AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene74896

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene74896.t1 MTR_1g079730 96.452 451 14 1 1 449 1 451 0.0 907
MS.gene74896.t1 MTR_7g116420 72.768 448 107 6 3 448 5 439 0.0 682
MS.gene74896.t1 MTR_8g088510 58.734 395 147 6 55 448 36 415 4.86e-171 486
MS.gene74896.t1 MTR_2g062610 56.250 400 158 8 52 449 42 426 8.97e-167 476
MS.gene74896.t1 MTR_8g069575 53.477 417 162 6 34 449 26 411 5.72e-158 453
MS.gene74896.t1 MTR_5g033650 56.853 394 139 6 56 449 4 366 5.09e-157 449
MS.gene74896.t1 MTR_3g077430 55.639 399 146 8 51 449 98 465 3.73e-156 451
MS.gene74896.t1 MTR_4g105400 56.878 378 133 7 72 449 11 358 6.08e-154 441
MS.gene74896.t1 MTR_2g062610 60.645 310 117 5 142 449 30 336 1.52e-145 419
MS.gene74896.t1 MTR_2g062610 60.645 310 117 5 142 449 37 343 3.90e-145 418
MS.gene74896.t1 MTR_8g069610 47.816 412 177 8 38 449 41 414 4.18e-134 392
MS.gene74896.t1 MTR_8g069600 45.626 423 187 7 36 449 5 393 2.56e-129 379
MS.gene74896.t1 MTR_3g095890 44.394 437 195 11 15 448 42 433 8.89e-125 369
MS.gene74896.t1 MTR_8g069580 44.191 439 185 11 15 449 12 394 1.64e-122 362
MS.gene74896.t1 MTR_8g069720 42.563 437 208 8 15 449 12 407 3.53e-122 362
MS.gene74896.t1 MTR_8g069590 50.162 309 141 5 142 449 9 305 4.47e-113 335
MS.gene74896.t1 MTR_8g069640 38.621 435 224 8 15 448 12 404 1.72e-103 314
MS.gene74896.t1 MTR_6g012620 40.821 414 207 11 50 449 21 410 6.05e-100 305
MS.gene74896.t1 MTR_8g069660 39.952 418 191 10 36 449 39 400 6.46e-98 299
MS.gene74896.t1 MTR_8g069715 41.147 401 193 8 54 449 48 410 8.96e-98 299
MS.gene74896.t1 MTR_3g104070 37.907 430 250 8 24 449 6 422 5.63e-94 290
MS.gene74896.t1 MTR_3g104030 37.900 438 229 10 17 446 9 411 8.51e-91 281
MS.gene74896.t1 MTR_3g104000 38.780 410 219 11 53 449 27 417 6.61e-90 279
MS.gene74896.t1 MTR_3g103980 37.101 407 227 9 53 449 48 435 8.59e-87 272
MS.gene74896.t1 MTR_2g093840 44.923 325 153 10 129 449 58 360 3.19e-86 268
MS.gene74896.t1 MTR_1g016910 39.506 405 233 9 48 449 25 420 1.93e-85 268
MS.gene74896.t1 MTR_8g069695 43.697 238 128 4 214 449 26 259 1.02e-70 224
MS.gene74896.t1 MTR_3g104030 38.580 324 176 7 139 446 31 347 1.33e-69 225
MS.gene74896.t1 MTR_2g073040 42.705 281 126 7 45 324 23 269 2.35e-69 222
MS.gene74896.t1 MTR_2g073020 40.514 311 146 7 15 324 10 282 2.75e-69 222
MS.gene74896.t1 MTR_8g040890 33.036 448 241 13 24 443 2 418 9.04e-61 204
MS.gene74896.t1 MTR_8g040850 32.258 434 244 15 18 445 1 390 8.10e-59 198
MS.gene74896.t1 MTR_5g078580 34.571 350 174 10 56 398 36 337 2.53e-53 183
MS.gene74896.t1 MTR_3g108680 32.021 381 204 14 71 445 55 386 2.08e-48 170
MS.gene74896.t1 MTR_8g104480 32.181 376 198 15 79 443 8 337 1.60e-47 167
MS.gene74896.t1 MTR_5g092260 28.966 435 228 14 22 445 20 384 3.23e-46 164
MS.gene74896.t1 MTR_5g094280 33.837 331 172 12 36 366 2 285 9.68e-45 159
MS.gene74896.t1 MTR_8g069630 51.969 127 59 2 324 449 4 129 2.00e-42 146
MS.gene74896.t1 MTR_2g046390 32.383 386 195 15 70 443 37 368 3.00e-42 154
MS.gene74896.t1 MTR_8g012985 37.500 248 137 10 211 448 2 241 1.43e-40 145
MS.gene74896.t1 MTR_8g069750 43.396 159 81 2 226 377 122 278 1.95e-38 140
MS.gene74896.t1 MTR_2g046300 29.243 383 196 13 70 443 37 353 1.86e-33 129
MS.gene74896.t1 MTR_2g046430 34.583 240 140 10 213 442 4 236 4.86e-33 125
MS.gene74896.t1 MTR_2g046520 34.167 240 141 10 213 442 4 236 6.22e-33 125
MS.gene74896.t1 MTR_5g065260 34.555 191 117 5 212 402 1 183 1.21e-29 115
MS.gene74896.t1 MTR_2g046390 28.125 384 171 14 70 443 37 325 7.97e-25 104
MS.gene74896.t1 MTR_0009s0020 37.681 138 80 4 258 395 18 149 4.61e-23 95.1
MS.gene74896.t1 MTR_7g072230 31.250 176 107 7 276 441 34 205 9.59e-20 87.4
MS.gene74896.t1 MTR_2g073050 53.521 71 32 1 379 449 1 70 3.13e-19 82.0
MS.gene74896.t1 MTR_8g069950 60.000 55 22 0 276 330 58 112 6.90e-18 79.7
MS.gene74896.t1 MTR_8g069665 40.741 108 42 3 73 180 109 194 4.59e-17 80.1
MS.gene74896.t1 MTR_5g065920 53.448 58 23 2 201 258 9 62 5.64e-12 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene74896.t1 AT5G18460 72.596 416 101 1 33 448 27 429 0.0 629
MS.gene74896.t1 AT3G13510 56.177 429 163 12 22 449 15 419 3.21e-170 484
MS.gene74896.t1 AT1G55360 57.317 410 158 8 41 449 29 422 4.02e-170 484
MS.gene74896.t1 AT5G56530 58.228 395 148 7 55 448 41 419 5.74e-168 479
MS.gene74896.t1 AT5G56530 58.228 395 148 7 55 448 41 419 5.74e-168 479
MS.gene74896.t1 AT1G10750 57.286 398 139 5 52 449 101 467 1.81e-163 469
MS.gene74896.t1 AT1G23340 52.740 438 175 6 13 449 3 409 6.33e-163 466
MS.gene74896.t1 AT1G23340 52.740 438 175 6 13 449 3 409 6.33e-163 466
MS.gene74896.t1 AT2G44210 50.926 432 189 8 20 449 5 415 2.01e-158 454
MS.gene74896.t1 AT1G70550 55.528 398 146 7 52 449 99 465 2.53e-157 453
MS.gene74896.t1 AT5G50150 52.913 412 163 6 39 449 39 420 2.68e-157 452
MS.gene74896.t1 AT2G44210 47.619 462 189 9 20 449 5 445 3.97e-152 439
MS.gene74896.t1 AT2G44220 44.884 430 202 9 22 449 7 403 6.17e-133 389
MS.gene74896.t1 AT3G48230 48.346 393 170 7 60 449 11 373 2.19e-129 379
MS.gene74896.t1 AT2G44240 44.573 433 204 10 19 449 4 402 1.50e-126 373
MS.gene74896.t1 AT2G17750 42.299 435 208 9 17 448 1 395 3.69e-122 361
MS.gene74896.t1 AT2G19360 43.990 416 199 5 49 448 28 425 3.03e-117 350
MS.gene74896.t1 AT5G19170 41.353 399 197 5 48 443 1 365 2.24e-109 328
MS.gene74896.t1 AT2G44250 44.059 404 198 11 48 448 30 408 1.02e-103 315
MS.gene74896.t1 AT1G23340 48.882 313 128 6 13 324 3 284 5.54e-95 288
MS.gene74896.t1 AT2G44250 45.806 310 159 8 142 448 22 325 1.96e-83 259
