Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene75299.t1 | XP_013462006.1 | 99.3 | 983 | 7 | 0 | 1 | 983 | 1 | 983 | 0.00E+00 | 1926.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene75299.t1 | Q5ZL00 | 29.9 | 1039 | 600 | 30 | 13 | 983 | 5 | 983 | 1.8e-107 | 392.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene75299.t1 | A0A072V2Z0 | 99.3 | 983 | 7 | 0 | 1 | 983 | 1 | 983 | 0.0e+00 | 1926.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049180 | MS.gene75299 | 0.83805 | 3.62E-57 | -1.69E-46 |
| MS.gene050818 | MS.gene75299 | 0.819497 | 1.13E-52 | -1.69E-46 |
| MS.gene050894 | MS.gene75299 | 0.821818 | 3.30E-53 | -1.69E-46 |
| MS.gene052772 | MS.gene75299 | 0.80502 | 1.63E-49 | -1.69E-46 |
| MS.gene054585 | MS.gene75299 | 0.803304 | 3.72E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene75299.t1 | MTR_3g110140 | 99.288 | 983 | 7 | 0 | 1 | 983 | 1 | 983 | 0.0 | 2006 |
| MS.gene75299.t1 | MTR_3g110090 | 99.172 | 845 | 7 | 0 | 139 | 983 | 5 | 849 | 0.0 | 1725 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene75299.t1 | AT5G11560 | 66.633 | 983 | 325 | 2 | 3 | 983 | 1 | 982 | 0.0 | 1384 |
Find 210 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATCCATCTCTTCTTGTAAT+TGG | 0.112565 | 3.3:-90510068 | MS.gene75299:CDS |
| GCACTTCCCTTTGCAACTTC+TGG | 0.129619 | 3.3:-90511369 | MS.gene75299:CDS |
| GGGTGTCTTCATGCCATTTC+TGG | 0.139632 | 3.3:-90511656 | MS.gene75299:CDS |
| ATGAATACTGCTTTGTATTC+AGG | 0.210486 | 3.3:-90509731 | MS.gene75299:CDS |
| CACAGGATAACAAAGATATT+TGG | 0.229804 | 3.3:-90508537 | MS.gene75299:intron |
| GCTTTGTATTCAGGGACTTA+TGG | 0.251696 | 3.3:-90509722 | MS.gene75299:CDS |
| CCGATTTCCCCACTGGCTTT+TGG | 0.254400 | 3.3:+90509004 | None:intergenic |
| CGCCATGGCCATGGCGATTA+GGG | 0.259898 | 3.3:-90514601 | None:intergenic |
| TTACTCAGATTGCTCCTTCT+AGG | 0.262009 | 3.3:-90507006 | MS.gene75299:CDS |
| TCTCAATATTTCCTCTTTGA+TGG | 0.265891 | 3.3:+90510941 | None:intergenic |
| TGTAGGTATTTAGTGAAAAC+TGG | 0.270607 | 3.3:-90508795 | MS.gene75299:intron |
| TTCGCCCCGTCTTCTGAGTA+TGG | 0.273204 | 3.3:+90514046 | None:intergenic |
| GCAGTTTGGAGGCATGTTCT+TGG | 0.284280 | 3.3:-90513639 | MS.gene75299:intron |
| TGCAGGCACCAACAGTATAT+TGG | 0.286685 | 3.3:-90514090 | MS.gene75299:intron |
| TCAATAGCTTCAGGAGTTCT+TGG | 0.297756 | 3.3:+90509861 | None:intergenic |
| GGTTTGGGAGTCTTCCCTTC+AGG | 0.301565 | 3.3:-90512690 | MS.gene75299:CDS |
