AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene027675

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene027675.t1 MTR_5g033650 99.138 348 3 0 7 354 19 366 0.0 723
MS.gene027675.t1 MTR_8g069575 78.510 349 73 2 7 354 64 411 0.0 587
MS.gene027675.t1 MTR_4g105400 78.448 348 72 3 9 354 12 358 0.0 579
MS.gene027675.t1 MTR_3g077430 73.714 350 88 4 7 354 118 465 0.0 556
MS.gene027675.t1 MTR_8g069610 64.756 349 121 2 7 354 67 414 2.22e-175 493
MS.gene027675.t1 MTR_8g069600 63.043 368 119 5 2 354 28 393 7.15e-167 471
MS.gene027675.t1 MTR_3g095890 63.143 350 113 6 7 353 97 433 5.72e-158 450
MS.gene027675.t1 MTR_1g079730 57.853 382 126 7 7 354 71 451 1.30e-154 442
MS.gene027675.t1 MTR_7g116420 58.760 371 129 7 7 353 69 439 2.10e-154 441
MS.gene027675.t1 MTR_8g088510 59.178 365 130 6 7 353 52 415 2.85e-153 437
MS.gene027675.t1 MTR_8g069720 57.835 351 138 3 7 354 64 407 2.76e-151 432
MS.gene027675.t1 MTR_8g069580 60.399 351 114 5 7 354 66 394 4.95e-149 426
MS.gene027675.t1 MTR_2g062610 56.640 369 137 6 7 354 60 426 1.33e-144 416
MS.gene027675.t1 MTR_8g069590 63.487 304 106 5 53 354 5 305 5.87e-139 397
MS.gene027675.t1 MTR_8g069660 53.371 356 153 5 1 354 56 400 4.14e-133 385
MS.gene027675.t1 MTR_2g062610 58.442 308 117 3 57 354 30 336 2.10e-132 381
MS.gene027675.t1 MTR_2g062610 58.442 308 117 3 57 354 37 343 3.92e-132 381
MS.gene027675.t1 MTR_8g069640 53.582 349 149 4 7 353 67 404 6.82e-131 380
MS.gene027675.t1 MTR_8g069715 53.803 355 148 6 7 354 65 410 5.64e-129 375
MS.gene027675.t1 MTR_2g093840 56.075 321 125 7 38 354 52 360 3.82e-118 346
MS.gene027675.t1 MTR_2g073040 64.732 224 75 2 7 230 50 269 1.88e-105 311
MS.gene027675.t1 MTR_2g073020 61.161 224 83 2 7 230 63 282 2.34e-98 293
MS.gene027675.t1 MTR_6g012620 39.678 373 196 9 7 354 42 410 7.29e-88 270
MS.gene027675.t1 MTR_8g069695 48.800 250 122 4 108 354 13 259 6.68e-84 255
MS.gene027675.t1 MTR_3g104030 41.370 365 188 9 7 350 51 410 1.98e-82 257
MS.gene027675.t1 MTR_3g104000 39.305 374 199 6 7 354 46 417 3.03e-82 256
MS.gene027675.t1 MTR_3g103980 39.247 372 199 9 7 354 67 435 7.17e-82 256
MS.gene027675.t1 MTR_3g104070 38.298 376 197 11 7 354 54 422 6.69e-79 248
MS.gene027675.t1 MTR_1g016910 37.119 361 196 7 22 354 63 420 1.70e-74 236
MS.gene027675.t1 MTR_3g104030 40.615 325 164 7 50 350 27 346 1.22e-72 229
MS.gene027675.t1 MTR_8g040850 32.976 373 212 13 1 350 33 390 7.99e-50 171
MS.gene027675.t1 MTR_8g069630 61.417 127 46 3 230 354 4 129 2.04e-48 159
MS.gene027675.t1 MTR_5g078580 33.233 331 201 10 7 331 51 367 3.46e-47 164
MS.gene027675.t1 MTR_8g040890 33.333 384 201 15 7 348 48 418 4.05e-47 165
MS.gene027675.t1 MTR_3g108680 31.714 350 215 13 7 350 55 386 2.25e-45 160
MS.gene027675.t1 MTR_8g069750 57.522 113 48 0 163 275 151 263 1.53e-41 147
MS.gene027675.t1 MTR_8g104480 32.370 346 204 14 16 348 9 337 7.19e-41 147
MS.gene027675.t1 MTR_2g046390 32.295 353 196 14 12 348 43 368 1.04e-39 144
MS.gene027675.t1 MTR_8g012985 39.331 239 130 10 120 348 4 237 1.67e-38 137
MS.gene027675.t1 MTR_5g094280 33.463 257 153 9 7 258 35 278 7.66e-38 139
MS.gene027675.t1 MTR_5g092260 29.178 353 211 11 7 350 62 384 2.25e-35 133
MS.gene027675.t1 MTR_2g046520 37.603 242 137 10 119 350 3 240 5.10e-35 128
MS.gene027675.t1 MTR_2g046430 37.603 242 137 10 119 350 3 240 9.67e-35 127
MS.gene027675.t1 MTR_8g069665 67.059 85 27 1 9 93 109 192 2.87e-34 125
MS.gene027675.t1 MTR_2g046300 30.966 352 187 15 12 348 43 353 1.88e-32 124
MS.gene027675.t1 MTR_5g065260 34.211 190 115 5 120 307 2 183 6.96e-28 109
MS.gene027675.t1 MTR_2g073050 67.606 71 22 1 284 354 1 70 6.85e-27 101
MS.gene027675.t1 MTR_7g072230 36.571 175 98 8 182 346 34 205 2.78e-23 96.3
MS.gene027675.t1 MTR_8g069950 74.545 55 14 0 182 236 58 112 4.58e-22 90.5
MS.gene027675.t1 MTR_0009s0020 35.766 137 83 4 164 300 18 149 1.59e-20 87.0
MS.gene027675.t1 MTR_2g046390 26.496 351 176 15 12 348 43 325 1.11e-18 86.3
MS.gene027675.t1 MTR_5g065920 50.000 56 26 1 109 164 9 62 1.59e-13 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene027675.t1 AT1G70550 79.282 362 65 3 2 354 105 465 0.0 612
MS.gene027675.t1 AT1G23340 81.089 349 64 2 7 354 62 409 0.0 610
MS.gene027675.t1 AT1G23340 81.089 349 64 2 7 354 62 409 0.0 610
MS.gene027675.t1 AT1G10750 79.943 349 68 2 7 354 120 467 0.0 606
MS.gene027675.t1 AT5G50150 76.791 349 80 1 7 354 72 420 0.0 575
MS.gene027675.t1 AT5G18460 58.743 366 131 7 7 353 65 429 5.78e-155 442
MS.gene027675.t1 AT1G55360 58.197 366 134 5 7 354 58 422 1.87e-151 433
MS.gene027675.t1 AT3G13510 57.808 365 136 5 7 354 56 419 5.54e-151 432
MS.gene027675.t1 AT5G56530 56.593 364 140 6 7 353 57 419 1.30e-145 418
MS.gene027675.t1 AT5G56530 56.593 364 140 6 7 353 57 419 1.30e-145 418
MS.gene027675.t1 AT2G44210 54.076 368 148 5 7 354 49 415 1.70e-140 405
MS.gene027675.t1 AT2G44210 54.098 366 147 5 9 354 81 445 1.37e-139 404
MS.gene027675.t1 AT1G23340 79.911 224 44 1 7 230 62 284 1.60e-134 385
