAAAGCATTTGGTG+TGG | + | chr7.2:27640811-27640830 | None:intergenic | 40.0% |
| !! | CATTTGGTGTGGATTCCAAA+AGG | + | chr7.2:27640800-27640819 | None:intergenic | 40.0% |
| !! | TTCTAGGTTGGTATATCGTC+TGG | - | chr7.2:27641928-27641947 | MS.gene054826:intron | 40.0% |
| ACCCAGCCAATACTAAGGTA+AGG | - | chr7.2:27640844-27640863 | MS.gene054826:CDS | 45.0% | |
| ACGGATCCAACGAAAGGAAT+GGG | - | chr7.2:27640750-27640769 | MS.gene054826:CDS | 45.0% | |
| AGACATTAATCGACCGAGAC+TGG | + | chr7.2:27642258-27642277 | None:intergenic | 45.0% | |
| AGATATCGTTCCCCGAAACT+TGG | + | chr7.2:27642186-27642205 | None:intergenic | 45.0% | |
| AGGCAACATGGGAATCAGTT+TGG | - | chr7.2:27640620-27640639 | MS.gene054826:intron | 45.0% | |
| ATTCCCATGTTGCCTGATGT+TGG | + | chr7.2:27640615-27640634 | None:intergenic | 45.0% | |
| ATTCTCACGGATCCAACGAA+AGG | - | chr7.2:27640744-27640763 | MS.gene054826:CDS | 45.0% | |
| CAGGTGCATTTCGAAACAAC+AGG | - | chr7.2:27641165-27641184 | MS.gene054826:intron | 45.0% | |
| CCGCTCTAGTCACTATTTGA+TGG | + | chr7.2:27640984-27641003 | None:intergenic | 45.0% | |
| CTACTGCTAGCATCAAAGAC+AGG | - | chr7.2:27640061-27640080 | MS.gene054826:intron | 45.0% | |
| CTCATATCATGCCACGTGTA+TGG | - | chr7.2:27639575-27639594 | MS.gene054826:CDS | 45.0% | |
| CTGTCTTTGATGCTAGCAGT+AGG | + | chr7.2:27640063-27640082 | None:intergenic | 45.0% | |
| GACTGTTCATCCAAGTTTCG+GGG | - | chr7.2:27642173-27642192 | MS.gene054826:CDS | 45.0% | |
| GATATATGGAGTGGAGCCAT+CGG | - | chr7.2:27641402-27641421 | MS.gene054826:intron | 45.0% | |
| GATCCGTGGTTAACAAACAC+TGG | - | chr7.2:27641054-27641073 | MS.gene054826:intron | 45.0% | |
| GCATTTATGGCTGCCATGAA+GGG | - | chr7.2:27640642-27640661 | MS.gene054826:intron | 45.0% | |
| GCTAACCTTCCTGAGAACAA+AGG | - | chr7.2:27641979-27641998 | MS.gene054826:intron | 45.0% | |
| GTTTGCCTTTGTTCTCAGGA+AGG | + | chr7.2:27641987-27642006 | None:intergenic | 45.0% | |
| TCCTCATCATCATTGGATGC+TGG | + | chr7.2:27639334-27639353 | None:intergenic | 45.0% | |
| TCGAAGGTCTTGGAACAAGA+CGG | + | chr7.2:27642214-27642233 | None:intergenic | 45.0% | |
| TCTTCCATCATAGCAAGTGC+CGG | + | chr7.2:27640449-27640468 | None:intergenic | 45.0% | |
| TGAAAACATGCAGCCAGTCT+CGG | - | chr7.2:27642242-27642261 | MS.gene054826:CDS | 45.0% | |
| TTCCAACCCAGCCAATACTA+AGG | - | chr7.2:27640839-27640858 | MS.gene054826:CDS | 45.0% | |
| ! | AGCATCCAATGATGATGAGG+AGG | - | chr7.2:27639333-27639352 | MS.gene054826:CDS | 45.0% |
| !! | AGGACATTGGCCTTGAAAGA+AGG | - | chr7.2:27641758-27641777 | MS.gene054826:intron | 45.0% |
| !! | TACCTTAGTATTGGCTGGGT+TGG | + | chr7.2:27640844-27640863 | None:intergenic | 45.0% |
| !!! | TTTTTTAAACAATTTTTTAT+TGG | - | chr7.2:27639886-27639905 | MS.gene054826:intron | 5.0% |
| AACAGGTCCTGAGATATGGG+AGG | - | chr7.2:27641182-27641201 | MS.gene054826:intron | 50.0% | |
| AGAGCCAACATCAGGCAACA+TGG | - | chr7.2:27640608-27640627 | MS.gene054826:intron | 50.0% | |
| CACAGTTGCAGCACTCAGAT+TGG | - | chr7.2:27641957-27641976 | MS.gene054826:intron | 50.0% | |
| CACGGATCCAACGAAAGGAA+TGG | - | chr7.2:27640749-27640768 | MS.gene054826:CDS | 50.0% | |
| CAGCTTCTGTTCGAAGGTCT+TGG | + | chr7.2:27642224-27642243 | None:intergenic | 50.0% | |
| GAGCCAACATCAGGCAACAT+GGG | - | chr7.2:27640609-27640628 | MS.gene054826:intron | 50.0% | |
| GATCCAACGAAAGGAATGGG+AGG | - | chr7.2:27640753-27640772 | MS.gene054826:CDS | 50.0% | |