MS.gene74896.t1 AT5G25950 37.831 415 211 11 56 449 44 432 3.35e-81 258
MS.gene74896.t1 AT2G20170 36.136 440 226 16 13 443 3 396 2.01e-78 249
MS.gene74896.t1 AT2G20170 36.136 440 226 16 13 443 3 396 2.01e-78 249
MS.gene74896.t1 AT5G25960 37.688 398 179 10 56 449 25 357 5.77e-72 231
MS.gene74896.t1 AT4G23390 36.829 391 206 13 60 443 41 397 4.39e-70 228
MS.gene74896.t1 AT4G23370 34.606 393 217 13 60 443 40 401 9.58e-70 227
MS.gene74896.t1 AT2G20170 33.636 440 220 16 13 443 3 379 6.88e-68 221
MS.gene74896.t1 AT4G23355 32.668 401 230 12 49 443 32 398 6.67e-62 206
MS.gene74896.t1 AT4G23365 31.463 410 237 14 43 443 24 398 1.97e-60 202
MS.gene74896.t1 AT4G23360 30.660 424 223 13 43 443 24 399 1.38e-59 200
MS.gene74896.t1 AT4G23350 30.073 409 246 12 43 443 24 400 2.72e-59 199
MS.gene74896.t1 AT4G23380 30.115 435 251 15 17 443 9 398 3.27e-59 199
MS.gene74896.t1 AT1G70550 47.321 224 87 7 52 275 99 291 1.32e-58 194
MS.gene74896.t1 AT1G10750 46.445 211 82 5 52 262 101 280 5.35e-50 174
MS.gene74896.t1 AT4G15050 30.918 414 235 15 41 444 23 395 2.64e-47 167
MS.gene74896.t1 AT1G10190 30.508 413 238 14 41 444 23 395 6.25e-47 167
MS.gene74896.t1 AT2G35250 32.976 373 189 14 77 445 24 339 5.11e-46 163
MS.gene74896.t1 AT4G17505 28.796 382 191 9 68 446 18 321 1.42e-44 158
MS.gene74896.t1 AT2G27320 34.043 329 149 12 79 400 30 297 8.76e-43 154
MS.gene74896.t1 AT5G46820 30.287 383 214 14 71 443 8 347 2.16e-40 148
MS.gene74896.t1 AT4G15053 27.918 437 264 14 18 444 7 402 8.45e-40 147
MS.gene74896.t1 AT5G46810 29.101 378 215 16 80 443 11 349 2.76e-39 145
MS.gene74896.t1 AT5G46200 26.667 435 250 17 48 443 1 405 7.64e-39 145
MS.gene74896.t1 AT5G25410 28.535 389 216 12 64 443 28 363 8.55e-38 141
MS.gene74896.t1 AT2G24950 27.880 434 254 18 19 444 28 410 8.03e-37 140
MS.gene74896.t1 AT4G10220 28.409 440 255 18 11 443 12 398 2.36e-35 135
MS.gene74896.t1 AT5G05030 28.645 391 221 14 62 445 20 359 6.94e-35 133
MS.gene74896.t1 AT5G60380 27.273 385 224 14 67 443 31 367 1.47e-34 132
MS.gene74896.t1 AT4G23373 31.119 286 128 9 17 298 7 227 1.02e-33 129
MS.gene74896.t1 AT4G17860 28.684 380 198 16 80 443 29 351 8.58e-32 125
MS.gene74896.t1 AT4G10210 27.934 426 253 18 14 430 8 388 3.37e-30 121
MS.gene74896.t1 AT5G11660 29.268 328 201 11 124 445 2 304 5.23e-29 116
MS.gene74896.t1 AT2G03930 53.261 92 43 0 199 290 42 133 1.07e-28 111
MS.gene74896.t1 AT2G38255 34.894 235 100 7 80 313 14 196 2.97e-28 111
MS.gene74896.t1 AT4G23080 26.932 453 253 19 12 445 13 406 3.64e-26 110
MS.gene74896.t1 AT5G36680 28.710 310 182 14 145 443 46 327 1.88e-24 103
MS.gene74896.t1 AT5G36770 28.710 310 182 14 145 443 46 327 1.88e-24 103
MS.gene74896.t1 AT5G25415 30.531 226 136 7 231 445 117 332 1.45e-22 98.6
MS.gene74896.t1 AT5G04937 27.876 226 128 9 229 445 1 200 5.81e-17 79.7
MS.gene74896.t1 AT5G37520 31.034 232 118 12 218 443 2 197 3.31e-16 77.4

Find 135 sgRNAs with CRISPR-Local

Find 266 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGTTCAGTCTCTCCCAAATT+TGG 0.146471 1.1:+59237264 MS.gene74896:CDS
AACCTGAGAGGACCCAAATT+TGG 0.248097 1.1:-59237277 None:intergenic
GTCTATACTTTGTGTAGTTT+TGG 0.265572 1.1:-59234849 None:intergenic
CGAAGTGGCCGGAACCCATC+TGG 0.283333 1.1:-59238788 None:intergenic
GCAAAATCATTGTATGATTA+TGG 0.283650 1.1:+59235599 MS.gene74896:CDS
CACTTCGCCGAGGATGGTTT+TGG 0.299071 1.1:+59238804 MS.gene74896:CDS
GGGAATTGGTGGATGAGTTT+TGG 0.323810 1.1:+59238642 MS.gene74896:CDS
CGTCCAATACGTGAATAATC+TGG 0.340282 1.1:-59237703 None:intergenic
ACCTGAGAGGACCCAAATTT+GGG 0.351743 1.1:-59237276 None:intergenic
ACCAATAGTAAAATAGCTAT+TGG 0.352594 1.1:+59238275 MS.gene74896:CDS
TGGGGCACATACTTCTATTA+TGG 0.363396 1.1:+59238954 MS.gene74896:CDS
ACCTCCACCCAGATGGGTTC+CGG 0.364143 1.1:+59238780 MS.gene74896:CDS
ATGACATTTCAATCCTCATT+TGG 0.370364 1.1:+59238339 MS.gene74896:CDS
CAAAAGCATCAATAAGTGTA+TGG 0.377630 1.1:+59237216 MS.gene74896:CDS
ATAGACAAATTAGTAGCTTA+AGG 0.377646 1.1:+59234866 MS.gene74896:CDS
TACTTCTATTATGGTGGGCC+TGG 0.378607 1.1:+59238963 MS.gene74896:CDS
TTGGAAAAGCAAGCTACTTT+CGG 0.382754 1.1:+59238823 MS.gene74896:CDS
AGTACCTCTTTGTAGAAGTA+TGG 0.387381 1.1:-59234806 None:intergenic
CAGGTCAGTCCGGAGCTTTA+TGG 0.392752 1.1:+59237669 MS.gene74896:intron
GTTCAGTCTCTCCCAAATTT+GGG 0.393611 1.1:+59237265 MS.gene74896:CDS
TCGTTCATAACTTCAATAGA+TGG 0.395107 1.1:-59237242 None:intergenic
CAAAAGAAAACAACTAGCTT+TGG 0.402387 1.1:+59235148 MS.gene74896:CDS
TCCCAAATTTGGGTCCTCTC+AGG 0.406346 1.1:+59237275 MS.gene74896:CDS
TGGCAAATGTGGCATCGAAA+TGG 0.410450 1.1:+59235515 MS.gene74896:CDS
AAGAAGATGCAAAGTGGAAC+AGG 0.412758 1.1:-59234764 None:intergenic
TGTTACAATCTTCTTTGTGC+TGG 0.413077 1.1:+59238242 MS.gene74896:CDS
GACCCAGATTATTCACGTAT+TGG 0.425155 1.1:+59237700 MS.gene74896:CDS
AATGCCAAGAGGTATGAAAA+TGG 0.430413 1.1:+59235412 MS.gene74896:CDS
TCTCCTGTCTCTGCTTATGC+TGG 0.431089 1.1:+59238308 MS.gene74896:CDS
TGAGGATTGAAATGTCATAT+TGG 0.432408 1.1:-59238334 None:intergenic
CGTACAGGAACCGTTCCCTT+TGG 0.434510 1.1:-59235548 None:intergenic
ATCCACCAATTCCCTACTCT+TGG 0.440581 1.1:-59238633 None:intergenic
AGGATCCAAGAGTAGGGAAT+TGG 0.442405 1.1:+59238628 MS.gene74896:intron
ATAAGCAGAGACAGGAGAAA+TGG 0.442555 1.1:-59238303 None:intergenic
TCACGCCACCATGGTAGAAT+GGG 0.442905 1.1:+59238719 MS.gene74896:CDS
TTCTACCATGGTGGCGTGAT+CGG 0.445099 1.1:-59238715 None:intergenic
GGCAAATGTGGCATCGAAAT+GGG 0.448080 1.1:+59235516 MS.gene74896:CDS
CAATCTATAAGATCTCCATC+TGG 0.449906 1.1:-59235119 None:intergenic
ATACCTCTTGGCATTTCACT+TGG 0.458197 1.1:-59235404 None:intergenic
AAGCTCCTATAGCAACGAAT+GGG 0.458230 1.1:+59238935 MS.gene74896:CDS