MS.gene027675.t1 AT2G44220 52.101 357 159 7 7 354 50 403 9.51e-126 367
MS.gene027675.t1 AT2G44240 50.140 357 165 6 7 354 50 402 1.05e-116 344
MS.gene027675.t1 AT3G48230 48.045 358 176 9 4 354 19 373 1.09e-109 325
MS.gene027675.t1 AT2G17750 45.658 357 178 11 7 353 45 395 2.19e-106 317
MS.gene027675.t1 AT2G19360 45.358 377 175 8 7 353 50 425 3.68e-104 313
MS.gene027675.t1 AT2G44250 47.790 362 168 9 7 353 53 408 1.87e-100 303
MS.gene027675.t1 AT1G70550 75.000 188 38 2 2 181 105 291 2.05e-100 298
MS.gene027675.t1 AT5G19170 45.143 350 174 8 7 348 26 365 1.89e-98 297
MS.gene027675.t1 AT2G44250 47.095 327 155 8 42 353 2 325 9.77e-88 267
MS.gene027675.t1 AT1G10750 62.564 195 71 2 7 200 120 313 9.82e-85 261
MS.gene027675.t1 AT5G25950 37.466 363 195 8 21 354 73 432 4.70e-74 236
MS.gene027675.t1 AT2G20170 39.368 348 193 13 12 348 56 396 1.93e-69 223
MS.gene027675.t1 AT2G20170 39.368 348 193 13 12 348 56 396 1.93e-69 223
MS.gene027675.t1 AT5G25960 36.735 343 169 8 21 354 54 357 4.62e-64 207
MS.gene027675.t1 AT4G23370 35.227 352 207 12 12 348 56 401 8.92e-61 201
MS.gene027675.t1 AT2G20170 36.782 348 185 13 12 348 56 379 1.25e-60 199
MS.gene027675.t1 AT4G23390 36.544 353 196 15 12 348 57 397 1.87e-57 192
MS.gene027675.t1 AT4G23380 32.665 349 211 11 13 348 61 398 7.98e-56 187
MS.gene027675.t1 AT4G23350 33.333 351 211 11 12 348 59 400 3.96e-55 186
MS.gene027675.t1 AT4G23365 32.065 368 222 14 1 348 39 398 4.57e-53 180
MS.gene027675.t1 AT4G23355 33.524 349 211 13 12 348 59 398 4.11e-51 175
MS.gene027675.t1 AT4G23360 32.764 351 212 12 12 348 59 399 5.71e-51 175
MS.gene027675.t1 AT2G35250 34.286 350 184 11 13 350 24 339 8.38e-50 170
MS.gene027675.t1 AT4G17505 30.571 350 190 12 8 354 22 321 3.01e-42 150
MS.gene027675.t1 AT2G27320 33.871 310 174 9 15 320 30 312 1.95e-40 145
MS.gene027675.t1 AT4G15050 31.579 361 209 17 7 348 53 394 6.17e-39 143
MS.gene027675.t1 AT5G46810 28.652 356 214 11 16 348 11 349 7.01e-38 139
MS.gene027675.t1 AT5G46820 29.060 351 211 11 16 348 17 347 3.54e-37 137
MS.gene027675.t1 AT1G10190 31.667 360 210 16 7 348 53 394 6.89e-37 137
MS.gene027675.t1 AT5G25410 28.235 340 217 13 16 348 44 363 6.20e-34 129
MS.gene027675.t1 AT4G15053 29.041 365 216 16 7 348 57 401 6.55e-32 124
MS.gene027675.t1 AT5G60380 28.280 343 217 13 16 348 44 367 2.75e-31 122
MS.gene027675.t1 AT5G46200 27.154 383 221 14 16 348 31 405 3.27e-31 122
MS.gene027675.t1 AT5G05030 29.429 350 208 15 14 350 36 359 7.82e-31 120
MS.gene027675.t1 AT2G24950 28.412 359 220 15 7 348 71 409 1.12e-30 120
MS.gene027675.t1 AT4G17860 30.114 352 198 15 16 348 29 351 1.14e-30 120
MS.gene027675.t1 AT2G38255 33.333 204 115 5 16 219 14 196 4.06e-28 109
MS.gene027675.t1 AT4G23373 33.503 197 104 7 11 204 55 227 5.33e-28 111
MS.gene027675.t1 AT4G10220 28.255 361 215 16 7 348 63 398 7.48e-27 110
MS.gene027675.t1 AT5G11660 27.302 315 204 9 42 350 9 304 1.81e-24 102
MS.gene027675.t1 AT4G23080 28.649 370 212 19 7 350 63 406 4.56e-24 102
MS.gene027675.t1 AT2G03930 47.573 103 50 3 107 207 42 142 1.35e-23 95.9
MS.gene027675.t1 AT4G10210 28.221 326 188 15 7 311 63 363 9.35e-23 98.6
MS.gene027675.t1 AT5G25415 31.301 246 143 9 119 350 99 332 1.50e-22 97.1
MS.gene027675.t1 AT5G36680 28.000 300 184 12 66 353 52 331 2.50e-22 96.7
MS.gene027675.t1 AT5G36770 28.000 300 184 12 66 353 52 331 2.50e-22 96.7
MS.gene027675.t1 AT5G04937 31.122 196 109 7 160 348 22 198 3.41e-16 76.6
MS.gene027675.t1 AT5G37520 29.437 231 123 13 125 349 2 198 5.75e-13 67.4

Find 99 sgRNAs with CRISPR-Local

Find 236 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCCAAATGTGGGTCATTTC+TGG 0.097699 5.2:-23693548 MS.gene027675:CDS
ACCCTAGATTCTTTACTTAT+TGG 0.178065 5.2:-23693236 MS.gene027675:CDS
GGAAATTGGTGGCTTGAATT+TGG 0.193828 5.2:-23691879 MS.gene027675:CDS
TGATACCCTTGTCAAATCTA+AGG 0.217147 5.2:-23691647 MS.gene027675:CDS
TTTGATCATCCTATGTTAAA+AGG 0.226362 5.2:-23694871 MS.gene027675:CDS
TTGGAAAAGCATCATACTTT+AGG 0.235413 5.2:-23691701 MS.gene027675:CDS
TGCTACAATTTATTGTGTTC+TGG 0.247960 5.2:-23693039 MS.gene027675:CDS
CCTTGTATGTCATAGCAATT+TGG 0.252357 5.2:+23691609 None:intergenic
AGCCACCAATTTCCATGCTT+TGG 0.286320 5.2:+23691888 None:intergenic
TGTTCCGTTGTTCTTCTGAT+TGG 0.289858 5.2:+23694617 None:intergenic
TTGATATTAGCTTGCTCATT+TGG 0.296514 5.2:-23692942 MS.gene027675:CDS
AGGATCCAAAGCATGGAAAT+TGG 0.304845 5.2:-23691893 MS.gene027675:CDS
CAAAACCTTCTCCAGCAAAA+TGG 0.320633 5.2:+23691721 None:intergenic
TGAATTTGGGTCCGGAATAT+TGG 0.327218 5.2:-23691865 MS.gene027675:CDS
AAGGAGGAATAAATAATGTT+TGG 0.330732 5.2:-23691590 MS.gene027675:CDS
AGGAGGAATAAATAATGTTT+GGG 0.337415 5.2:-23691589 MS.gene027675:CDS
TGGGTCATTTCTGGTTCATT+TGG 0.337735 5.2:-23693539 MS.gene027675:CDS
GGACATTTCACATTTCTTCC+TGG 0.340362 5.2:+23691543 None:intergenic
CATGCAAGTATGGTACAATT+TGG 0.342749 5.2:-23691801 MS.gene027675:CDS
CTGATTGGAATTGTTCCTTC+CGG 0.346847 5.2:+23694632 None:intergenic
CAGGTCAGCCCTGAGCTCTA+TGG 0.355105 5.2:-23693267 MS.gene027675:CDS
