Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052772.t1 | XP_003604604.2 | 95.9 | 876 | 33 | 1 | 1 | 876 | 1 | 873 | 0.00E+00 | 1502.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052772.t1 | F4IYM4 | 69.7 | 868 | 237 | 5 | 35 | 876 | 28 | 895 | 0.0e+00 | 1144.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052772.t1 | G7JLW6 | 95.9 | 876 | 33 | 1 | 1 | 876 | 1 | 873 | 0.0e+00 | 1502.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049180 | MS.gene052772 | 0.816139 | 6.45E-52 | -1.69E-46 |
| MS.gene049209 | MS.gene052772 | 0.811239 | 7.73E-51 | -1.69E-46 |
| MS.gene052772 | MS.gene06297 | 0.806336 | 8.64E-50 | -1.69E-46 |
| MS.gene052772 | MS.gene41628 | 0.807273 | 5.48E-50 | -1.69E-46 |
| MS.gene052772 | MS.gene75299 | 0.80502 | 1.63E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052772.t1 | MTR_4g014960 | 98.630 | 876 | 9 | 1 | 1 | 876 | 1 | 873 | 0.0 | 1777 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052772.t1 | AT3G09090 | 70.805 | 870 | 228 | 5 | 33 | 876 | 26 | 895 | 0.0 | 1217 |
| MS.gene052772.t1 | AT3G09090 | 70.554 | 849 | 224 | 5 | 33 | 855 | 26 | 874 | 0.0 | 1181 |
| MS.gene052772.t1 | AT3G09090 | 68.930 | 766 | 212 | 5 | 33 | 772 | 26 | 791 | 0.0 | 1030 |
Find 219 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTATGAGTAACTACATTTC+TGG | 0.170344 | 4.4:+85968117 | None:intergenic |
| ATTCTTCCATGAGTTATAAA+TGG | 0.174312 | 4.4:+85961574 | None:intergenic |
| CCGAAACGTATTATTCTTCT+TGG | 0.202481 | 4.4:+85968173 | None:intergenic |
| ATTCTTGTTGGAACTTCTTA+TGG | 0.238062 | 4.4:-85963197 | MS.gene052772:CDS |
| CTTGTTACCTCTTCGTTTGA+TGG | 0.250632 | 4.4:-85961490 | MS.gene052772:CDS |
| TCCCAAATCATATCTCCTTT+GGG | 0.256362 | 4.4:+85962447 | None:intergenic |
| TTCCCAAATCATATCTCCTT+TGG | 0.267264 | 4.4:+85962446 | None:intergenic |
| GAGCCTGAAAAGAAAATAAA+TGG | 0.273112 | 4.4:-85965464 | MS.gene052772:CDS |
| AATTCGCGATAGTAGCTTCT+TGG | 0.273704 | 4.4:+85965809 | None:intergenic |
| CTTGTTGTACCAACACTATC+TGG | 0.277612 | 4.4:-85961646 | MS.gene052772:CDS |
| GAGCCTGAAAAGAAAGTAAA+TGG | 0.282787 | 4.4:-85965371 | MS.gene052772:CDS |
| CAAGAAGAATAATACGTTTC+GGG | 0.282960 | 4.4:-85968172 | MS.gene052772:CDS |
| CTTCTTGTTCTTCCAATGCT+TGG | 0.288511 | 4.4:-85960619 | MS.gene052772:CDS |
| CCTTGATTGCTGATATTAAC+AGG | 0.307509 | 4.4:-85967927 | MS.gene052772:intron |
| CTTCCAATGCTTGGGATGTT+TGG | 0.309012 | 4.4:-85960610 | MS.gene052772:CDS |
| TTGGTATGTGGGTTTGAATA+AGG | 0.317504 | 4.4:-85965878 | MS.gene052772:CDS |
| CTGGAAGATAACAACTTAAA+AGG | 0.318751 | 4.4:-85965233 | MS.gene052772:CDS |
| TTCTTGTTCTTCCAATGCTT+GGG | 0.326042 | 4.4:-85960618 | MS.gene052772:CDS |
| TTTCCACAGGCTCCAACTAT+TGG | 0.335598 | 4.4:-85961697 | MS.gene052772:intron |