ATCACGCCACCATGGTAGAA+TGG 0.462673 1.1:+59238718 MS.gene74896:CDS
TTCTACTAGTCAGGTCAGTC+CGG 0.463381 1.1:+59237659 MS.gene74896:intron
TTAGTAGCTTAAGGCTTGAA+AGG 0.465638 1.1:+59234875 MS.gene74896:CDS
AAATATTGACCTTCCAAATG+AGG 0.470009 1.1:-59238352 None:intergenic
CTTTCGGAACCTTGAGATTG+TGG 0.471570 1.1:+59238839 MS.gene74896:CDS
GGAGGTGGGAAAAGGAAAAG+AGG 0.474144 1.1:+59235475 MS.gene74896:CDS
GTCCTCTCAGGTTCCTTCGA+TGG 0.475009 1.1:+59237287 MS.gene74896:CDS
TACTAAGACTAATGTGGAGG+TGG 0.477306 1.1:+59235460 MS.gene74896:CDS
TCCGGCCACTTCGCCGAGGA+TGG 0.479065 1.1:+59238798 MS.gene74896:CDS
CATTTCAATCCTCATTTGGA+AGG 0.480438 1.1:+59238343 MS.gene74896:CDS
ACTAATGTGGAGGTGGGAAA+AGG 0.480517 1.1:+59235467 MS.gene74896:CDS
TTTGGCGACAACACATTGGT+AGG 0.484234 1.1:+59238660 MS.gene74896:CDS
AATAAATAACATTACCTCAA+TGG 0.484489 1.1:-59234941 None:intergenic
ATTACCTCAATGGTCAGAAC+AGG 0.496747 1.1:-59234931 None:intergenic
AGTGACTCTTATCAAGCAAC+CGG 0.497909 1.1:+59238218 MS.gene74896:CDS
ACAACACATTGGTAGGGTAT+TGG 0.498809 1.1:+59238667 MS.gene74896:CDS
GATCTTAACAGCATTGAAGC+TGG 0.501018 1.1:+59237314 MS.gene74896:CDS
ATCTTGTGATTCTTTAAAAG+TGG 0.501598 1.1:-59235176 None:intergenic
CAGCATTGAAGCTGGATGGC+AGG 0.504238 1.1:+59237322 MS.gene74896:CDS
AAGTGTGTGAATAGCTCTGC+TGG 0.506211 1.1:-59238690 None:intergenic
ACCATCCTCGGCGAAGTGGC+CGG 0.510448 1.1:-59238799 None:intergenic
GAGGTGGGAAAAGGAAAAGA+GGG 0.513545 1.1:+59235476 MS.gene74896:CDS
GTGGCGAGGTGGTGAACTCA+CGG 0.514251 1.1:+59238742 MS.gene74896:CDS
ATCCAAGAGTAGGGAATTGG+TGG 0.515237 1.1:+59238631 MS.gene74896:CDS
TGTGCCCCATTCGTTGCTAT+AGG 0.517107 1.1:-59238940 None:intergenic
ATGAATTAGGATCCAAGAGT+AGG 0.520389 1.1:+59238621 MS.gene74896:intron
GCCGGAACCCATCTGGGTGG+AGG 0.520638 1.1:-59238781 None:intergenic
TTTAAAGAATCACAAGATCC+AGG 0.521387 1.1:+59235181 MS.gene74896:CDS
GAAGTGGCCGGAACCCATCT+GGG 0.521952 1.1:-59238787 None:intergenic
GCTTCAATGCTGTTAAGATC+AGG 0.526831 1.1:-59237311 None:intergenic
CCGACATACCTCCACCCAGA+TGG 0.537784 1.1:+59238773 MS.gene74896:CDS
GATGCACCTGATGTATTCTC+TGG 0.539147 1.1:+59235659 MS.gene74896:CDS
ACTTCTATTATGGTGGGCCT+GGG 0.541635 1.1:+59238964 MS.gene74896:CDS
CCATTGCCAGAGAATACATC+AGG 0.546685 1.1:-59235665 None:intergenic
GAACACAAATTCCACTCTCT+CGG 0.547199 1.1:+59235630 MS.gene74896:CDS
TTGCCAGCATAAGCAGAGAC+AGG 0.550192 1.1:-59238311 None:intergenic
GAAACAACGCATGGCAAATG+TGG 0.550895 1.1:+59235504 MS.gene74896:CDS
AATGGGACAAGGTGTCCAAA+GGG 0.551200 1.1:+59235533 MS.gene74896:CDS
GGCACATACTTCTATTATGG+TGG 0.551475 1.1:+59238957 MS.gene74896:CDS
CTGTTGTCACCATAAAGCTC+CGG 0.551825 1.1:-59237678 None:intergenic
CATGGTAGAATGGGGTGGCG+AGG 0.554975 1.1:+59238728 MS.gene74896:CDS
TGAATTAGGATCCAAGAGTA+GGG 0.555817 1.1:+59238622 MS.gene74896:intron
AGTGCAAAGCATCTCAACCT+TGG 0.556736 1.1:+59238884 MS.gene74896:CDS
AGGTGGGAAAAGGAAAAGAG+GGG 0.557263 1.1:+59235477 MS.gene74896:CDS
GCATCACTGCTCCGAGAGAG+TGG 0.558421 1.1:-59235641 None:intergenic
GCACATACTTCTATTATGGT+GGG 0.558944 1.1:+59238958 MS.gene74896:CDS
AAAAGCATCAATAAGTGTAT+GGG 0.559353 1.1:+59237217 MS.gene74896:CDS
GTCCAATACGTGAATAATCT+GGG 0.562121 1.1:-59237702 None:intergenic
CGACATACCTCCACCCAGAT+GGG 0.565648 1.1:+59238774 MS.gene74896:CDS
AAAGCTCCTATAGCAACGAA+TGG 0.568443 1.1:+59238934 MS.gene74896:CDS
AAATGGGACAAGGTGTCCAA+AGG 0.571908 1.1:+59235532 MS.gene74896:CDS
TTGGCGACAACACATTGGTA+GGG 0.577351 1.1:+59238661 MS.gene74896:CDS
CCATCTGGGTGGAGGTATGT+CGG 0.579887 1.1:-59238773 None:intergenic
TATTAATTTCAGAGCCCAGA+TGG 0.582916 1.1:+59235104 MS.gene74896:intron
GGTGGGAAAAGGAAAAGAGG+GGG 0.588195 1.1:+59235478 MS.gene74896:CDS
CAGATTATTCACGTATTGGA+CGG 0.590845 1.1:+59237704 MS.gene74896:CDS
CAGCATGCGATCGCGTACAC+AGG 0.591359 1.1:+59237170 MS.gene74896:intron
ACCTCAATGGTCAGAACAGG+AGG 0.593688 1.1:-59234928 None:intergenic
TGTACTGTACTCCTTCGTAC+AGG 0.594034 1.1:-59235563 None:intergenic
CAGAACAAGAAGATGCAAAG+TGG 0.594463 1.1:-59234770 None:intergenic
ATTGCCATACTTCTACAAAG+AGG 0.594980 1.1:+59234802 MS.gene74896:CDS
TCTTGTGATTCTTTAAAAGT+GGG 0.595220 1.1:-59235175 None:intergenic
GGTAGAATGGGGTGGCGAGG+TGG 0.597596 1.1:+59238731 MS.gene74896:CDS
GTGGTGAACTCACGGACCGA+CGG 0.598866 1.1:+59238750 MS.gene74896:CDS
ACTAAGACTAATGTGGAGGT+GGG 0.601038 1.1:+59235461 MS.gene74896:CDS
GGTGGAGGTATGTCGGCCGT+CGG 0.606298 1.1:-59238766 None:intergenic
CCTGATGTATTCTCTGGCAA+TGG 0.606931 1.1:+59235665 MS.gene74896:CDS
ACAAAGAAGATTGTAACAGC+CGG 0.608490 1.1:-59238237 None:intergenic
AATCTATAAGATCTCCATCT+GGG 0.608567 1.1:-59235118 None:intergenic
CAAAACCATCCTCGGCGAAG+TGG 0.611417 1.1:-59238803 None:intergenic
TATCAATGTCCACAATCTCA+AGG 0.616472 1.1:-59238848 None:intergenic
GACAAGGTGTCCAAAGGGAA+CGG 0.617225 1.1:+59235538 MS.gene74896:CDS
GGATCATCACAAGAGATCTA+CGG 0.619381 1.1:+59237191 MS.gene74896:CDS
TTAACAGCATTGAAGCTGGA+TGG 0.619858 1.1:+59237318 MS.gene74896:CDS
TGTGGCATCGAAATGGGACA+AGG 0.622901 1.1:+59235522 MS.gene74896:CDS
GCCACCATGGTAGAATGGGG+TGG 0.631388 1.1:+59238723 MS.gene74896:CDS
GGACACTTAGGATTATTCCC+AGG 0.633517 1.1:-59238981 None:intergenic
CTTAGCCGATCACGCCACCA+TGG 0.640049 1.1:+59238710 MS.gene74896:CDS
GTTAAGATCAGGACCATCGA+AGG 0.641054 1.1:-59237300 None:intergenic
ATTCTCTGGCAATGGTCATG+AGG 0.641144 1.1:+59235673 MS.gene74896:CDS
TAATATTACTAAGACTAATG+TGG 0.644042 1.1:+59235454 MS.gene74896:CDS
CTCGCCACCCCATTCTACCA+TGG 0.644337 1.1:-59238727 None:intergenic
GCCTCCTGTTCTGACCATTG+AGG 0.647183 1.1:+59234927 MS.gene74896:CDS
AGCTCCTATAGCAACGAATG+GGG 0.667470 1.1:+59238936 MS.gene74896:CDS