GCTAGTTCTATCAATACATT+TGG 0.356680 5.2:-23694581 MS.gene027675:CDS
AACCAGAAATGACCCACATT+TGG 0.359453 5.2:+23693546 None:intergenic
GAAATTGGTGGCTTGAATTT+GGG 0.362311 5.2:-23691878 MS.gene027675:CDS
CTTAAGGGATCATGCAAGTA+TGG 0.364508 5.2:-23691811 MS.gene027675:CDS
GGGACAAGCTGAATTCATAT+TGG 0.364643 5.2:+23693567 None:intergenic
AATTAAGACGACGTGTTAGA+AGG 0.366419 5.2:-23694553 MS.gene027675:CDS
GTCCAATAAGTAAAGAATCT+AGG 0.379605 5.2:+23693234 None:intergenic
GTGACTGGAAATCAATACTA+TGG 0.379746 5.2:-23693632 MS.gene027675:CDS
CAACGGAACAAGACATGTTA+AGG 0.387654 5.2:-23694604 MS.gene027675:CDS
GAATTTGCAAGTTGTGGATT+GGG 0.390025 5.2:-23691679 MS.gene027675:CDS
GTCACACACTTCAACTCAAA+TGG 0.392629 5.2:-23691751 MS.gene027675:CDS
GGCCTAAAACTCATAACAAA+AGG 0.404718 5.2:-23694706 MS.gene027675:CDS
TTTCAGTCATGGAGCTTGTC+GGG 0.407788 5.2:-23694665 MS.gene027675:CDS
AGGTCAGCCCTGAGCTCTAT+GGG 0.413270 5.2:-23693266 MS.gene027675:CDS
GGAATTTGCAAGTTGTGGAT+TGG 0.413386 5.2:-23691680 MS.gene027675:CDS
CCAGTACCCTACCAATATTC+CGG 0.428538 5.2:+23691854 None:intergenic
ACCAGAAATGACCCACATTT+GGG 0.434022 5.2:+23693547 None:intergenic
CACCATTGAAGCTGGTTGGC+AGG 0.439642 5.2:-23693504 MS.gene027675:intron
TGCCTGCCAACCAGCTTCAA+TGG 0.441924 5.2:+23693502 None:intergenic
ACTAACAATAAAATTGCAAT+TGG 0.449628 5.2:-23693006 MS.gene027675:CDS
TGGTGGCTTGAATTTGGGTC+CGG 0.451727 5.2:-23691873 MS.gene027675:CDS
CTTTAGGAATTTGCAAGTTG+TGG 0.454834 5.2:-23691685 MS.gene027675:CDS
AGTGATGCATATCAAGCAAC+TGG 0.460487 5.2:-23693063 MS.gene027675:CDS
CTCCAACTTCTTCATACACT+GGG 0.468544 5.2:-23692972 MS.gene027675:CDS
TAACTGTCCCCATAGAGCTC+AGG 0.469376 5.2:+23693258 None:intergenic
TCCAATAAGTAAAGAATCTA+GGG 0.480244 5.2:+23693235 None:intergenic
AACATAGGATGATCAAAAGC+TGG 0.480414 5.2:+23694877 None:intergenic
CCGGAATATTGGTAGGGTAC+TGG 0.498895 5.2:-23691854 MS.gene027675:CDS
TGGGGCCCACACGTTTATGC+TGG 0.504864 5.2:+23693601 None:intergenic
TATTAGCTTGCTCATTTGGA+AGG 0.505252 5.2:-23692938 MS.gene027675:intron
GATACCCTTGTCAAATCTAA+GGG 0.511589 5.2:-23691646 MS.gene027675:CDS
ATTAAGACGACGTGTTAGAA+GGG 0.532304 5.2:-23694552 MS.gene027675:CDS
AACGGAACAAGACATGTTAA+GGG 0.533255 5.2:-23694603 MS.gene027675:CDS
GATCTCAACACCATTGAAGC+TGG 0.533568 5.2:-23693512 MS.gene027675:CDS
TCACACACTTCAACTCAAAT+GGG 0.534918 5.2:-23691750 MS.gene027675:CDS
AGAAATGTGAAATGTCCCTA+AGG 0.537968 5.2:-23691537 None:intergenic
GCCTAAAACTCATAACAAAA+GGG 0.541050 5.2:-23694705 MS.gene027675:CDS
AATTCAGCTTGTCCCAAATG+TGG 0.546123 5.2:-23693559 MS.gene027675:CDS
TCTCCAACTTCTTCATACAC+TGG 0.546777 5.2:-23692973 MS.gene027675:CDS
GCAAGTATGGTACAATTTGG+TGG 0.547559 5.2:-23691798 MS.gene027675:CDS
TTTGGGTCCGGAATATTGGT+AGG 0.551957 5.2:-23691861 MS.gene027675:CDS
CCAAATTGCTATGACATACA+AGG 0.552229 5.2:-23691609 MS.gene027675:CDS
AACTGTCCCCATAGAGCTCA+GGG 0.555050 5.2:+23693259 None:intergenic
ATTGTTGTACAGCATGCAGT+TGG 0.557575 5.2:-23693659 MS.gene027675:intron
TAGATTCTTTACTTATTGGA+CGG 0.561026 5.2:-23693232 MS.gene027675:intron
CTTGTCGGGTGAATCATGTC+CGG 0.562105 5.2:-23694651 MS.gene027675:CDS
TCATATTGGTTTGCTACACG+TGG 0.564972 5.2:+23693581 None:intergenic
CATTCTATGATATCACCGTC+AGG 0.565456 5.2:+23694919 None:intergenic
CACAAATAGCAATGGACATG+AGG 0.575064 5.2:-23694528 MS.gene027675:intron
CATGCAGTTGGATATGTGAC+TGG 0.584752 5.2:-23693647 MS.gene027675:CDS
ATCCAAAGCATGGAAATTGG+TGG 0.585312 5.2:-23691890 MS.gene027675:CDS
GGAGGAATAAATAATGTTTG+GGG 0.587413 5.2:-23691588 MS.gene027675:CDS
GTGTGCAGGATCCTCCAGAA+AGG 0.596318 5.2:-23694727 MS.gene027675:intron
TCAACACCATTGAAGCTGGT+TGG 0.598714 5.2:-23693508 MS.gene027675:CDS
CATATTGGTTTGCTACACGT+GGG 0.599011 5.2:+23693582 None:intergenic
CAAAGGCCAGCATAAACGTG+TGG 0.603420 5.2:-23693607 MS.gene027675:CDS
GAAATGTGAAATGTCCCTAA+GGG 0.609542 5.2:-23691536 None:intergenic
TTGGGTCCGGAATATTGGTA+GGG 0.616627 5.2:-23691860 MS.gene027675:CDS
TAGAACCCTTAGATTTGACA+AGG 0.625722 5.2:+23691641 None:intergenic
ACTTCAACTCAAATGGGTAG+TGG 0.626407 5.2:-23691744 MS.gene027675:CDS
AAAGGCCAGCATAAACGTGT+GGG 0.627144 5.2:-23693606 MS.gene027675:CDS
AGAAGGGACACAAATAGCAA+TGG 0.629086 5.2:-23694536 MS.gene027675:CDS
ATTCAGCTTGTCCCAAATGT+GGG 0.629178 5.2:-23693558 MS.gene027675:CDS
GTTAAAAGGACAAAGACCAC+TGG 0.629673 5.2:-23694857 MS.gene027675:intron
CCAACTTCTTCATACACTGG+GGG 0.635524 5.2:-23692970 MS.gene027675:CDS
TCCAACTTCTTCATACACTG+GGG 0.635612 5.2:-23692971 MS.gene027675:CDS
TCGGGTGAATCATGTCCGGA+AGG 0.643411 5.2:-23694647 MS.gene027675:CDS
GTCAAATCTAAGGGTTCTAG+CGG 0.646768 5.2:-23691637 MS.gene027675:CDS
AAATCAATACTATGGAGCAA+AGG 0.652318 5.2:-23693624 MS.gene027675:CDS
GAAATTGTGAATTCAAGACA+AGG 0.660538 5.2:-23691774 MS.gene027675:CDS
GAGGAATAAATAATGTTTGG+GGG 0.669410 5.2:-23691587 MS.gene027675:CDS
AATTCCAATCAGAAGAACAA+CGG 0.674959 5.2:-23694621 MS.gene027675:CDS
ATATTGGTTTGCTACACGTG+GGG 0.675332 5.2:+23693583 None:intergenic
CAACTTCTTCATACACTGGG+GGG 0.695832 5.2:-23692969 MS.gene027675:CDS