| ATTTGTTACTTATGTATTAT+CGG | 0.302509 | 3.3:-90506909 | MS.gene75299:CDS |
| CACTTCCCTTTGCAACTTCT+GGG | 0.302922 | 3.3:-90511368 | MS.gene75299:CDS |
| TCGCCATGGCCATGGCGATT+AGG | 0.319893 | 3.3:-90514602 | None:intergenic |
| TACCTGACGGGCAGATGGTT+TGG | 0.325931 | 3.3:-90512706 | MS.gene75299:CDS |
| TGAGGTCTGAAACTTGCTTC+TGG | 0.333539 | 3.3:+90511247 | None:intergenic |
| ACCTCTAAGCAGCTTCTTAT+CGG | 0.334847 | 3.3:-90508376 | MS.gene75299:CDS |
| TCCGATAAGAAGCTGCTTAG+AGG | 0.344251 | 3.3:+90508375 | None:intergenic |
| ACCTGACGGGCAGATGGTTT+GGG | 0.349641 | 3.3:-90512705 | MS.gene75299:CDS |
| CATCAGGAGACTGTATAATA+TGG | 0.362998 | 3.3:+90511484 | None:intergenic |
| CCGGGGATGGACGCATAGTT+TGG | 0.377141 | 3.3:-90510193 | MS.gene75299:CDS |
| GCATAGACGGTGAAGTTCTC+TGG | 0.380569 | 3.3:-90511634 | MS.gene75299:CDS |
| GTTTGGGAGTCTTCCCTTCA+GGG | 0.382494 | 3.3:-90512689 | MS.gene75299:CDS |
| AGTAACAGTGCCTGCCAAAT+TGG | 0.383144 | 3.3:-90507071 | MS.gene75299:CDS |
| TGCTGTTCCGATTTCCCCAC+TGG | 0.385316 | 3.3:+90508997 | None:intergenic |
| GGAAAGATCTAGAAGAGAAA+TGG | 0.389058 | 3.3:-90506883 | MS.gene75299:CDS |
| AGGCTGCTGTATTGTCGATT+TGG | 0.394539 | 3.3:+90511100 | None:intergenic |
| CCTGATGTGATTTATGTAGC+TGG | 0.397420 | 3.3:-90511468 | MS.gene75299:CDS |
| CAGCTTCTTATCGGAACAAT+TGG | 0.398831 | 3.3:-90508367 | MS.gene75299:CDS |
| CCAAAAGCCAGTGGGGAAAT+CGG | 0.402007 | 3.3:-90509004 | MS.gene75299:CDS |
| ATCCATCTCTTCTTGTAATT+GGG | 0.402204 | 3.3:-90510067 | MS.gene75299:CDS |
| AACAGTCCTGGAAGCTTTGA+TGG | 0.403066 | 3.3:+90511192 | None:intergenic |
| GAACCTCTTCGAATGGCTTA+AGG | 0.405315 | 3.3:-90510716 | MS.gene75299:intron |
| TGATAAATGTTAAGCCCAAC+TGG | 0.408225 | 3.3:+90510125 | None:intergenic |
| CTGTAAAGGATGTTAATGAT+TGG | 0.408833 | 3.3:-90510999 | MS.gene75299:CDS |
| GAGGGATGTAGACTCCAATT+TGG | 0.409191 | 3.3:+90507057 | None:intergenic |
| GCAGGCACCAACAGTATATT+GGG | 0.409945 | 3.3:-90514089 | MS.gene75299:intron |
| TTCAGAATCTCAATAGCTTC+AGG | 0.410731 | 3.3:+90509852 | None:intergenic |
| TTAATTAAAGTTACAAATGA+AGG | 0.411447 | 3.3:-90511141 | MS.gene75299:CDS |
| CATGACCCACCACGGTTGCC+AGG | 0.412068 | 3.3:-90508909 | MS.gene75299:CDS |
| TGTTCAGTTGAATCAGTATA+AGG | 0.412583 | 3.3:+90509930 | None:intergenic |
| TTCAACAAGGAGAAATTGTC+TGG | 0.414197 | 3.3:-90510831 | MS.gene75299:CDS |
| ACTGATAATGGTGTTATTAG+AGG | 0.418692 | 3.3:-90509792 | MS.gene75299:CDS |
| TAACTTTAATTAAGAGAACT+TGG | 0.420091 | 3.3:+90511151 | None:intergenic |