GCCACCCCATTCTACCATGG+TGG 0.673498 1.1:-59238724 None:intergenic
AGGGAACGGTTCCTGTACGA+AGG 0.674300 1.1:+59235552 MS.gene74896:CDS
TATTACTAAGACTAATGTGG+AGG 0.677297 1.1:+59235457 MS.gene74896:CDS
CACGCCACCATGGTAGAATG+GGG 0.679393 1.1:+59238720 MS.gene74896:CDS
GTGGCCGGAACCCATCTGGG+TGG 0.683187 1.1:-59238784 None:intergenic
GACCATCGAAGGAACCTGAG+AGG 0.686274 1.1:-59237289 None:intergenic
ACTTCTACAAAGAGGTACTG+TGG 0.691972 1.1:+59234810 MS.gene74896:CDS
GGGTTCCGGCCACTTCGCCG+AGG 0.694192 1.1:+59238794 MS.gene74896:CDS
GCGCCAAGTGAAATGCCAAG+AGG 0.712044 1.1:+59235401 MS.gene74896:CDS
ATATTGTTGAGAGAAAGAGA+AGG 0.756336 1.1:+59234737 MS.gene74896:CDS
AAAATGGAGAGAGATGACAA+TGG 0.770347 1.1:+59235428 MS.gene74896:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAATTATTATTTATTAAAA+CGG + chr1.1:59238413-59238432 MS.gene74896:intron 0.0%
!! AAAAAAATTGCATAAATTAA+AGG + chr1.1:59238565-59238584 MS.gene74896:intron 10.0%
!! AAAAATTTATTAAAACGATT+CGG - chr1.1:59236839-59236858 None:intergenic 10.0%
!! ATTTATTTGACTAAAAAATT+TGG + chr1.1:59237818-59237837 MS.gene74896:intron 10.0%
!! TAAAATAGTATAAAATTTGA+TGG + chr1.1:59236573-59236592 MS.gene74896:intron 10.0%
!! TACAAATTCATTTAAAAAAA+AGG + chr1.1:59238383-59238402 MS.gene74896:intron 10.0%
!! TATAGATAAACAAAAAAAAA+GGG - chr1.1:59235050-59235069 None:intergenic 10.0%
!! TCAATTATTTGATATTTATT+TGG - chr1.1:59236030-59236049 None:intergenic 10.0%
!! TTATAGATAAACAAAAAAAA+AGG - chr1.1:59235051-59235070 None:intergenic 10.0%
!!! ACTAATTTTATTTAATGAAA+TGG + chr1.1:59237618-59237637 MS.gene74896:intron 10.0%
!!! ATTAAATTACTAGAAATTTT+AGG + chr1.1:59236342-59236361 MS.gene74896:intron 10.0%
!!! TAGTAATTTATTATTTCTAA+TGG + chr1.1:59236984-59237003 MS.gene74896:intron 10.0%
!!! TATTTTTAAAATTACAGTTT+TGG + chr1.1:59236163-59236182 MS.gene74896:intron 10.0%
!!! TTATAAAAAGTAAACAATTT+TGG - chr1.1:59238541-59238560 None:intergenic 10.0%
!! AAAAAACTAAAACATGTAAA+AGG + chr1.1:59236218-59236237 MS.gene74896:intron 15.0%
!! ACTTGAAGTTTAATTAATTA+AGG - chr1.1:59236680-59236699 None:intergenic 15.0%
!! ATAATCAAAGTATATGATTT+GGG - chr1.1:59237889-59237908 None:intergenic 15.0%
!! ATTTCAATCTAGATATATTA+TGG + chr1.1:59235739-59235758 MS.gene74896:intron 15.0%
!! TGTATATTATAATATAGTAC+TGG + chr1.1:59237448-59237467 MS.gene74896:intron 15.0%
!! TTCATTTCTAAATAAAGTTT+AGG - chr1.1:59235883-59235902 None:intergenic 15.0%
!! TTTAACATGTCTTTATAAAA+TGG + chr1.1:59235282-59235301 MS.gene74896:intron 15.0%
!!! AAAAACTAAAAAAGAGTTTT+TGG - chr1.1:59236109-59236128 None:intergenic 15.0%
!!! AAAACTAAAAAAGAGTTTTT+GGG - chr1.1:59236108-59236127 None:intergenic 15.0%
!!! ATTAATTATCTTTTTTTGGT+TGG + chr1.1:59235078-59235097 MS.gene74896:intron 15.0%
!!! ATTTAATCCTTTATTTCTTT+TGG - chr1.1:59236329-59236348 None:intergenic 15.0%
!!! ATTTTTTCCAAAAGAAATAA+AGG + chr1.1:59236319-59236338 MS.gene74896:intron 15.0%
!!! GTTTTGAATTTTTTAGTTTT+GGG + chr1.1:59236191-59236210 MS.gene74896:intron 15.0%
!!! TAGTTTTTATAGTGTTTATT+GGG + chr1.1:59237775-59237794 MS.gene74896:intron 15.0%
!!! TATGGGTTAATATATAATTA+GGG + chr1.1:59235795-59235814 MS.gene74896:intron 15.0%
!!! TGTTTTGAATTTTTTAGTTT+TGG + chr1.1:59236190-59236209 MS.gene74896:intron 15.0%
!!! TTAGTTTTTATAGTGTTTAT+TGG + chr1.1:59237774-59237793 MS.gene74896:intron 15.0%
!!! TTTCAGATATTTTTTGTATA+TGG + chr1.1:59237975-59237994 MS.gene74896:intron 15.0%
!!! TTTTGAATTTTTTAGTTTTG+GGG + chr1.1:59236192-59236211 MS.gene74896:intron 15.0%
!!! TTTTTAAATGAATTTGTATG+TGG - chr1.1:59238381-59238400 None:intergenic 15.0%
!! AAACAAAAACTATTTCAAAC+AGG + chr1.1:59236283-59236302 MS.gene74896:intron 20.0%
!! AATAAATAACATTACCTCAA+TGG - chr1.1:59234944-59234963 None:intergenic 20.0%
!! ATATTAGTTATTAGCAAAGT+TGG + chr1.1:59235969-59235988 MS.gene74896:intron 20.0%
!! ATATTATAATATACACTGTC+AGG - chr1.1:59237443-59237462 None:intergenic 20.0%
!! ATCTTACATAGTTGTTTATT+TGG + chr1.1:59238187-59238206 MS.gene74896:intron 20.0%
!! ATGATCTTACTATAATTACA+TGG + chr1.1:59235701-59235720 MS.gene74896:intron 20.0%
!! CACATTATATGAAACATTAA+TGG - chr1.1:59234968-59234987 None:intergenic 20.0%
!! GATAATCAAAGTATATGATT+TGG - chr1.1:59237890-59237909 None:intergenic 20.0%
!! TAATATTACTAAGACTAATG+TGG + chr1.1:59235454-59235473 MS.gene74896:CDS 20.0%
!! TAATTAACACATGAAATGTT+CGG - chr1.1:59237535-59237554 None:intergenic 20.0%
!! TCTAAATCTTTAATGTCATA+TGG - chr1.1:59236521-59236540 None:intergenic 20.0%
!! TTAGATTATATGTGATACTT+AGG + chr1.1:59237552-59237571 MS.gene74896:intron 20.0%
!! TTCATATAATGTGTTTATAG+TGG + chr1.1:59234975-59234994 MS.gene74896:intron 20.0%
!!! AATACATGAATTTTGTAAGT+TGG - chr1.1:59237411-59237430 None:intergenic 20.0%
!!! AGTTTTTATAGTGTTTATTG+GGG + chr1.1:59237776-59237795 MS.gene74896:intron 20.0%
!!! CGGTTAGTTTATAAATTATA+AGG + chr1.1:59235945-59235964 MS.gene74896:intron 20.0%
!!! CTATGGGTTAATATATAATT+AGG + chr1.1:59235794-59235813 MS.gene74896:intron 20.0%
!!! GAAGACTTTTTTTTTTTTTG+TGG + chr1.1:59237009-59237028 MS.gene74896:intron 20.0%
!!! TACTTTGATTATCTTTTTTG+AGG + chr1.1:59237897-59237916 MS.gene74896:intron 20.0%
! AAATTGGAATGATAGAAAAG+AGG + chr1.1:59237929-59237948 MS.gene74896:intron 25.0%
! AATTGGAATGATAGAAAAGA+GGG + chr1.1:59237930-59237949 MS.gene74896:intron 25.0%
! ACCAATAGTAAAATAGCTAT+TGG + chr1.1:59238275-59238294 MS.gene74896:CDS 25.0%
! ACTTAGGAAATTTGAATGTT+AGG + chr1.1:59238452-59238471 MS.gene74896:intron 25.0%
! ATAACTAAATCATGAATGCA+AGG + chr1.1:59236548-59236567 MS.gene74896:intron 25.0%
! ATAGACAAATTAGTAGCTTA+AGG + chr1.1:59234866-59234885 MS.gene74896:CDS 25.0%