GGTCAGCCCTGAGCTCTATG+GGG 0.696304 5.2:-23693265 MS.gene027675:CDS
AGAACCCTTAGATTTGACAA+GGG 0.704158 5.2:+23691642 None:intergenic
AAATTGTGAATTCAAGACAA+GGG 0.714404 5.2:-23691773 MS.gene027675:CDS
AATTGCTATGACATACAAGG+AGG 0.724912 5.2:-23691606 MS.gene027675:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAAATAAAAAAATAAAAT+TGG + chr5.2:23694036-23694055 None:intergenic 0.0%
!!! AATTTAAATTACTTTTTTTC+AGG - chr5.2:23693593-23693612 MS.gene027675:CDS 10.0%
!!! ATAAAAAAGAATTTTTATCT+TGG + chr5.2:23694488-23694507 None:intergenic 10.0%
!!! GACATTTTTTTTTAAAATAT+CGG + chr5.2:23692970-23692989 None:intergenic 10.0%
!!! GTAATTTAAATTAGTTTATT+TGG + chr5.2:23693585-23693604 None:intergenic 10.0%
!!! TTGTTTTACTATTTTATTTT+AGG - chr5.2:23694966-23694985 MS.gene027675:intron 10.0%
!! AGATACAAAAATTAAAAACA+TGG + chr5.2:23693559-23693578 None:intergenic 15.0%
!! ATAAAACTCAATAAAGAAAA+GGG - chr5.2:23693675-23693694 MS.gene027675:intron 15.0%
!! ATGTATAAGTTAAGATATAA+GGG - chr5.2:23692088-23692107 MS.gene027675:intron 15.0%
!! CAAAATACAAAAATAACAAA+AGG - chr5.2:23694927-23694946 MS.gene027675:intron 15.0%
!! TATAAAACTCAATAAAGAAA+AGG - chr5.2:23693674-23693693 MS.gene027675:intron 15.0%
!! TATACATCAATAAAAATTTG+AGG + chr5.2:23693145-23693164 None:intergenic 15.0%
!! TATGTATAAGTTAAGATATA+AGG - chr5.2:23692087-23692106 MS.gene027675:intron 15.0%
!! TTTATTCACTTTAATACTTT+GGG - chr5.2:23694597-23694616 MS.gene027675:CDS 15.0%
!!! AAATAGTCAATAATTTTCTA+AGG + chr5.2:23694000-23694019 None:intergenic 15.0%
!!! AATTTAGTTTTACTATTGAT+TGG - chr5.2:23694064-23694083 MS.gene027675:intron 15.0%
!!! AGTATTTTGAATATAATCTA+AGG + chr5.2:23693021-23693040 None:intergenic 15.0%
!!! ATCATTTTGAATATAGTTTA+AGG + chr5.2:23692871-23692890 None:intergenic 15.0%
!!! TATTTCAAGTTTGATTTTTT+TGG + chr5.2:23692785-23692804 None:intergenic 15.0%
!!! TTTTTTAAAATATCGGATAT+CGG + chr5.2:23692963-23692982 None:intergenic 15.0%
!! AAAAAAACAGAGTAAAAACA+GGG + chr5.2:23691874-23691893 None:intergenic 20.0%
!! AAAAAAATTTAATCTCACCA+AGG - chr5.2:23692843-23692862 MS.gene027675:intron 20.0%
!! AAATGATTAAAAATGCTCAA+TGG - chr5.2:23694365-23694384 MS.gene027675:intron 20.0%
!! AAGTATTAAAGTGAATAAAG+TGG + chr5.2:23694596-23694615 None:intergenic 20.0%
!! ACTAACAATAAAATTGCAAT+TGG - chr5.2:23693873-23693892 MS.gene027675:intron 20.0%
!! AGTAAAAGATTCATATCAAA+GGG + chr5.2:23694273-23694292 None:intergenic 20.0%
!! CTTTATTCACTTTAATACTT+TGG - chr5.2:23694596-23694615 MS.gene027675:CDS 20.0%
!! GTACAACAATAAAAACTATT+AGG + chr5.2:23693210-23693229 None:intergenic 20.0%
!! TAGTAAAAGATTCATATCAA+AGG + chr5.2:23694274-23694293 None:intergenic 20.0%
!! TTCTATATCACAAAATTCAA+TGG + chr5.2:23694423-23694442 None:intergenic 20.0%
!!! AAAACATGGTGAAAATTTTA+TGG + chr5.2:23693545-23693564 None:intergenic 20.0%
!!! AAAGAATTTTTATCTTGGAA+TGG + chr5.2:23694483-23694502 None:intergenic 20.0%
!!! AAGGGTATTTACAAAATAAT+AGG + chr5.2:23694792-23694811 None:intergenic 20.0%
!!! AATATTGATGGATCAAATTA+AGG - chr5.2:23694215-23694234 MS.gene027675:intron 20.0%
!!! AATCAATTAAGTTGAAGTAA+TGG + chr5.2:23693405-23693424 None:intergenic 20.0%
!!! AGAATATTAGAAGAAGTATA+GGG - chr5.2:23694439-23694458 MS.gene027675:intron 20.0%
!!! ATATTGATGGATCAAATTAA+GGG - chr5.2:23694216-23694235 MS.gene027675:intron 20.0%
!!! TAGAATATTAGAAGAAGTAT+AGG - chr5.2:23694438-23694457 MS.gene027675:intron 20.0%
!!! TTTGATATGAATCTTTTACT+AGG - chr5.2:23694273-23694292 MS.gene027675:intron 20.0%
! AAAAAACAGAGTAAAAACAG+GGG + chr5.2:23691873-23691892 None:intergenic 25.0%
! AAACATGAACTTCAATTTCT+TGG + chr5.2:23692413-23692432 None:intergenic 25.0%
! AAATTGTGAATTCAAGACAA+GGG - chr5.2:23695106-23695125 MS.gene027675:intron 25.0%
! AAGGAGGAATAAATAATGTT+TGG - chr5.2:23695289-23695308 MS.gene027675:intron 25.0%
! AATCCAACAACTAATATTGA+TGG - chr5.2:23694203-23694222 MS.gene027675:intron 25.0%
! ACTCTTAAATGCACTATATT+TGG - chr5.2:23693481-23693500 MS.gene027675:intron 25.0%
! AGGAGGAATAAATAATGTTT+GGG - chr5.2:23695290-23695309 MS.gene027675:intron 25.0%
! ATGATGAACAAAACTACAAA+AGG + chr5.2:23694745-23694764 None:intergenic 25.0%
! ATTCTGCAATCACTATAAAT+AGG + chr5.2:23692667-23692686 None:intergenic 25.0%
! CAAAAAAACAGAGTAAAAAC+AGG + chr5.2:23691875-23691894 None:intergenic 25.0%
! TAGAATATAAACACATGTGT+CGG + chr5.2:23693110-23693129 None:intergenic 25.0%
! TAGATTCTTTACTTATTGGA+CGG - chr5.2:23693647-23693666 MS.gene027675:CDS 25.0%
! TCCAATAAGTAAAGAATCTA+GGG + chr5.2:23693647-23693666 None:intergenic 25.0%
! TCTTCAATAGAAACAAAGAA+AGG - chr5.2:23691583-23691602 MS.gene027675:CDS 25.0%
! TGTACAAGATTGTAAATGAT+TGG + chr5.2:23691649-23691668 None:intergenic 25.0%
! TTCTGCAATCACTATAAATA+GGG + chr5.2:23692666-23692685 None:intergenic 25.0%
! TTTGATCATCCTATGTTAAA+AGG - chr5.2:23692008-23692027 MS.gene027675:intron 25.0%
!! AACAATAAATCTAGAGTAGT+TGG - chr5.2:23692608-23692627 MS.gene027675:intron 25.0%
!! ATATAATCTAAGGCTACTTA+AGG + chr5.2:23693011-23693030 None:intergenic 25.0%