| TATCGGAACAATTGGTGATC+AGG | 0.426179 | 3.3:-90508359 | MS.gene75299:intron |
| TCCCAAACCATCTGCCCGTC+AGG | 0.426869 | 3.3:+90512704 | None:intergenic |
| ATATTACCATCAAAGCTTCC+AGG | 0.429030 | 3.3:-90511198 | MS.gene75299:CDS |
| GATTGGTTAAAGAGAGGAAA+AGG | 0.437129 | 3.3:+90514562 | None:intergenic |
| TACTCGGTTGAGACTGATAA+TGG | 0.442224 | 3.3:-90509804 | MS.gene75299:CDS |
| GTAAAGAGAAGAAGCGAGAT+TGG | 0.443952 | 3.3:+90514545 | None:intergenic |
| AACACCAGAGGAGGCAACTT+TGG | 0.447248 | 3.3:-90508975 | MS.gene75299:CDS |
| CGAAGATCAAGTTGGTCTCA+TGG | 0.448704 | 3.3:-90514523 | MS.gene75299:CDS |
| TCATGGGTTCAGAGCATTGA+TGG | 0.450368 | 3.3:-90510881 | MS.gene75299:CDS |
| CAATAGCTTCAGGAGTTCTT+GGG | 0.452351 | 3.3:+90509862 | None:intergenic |
| GATATTTGGAAGTTTGTACT+TGG | 0.455264 | 3.3:-90508523 | MS.gene75299:CDS |
| GGCACCAATGATGTTGTTGA+TGG | 0.456758 | 3.3:-90513618 | MS.gene75299:CDS |
| AGCAGTTGAAGTCACTTCAA+TGG | 0.456893 | 3.3:+90508408 | None:intergenic |
| TGAATACTGCTTTGTATTCA+GGG | 0.457304 | 3.3:-90509730 | MS.gene75299:CDS |
| GTCATCACCCTTTCCTCTGA+TGG | 0.458294 | 3.3:-90512752 | MS.gene75299:CDS |
| GACCTCATCAAGGATTCATC+TGG | 0.464150 | 3.3:-90511231 | MS.gene75299:CDS |
| ACATCCCTCGTCTTTGCCTA+TGG | 0.465598 | 3.3:-90507043 | MS.gene75299:CDS |
| ATAACCAAAGTTGCCTCCTC+TGG | 0.467336 | 3.3:+90508971 | None:intergenic |
| TCTTCTTTCTCAGCTTGTGA+GGG | 0.470188 | 3.3:+90508166 | None:intergenic |
| AAAATGACTCGTGATCATAA+TGG | 0.472672 | 3.3:-90510272 | MS.gene75299:CDS |
| GTCAGAACTACCTGTGGAAA+AGG | 0.473051 | 3.3:-90510767 | MS.gene75299:CDS |
| TGAAGGTGAGTTGGTGGCGC+TGG | 0.474644 | 3.3:-90511124 | MS.gene75299:CDS |
| AGTGAATCGTAAGTCCTAGA+AGG | 0.475966 | 3.3:+90506992 | None:intergenic |
| TTCACTACCGATCATTTCTC+AGG | 0.480117 | 3.3:-90508122 | MS.gene75299:intron |
| TAAAATTCAGCTCTCTGTAA+AGG | 0.484414 | 3.3:-90511013 | MS.gene75299:CDS |
| ACACATTCCCTAAAAGTAGA+AGG | 0.484558 | 3.3:-90507106 | MS.gene75299:CDS |
| CAAAAGCTTACAGCATGAAC+AGG | 0.485245 | 3.3:+90508884 | None:intergenic |
| AGGTGATAAGTTTGTGGTGT+TGG | 0.485329 | 3.3:-90511328 | MS.gene75299:CDS |
| TTTGCTTTGCATACCGGGGA+TGG | 0.485539 | 3.3:-90510206 | MS.gene75299:CDS |
| TGCTTTGCTGAAGGAAAACT+TGG | 0.490579 | 3.3:-90510971 | MS.gene75299:CDS |
| GCTTAACATTTATCAGTGGC+AGG | 0.492266 | 3.3:-90510117 | MS.gene75299:CDS |
| TTCACCGTCTATGCCAGAAA+TGG | 0.492390 | 3.3:+90511643 | None:intergenic |
| AATCCCATCAACAACATCAT+TGG | 0.493058 | 3.3:+90513614 | None:intergenic |