! CTTAGGAAATTTGAATGTTA+GGG + chr1.1:59238453-59238472 MS.gene74896:intron 25.0%
! GATAAACAAAAAAAAAGGGA+AGG - chr1.1:59235046-59235065 None:intergenic 25.0%
! GCAAAATCATTGTATGATTA+TGG + chr1.1:59235599-59235618 MS.gene74896:CDS 25.0%
! TAACTAAATCATGAATGCAA+GGG + chr1.1:59236549-59236568 MS.gene74896:intron 25.0%
! TGGAAAAAATGTAAGACTTA+GGG - chr1.1:59236309-59236328 None:intergenic 25.0%
! TGTTGTTGTGAATATGAATT+AGG + chr1.1:59238608-59238627 MS.gene74896:intron 25.0%
! TTGGAAAAAATGTAAGACTT+AGG - chr1.1:59236310-59236329 None:intergenic 25.0%
!! ATCTTGTGATTCTTTAAAAG+TGG - chr1.1:59235179-59235198 None:intergenic 25.0%
!! CACAAATAGTTAGTTTACTT+AGG + chr1.1:59238436-59238455 MS.gene74896:intron 25.0%
!! GTTAGTAGTAATGTTAGTTT+CGG + chr1.1:59238011-59238030 MS.gene74896:intron 25.0%
!! TCTTGTGATTCTTTAAAAGT+GGG - chr1.1:59235178-59235197 None:intergenic 25.0%
!! TTAGTAGTAATGTTAGTTTC+GGG + chr1.1:59238012-59238031 MS.gene74896:intron 25.0%
!!! AAAAGCATCAATAAGTGTAT+GGG + chr1.1:59237217-59237236 MS.gene74896:CDS 25.0%
!!! AAACATTTATTTTGTGTGCA+TGG - chr1.1:59235016-59235035 None:intergenic 25.0%
!!! ATGGACTTGTTAAATAAAGA+AGG + chr1.1:59235301-59235320 MS.gene74896:intron 25.0%
!!! GACTTTTTTTTTTTTTGTGG+TGG + chr1.1:59237012-59237031 MS.gene74896:intron 25.0%
!!! GCTAGCTAGATTTTTTTTTT+GGG - chr1.1:59236640-59236659 None:intergenic 25.0%
!!! TCCAATAGCTATTTTACTAT+TGG - chr1.1:59238279-59238298 None:intergenic 25.0%
!!! TGCTAGCTAGATTTTTTTTT+TGG - chr1.1:59236641-59236660 None:intergenic 25.0%
!!! TTGATTATCTTTTTTGAGGA+GGG + chr1.1:59237901-59237920 MS.gene74896:intron 25.0%
!!! TTTGATTATCTTTTTTGAGG+AGG + chr1.1:59237900-59237919 MS.gene74896:intron 25.0%
AAACCTAATTAATTCCGCAT+AGG - chr1.1:59238101-59238120 None:intergenic 30.0%
AAATATTGACCTTCCAAATG+AGG - chr1.1:59238355-59238374 None:intergenic 30.0%
AACACCTAATATCACACTAA+TGG - chr1.1:59235849-59235868 None:intergenic 30.0%
AATCTATAAGATCTCCATCT+GGG - chr1.1:59235121-59235140 None:intergenic 30.0%
AGAAATGAAGAGAAGAAATG+TGG + chr1.1:59235894-59235913 MS.gene74896:intron 30.0%
ATATTGTTGAGAGAAAGAGA+AGG + chr1.1:59234737-59234756 MS.gene74896:CDS 30.0%
ATGACATTTCAATCCTCATT+TGG + chr1.1:59238339-59238358 MS.gene74896:CDS 30.0%
ATGACCATTAGTGTGATATT+AGG + chr1.1:59235842-59235861 MS.gene74896:intron 30.0%
GACAATGCATAAAATATGCA+AGG - chr1.1:59237057-59237076 None:intergenic 30.0%
GATTGGATAATGACTTCTAT+GGG + chr1.1:59235778-59235797 MS.gene74896:intron 30.0%
TATTACTAAGACTAATGTGG+AGG + chr1.1:59235457-59235476 MS.gene74896:CDS 30.0%
TCGTTCATAACTTCAATAGA+TGG - chr1.1:59237245-59237264 None:intergenic 30.0%
TGAGGATTGAAATGTCATAT+TGG - chr1.1:59238337-59238356 None:intergenic 30.0%
TTATGGAAAATAATGCTACG+TGG + chr1.1:59235756-59235775 MS.gene74896:intron 30.0%
TTGAAATACTAGAAGTCAGA+AGG - chr1.1:59237352-59237371 None:intergenic 30.0%
TTTAAAGAATCACAAGATCC+AGG + chr1.1:59235181-59235200 MS.gene74896:CDS 30.0%
! ACAATTTGTATTTTCAGCCA+AGG - chr1.1:59238904-59238923 None:intergenic 30.0%
! ATTTGGCCTGATAATTTTTG+TGG - chr1.1:59237845-59237864 None:intergenic 30.0%
! CAAAAGAAAACAACTAGCTT+TGG + chr1.1:59235148-59235167 MS.gene74896:CDS 30.0%
! GTCTATACTTTGTGTAGTTT+TGG - chr1.1:59234852-59234871 None:intergenic 30.0%
! TAGTAGTAATGTTAGTTTCG+GGG + chr1.1:59238013-59238032 MS.gene74896:intron 30.0%
! TATAGACACTCATTTTCAGT+TGG + chr1.1:59237480-59237499 MS.gene74896:intron 30.0%
! TTTGGCCTGATAATTTTTGT+GGG - chr1.1:59237844-59237863 None:intergenic 30.0%
! TTTTATAGTGTTTATTGGGG+TGG + chr1.1:59237779-59237798 MS.gene74896:intron 30.0%
!! AAGCTAGTTGTTTTCTTTTG+TGG - chr1.1:59235148-59235167 None:intergenic 30.0%
!! CAAAAGCATCAATAAGTGTA+TGG + chr1.1:59237216-59237235 MS.gene74896:CDS 30.0%
!!! TGATTATCTTTTTTGAGGAG+GGG + chr1.1:59237902-59237921 MS.gene74896:intron 30.0%
!!! TTTTTTTTTTTTGTGGTGGC+CGG + chr1.1:59237016-59237035 MS.gene74896:intron 30.0%
AAAATGGAGAGAGATGACAA+TGG + chr1.1:59235428-59235447 MS.gene74896:CDS 35.0%
ACAAAGAAGATTGTAACAGC+CGG - chr1.1:59238240-59238259 None:intergenic 35.0%
AGTACCTCTTTGTAGAAGTA+TGG - chr1.1:59234809-59234828 None:intergenic 35.0%
AGTAGAATAAGCAAAGCTTC+AGG - chr1.1:59237646-59237665 None:intergenic 35.0%
ATGAATTAGGATCCAAGAGT+AGG + chr1.1:59238621-59238640 MS.gene74896:intron 35.0%
ATTGCCATACTTCTACAAAG+AGG + chr1.1:59234802-59234821 MS.gene74896:CDS 35.0%
CAATCTATAAGATCTCCATC+TGG - chr1.1:59235122-59235141 None:intergenic 35.0%
CAGATTATTCACGTATTGGA+CGG + chr1.1:59237704-59237723 MS.gene74896:CDS 35.0%
CATAAAATATGCAAGGTTCG+AGG - chr1.1:59237050-59237069 None:intergenic 35.0%
CATTTCAATCCTCATTTGGA+AGG + chr1.1:59238343-59238362 MS.gene74896:CDS 35.0%
CTACCTATGCGGAATTAATT+AGG + chr1.1:59238095-59238114 MS.gene74896:intron 35.0%
CTTTGCTTATTCTACTAGTC+AGG + chr1.1:59237650-59237669 MS.gene74896:intron 35.0%
GAAAATAATGCTACGTGGAT+TGG + chr1.1:59235761-59235780 MS.gene74896:intron 35.0%
GAAACGTTGAATGAGTTTGA+AGG - chr1.1:59238058-59238077 None:intergenic 35.0%
GAGTGTATATCAAACAGTTG+AGG - chr1.1:59236484-59236503 None:intergenic 35.0%
GCACATACTTCTATTATGGT+GGG + chr1.1:59238958-59238977 MS.gene74896:CDS 35.0%
GGATTGGATAATGACTTCTA+TGG + chr1.1:59235777-59235796 MS.gene74896:intron 35.0%
GTAGAATAAGCAAAGCTTCA+GGG - chr1.1:59237645-59237664 None:intergenic 35.0%
GTCCAATACGTGAATAATCT+GGG - chr1.1:59237705-59237724 None:intergenic 35.0%
TACAATTCCTCTTCTCACAA+TGG - chr1.1:59236248-59236267 None:intergenic 35.0%
TATCAATGTCCACAATCTCA+AGG - chr1.1:59238851-59238870 None:intergenic 35.0%
TATGTGATACTTAGGTAGCA+CGG + chr1.1:59237560-59237579 MS.gene74896:intron 35.0%
TATTAATTTCAGAGCCCAGA+TGG + chr1.1:59235104-59235123 MS.gene74896:intron 35.0%