| GGCATTTATGGCTGCCATGA+AGG | - | chr7.2:27640641-27640660 | MS.gene054826:intron | 50.0% | |
| GGCCTTGAAAGAAGGACTCA+TGG | - | chr7.2:27641766-27641785 | MS.gene054826:intron | 50.0% | |
| GTGCTGAATGGTGGTAAACC+TGG | - | chr7.2:27641433-27641452 | MS.gene054826:intron | 50.0% | |
| GTTCCTCCCATTCCTTTCGT+TGG | + | chr7.2:27640759-27640778 | None:intergenic | 50.0% | |
| ! | GCCAGCATCCAATGATGATG+AGG | - | chr7.2:27639330-27639349 | MS.gene054826:CDS | 50.0% |
| ! | GTGATGGGAATAGGTAGCGG+AGG | - | chr7.2:27641231-27641250 | MS.gene054826:intron | 55.0% |
| !! | CAGACCGGCACTTGCTATGA+TGG | - | chr7.2:27640442-27640461 | MS.gene054826:intron | 55.0% |
| !! | GGGAATAGGTAGCGGAGGCA+CGG | - | chr7.2:27641236-27641255 | MS.gene054826:intron | 60.0% |
| ! | GTAGCGGAGGCACGGTTTCC+GGG | - | chr7.2:27641244-27641263 | MS.gene054826:intron | 65.0% |
| ! | TAGCGGAGGCACGGTTTCCG+GGG | - | chr7.2:27641245-27641264 | MS.gene054826:intron | 65.0% |
| !! | GGTAGCGGAGGCACGGTTTC+CGG | - | chr7.2:27641243-27641262 | MS.gene054826:intron | 65.0% |
| ! | GGAGGCACGGTTTCCGGGGT+TGG | - | chr7.2:27641249-27641268 | MS.gene054826:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.2 | gene | 27639266 | 27642300 | 27639266 | ID=MS.gene054826 |
| chr7.2 | mRNA | 27639266 | 27642300 | 27639266 | ID=MS.gene054826.t1;Parent=MS.gene054826 |
| chr7.2 | exon | 27642103 | 27642300 | 27642103 | ID=MS.gene054826.t1.exon1;Parent=MS.gene054826.t1 |
| chr7.2 | CDS | 27642103 | 27642300 | 27642103 | ID=cds.MS.gene054826.t1;Parent=MS.gene054826.t1 |
| chr7.2 | exon | 27641484 | 27641593 | 27641484 | ID=MS.gene054826.t1.exon2;Parent=MS.gene054826.t1 |
| chr7.2 | CDS | 27641484 | 27641593 | 27641484 | ID=cds.MS.gene054826.t1;Parent=MS.gene054826.t1 |
| chr7.2 | exon | 27641064 | 27641121 | 27641064 | ID=MS.gene054826.t1.exon3;Parent=MS.gene054826.t1 |
| chr7.2 | CDS | 27641064 | 27641121 | 27641064 | ID=cds.MS.gene054826.t1;Parent=MS.gene054826.t1 |
| chr7.2 | exon | 27640706 | 27640969 | 27640706 | ID=MS.gene054826.t1.exon4;Parent=MS.gene054826.t1 |
| chr7.2 | CDS | 27640706 | 27640969 | 27640706 | ID=cds.MS.gene054826.t1;Parent=MS.gene054826.t1 |
| chr7.2 | exon | 27640261 | 27640398 | 27640261 | ID=MS.gene054826.t1.exon5;Parent=MS.gene054826.t1 |
| chr7.2 | CDS | 27640261 | 27640398 | 27640261 | ID=cds.MS.gene054826.t1;Parent=MS.gene054826.t1 |
| chr7.2 | exon | 27640112 | 27640163 | 27640112 | ID=MS.gene054826.t1.exon6;Parent=MS.gene054826.t1 |
| chr7.2 | CDS | 27640112 | 27640163 | 27640112 | ID=cds.MS.gene054826.t1;Parent=MS.gene054826.t1 |
| chr7.2 | exon | 27639934 | 27640013 | 27639934 | ID=MS.gene054826.t1.exon7;Parent=MS.gene054826.t1 |
| chr7.2 | CDS | 27639934 | 27640013 | 27639934 | ID=cds.MS.gene054826.t1;Parent=MS.gene054826.t1 |
| chr7.2 | exon | 27639779 | 27639838 | 27639779 | ID=MS.gene054826.t1.exon8;Parent=MS.gene054826.t1 |
| chr7.2 | CDS | 27639779 | 27639838 | 27639779 | ID=cds.MS.gene054826.t1;Parent=MS.gene054826.t1 |
| chr7.2 | exon | 27639496 | 27639632 | 27639496 | ID=MS.gene054826.t1.exon9;Parent=MS.gene054826.t1 |
| chr7.2 | CDS | 27639496 | 27639632 | 27639496 | ID=cds.MS.gene054826.t1;Parent=MS.gene054826.t1 |
| chr7.2 | exon | 27639266 | 27639392 | 27639266 | ID=MS.gene054826.t1.exon10;Parent=MS.gene054826.t1 |
| chr7.2 | CDS | 27639266 | 27639392 | 27639266 | ID=cds.MS.gene054826.t1;Parent=MS.gene054826.t1 |
| Gene Sequence |
| Protein sequence |