!! ATTTTTGTTCACACACTTAA+GGG - chr5.2:23695053-23695072 MS.gene027675:intron 25.0%
!! CAATAACACTTTTAAACCAA+AGG - chr5.2:23691738-23691757 MS.gene027675:CDS 25.0%
!! GAAGAGAATCTTTAAAAGAA+AGG + chr5.2:23694681-23694700 None:intergenic 25.0%
!! GAATATTAGAAGAAGTATAG+GGG - chr5.2:23694440-23694459 MS.gene027675:intron 25.0%
!!! AAGTCTTATAAAACGGATTA+AGG - chr5.2:23694108-23694127 MS.gene027675:intron 25.0%
!!! AGTCTTATAAAACGGATTAA+GGG - chr5.2:23694109-23694128 MS.gene027675:intron 25.0%
!!! ATTTTTGAGGAAGAAAAAAC+AGG + chr5.2:23691700-23691719 None:intergenic 25.0%
!!! CTTTGGTTTAAAAGTGTTAT+TGG + chr5.2:23691740-23691759 None:intergenic 25.0%
AAATCAATACTATGGAGCAA+AGG - chr5.2:23693255-23693274 MS.gene027675:CDS 30.0%
AAGTGTGTGAACAAAAATGA+TGG + chr5.2:23695051-23695070 None:intergenic 30.0%
AATTCCAATCAGAAGAACAA+CGG - chr5.2:23692258-23692277 MS.gene027675:intron 30.0%
ACAGAAGTCTTCAAATTTCA+TGG - chr5.2:23694299-23694318 MS.gene027675:intron 30.0%
ACCCTAGATTCTTTACTTAT+TGG - chr5.2:23693643-23693662 MS.gene027675:CDS 30.0%
ACCTGAATTGTCTTAATAGA+AGG + chr5.2:23691817-23691836 None:intergenic 30.0%
ACCTTCTATTAAGACAATTC+AGG - chr5.2:23691813-23691832 MS.gene027675:CDS 30.0%
ACTCAATTAGAATTTACCAG+TGG + chr5.2:23692041-23692060 None:intergenic 30.0%
AGAATTAGAAGCTCTTTGTT+GGG + chr5.2:23694710-23694729 None:intergenic 30.0%
AGTTTGAACAATTCTTCCTT+TGG + chr5.2:23691757-23691776 None:intergenic 30.0%
ATAGTGATTGCAGAATTTCA+TGG - chr5.2:23692671-23692690 MS.gene027675:intron 30.0%
ATCACTATAAATAGGGCAAA+AGG + chr5.2:23692659-23692678 None:intergenic 30.0%
ATTAAAAATGCTCAATGGTG+GGG - chr5.2:23694370-23694389 MS.gene027675:intron 30.0%
GAAATTGTGAATTCAAGACA+AGG - chr5.2:23695105-23695124 MS.gene027675:intron 30.0%
GAGGAATAAATAATGTTTGG+GGG - chr5.2:23695292-23695311 MS.gene027675:intron 30.0%
GATCCATCAATATTAGTTGT+TGG + chr5.2:23694209-23694228 None:intergenic 30.0%
GATTAAAAATGCTCAATGGT+GGG - chr5.2:23694369-23694388 MS.gene027675:intron 30.0%
GCCTAAAACTCATAACAAAA+GGG - chr5.2:23692174-23692193 MS.gene027675:intron 30.0%
GGAGGAATAAATAATGTTTG+GGG - chr5.2:23695291-23695310 MS.gene027675:intron 30.0%
GGTATGAAAATGAGTATTCA+TGG - chr5.2:23692578-23692597 MS.gene027675:intron 30.0%
GTCCAATAAGTAAAGAATCT+AGG + chr5.2:23693648-23693667 None:intergenic 30.0%
GTTCATTATTCGAATTCACT+AGG + chr5.2:23694637-23694656 None:intergenic 30.0%
TCAATGTGAACTACTTCAAA+CGG - chr5.2:23691558-23691577 MS.gene027675:CDS 30.0%
TCATACGCGCATATATATAT+CGG + chr5.2:23692925-23692944 None:intergenic 30.0%
TGATTAAAAATGCTCAATGG+TGG - chr5.2:23694368-23694387 MS.gene027675:intron 30.0%
TGCTACAATTTATTGTGTTC+TGG - chr5.2:23693840-23693859 MS.gene027675:intron 30.0%
TTAACTTACACTTCAAGCAA+AGG + chr5.2:23693736-23693755 None:intergenic 30.0%
TTCATACCAAACAAGACAAA+TGG + chr5.2:23692566-23692585 None:intergenic 30.0%
! AGGGTTGTTATCAATTTTTG+AGG + chr5.2:23691713-23691732 None:intergenic 30.0%
! CATGGTGAAAATTTTATGGT+AGG + chr5.2:23693541-23693560 None:intergenic 30.0%
! CATTTTTGTTCACACACTTA+AGG - chr5.2:23695052-23695071 MS.gene027675:intron 30.0%
! GAATATAGTTTAAGGTTCCT+TGG + chr5.2:23692863-23692882 None:intergenic 30.0%
! GCTTTGCAAGGAAAAATTTT+AGG - chr5.2:23692818-23692837 MS.gene027675:intron 30.0%
! GTCACACAAGTCTTATAAAA+CGG - chr5.2:23694101-23694120 MS.gene027675:intron 30.0%
! GTTTGTTACTTCCAAAACAA+TGG + chr5.2:23694399-23694418 None:intergenic 30.0%
! TAATGTCCATTTGTCTTGTT+TGG - chr5.2:23692557-23692576 MS.gene027675:intron 30.0%
!! GCTAGTTCTATCAATACATT+TGG - chr5.2:23692298-23692317 MS.gene027675:intron 30.0%
!! TAAAAGTGTTATTGGCAACA+GGG + chr5.2:23691732-23691751 None:intergenic 30.0%
!! TCCCTTTTGTTATGAGTTTT+AGG + chr5.2:23692178-23692197 None:intergenic 30.0%
!! TGTTTTGAGCATATACACTT+TGG - chr5.2:23694176-23694195 MS.gene027675:intron 30.0%
!! TTAAAAGTGTTATTGGCAAC+AGG + chr5.2:23691733-23691752 None:intergenic 30.0%
!! TTGATATTAGCTTGCTCATT+TGG - chr5.2:23693937-23693956 MS.gene027675:intron 30.0%
!! TTGGAAAAGCATCATACTTT+AGG - chr5.2:23695178-23695197 MS.gene027675:intron 30.0%
!!! AATTTTTTTCAGAGTCCTGA+CGG - chr5.2:23691945-23691964 MS.gene027675:intron 30.0%
!!! TTATTTTAGGATCCAAAGCA+TGG - chr5.2:23694979-23694998 MS.gene027675:intron 30.0%
AAAAGGAGGAGTAAGAAAAG+TGG + chr5.2:23694825-23694844 None:intergenic 35.0%
AAAAGTGGTGAATGTGTGAA+GGG + chr5.2:23694810-23694829 None:intergenic 35.0%
AAAGATTCATATCAAAGGGC+AGG + chr5.2:23694269-23694288 None:intergenic 35.0%
AACATAGGATGATCAAAAGC+TGG + chr5.2:23692005-23692024 None:intergenic 35.0%
AACGGAACAAGACATGTTAA+GGG - chr5.2:23692276-23692295 MS.gene027675:intron 35.0%
AAGATTCATATCAAAGGGCA+GGG + chr5.2:23694268-23694287 None:intergenic 35.0%
AATTAAGACGACGTGTTAGA+AGG - chr5.2:23692326-23692345 MS.gene027675:intron 35.0%
AATTGCTATGACATACAAGG+AGG - chr5.2:23695273-23695292 MS.gene027675:intron 35.0%
ACTATCACATTACCTTGTGT+AGG - chr5.2:23692750-23692769 MS.gene027675:intron 35.0%