TGAAGAGAAGAAATGTGGTT+TGG + chr1.1:59235899-59235918 MS.gene74896:intron 35.0%
TGAATTAGGATCCAAGAGTA+GGG + chr1.1:59238622-59238641 MS.gene74896:intron 35.0%
TGTTACAATCTTCTTTGTGC+TGG + chr1.1:59238242-59238261 MS.gene74896:CDS 35.0%
TTAATTCCGCATAGGTAGTT+CGG - chr1.1:59238093-59238112 None:intergenic 35.0%
TTAGTAGCTTAAGGCTTGAA+AGG + chr1.1:59234875-59234894 MS.gene74896:CDS 35.0%
TTTGGCCCACAAAAATTATC+AGG + chr1.1:59237836-59237855 MS.gene74896:intron 35.0%
! AATGCCAAGAGGTATGAAAA+TGG + chr1.1:59235412-59235431 MS.gene74896:CDS 35.0%
! AGAAGAAATGTGGTTTGGAA+GGG + chr1.1:59235904-59235923 MS.gene74896:intron 35.0%
! TTGGAAAAGCAAGCTACTTT+CGG + chr1.1:59238823-59238842 MS.gene74896:CDS 35.0%
!! TATTAAAACGATTCGGTGTC+TGG - chr1.1:59236832-59236851 None:intergenic 35.0%
!!! GATTATCTTTTTTGAGGAGG+GGG + chr1.1:59237903-59237922 MS.gene74896:intron 35.0%
!!! TTTTTTTTTTTGTGGTGGCC+GGG + chr1.1:59237017-59237036 MS.gene74896:intron 35.0%
AAAGCTCCTATAGCAACGAA+TGG + chr1.1:59238934-59238953 MS.gene74896:CDS 40.0%
AAGAAGATGCAAAGTGGAAC+AGG - chr1.1:59234767-59234786 None:intergenic 40.0%
AAGCTCCTATAGCAACGAAT+GGG + chr1.1:59238935-59238954 MS.gene74896:CDS 40.0%
ACAACACATTGGTAGGGTAT+TGG + chr1.1:59238667-59238686 MS.gene74896:CDS 40.0%
ACGTTGAATGAGTTTGAAGG+AGG - chr1.1:59238055-59238074 None:intergenic 40.0%
ACTAAGACTAATGTGGAGGT+GGG + chr1.1:59235461-59235480 MS.gene74896:CDS 40.0%
AGGATAACCATTGTGAGAAG+AGG + chr1.1:59236238-59236257 MS.gene74896:intron 40.0%
AGTGACTCTTATCAAGCAAC+CGG + chr1.1:59238218-59238237 MS.gene74896:CDS 40.0%
AGTTCAGTCTCTCCCAAATT+TGG + chr1.1:59237264-59237283 MS.gene74896:CDS 40.0%
ATAAGCAGAGACAGGAGAAA+TGG - chr1.1:59238306-59238325 None:intergenic 40.0%
ATACCTCTTGGCATTTCACT+TGG - chr1.1:59235407-59235426 None:intergenic 40.0%
ATATATAGAGACATGCGTGC+AGG - chr1.1:59237746-59237765 None:intergenic 40.0%
ATTACCTCAATGGTCAGAAC+AGG - chr1.1:59234934-59234953 None:intergenic 40.0%
CAACTTCCAATAGTTGTACC+TGG - chr1.1:59235202-59235221 None:intergenic 40.0%
CAAGATCCAGGTACAACTAT+TGG + chr1.1:59235193-59235212 MS.gene74896:intron 40.0%
CAGAACAAGAAGATGCAAAG+TGG - chr1.1:59234773-59234792 None:intergenic 40.0%
CGTCCAATACGTGAATAATC+TGG - chr1.1:59237706-59237725 None:intergenic 40.0%
GAACACAAATTCCACTCTCT+CGG + chr1.1:59235630-59235649 MS.gene74896:CDS 40.0%
GACCCAGATTATTCACGTAT+TGG + chr1.1:59237700-59237719 MS.gene74896:CDS 40.0%
GCTTCAATGCTGTTAAGATC+AGG - chr1.1:59237314-59237333 None:intergenic 40.0%
GGATCATCACAAGAGATCTA+CGG + chr1.1:59237191-59237210 MS.gene74896:CDS 40.0%
GGCACATACTTCTATTATGG+TGG + chr1.1:59238957-59238976 MS.gene74896:CDS 40.0%
GTTCAGTCTCTCCCAAATTT+GGG + chr1.1:59237265-59237284 MS.gene74896:CDS 40.0%
TACTAAGACTAATGTGGAGG+TGG + chr1.1:59235460-59235479 MS.gene74896:CDS 40.0%
TGAAATGTTCGGTTGCTTCA+AGG - chr1.1:59237524-59237543 None:intergenic 40.0%
TGGGGCACATACTTCTATTA+TGG + chr1.1:59238954-59238973 MS.gene74896:CDS 40.0%
TTGAATGAGTTTGAAGGAGG+AGG - chr1.1:59238052-59238071 None:intergenic 40.0%
TTTGAGGAGGGGGTTTAAAT+TGG + chr1.1:59237913-59237932 MS.gene74896:intron 40.0%
TTTGGAAGGGAAACCTATGA+AGG + chr1.1:59235917-59235936 MS.gene74896:intron 40.0%
! AGTAATGTTAGTTTCGGGGA+TGG + chr1.1:59238017-59238036 MS.gene74896:intron 40.0%
! CTCTCCATTTTCATACCTCT+TGG - chr1.1:59235419-59235438 None:intergenic 40.0%
! GAGAAGAAATGTGGTTTGGA+AGG + chr1.1:59235903-59235922 MS.gene74896:intron 40.0%
! GATCTTAACAGCATTGAAGC+TGG + chr1.1:59237314-59237333 MS.gene74896:CDS 40.0%
! TGCTTTTCCAAAACCATCCT+CGG - chr1.1:59238814-59238833 None:intergenic 40.0%
! TTAACAGCATTGAAGCTGGA+TGG + chr1.1:59237318-59237337 MS.gene74896:CDS 40.0%
!! ACTTCTACAAAGAGGTACTG+TGG + chr1.1:59234810-59234829 MS.gene74896:CDS 40.0%
!!! CTTTGTGTAGTTTTGGATGC+TGG - chr1.1:59234845-59234864 None:intergenic 40.0%
!!! TTTTGGGACGTGTTTCAAAC+AGG - chr1.1:59236092-59236111 None:intergenic 40.0%
!!! TTTTTTTTTTGTGGTGGCCG+GGG + chr1.1:59237018-59237037 MS.gene74896:intron 40.0%
AACCTGAGAGGACCCAAATT+TGG - chr1.1:59237280-59237299 None:intergenic 45.0%
ACCTGAGAGGACCCAAATTT+GGG - chr1.1:59237279-59237298 None:intergenic 45.0%
ACTAACCGACCAACCTTCAT+AGG - chr1.1:59235933-59235952 None:intergenic 45.0%
ACTAATGTGGAGGTGGGAAA+AGG + chr1.1:59235467-59235486 MS.gene74896:CDS 45.0%
AGCTCCTATAGCAACGAATG+GGG + chr1.1:59238936-59238955 MS.gene74896:CDS 45.0%
AGGATCCAAGAGTAGGGAAT+TGG + chr1.1:59238628-59238647 MS.gene74896:intron 45.0%
AGGTGGGAAAAGGAAAAGAG+GGG + chr1.1:59235477-59235496 MS.gene74896:CDS 45.0%
AGTTAAGCTCACGAGGACAA+TGG + chr1.1:59237088-59237107 MS.gene74896:intron 45.0%
ATCCAAGAGTAGGGAATTGG+TGG + chr1.1:59238631-59238650 MS.gene74896:CDS 45.0%
ATCCACCAATTCCCTACTCT+TGG - chr1.1:59238636-59238655 None:intergenic 45.0%
ATTCTCTGGCAATGGTCATG+AGG + chr1.1:59235673-59235692 MS.gene74896:CDS 45.0%
CAGAGAACAGAGCTAGCATT+TGG - chr1.1:59237862-59237881 None:intergenic 45.0%
CCATTGCCAGAGAATACATC+AGG - chr1.1:59235668-59235687 None:intergenic 45.0%
CCTGATGTATTCTCTGGCAA+TGG + chr1.1:59235665-59235684 MS.gene74896:CDS 45.0%
CTGTTGTCACCATAAAGCTC+CGG - chr1.1:59237681-59237700 None:intergenic 45.0%
CTTTCGGAACCTTGAGATTG+TGG + chr1.1:59238839-59238858 MS.gene74896:CDS 45.0%
GAAACAACGCATGGCAAATG+TGG + chr1.1:59235504-59235523 MS.gene74896:CDS 45.0%
GAAGGGAAACCTATGAAGGT+TGG + chr1.1:59235921-59235940 MS.gene74896:intron 45.0%
GAGGTGGGAAAAGGAAAAGA+GGG + chr1.1:59235476-59235495 MS.gene74896:CDS 45.0%
GATGCACCTGATGTATTCTC+TGG + chr1.1:59235659-59235678 MS.gene74896:CDS 45.0%
GGACACTTAGGATTATTCCC+AGG - chr1.1:59238984-59239003 None:intergenic 45.0%