| CTTATAGTACTTACAAGGGC+AGG | 0.493287 | 3.3:-90510236 | MS.gene75299:CDS |
| GGGGAATCATTATCAGTCTC+AGG | 0.493338 | 3.3:-90511348 | MS.gene75299:CDS |
| GTCAGAACAGATAGATCTCA+TGG | 0.496977 | 3.3:-90510898 | MS.gene75299:CDS |
| TGAAGTGACTTCAACTGCTA+AGG | 0.499221 | 3.3:-90508404 | MS.gene75299:CDS |
| AGTTGCTTATAGTACTTACA+AGG | 0.500412 | 3.3:-90510241 | MS.gene75299:CDS |
| AACCCTAATCGCCATGGCCA+TGG | 0.501028 | 3.3:+90514599 | None:intergenic |
| AAATAGCTATTCAAAAGCTT+AGG | 0.505306 | 3.3:-90510316 | MS.gene75299:CDS |
| TTCTTCTTTCTCAGCTTGTG+AGG | 0.507689 | 3.3:+90508165 | None:intergenic |
| TATACTTCCATCAGAGGAAA+GGG | 0.508495 | 3.3:+90512745 | None:intergenic |
| TCACCTTCCCAATATACTGT+TGG | 0.508929 | 3.3:+90514082 | None:intergenic |
| AGTTACAAATGAAGGTGAGT+TGG | 0.509444 | 3.3:-90511133 | MS.gene75299:CDS |
| TTGATTCCTTTGATCCCTGA+AGG | 0.511496 | 3.3:+90512675 | None:intergenic |
| TCGAGGTCTATGACCAGTCT+CGG | 0.512629 | 3.3:-90508720 | MS.gene75299:CDS |
| TGGTCGGTAATAAGAAGAGA+TGG | 0.512641 | 3.3:+90508480 | None:intergenic |
| CATCAAGGATTCATCTGGAC+AGG | 0.512869 | 3.3:-90511226 | MS.gene75299:CDS |
| ATGAAGTGAATGCAAAGAGC+GGG | 0.513421 | 3.3:-90511416 | MS.gene75299:CDS |
| CGCCCAATTACAAGAAGAGA+TGG | 0.517391 | 3.3:+90510065 | None:intergenic |
| GCTGACATACCGCCCGAGAC+TGG | 0.517521 | 3.3:+90508707 | None:intergenic |
| GATGGGATTGACATTGCCCT+TGG | 0.518319 | 3.3:-90513600 | MS.gene75299:CDS |
| ATCAAGTTGGTCTCATGGAT+TGG | 0.519349 | 3.3:-90514518 | MS.gene75299:intron |
| CAGATCCATCGCCATGGCCA+TGG | 0.519382 | 3.3:-90514610 | None:intergenic |
| CATGCCATTTCTGGCATAGA+CGG | 0.521747 | 3.3:-90511647 | MS.gene75299:CDS |
| GTGTTCCATACTCAGAAGAC+GGG | 0.522168 | 3.3:-90514051 | MS.gene75299:CDS |
| TTGTGGTGTTGGATGATGTA+AGG | 0.522985 | 3.3:-90511317 | MS.gene75299:CDS |
| GAGCCCTGAGATTAAAATAG+TGG | 0.524090 | 3.3:+90508764 | None:intergenic |
| GTTCAGAGCATTGATGGTAA+TGG | 0.526198 | 3.3:-90510875 | MS.gene75299:CDS |
| CCAGCTACATAAATCACATC+AGG | 0.526361 | 3.3:+90511468 | None:intergenic |
| GATGTAGACTCCAATTTGGC+AGG | 0.527479 | 3.3:+90507061 | None:intergenic |
| AGTCTCAGGTGATAAGTTTG+TGG | 0.529071 | 3.3:-90511334 | MS.gene75299:CDS |
| AGTACTTACAAGGGCAGGAA+AGG | 0.530738 | 3.3:-90510231 | MS.gene75299:CDS |
| TATATCATTGATACTGTGAC+TGG | 0.532794 | 3.3:-90508947 | MS.gene75299:CDS |
| ATCGGTAGTGAATCAGTAAG+AGG | 0.536980 | 3.3:+90508133 | None:intergenic |