AGAACCCTTAGATTTGACAA+GGG + chr5.2:23695240-23695259 None:intergenic 35.0%
AGGAAGAAAAAACAGGACAA+AGG + chr5.2:23691693-23691712 None:intergenic 35.0%
ATTAAGACGACGTGTTAGAA+GGG - chr5.2:23692327-23692346 MS.gene027675:intron 35.0%
CAATCTTCTATCCTTTAGGT+GGG + chr5.2:23694243-23694262 None:intergenic 35.0%
CAGAATTAGAAGCTCTTTGT+TGG + chr5.2:23694711-23694730 None:intergenic 35.0%
CATGCAAGTATGGTACAATT+TGG - chr5.2:23695078-23695097 MS.gene027675:intron 35.0%
CCAAATTGCTATGACATACA+AGG - chr5.2:23695270-23695289 MS.gene027675:intron 35.0%
CCTTGTATGTCATAGCAATT+TGG + chr5.2:23695273-23695292 None:intergenic 35.0%
CTATCACATTACCTTGTGTA+GGG - chr5.2:23692751-23692770 MS.gene027675:intron 35.0%
GAAAGGAAAATTCTCAAGCA+TGG - chr5.2:23691600-23691619 MS.gene027675:CDS 35.0%
GAATTTGCAAGTTGTGGATT+GGG - chr5.2:23695200-23695219 MS.gene027675:intron 35.0%
GATACCCTTGTCAAATCTAA+GGG - chr5.2:23695233-23695252 MS.gene027675:intron 35.0%
GGATCAATCTTCTATCCTTT+AGG + chr5.2:23694247-23694266 None:intergenic 35.0%
GGCCTAAAACTCATAACAAA+AGG - chr5.2:23692173-23692192 MS.gene027675:intron 35.0%
GTGACTGGAAATCAATACTA+TGG - chr5.2:23693247-23693266 MS.gene027675:CDS 35.0%
TAGAACCCTTAGATTTGACA+AGG + chr5.2:23695241-23695260 None:intergenic 35.0%
TCAATCTTCTATCCTTTAGG+TGG + chr5.2:23694244-23694263 None:intergenic 35.0%
TCACACACTTCAACTCAAAT+GGG - chr5.2:23695129-23695148 MS.gene027675:intron 35.0%
TGAATAGCATCATGTTAGCT+TGG + chr5.2:23694867-23694886 None:intergenic 35.0%
TGATACCCTTGTCAAATCTA+AGG - chr5.2:23695232-23695251 MS.gene027675:intron 35.0%
TGTAGACACCTGACATATAT+CGG + chr5.2:23693087-23693106 None:intergenic 35.0%
TTCATGGTCAAAAGCTTCAA+AGG - chr5.2:23694315-23694334 MS.gene027675:intron 35.0%
TTGAGCATATACACTTTGGT+TGG - chr5.2:23694180-23694199 MS.gene027675:intron 35.0%
! CTTTAGGAATTTGCAAGTTG+TGG - chr5.2:23695194-23695213 MS.gene027675:intron 35.0%
! GAAATTGGTGGCTTGAATTT+GGG - chr5.2:23695001-23695020 MS.gene027675:intron 35.0%
! GGTCTTTGTCCTTTTAACAT+AGG + chr5.2:23692020-23692039 None:intergenic 35.0%
! TTATTTTCTTGCATGTGTGC+AGG - chr5.2:23692138-23692157 MS.gene027675:intron 35.0%
!! GGGAATTACTTTTACTATGG+TGG - chr5.2:23695312-23695331 MS.gene027675:intron 35.0%
!! TATTAGCTTGCTCATTTGGA+AGG - chr5.2:23693941-23693960 MS.gene027675:intron 35.0%
!! TGGGGGAATTACTTTTACTA+TGG - chr5.2:23695309-23695328 MS.gene027675:intron 35.0%
!!! TTATGAGTTTTAGGCCTTTC+TGG + chr5.2:23692169-23692188 None:intergenic 35.0%
AAATTAAGGGTCCCACCTAA+AGG - chr5.2:23694229-23694248 MS.gene027675:intron 40.0%
AACCAGAAATGACCCACATT+TGG + chr5.2:23693336-23693355 None:intergenic 40.0%
AAGTGAAATGGGTCAAAAGG+AGG + chr5.2:23694839-23694858 None:intergenic 40.0%
AATTCAGCTTGTCCCAAATG+TGG - chr5.2:23693320-23693339 MS.gene027675:intron 40.0%
ACCAGAAATGACCCACATTT+GGG + chr5.2:23693335-23693354 None:intergenic 40.0%
ACCTGACATATATCGGATGT+CGG + chr5.2:23693080-23693099 None:intergenic 40.0%
ACTTCAACTCAAATGGGTAG+TGG - chr5.2:23695135-23695154 MS.gene027675:intron 40.0%
AGAAGGGACACAAATAGCAA+TGG - chr5.2:23692343-23692362 MS.gene027675:intron 40.0%
AGGATCCAAAGCATGGAAAT+TGG - chr5.2:23694986-23695005 MS.gene027675:intron 40.0%
AGTGATGCATATCAAGCAAC+TGG - chr5.2:23693816-23693835 MS.gene027675:intron 40.0%
ATAGTGACACTTCAGAGTGA+AGG - chr5.2:23693049-23693068 MS.gene027675:CDS 40.0%
ATCCAAAGCATGGAAATTGG+TGG - chr5.2:23694989-23695008 MS.gene027675:intron 40.0%
ATTCAGCTTGTCCCAAATGT+GGG - chr5.2:23693321-23693340 MS.gene027675:intron 40.0%
ATTGTTGTACAGCATGCAGT+TGG - chr5.2:23693220-23693239 MS.gene027675:intron 40.0%
CAAAACCTTCTCCAGCAAAA+TGG + chr5.2:23695161-23695180 None:intergenic 40.0%
CAACGGAACAAGACATGTTA+AGG - chr5.2:23692275-23692294 MS.gene027675:intron 40.0%
CACAAATAGCAATGGACATG+AGG - chr5.2:23692351-23692370 MS.gene027675:intron 40.0%
CATTCTATGATATCACCGTC+AGG + chr5.2:23691963-23691982 None:intergenic 40.0%
CTCCAACTTCTTCATACACT+GGG - chr5.2:23693907-23693926 MS.gene027675:intron 40.0%
CTGATTGGAATTGTTCCTTC+CGG + chr5.2:23692250-23692269 None:intergenic 40.0%
CTTAAGGGATCATGCAAGTA+TGG - chr5.2:23695068-23695087 MS.gene027675:intron 40.0%
GAAAAGTGGTGAATGTGTGA+AGG + chr5.2:23694811-23694830 None:intergenic 40.0%
GAAGCTCTTTGTTGGGAAAA+AGG + chr5.2:23694703-23694722 None:intergenic 40.0%
GCAAGTATGGTACAATTTGG+TGG - chr5.2:23695081-23695100 MS.gene027675:intron 40.0%
GGAATTTGCAAGTTGTGGAT+TGG - chr5.2:23695199-23695218 MS.gene027675:intron 40.0%
GGACATTTCACATTTCTTCC+TGG + chr5.2:23695339-23695358 None:intergenic 40.0%
GGGACAAGCTGAATTCATAT+TGG + chr5.2:23693315-23693334 None:intergenic 40.0%
GTCACACACTTCAACTCAAA+TGG - chr5.2:23695128-23695147 MS.gene027675:intron 40.0%
GTTAAAAGGACAAAGACCAC+TGG - chr5.2:23692022-23692041 MS.gene027675:intron 40.0%
TCCAACTTCTTCATACACTG+GGG - chr5.2:23693908-23693927 MS.gene027675:intron 40.0%
TCTCCAACTTCTTCATACAC+TGG - chr5.2:23693906-23693925 MS.gene027675:intron 40.0%
TGAATTTGGGTCCGGAATAT+TGG - chr5.2:23695014-23695033 MS.gene027675:intron 40.0%