GGGATGCAGCTATATAGTCT+TGG + chr1.1:59235815-59235834 MS.gene74896:intron 45.0%
GTTAAGATCAGGACCATCGA+AGG - chr1.1:59237303-59237322 None:intergenic 45.0%
TATTCACGTATTGGACGGTC+AGG + chr1.1:59237709-59237728 MS.gene74896:intron 45.0%
TGTACTGTACTCCTTCGTAC+AGG - chr1.1:59235566-59235585 None:intergenic 45.0%
TTAGTTTCGGGGATGGAACT+CGG + chr1.1:59238024-59238043 MS.gene74896:intron 45.0%
TTCAAGGAACCGTTGCTTCA+AGG - chr1.1:59237508-59237527 None:intergenic 45.0%
TTCTACTAGTCAGGTCAGTC+CGG + chr1.1:59237659-59237678 MS.gene74896:intron 45.0%
TTGGCGACAACACATTGGTA+GGG + chr1.1:59238661-59238680 MS.gene74896:CDS 45.0%
TTTGGCGACAACACATTGGT+AGG + chr1.1:59238660-59238679 MS.gene74896:CDS 45.0%
! AAATGGGACAAGGTGTCCAA+AGG + chr1.1:59235532-59235551 MS.gene74896:CDS 45.0%
! AAGTGTGTGAATAGCTCTGC+TGG - chr1.1:59238693-59238712 None:intergenic 45.0%
! AATGGGACAAGGTGTCCAAA+GGG + chr1.1:59235533-59235552 MS.gene74896:CDS 45.0%
! AGTGCAAAGCATCTCAACCT+TGG + chr1.1:59238884-59238903 MS.gene74896:CDS 45.0%
! CAGTTGGTTCCTTGAAGCAA+CGG + chr1.1:59237496-59237515 MS.gene74896:intron 45.0%
! GGAAACCTATGAAGGTTGGT+CGG + chr1.1:59235925-59235944 MS.gene74896:intron 45.0%
! GGCAAATGTGGCATCGAAAT+GGG + chr1.1:59235516-59235535 MS.gene74896:CDS 45.0%
! TGGCAAATGTGGCATCGAAA+TGG + chr1.1:59235515-59235534 MS.gene74896:CDS 45.0%
!! ACTTCTATTATGGTGGGCCT+GGG + chr1.1:59238964-59238983 MS.gene74896:CDS 45.0%
!! GAGTTTTGGCGACAACACAT+TGG + chr1.1:59238656-59238675 MS.gene74896:CDS 45.0%
!! GGGAATTGGTGGATGAGTTT+TGG + chr1.1:59238642-59238661 MS.gene74896:CDS 45.0%
!! TACTTCTATTATGGTGGGCC+TGG + chr1.1:59238963-59238982 MS.gene74896:CDS 45.0%
!!! AAAAATTAATTATCTTTTTT+TGG + chr1.1:59235074-59235093 MS.gene74896:intron 5.0%
!!! ATATTAAAAATATATGTTTT+TGG + chr1.1:59236441-59236460 MS.gene74896:intron 5.0%
ACCTCAATGGTCAGAACAGG+AGG - chr1.1:59234931-59234950 None:intergenic 50.0%
AGGGGGTAAGAAACAACGCA+TGG + chr1.1:59235495-59235514 MS.gene74896:CDS 50.0%
CACCAACCGAACTACCTATG+CGG + chr1.1:59238084-59238103 MS.gene74896:intron 50.0%
CGAACTGAGTTAAGCTCACG+AGG + chr1.1:59237081-59237100 MS.gene74896:intron 50.0%
GGAGGTGGGAAAAGGAAAAG+AGG + chr1.1:59235475-59235494 MS.gene74896:CDS 50.0%
GGTGGGAAAAGGAAAAGAGG+GGG + chr1.1:59235478-59235497 MS.gene74896:CDS 50.0%
TCCCAAATTTGGGTCCTCTC+AGG + chr1.1:59237275-59237294 MS.gene74896:CDS 50.0%
TCTCCTGTCTCTGCTTATGC+TGG + chr1.1:59238308-59238327 MS.gene74896:CDS 50.0%
TGTGCCCCATTCGTTGCTAT+AGG - chr1.1:59238943-59238962 None:intergenic 50.0%
TTCCGCATAGGTAGTTCGGT+TGG - chr1.1:59238089-59238108 None:intergenic 50.0%
TTGCCAGCATAAGCAGAGAC+AGG - chr1.1:59238314-59238333 None:intergenic 50.0%
! GACAAGGTGTCCAAAGGGAA+CGG + chr1.1:59235538-59235557 MS.gene74896:CDS 50.0%
! TGTGGCATCGAAATGGGACA+AGG + chr1.1:59235522-59235541 MS.gene74896:CDS 50.0%
AAGGTTCGAGGTTCGAACCC+CGG - chr1.1:59237038-59237057 None:intergenic 55.0%
AGGGAACGGTTCCTGTACGA+AGG + chr1.1:59235552-59235571 MS.gene74896:CDS 55.0%
CAAAACCATCCTCGGCGAAG+TGG - chr1.1:59238806-59238825 None:intergenic 55.0%
CAGGTCAGTCCGGAGCTTTA+TGG + chr1.1:59237669-59237688 MS.gene74896:intron 55.0%
CGACATACCTCCACCCAGAT+GGG + chr1.1:59238774-59238793 MS.gene74896:CDS 55.0%
CGTACAGGAACCGTTCCCTT+TGG - chr1.1:59235551-59235570 None:intergenic 55.0%
GACCATCGAAGGAACCTGAG+AGG - chr1.1:59237292-59237311 None:intergenic 55.0%
GCCTCCTGTTCTGACCATTG+AGG + chr1.1:59234927-59234946 MS.gene74896:CDS 55.0%
GCGCCAAGTGAAATGCCAAG+AGG + chr1.1:59235401-59235420 MS.gene74896:CDS 55.0%
GTCCTCTCAGGTTCCTTCGA+TGG + chr1.1:59237287-59237306 MS.gene74896:CDS 55.0%
! CACTTCGCCGAGGATGGTTT+TGG + chr1.1:59238804-59238823 MS.gene74896:CDS 55.0%
! CAGCATTGAAGCTGGATGGC+AGG + chr1.1:59237322-59237341 MS.gene74896:CDS 55.0%
! CCATCTGGGTGGAGGTATGT+CGG - chr1.1:59238776-59238795 None:intergenic 55.0%
CAGCATGCGATCGCGTACAC+AGG + chr1.1:59237170-59237189 MS.gene74896:intron 60.0%
CCGACATACCTCCACCCAGA+TGG + chr1.1:59238773-59238792 MS.gene74896:CDS 60.0%
GAAGTGGCCGGAACCCATCT+GGG - chr1.1:59238790-59238809 None:intergenic 60.0%
GCATCACTGCTCCGAGAGAG+TGG - chr1.1:59235644-59235663 None:intergenic 60.0%
GTGGCGAGGTGGTGAACTCA+CGG + chr1.1:59238742-59238761 MS.gene74896:CDS 60.0%
GTGGTGAACTCACGGACCGA+CGG + chr1.1:59238750-59238769 MS.gene74896:CDS 60.0%
! ACCTCCACCCAGATGGGTTC+CGG + chr1.1:59238780-59238799 MS.gene74896:CDS 60.0%
ACCATCCTCGGCGAAGTGGC+CGG - chr1.1:59238802-59238821 None:intergenic 65.0%
CGAAGTGGCCGGAACCCATC+TGG - chr1.1:59238791-59238810 None:intergenic 65.0%
! GGTGGAGGTATGTCGGCCGT+CGG - chr1.1:59238769-59238788 None:intergenic 65.0%
GCCGGAACCCATCTGGGTGG+AGG - chr1.1:59238784-59238803 None:intergenic 70.0%
GTGGCCGGAACCCATCTGGG+TGG - chr1.1:59238787-59238806 None:intergenic 70.0%
TCCGGCCACTTCGCCGAGGA+TGG + chr1.1:59238798-59238817 MS.gene74896:CDS 70.0%
GGGTTCCGGCCACTTCGCCG+AGG + chr1.1:59238794-59238813 MS.gene74896:CDS 75.0%


Chromosome Type Strat End Strand Name
chr1.1 gene 59234733 59239007 59234733 ID=MS.gene74896
chr1.1 mRNA 59234733 59239007 59234733 ID=MS.gene74896.t1;Parent=MS.gene74896
chr1.1 exon 59234733 59234948 59234733 ID=MS.gene74896.t1.exon1;Parent=MS.gene74896.t1
chr1.1 CDS 59234733 59234948 59234733 ID=cds.MS.gene74896.t1;Parent=MS.gene74896.t1
chr1.1 exon 59235116 59235202 59235116 ID=MS.gene74896.t1.exon2;Parent=MS.gene74896.t1
chr1.1 CDS 59235116 59235202 59235116 ID=cds.MS.gene74896.t1;Parent=MS.gene74896.t1
chr1.1 exon 59235398 59235694 59235398 ID=MS.gene74896.t1.exon3;Parent=MS.gene74896.t1
chr1.1 CDS 59235398 59235694 59235398 ID=cds.MS.gene74896.t1;Parent=MS.gene74896.t1