| AGGATTGTGAACATCCAGTT+GGG | 0.537160 | 3.3:-90510139 | MS.gene75299:CDS |
| CCAAACTATGCGTCCATCCC+CGG | 0.537428 | 3.3:+90510193 | None:intergenic |
| TGAGGGATTGAGAGTCCGAC+GGG | 0.540387 | 3.3:+90508183 | None:intergenic |
| GTCTTCCCTTCAGGGATCAA+AGG | 0.544092 | 3.3:-90512681 | MS.gene75299:CDS |
| TCTCTTTACGAAGATCAAGT+TGG | 0.545894 | 3.3:-90514531 | MS.gene75299:CDS |
| TTCAAATATATACTGGTACT+CGG | 0.546769 | 3.3:-90509820 | MS.gene75299:CDS |
| AAGCGAGATTGGTTAAAGAG+AGG | 0.551732 | 3.3:+90514556 | None:intergenic |
| TACAAATGAAGGTGAGTTGG+TGG | 0.553549 | 3.3:-90511130 | MS.gene75299:CDS |
| CAATGCTCTGTCAATTTCAG+AGG | 0.556372 | 3.3:-90511073 | MS.gene75299:CDS |
| GAGGATTGTGAACATCCAGT+TGG | 0.560024 | 3.3:-90510140 | MS.gene75299:CDS |
| GTATACTTCCATCAGAGGAA+AGG | 0.560313 | 3.3:+90512744 | None:intergenic |
| GCACCAATGATGTTGTTGAT+GGG | 0.562200 | 3.3:-90513617 | MS.gene75299:CDS |
| ATGACCCACCACGGTTGCCA+GGG | 0.562846 | 3.3:-90508908 | MS.gene75299:CDS |
| TCACAAGCTGAGAAAGAAGA+AGG | 0.563073 | 3.3:-90508163 | MS.gene75299:CDS |
| CTATTCAAAAGCTTAGGTTG+AGG | 0.563691 | 3.3:-90510310 | MS.gene75299:CDS |
| AACTTTAATTAAGAGAACTT+GGG | 0.565474 | 3.3:+90511152 | None:intergenic |
| AGGACCCTGGCAACCGTGGT+GGG | 0.566124 | 3.3:+90508904 | None:intergenic |
| GTTGAATCAGTATAAGGCAG+TGG | 0.566656 | 3.3:+90509936 | None:intergenic |
| TCATACTTTGCGTAAATCAG+AGG | 0.568075 | 3.3:-90510159 | MS.gene75299:CDS |
| ACAGTTGGCGCAGTCACACT+TGG | 0.569345 | 3.3:+90510035 | None:intergenic |
| GAACTTACCTGACGGGCAGA+TGG | 0.569560 | 3.3:-90512711 | MS.gene75299:CDS |
| CTTCTTGTAATTGGGCGATG+TGG | 0.570637 | 3.3:-90510059 | MS.gene75299:CDS |
| GAAGTGACTTCAACTGCTAA+GGG | 0.572594 | 3.3:-90508403 | MS.gene75299:CDS |
| ATTGTCTTCATATTGAACAA+AGG | 0.574065 | 3.3:+90511035 | None:intergenic |
| TCAAGAAAAGAAATAACAGT+TGG | 0.575622 | 3.3:+90510020 | None:intergenic |
| CGGAACAGCAACACCAGAGG+AGG | 0.576554 | 3.3:-90508984 | MS.gene75299:CDS |
| GGTTCCACATCATCATGCAC+TGG | 0.578057 | 3.3:-90510096 | MS.gene75299:CDS |
| AGCTACAACATTCTCTTCAG+TGG | 0.579214 | 3.3:+90514008 | None:intergenic |
| GCAAGTTTCAGACCTCATCA+AGG | 0.579316 | 3.3:-90511241 | MS.gene75299:CDS |
| TTACAGCATGAACAGGACCC+TGG | 0.580099 | 3.3:+90508891 | None:intergenic |
| ATGGAAGTATACTGAGAGCA+TGG | 0.580158 | 3.3:-90512733 | MS.gene75299:CDS |
| ATATTTGGAAGTTTGTACTT+GGG | 0.580879 | 3.3:-90508522 | MS.gene75299:CDS |
| ATGGTCAATTGTATTCCCAT+CGG | 0.582081 | 3.3:-90509703 | MS.gene75299:CDS |