TGATCACTGACACTTCAGAT+AGG - chr5.2:23692887-23692906 MS.gene027675:intron 40.0%
TGGTTAGATTTCCCTACACA+AGG + chr5.2:23692765-23692784 None:intergenic 40.0%
TGTTCCGTTGTTCTTCTGAT+TGG + chr5.2:23692265-23692284 None:intergenic 40.0%
! CATTTTGCTGGAGAAGGTTT+TGG - chr5.2:23695159-23695178 MS.gene027675:intron 40.0%
! CTGAAGTGTCACTATTGGTA+TGG + chr5.2:23693044-23693063 None:intergenic 40.0%
! GGAAATTGGTGGCTTGAATT+TGG - chr5.2:23695000-23695019 MS.gene027675:intron 40.0%
! GTCAAATCTAAGGGTTCTAG+CGG - chr5.2:23695242-23695261 MS.gene027675:intron 40.0%
! TAGCATCATGTTAGCTTGGT+TGG + chr5.2:23694863-23694882 None:intergenic 40.0%
! TTTTCAGTCATGGAGCTTGT+CGG - chr5.2:23692213-23692232 MS.gene027675:intron 40.0%
!! ATATTGGTTTGCTACACGTG+GGG + chr5.2:23693299-23693318 None:intergenic 40.0%
!! CATATTGGTTTGCTACACGT+GGG + chr5.2:23693300-23693319 None:intergenic 40.0%
!! TCACTCTGAAGTGTCACTAT+TGG + chr5.2:23693049-23693068 None:intergenic 40.0%
!! TCATATTGGTTTGCTACACG+TGG + chr5.2:23693301-23693320 None:intergenic 40.0%
!! TGGGTCATTTCTGGTTCATT+TGG - chr5.2:23693340-23693359 MS.gene027675:intron 40.0%
!!! TACTTTTACTATGGTGGACC+AGG - chr5.2:23695318-23695337 MS.gene027675:intron 40.0%
AAAGGCCAGCATAAACGTGT+GGG - chr5.2:23693273-23693292 MS.gene027675:intron 45.0%
AAGCTAGCATGAGCTTTGCA+AGG - chr5.2:23692806-23692825 MS.gene027675:intron 45.0%
ACCGACATCCGATATATGTC+AGG - chr5.2:23693076-23693095 MS.gene027675:intron 45.0%
AGCCACCAATTTCCATGCTT+TGG + chr5.2:23694994-23695013 None:intergenic 45.0%
AGCTTGGTTGGCAAGTGAAA+TGG + chr5.2:23694851-23694870 None:intergenic 45.0%
CAACTTCTTCATACACTGGG+GGG - chr5.2:23693910-23693929 MS.gene027675:intron 45.0%
CATGCAGTTGGATATGTGAC+TGG - chr5.2:23693232-23693251 MS.gene027675:intron 45.0%
CCAACTTCTTCATACACTGG+GGG - chr5.2:23693909-23693928 MS.gene027675:intron 45.0%
CCAGTACCCTACCAATATTC+CGG + chr5.2:23695028-23695047 None:intergenic 45.0%
GATCTCAACACCATTGAAGC+TGG - chr5.2:23693367-23693386 MS.gene027675:intron 45.0%
GCTTGGTTGGCAAGTGAAAT+GGG + chr5.2:23694850-23694869 None:intergenic 45.0%
GGCAAGTGAAATGGGTCAAA+AGG + chr5.2:23694842-23694861 None:intergenic 45.0%
TCAACACCATTGAAGCTGGT+TGG - chr5.2:23693371-23693390 MS.gene027675:intron 45.0%
TCCCAAATGTGGGTCATTTC+TGG - chr5.2:23693331-23693350 MS.gene027675:intron 45.0%
TTGGGTCCGGAATATTGGTA+GGG - chr5.2:23695019-23695038 MS.gene027675:intron 45.0%
TTTCAGTCATGGAGCTTGTC+GGG - chr5.2:23692214-23692233 MS.gene027675:intron 45.0%
TTTGGGTCCGGAATATTGGT+AGG - chr5.2:23695018-23695037 MS.gene027675:intron 45.0%
! CGAGCGAGAATTTTCAGTCA+TGG - chr5.2:23692203-23692222 MS.gene027675:intron 45.0%
!!! TGAGTTTTAGGCCTTTCTGG+AGG + chr5.2:23692166-23692185 None:intergenic 45.0%
!!! TTATTTTTTTATTTTTATAG+TGG - chr5.2:23694039-23694058 MS.gene027675:intron 5.0%
AACTGTCCCCATAGAGCTCA+GGG + chr5.2:23693623-23693642 None:intergenic 50.0%
CAAAGGCCAGCATAAACGTG+TGG - chr5.2:23693272-23693291 MS.gene027675:intron 50.0%
CCCCCAGTGTATGAAGAAGT+TGG + chr5.2:23693912-23693931 None:intergenic 50.0%
CCGGAATATTGGTAGGGTAC+TGG - chr5.2:23695025-23695044 MS.gene027675:intron 50.0%
CTTGTCGGGTGAATCATGTC+CGG - chr5.2:23692228-23692247 MS.gene027675:intron 50.0%
TAACTGTCCCCATAGAGCTC+AGG + chr5.2:23693624-23693643 None:intergenic 50.0%
TGGTGGCTTGAATTTGGGTC+CGG - chr5.2:23695006-23695025 MS.gene027675:intron 50.0%
! TGGTGGGGTCTCCATTGTTT+TGG - chr5.2:23694385-23694404 MS.gene027675:intron 50.0%
!! AGTGGCCATTTTGCTGGAGA+AGG - chr5.2:23695153-23695172 MS.gene027675:intron 50.0%
!! ATGGGTAGTGGCCATTTTGC+TGG - chr5.2:23695147-23695166 MS.gene027675:intron 50.0%
AGGTCAGCCCTGAGCTCTAT+GGG - chr5.2:23693613-23693632 MS.gene027675:CDS 55.0%
CACCATTGAAGCTGGTTGGC+AGG - chr5.2:23693375-23693394 MS.gene027675:intron 55.0%
GTGTGCAGGATCCTCCAGAA+AGG - chr5.2:23692152-23692171 MS.gene027675:intron 55.0%
TCGGGTGAATCATGTCCGGA+AGG - chr5.2:23692232-23692251 MS.gene027675:intron 55.0%
TGCCTGCCAACCAGCTTCAA+TGG + chr5.2:23693380-23693399 None:intergenic 55.0%
CAGGTCAGCCCTGAGCTCTA+TGG - chr5.2:23693612-23693631 MS.gene027675:CDS 60.0%
GGTCAGCCCTGAGCTCTATG+GGG - chr5.2:23693614-23693633 MS.gene027675:CDS 60.0%
TGGGGCCCACACGTTTATGC+TGG + chr5.2:23693281-23693300 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr5.2 gene 23691539 23695362 23691539 ID=MS.gene027675
chr5.2 mRNA 23691539 23695362 23691539 ID=MS.gene027675.t1;Parent=MS.gene027675
chr5.2 exon 23695339 23695362 23695339 ID=MS.gene027675.t1.exon1;Parent=MS.gene027675.t1
chr5.2 CDS 23695339 23695362 23695339 ID=cds.MS.gene027675.t1;Parent=MS.gene027675.t1
chr5.2 exon 23694858 23694944 23694858 ID=MS.gene027675.t1.exon2;Parent=MS.gene027675.t1
chr5.2 CDS 23694858 23694944 23694858 ID=cds.MS.gene027675.t1;Parent=MS.gene027675.t1
chr5.2 exon 23694529 23694741 23694529 ID=MS.gene027675.t1.exon3;Parent=MS.gene027675.t1
chr5.2 CDS 23694529 23694741 23694529 ID=cds.MS.gene027675.t1;Parent=MS.gene027675.t1
chr5.2 exon 23693505 23693669 23693505 ID=MS.gene027675.t1.exon4;Parent=MS.gene027675.t1