chr1.1 exon 59237173 59237343 59237173 ID=MS.gene74896.t1.exon4;Parent=MS.gene74896.t1
chr1.1 CDS 59237173 59237343 59237173 ID=cds.MS.gene74896.t1;Parent=MS.gene74896.t1
chr1.1 exon 59237672 59237725 59237672 ID=MS.gene74896.t1.exon5;Parent=MS.gene74896.t1
chr1.1 CDS 59237672 59237725 59237672 ID=cds.MS.gene74896.t1;Parent=MS.gene74896.t1
chr1.1 exon 59238218 59238364 59238218 ID=MS.gene74896.t1.exon6;Parent=MS.gene74896.t1
chr1.1 CDS 59238218 59238364 59238218 ID=cds.MS.gene74896.t1;Parent=MS.gene74896.t1
chr1.1 exon 59238630 59239007 59238630 ID=MS.gene74896.t1.exon7;Parent=MS.gene74896.t1
chr1.1 CDS 59238630 59239007 59238630 ID=cds.MS.gene74896.t1;Parent=MS.gene74896.t1
Gene Sequence

>MS.gene74896

ATGTATATTGTTGAGAGAAAGAGAAGGTATTCCTGTTCCACTTTGCATCTTCTTGTTCTGACTTTCTTCATTGCCATACTTCTACAAAGAGGTACTGTGGCTGAATCATCCAGCATCCAAAACTACACAAAGTATAGACAAATTAGTAGCTTAAGGCTTGAAAGGATTAATAAGCACTTAGACAAGATTAACAAGCCTCCTGTTCTGACCATTGAGGTAATGTTATTTATTGCCATTAATGTTTCATATAATGTGTTTATAGTGGTTGAGATTTTAATGACCATGCACACAAAATAAATGTTTTTGTTTTCCTTCCCTTTTTTTTTGTTTATCTATAAAAAAAAAATTAATTATCTTTTTTTGGTTGGTGTTATTAATTTCAGAGCCCAGATGGAGATCTTATAGATTGTGTCCACAAAAGAAAACAACTAGCTTTGGATCACCCACTTTTAAAGAATCACAAGATCCAGGTACAACTATTGGAAGTTGACTATTGAATATGATTTGATAATTAATGTAACACATAATACTAGTTTTTTTTTTATTGTGTTTAACATGTCTTTATAAAATGGACTTGTTAAATAAAGAAGGTCAGTGTTTATAAACTTTTTTAAACTTTATCTCTTCTAAATGTATGACTTGATTTTTTTTTTTTTTCAATACAGAAAGCGCCAAGTGAAATGCCAAGAGGTATGAAAATGGAGAGAGATGACAATGGTGATAATATTACTAAGACTAATGTGGAGGTGGGAAAAGGAAAAGAGGGGGTAAGAAACAACGCATGGCAAATGTGGCATCGAAATGGGACAAGGTGTCCAAAGGGAACGGTTCCTGTACGAAGGAGTACAGTACATGATGTGTTGAGAGCAAAATCATTGTATGATTATGGTAAAAAACGAACACAAATTCCACTCTCTCGGAGCAGTGATGCACCTGATGTATTCTCTGGCAATGGTCATGAGGTATGTATGATCTTACTATAATTACATGGCTATACACTTTGATGATTTCAATCTAGATATATTATGGAAAATAATGCTACGTGGATTGGATAATGACTTCTATGGGTTAATATATAATTAGGGATGCAGCTATATAGTCTTGGAAATATGACCATTAGTGTGATATTAGGTGTTTCTAAATTAGTCCTAAACTTTATTTAGAAATGAAGAGAAGAAATGTGGTTTGGAAGGGAAACCTATGAAGGTTGGTCGGTTAGTTTATAAATTATAAGGAATATTAGTTATTAGCAAAGTTGGTAAATACTTAACAATTAACAACAATAATATGATTACCAAATAAATATCAAATAATTGAGTATTTGTAAAAGAAAAACAAATAATTGAGTATTAAGAGCCTGTTTGAAACACGTCCCAAAAACTCTTTTTTAGTTTTTAAAAACTTGAAAATTAAAAACTTGTTTGCTAAACTATTTTTAAAATTACAGTTTTGGAAACTGTTTTGAATTTTTTAGTTTTGGGGACTAAAAAACTAAAACATGTAAAAGGATAACCATTGTGAGAAGAGGAATTGTATATTTCAAAAACTGAAAACAAAAACTATTTCAAACAGGCCCTAAGTCTTACATTTTTTCCAAAAGAAATAAAGGATTAAATTACTAGAAATTTTAGGTGATGACTAATATTTAATTAATGTCATCAATTTTAAAAAGTGCGTGATTACTCTTTGTATACTCAAAACTATAGTAATATTAAAAATATATGTTTTTGGAGAAACAGAAGATTCAACCTCAACTGTTTGATATACACTCATTATATAATTTTACCATATGACATTAAAGATTTAGATATAGTGATAACTAAATCATGAATGCAAGGGTTAAAATAGTATAAAATTTGATGGAAAATGTAATTTTTACAGATAGATCTAGCTAGCAAATCTGTCCCAAAAAAAAAATCTAGCTAGCAAATGATTCTAGTTGATCCTTAATTAATTAAACTTCAAGTTTTTTTTTGAATAATAATTAAACTTCAAGTTGTTATCTTCTCATTATATTAAAATGTTATCTTCTCATTATATTAAAATGTCAACAAGATCAATTTTTCTTTTCATCACTCTATAAAGTTGTAATTCAACCAGACACCGAATCGTTTTAATAAATTTTTAATTTCAGAATTGAATGTAATCAAGATTGCTTTATTTGTACTTCAAGTCATATTATCTTTTCTTACACTCTTAAACTTTGTTAAACATTGTTGTGATTTGACAAATGTTTTTTTAATCATAATAGTAGTAATTTATTATTTCTAATGGAAGAAGACTTTTTTTTTTTTTGTGGTGGCCGGGGTTCGAACCTCGAACCTTGCATATTTTATGCATTGTCTCTACGAACTGAGTTAAGCTCACGAGGACAATGGAAGAAGACTCTGCACTAATTATATGTATTCAAATAATTAAAATAAAATTTGTTCGTGTGCAGCATGCGATCGCGTACACAGGATCATCACAAGAGATCTACGGTGCAAAAGCATCAATAAGTGTATGGGATCCATCTATTGAAGTTATGAACGAGTTCAGTCTCTCCCAAATTTGGGTCCTCTCAGGTTCCTTCGATGGTCCTGATCTTAACAGCATTGAAGCTGGATGGCAGGTACTCCTTCTGACTTCTAGTATTTCAATTTTTTGATATAGTTACATACAATTAAGTTTAAACTCCAACTTACAAAATTCATGTATTAATTTATTGCCTGACAGTGTATATTATAATATAGTACTGGTATATATAGTATAGACACTCATTTTCAGTTGGTTCCTTGAAGCAACGGTTCCTTGAAGCAACCGAACATTTCATGTGTTAATTAGATTATATGTGATACTTAGGTAGCACGGCACATATTATATTCAATGTATAGAAAAAGAAATATACTAATTTTATTTAATGAAATGGTCCCTGAAGCTTTGCTTATTCTACTAGTCAGGTCAGTCCGGAGCTTTATGGTGACAACAGACCCAGATTATTCACGTATTGGACGGTCAGGATTTCTTCTCTCCTGCACGCATGTCTCTATATATTTAAATTGTTAGTTTTTATAGTGTTTATTGGGGTGGAAAAAGTAATAGTATAATTTATTTGACTAAAAAATTTGGCCCACAAAAATTATCAGGCCAAATGCTAGCTCTGTTCTCTGTTAGCCCAAATCATATACTTTGATTATCTTTTTTGAGGAGGGGGTTTAAATTGGAATGATAGAAAAGAGGGCATAGTAAGATCATGATAAAAGTTTCAGATATTTTTTGTATATGGAAATGTTAGCAATGTTAGTAGTAATGTTAGTTTCGGGGATGGAACTCGGAACCTCCTCCTTCAAACTCATTCAACGTTTCTTAGTTCACCAACCGAACTACCTATGCGGAATTAATTAGGTTTAAGCTATAACTAGCTGCAGTTATTCAGCTGCAATTAATTAAGTTGTAAATTTTTTGTTCTTTATAAATCTTACATAGTTGTTTATTTGGTGATGCAGAGTGACTCTTATCAAGCAACCGGCTGTTACAATCTTCTTTGTGCTGGTTTTATTCAAACCAATAGTAAAATAGCTATTGGAGCTGCCATTTCTCCTGTCTCTGCTTATGCTGGCAACCAATATGACATTTCAATCCTCATTTGGAAGGTCAATATTTCTTCCACATACAAATTCATTTAAAAAAAAGGAAGTATATAAATTATTATTTATTAAAACGGCACAAATAGTTAGTTTACTTAGGAAATTTGAATGTTAGGGTTTATAAGATCAAATTCTTACTGTTGAACTGATACTTTATAGACACGCGCAGATTCATTAAACCAAAATTGTTTACTTTTTATAAAAGAAAAAAAATTGCATAAATTAAAGGATAATCTTTTCACATTTTTTTGTTGTTGTGAATATGAATTAGGATCCAAGAGTAGGGAATTGGTGGATGAGTTTTGGCGACAACACATTGGTAGGGTATTGGCCAGCAGAGCTATTCACACACTTAGCCGATCACGCCACCATGGTAGAATGGGGTGGCGAGGTGGTGAACTCACGGACCGACGGCCGACATACCTCCACCCAGATGGGTTCCGGCCACTTCGCCGAGGATGGTTTTGGAAAAGCAAGCTACTTTCGGAACCTTGAGATTGTGGACATTGATAACACTCTTAGCTCAGTGCAAAGCATCTCAACCTTGGCTGAAAATACAAATTGTTATGATATTCAAAGCTCCTATAGCAACGAATGGGGCACATACTTCTATTATGGTGGGCCTGGGAATAATCCTAAGTGTCCATGA
Protein sequence

>MS.gene74896.t1

MYIVERKRRYSCSTLHLLVLTFFIAILLQRGTVAESSSIQNYTKYRQISSLRLERINKHLDKINKPPVLTIESPDGDLIDCVHKRKQLALDHPLLKNHKIQKAPSEMPRGMKMERDDNGDNITKTNVEVGKGKEGVRNNAWQMWHRNGTRCPKGTVPVRRSTVHDVLRAKSLYDYGKKRTQIPLSRSSDAPDVFSGNGHEHAIAYTGSSQEIYGAKASISVWDPSIEVMNEFSLSQIWVLSGSFDGPDLNSIEAGWQVSPELYGDNRPRLFTYWTSDSYQATGCYNLLCAGFIQTNSKIAIGAAISPVSAYAGNQYDISILIWKDPRVGNWWMSFGDNTLVGYWPAELFTHLADHATMVEWGGEVVNSRTDGRHTSTQMGSGHFAEDGFGKASYFRNLEIVDIDNTLSSVQSISTLAENTNCYDIQSSYSNEWGTYFYYGGPGNNPKCP