| GTAGGTATTTAGTGAAAACT+GGG | 0.582984 | 3.3:-90508794 | MS.gene75299:intron |
| GATTCCCCAGAAGTTGCAAA+GGG | 0.590687 | 3.3:+90511363 | None:intergenic |
| TCTTGATGCATACACAGGGA+AGG | 0.590779 | 3.3:-90510003 | MS.gene75299:CDS |
| TACAAATCTCTCCATGGCGA+AGG | 0.591785 | 3.3:+90513977 | None:intergenic |
| AATTGACAGAGCATTGCTAA+AGG | 0.592188 | 3.3:+90511080 | None:intergenic |
| TGATTCCCCAGAAGTTGCAA+AGG | 0.592939 | 3.3:+90511362 | None:intergenic |
| GAGCATGGAACTTACCTGAC+GGG | 0.593894 | 3.3:-90512718 | MS.gene75299:CDS |
| CGAGGTCTATGACCAGTCTC+GGG | 0.594730 | 3.3:-90508719 | MS.gene75299:CDS |
| TGATTCCTTTGATCCCTGAA+GGG | 0.594748 | 3.3:+90512676 | None:intergenic |
| TAGAACAGAACCTCTTCGAA+TGG | 0.599301 | 3.3:-90510723 | MS.gene75299:CDS |
| CAGGACCCTGGCAACCGTGG+TGG | 0.599458 | 3.3:+90508903 | None:intergenic |
| ACTTCCCTTTGCAACTTCTG+GGG | 0.600142 | 3.3:-90511367 | MS.gene75299:CDS |
| GAACAGGACCCTGGCAACCG+TGG | 0.601108 | 3.3:+90508900 | None:intergenic |
| GGACATTTGCTGAAACTCAA+AGG | 0.601815 | 3.3:-90510368 | MS.gene75299:CDS |
| ATGCAGCACCAAAAGCCAGT+GGG | 0.601937 | 3.3:-90509012 | MS.gene75299:CDS |
| GTGAGGGATTGAGAGTCCGA+CGG | 0.602706 | 3.3:+90508182 | None:intergenic |
| CAATTGCATTCATGAAGTAG+TGG | 0.603523 | 3.3:-90509754 | MS.gene75299:CDS |
| TGTGTTCCATACTCAGAAGA+CGG | 0.604040 | 3.3:-90514052 | MS.gene75299:CDS |
| TTACTTATGTATTATCGGAG+AGG | 0.607601 | 3.3:-90506904 | MS.gene75299:CDS |
| GCTTCACTCGACCTTCGCCA+TGG | 0.608681 | 3.3:-90513988 | MS.gene75299:CDS |
| CAGAGCATTGATGGTAATGG+AGG | 0.610246 | 3.3:-90510872 | MS.gene75299:CDS |
| TTGGAATGGTGCTTTGCTGA+AGG | 0.619847 | 3.3:-90510980 | MS.gene75299:CDS |
| GGTCGGTAATAAGAAGAGAT+GGG | 0.622823 | 3.3:+90508481 | None:intergenic |
| TCATCCAGTGCATGATGATG+TGG | 0.623705 | 3.3:+90510092 | None:intergenic |
| GAATAACTCGAGCAACGGTG+TGG | 0.623885 | 3.3:+90509958 | None:intergenic |
| AATAACTCGAGCAACGGTGT+GGG | 0.627835 | 3.3:+90509959 | None:intergenic |
| GTCCAGATGAATCCTTGATG+AGG | 0.628352 | 3.3:+90511229 | None:intergenic |
| AAGGATGTTAATGATTGGAA+TGG | 0.628565 | 3.3:-90510994 | MS.gene75299:CDS |
| AAATATACCTGAGAAATGAT+CGG | 0.629270 | 3.3:+90508115 | None:intergenic |
| AGTTACAAGAAAATCAAATG+AGG | 0.629308 | 3.3:-90509658 | MS.gene75299:intron |
| TAGCCATACAAATCTCTCCA+TGG | 0.631175 | 3.3:+90513971 | None:intergenic |
| CTACTCCATAGGCAAAGACG+AGG | 0.640064 | 3.3:+90507038 | None:intergenic |
| GAACTACCTGTGGAAAAGGA+AGG | 0.640801 | 3.3:-90510763 | MS.gene75299:CDS |