chr5.2 CDS 23693505 23693669 23693505 ID=cds.MS.gene027675.t1;Parent=MS.gene027675.t1
chr5.2 exon 23693233 23693286 23693233 ID=MS.gene027675.t1.exon5;Parent=MS.gene027675.t1
chr5.2 CDS 23693233 23693286 23693233 ID=cds.MS.gene027675.t1;Parent=MS.gene027675.t1
chr5.2 exon 23692939 23693085 23692939 ID=MS.gene027675.t1.exon6;Parent=MS.gene027675.t1
chr5.2 CDS 23692939 23693085 23692939 ID=cds.MS.gene027675.t1;Parent=MS.gene027675.t1
chr5.2 exon 23691539 23691913 23691539 ID=MS.gene027675.t1.exon7;Parent=MS.gene027675.t1
chr5.2 CDS 23691539 23691913 23691539 ID=cds.MS.gene027675.t1;Parent=MS.gene027675.t1
Gene Sequence

>MS.gene027675

ATGGAAGAAGAAGACAAGATCAATGTGAACTACTTCAAACGGATTCTTCAATAGAAACAAAGAAAGGAAAATTCTCAAGCATGGATTTTAGCTTGTGTTTGACTTCTCCAATCATTTACAATCTTGTACATTTTCTTCTTGTTTTTTCTTTCCTTTGTCCTGTTTTTTCTTCCTCAAAAATTGATAACAACCCTGTTGCCAATAACACTTTTAAACCAAAGGAAGAATTGTTCAAACTAAACATCATAAGAAATCGACTTCAACAGATCAATAAACCTTCTATTAAGACAATTCAGGTATGTTAAAGTTTCATGCTTTTGTTTTTTCACTTCCCCTGTTTTTACTCTGTTTTTTTGTTCTGTTTTCTGCTCTGTTTTATCATAATTTTATGATATATATTTTTTGTAATTTTTTTCAGAGTCCTGACGGTGATATCATAGAATGTGTTGCGTCTCATCAACAACCAGCTTTTGATCATCCTATGTTAAAAGGACAAAGACCACTGGTAAATTCTAATTGAGTCAAAAACAATCTAAAGATTTTTATTATATGTATAAGTTAAGATATAAGGGAAATATTTATTTAAAAAAAATGTAATTTTATTTTCTTGCATGTGTGCAGGATCCTCCAGAAAGGCCTAAAACTCATAACAAAAGGGATGTGTCGAGCGAGAATTTTCAGTCATGGAGCTTGTCGGGTGAATCATGTCCGGAAGGAACAATTCCAATCAGAAGAACAACGGAACAAGACATGTTAAGGGCTAGTTCTATCAATACATTTGGAAGAAAATTAAGACGACGTGTTAGAAGGGACACAAATAGCAATGGACATGAGGTATATGCAAATGCAATGCAGCTTCTGAAAATTCACACCAAGAAATTGAAGTTCATGTTTGTTTTTTAATTTTATTAAATTTTTTTGATTTATCAAATGAAGCAAGACATTAAGAAACAAATATACTGTTTTGATTTTCATTCTTTGCTTATGTTTTTTTTTTCTTCTTCTTTTTTTCATGTTTTAATGTCCATTTGTCTTGTTTGGTATGAAAATGAGTATTCATGGAAGCAAGAACAATAAATCTAGAGTAGTTGGAATTTCATTGATAATGAAACTTCAACCTTTTGCCCTATTTATAGTGATTGCAGAATTTCATGGTTCTTCAGTTAGTTAATGTTTCACTTAATGATGTTTCTATTCTTGTGTGTGCTGCAACTATCACATTACCTTGTGTAGGGAAATCTAACCAAAAAAATCAAACTTGAAATATAAGCTAGCATGAGCTTTGCAAGGAAAAATTTTAGGTAAAAAAAATTTAATCTCACCAAGGAACCTTAAACTATATTCAAAATGATCACTGACACTTCAGATAGGCGTCTCAGATATCCGATATATATATGCGCGTATGACACTAACACATGTTTCCGATATCCGATATTTTAAAAAAAAATGTCTTATTTCAAATTTAATTTCCTTAAGTAGCCTTAGATTATATTCAAAATACTCCATACCAATAGTGACACTTCAGAGTGAAGGTGTTACCGACATCCGATATATGTCAGGTGTCTACACCGACACATGTGTTTATATTCTATCACTTCAATTTCCTCAAATTTTTATTGATGTATACATATCAATGTGTGTATAGTATTTGTATCATAGTAGAAATCGCCTAATAGTTTTTATTGTTGTACAGCATGCAGTTGGATATGTGACTGGAAATCAATACTATGGAGCAAAGGCCAGCATAAACGTGTGGGCCCCACGTGTAGCAAACCAATATGAATTCAGCTTGTCCCAAATGTGGGTCATTTCTGGTTCATTTGGAGATGATCTCAACACCATTGAAGCTGGTTGGCAGGCAAGCCATTACTTCAACTTAATTGATTCTTCATTTGTTGAAACACACTTTTTCTTTATTTCGATATTTCAATGATTCTCTCTTACTCTTAAATGCACTATATTTGGTTAGCATTCAAAGACAGTTAGCATTGCTCAACTACCTACCATAAAATTTTCACCATGTTTTTAATTTTTGTATCTTAGCCAAATAAACTAATTTAAATTACTTTTTTTCAGGTCAGCCCTGAGCTCTATGGGGACAGTTACCCTAGATTCTTTACTTATTGGACGGTAAGTATAAAACTCAATAAAGAAAAGGGAGAGAAGTTATATACTATAAATACATAATTATAAACCTTTGCTTGAAGTGTAAGTTAAGATAAGAAGACATTCAATAATGAAAATAAATAATAAAAAAATATTGATTATTATTTACAGAGTGATGCATATCAAGCAACTGGATGCTACAATTTATTGTGTTCTGGCTTTGTTCAAACTAACAATAAAATTGCAATTGGTGCTGCAATCTCTCCAACTTCTTCATACACTGGGGGGCAATTTGATATTAGCTTGCTCATTTGGAAGGTAATTTTTATTTTGTGCTCTATAAGAAAATTTACCTTAGAAAATTATTGACTATTTATAGTACAAGTGTCCAATTTTATTTTTTTATTTTTATAGTGGATAATTTAGTTTTACTATTGATTGGAAAAGTTAAACTTTGTCACACAAGTCTTATAAAACGGATTAAGGGTTTATATTACTTAATTCAATTGTATTCTATATAGTTTATAAATCTGTTTTGAGCATATACACTTTGGTTGGAATCCAACAACTAATATTGATGGATCAAATTAAGGGTCCCACCTAAAGGATAGAAGATTGATCCCTGCCCTTTGATATGAATCTTTTACTAGGTTCACAGAAGTCTTCAAATTTCATGGTCAAAAGCTTCAAAGGAACTCAAAAACAAATATAAATAAATAAAAATGATTAAAAATGCTCAATGGTGGGGTCTCCATTGTTTTGGAAGTAACAAACACCATTGAATTTTGTGATATAGAATATTAGAAGAAGTATAGGGGAAGTTATTTTATGTTTTCCATTCCAAGATAAAAATTCTTTTTTATAAAATGAAAATTTTGAAAAAAGACAAAAATGAAAATAGTGCATGCAAAGTGTTGTACAATGTCTAGTCTTAGTTAACAACATGCACCACTTTATTCACTTTAATACTTTGGGACATTACACGCATGCCTAGTGAATTCGAATAATGAACTGTATTTCTCTTATATGTTTTCCTTTCTTTTAAAGATTCTCTTCCTTTTTCCCAACAAAGAGCTTCTAATTCTGAAACTCTTCAACCTTTTGTAGTTTTGTTCATCATTTTATTATTATTTTAACAAAATTTCCTATTATTTTGTAAATACCCTTCACACATTCACCACTTTTCTTACTCCTCCTTTTGACCCATTTCACTTGCCAACCAAGCTAACATGATGCTATTCATAATTATGTCTAGCTTTAATTGAAATTTTTTGCTTTGTTGCAAAATACAAAAATAACAAAAGGAGTGTCATTGAAAGTTTTGTTTTACTATTTTATTTTAGGATCCAAAGCATGGAAATTGGTGGCTTGAATTTGGGTCCGGAATATTGGTAGGGTACTGGCCATCATTTTTGTTCACACACTTAAGGGATCATGCAAGTATGGTACAATTTGGTGGAGAAATTGTGAATTCAAGACAAGGGTCACACACTTCAACTCAAATGGGTAGTGGCCATTTTGCTGGAGAAGGTTTTGGAAAAGCATCATACTTTAGGAATTTGCAAGTTGTGGATTGGGATAACAATTTGATACCCTTGTCAAATCTAAGGGTTCTAGCGGATCATCCAAATTGCTATGACATACAAGGAGGAATAAATAATGTTTGGGGGAATTACTTTTACTATGGTGGACCAGGAAGAAATGTGAAATGTCCCTAA
Protein sequence

>MS.gene027675.t1

MEEEDKINSPDGDIIECVASHQQPAFDHPMLKGQRPLDPPERPKTHNKRDVSSENFQSWSLSGESCPEGTIPIRRTTEQDMLRASSINTFGRKLRRRVRRDTNSNGHEHAVGYVTGNQYYGAKASINVWAPRVANQYEFSLSQMWVISGSFGDDLNTIEAGWQVSPELYGDSYPRFFTYWTSDAYQATGCYNLLCSGFVQTNNKIAIGAAISPTSSYTGGQFDISLLIWKDPKHGNWWLEFGSGILVGYWPSFLFTHLRDHASMVQFGGEIVNSRQGSHTSTQMGSGHFAGEGFGKASYFRNLQVVDWDNNLIPLSNLRVLADHPNCYDIQGGINNVWGNYFYYGGPGRNVKCP