| CAGTGGAATAACTCGAGCAA+CGG | 0.643016 | 3.3:+90509953 | None:intergenic |
| AATGCAGCACCAAAAGCCAG+TGG | 0.643369 | 3.3:-90509013 | MS.gene75299:CDS |
| AGAGCATGGAACTTACCTGA+CGG | 0.645707 | 3.3:-90512719 | MS.gene75299:CDS |
| AGAAATTGTCTGGAGTAGAG+AGG | 0.650623 | 3.3:-90510821 | MS.gene75299:CDS |
| TCTCAGTATACTTCCATCAG+AGG | 0.653634 | 3.3:+90512739 | None:intergenic |
| GCACCAACAGTATATTGGGA+AGG | 0.654684 | 3.3:-90514085 | MS.gene75299:CDS |
| TTGGGCTTAACATTTATCAG+TGG | 0.657781 | 3.3:-90510121 | MS.gene75299:CDS |
| GTAACAATAGACATCAACAA+TGG | 0.658123 | 3.3:-90511285 | MS.gene75299:CDS |
| ATACCTTAAGCCATTCGAAG+AGG | 0.658715 | 3.3:+90510713 | None:intergenic |
| TCAGAACAGATAGATCTCAT+GGG | 0.661453 | 3.3:-90510897 | MS.gene75299:CDS |
| AACAACGTCAGAACTACCTG+TGG | 0.662479 | 3.3:-90510773 | MS.gene75299:CDS |
| TCACTTCTATTAGTTCAACA+AGG | 0.662525 | 3.3:-90510844 | MS.gene75299:CDS |
| TCTAATGATCGCAAGCGCTG+AGG | 0.665196 | 3.3:-90510342 | MS.gene75299:CDS |
| TGCAGCACCAAAAGCCAGTG+GGG | 0.666440 | 3.3:-90509011 | MS.gene75299:CDS |
| AATCGGAACAGCAACACCAG+AGG | 0.670400 | 3.3:-90508987 | MS.gene75299:CDS |
| ATTGTCTGGAGTAGAGAGGA+CGG | 0.670770 | 3.3:-90510817 | MS.gene75299:CDS |
| TTGGTAATAGACCATCAAAG+AGG | 0.671484 | 3.3:-90510952 | MS.gene75299:CDS |
| CGTTGTTACATCAATAACTG+AGG | 0.681812 | 3.3:+90510789 | None:intergenic |
| TGAAGTGAATGCAAAGAGCG+GGG | 0.683707 | 3.3:-90511415 | MS.gene75299:CDS |
| TTGCATCGCATGACCCACCA+CGG | 0.684916 | 3.3:-90508917 | MS.gene75299:CDS |
| GTTGCTTATAGTACTTACAA+GGG | 0.685667 | 3.3:-90510240 | MS.gene75299:CDS |
| TAGACGGTGAAGTTCTCTGG+AGG | 0.686865 | 3.3:-90511631 | MS.gene75299:CDS |
| ACATGAGATGTCAGTCATCG+AGG | 0.688383 | 3.3:-90508737 | MS.gene75299:CDS |
| GGTCTATGACCAGTCTCGGG+CGG | 0.695398 | 3.3:-90508716 | MS.gene75299:intron |
| TATGAAGTGAATGCAAAGAG+CGG | 0.702657 | 3.3:-90511417 | MS.gene75299:CDS |
| TACTCCATAGGCAAAGACGA+GGG | 0.709340 | 3.3:+90507039 | None:intergenic |
| TATACTTGTACATGACATCG+TGG | 0.726568 | 3.3:+90509062 | None:intergenic |
| GAGGGATTGAGAGTCCGACG+GGG | 0.735305 | 3.3:+90508184 | None:intergenic |
| TGTTCCATACTCAGAAGACG+GGG | 0.735564 | 3.3:-90514050 | MS.gene75299:CDS |
| CTAAAAGTAGAAGGTCTGCG+AGG | 0.753852 | 3.3:-90507097 | MS.gene75299:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 90506877 | 90514619 | 90506877 | ID=MS.gene75299 |
| chr3.3 | mRNA | 90506877 | 90514619 | 90506877 | ID=MS.gene75299.t1;Parent=MS.gene75299 |
| chr3.3 | exon | 90514519 | 90514619 | 90514519 | ID=MS.gene75299.t1.exon1;Parent=MS.gene75299.t1 |
| chr3.3 | CDS | 90514519 | 90514619 | 90514519 | ID=cds.MS.gene75299.t1;Parent=MS.gene75299.t1 |
| chr3.3 | exon | 90513980 | 90514107 | 90513980 | ID=MS.gene75299.t1.exon2;Parent=MS.gene75299.t1 |
| chr3.3 | CDS | 90513980 | 90514107 | 90513980 | ID=cds.MS.gene75299.t1;Parent=MS.gene75299.t1 |
| chr3.3 | exon | 90513595 | 90513657 | 90513595 | ID=MS.gene75299.t1.exon3;Parent=MS.gene75299.t1 |
| chr3.3 | CDS | 90513595 | 90513657 | 90513595 | ID=cds.MS.gene75299.t1;Parent=MS.gene75299.t1 |
| chr3.3 | exon | 90512655 | 90512776 | 90512655 | ID=MS.gene75299.t1.exon4;Parent=MS.gene75299.t1 |
| chr3.3 | CDS | 90512655 | 90512776 | 90512655 | ID=cds.MS.gene75299.t1;Parent=MS.gene75299.t1 |
| chr3.3 | exon | 90511611 | 90511726 | 90511611 | ID=MS.gene75299.t1.exon5;Parent=MS.gene75299.t1 |
| chr3.3 | CDS | 90511611 | 90511726 | 90511611 | ID=cds.MS.gene75299.t1;Parent=MS.gene75299.t1 |
| chr3.3 | exon | 90510717 | 90511518 | 90510717 | ID=MS.gene75299.t1.exon6;Parent=MS.gene75299.t1 |
| chr3.3 | CDS | 90510717 | 90511518 | 90510717 | ID=cds.MS.gene75299.t1;Parent=MS.gene75299.t1 |
| chr3.3 | exon | 90509659 | 90510390 | 90509659 | ID=MS.gene75299.t1.exon7;Parent=MS.gene75299.t1 |
| chr3.3 | CDS | 90509659 | 90510390 | 90509659 | ID=cds.MS.gene75299.t1;Parent=MS.gene75299.t1 |
| chr3.3 | exon | 90508895 | 90509116 | 90508895 | ID=MS.gene75299.t1.exon8;Parent=MS.gene75299.t1 |
| chr3.3 | CDS | 90508895 | 90509116 | 90508895 | ID=cds.MS.gene75299.t1;Parent=MS.gene75299.t1 |
| chr3.3 | exon | 90508717 | 90508812 | 90508717 | ID=MS.gene75299.t1.exon9;Parent=MS.gene75299.t1 |
| chr3.3 | CDS | 90508717 | 90508812 | 90508717 | ID=cds.MS.gene75299.t1;Parent=MS.gene75299.t1 |
| chr3.3 | exon | 90508360 | 90508554 | 90508360 | ID=MS.gene75299.t1.exon10;Parent=MS.gene75299.t1 |
| chr3.3 | CDS | 90508360 | 90508554 | 90508360 | ID=cds.MS.gene75299.t1;Parent=MS.gene75299.t1 |
| chr3.3 | exon | 90508123 | 90508236 | 90508123 | ID=MS.gene75299.t1.exon11;Parent=MS.gene75299.t1 |
| chr3.3 | CDS | 90508123 | 90508236 | 90508123 | ID=cds.MS.gene75299.t1;Parent=MS.gene75299.t1 |
| chr3.3 | exon | 90506877 | 90507137 | 90506877 | ID=MS.gene75299.t1.exon12;Parent=MS.gene75299.t1 |
| chr3.3 | CDS | 90506877 | 90507137 | 90506877 | ID=cds.MS.gene75299.t1;Parent=MS.gene75299.t1 |
| Gene Sequence |
| Protein sequence |