| CTTGGATGGTGATGGGTATC+TGG | 0.342824 | 4.4:-85963222 | MS.gene052772:CDS |
| CCAGGAGCATATGAAAGAAT+TGG | 0.347380 | 4.4:-85963393 | MS.gene052772:CDS |
| ACAATTTATAGTAGTGCATA+TGG | 0.353288 | 4.4:+85960650 | None:intergenic |
| GCTTTATTGTTCTCTCTCCT+TGG | 0.354570 | 4.4:+85960809 | None:intergenic |
| AGGGAAGCATGAGAAATTAG+AGG | 0.366054 | 4.4:-85965012 | MS.gene052772:CDS |
| CTCTCTCCTTGGTAATTACC+AGG | 0.369967 | 4.4:+85960820 | None:intergenic |
| TTGCAACATTATTTCTTCCT+TGG | 0.372211 | 4.4:+85961098 | None:intergenic |
| ATGAACTTCTTCCTTACCTT+TGG | 0.376972 | 4.4:+85965187 | None:intergenic |
| GGGAAGATTCATGTTCTTGA+TGG | 0.378492 | 4.4:-85961625 | MS.gene052772:CDS |
| CCAAGAAGAATAATACGTTT+CGG | 0.380774 | 4.4:-85968173 | MS.gene052772:CDS |
| ACATTATTTCTTCCTTGGTT+AGG | 0.389436 | 4.4:+85961103 | None:intergenic |
| GCTTGGGATGTTTGGTGTGC+TGG | 0.390393 | 4.4:-85960602 | MS.gene052772:CDS |
| AAATAGCACTTCACCATTGT+AGG | 0.390827 | 4.4:+85966066 | None:intergenic |
| TCTTAATACCCTCCTCTGAT+TGG | 0.392334 | 4.4:+85965345 | None:intergenic |
| GGTTATTTGTACCTCATTGA+TGG | 0.398016 | 4.4:-85961469 | MS.gene052772:CDS |
| ATGTTTACCAGGCTGGTAAT+AGG | 0.401122 | 4.4:+85960777 | None:intergenic |
| AAGGACCACAGGAACAGTTT+TGG | 0.401580 | 4.4:-85960728 | MS.gene052772:CDS |
| CCTGTTAATATCAGCAATCA+AGG | 0.401995 | 4.4:+85967927 | None:intergenic |
| GAAAATGATGGCAATGGTAC+TGG | 0.405022 | 4.4:+85960559 | None:intergenic |
| TGTTAATACTCTCCTCTGAT+TGG | 0.405891 | 4.4:+85965438 | None:intergenic |
| TTCTTCCATGAGTTATAAAT+GGG | 0.418307 | 4.4:+85961575 | None:intergenic |
| GGAAGGGATGGATCACCTAT+TGG | 0.420696 | 4.4:-85961604 | MS.gene052772:CDS |
| TTCTCCAACTGTTGTAGACT+TGG | 0.422387 | 4.4:-85963240 | MS.gene052772:CDS |
| TTATGAGTAACTACATTTCT+GGG | 0.425505 | 4.4:+85968118 | None:intergenic |
| TACCAGGCTGGTAATAGGTC+TGG | 0.426256 | 4.4:+85960782 | None:intergenic |
| GACATTGGAAAATATGTTGC+TGG | 0.429745 | 4.4:-85963362 | MS.gene052772:CDS |
| TTCAAGGTAGTGAACAAAAG+AGG | 0.437265 | 4.4:+85967449 | None:intergenic |
| TAAACAGAAGGAAAAGAAGA+AGG | 0.440987 | 4.4:-85961521 | MS.gene052772:CDS |
| TAGCACTGGGAGGCGACTGC+TGG | 0.441088 | 4.4:-85965252 | MS.gene052772:CDS |
| CCAATTCTTTCATATGCTCC+TGG | 0.441892 | 4.4:+85963393 | None:intergenic |
| GCAATGGTACTGGGCCTTGT+GGG | 0.449846 | 4.4:+85960569 | None:intergenic |
| GGTATCCTCCTCTGCGAAAA+CGG | 0.450234 | 4.4:+85968194 | None:intergenic |
| AGCTGCCAACTGTGGGAGTA+AGG | 0.450842 | 4.4:-85960747 | MS.gene052772:CDS |
| ATGCAGATATAGCATGGTCT+TGG | 0.451107 | 4.4:-85961309 | MS.gene052772:intron |
| CACTACCTTGAAGTTCTTGA+GGG | 0.452249 | 4.4:-85967438 | MS.gene052772:CDS |
| TCAGGATGGGTACGGTCCAC+TGG | 0.455155 | 4.4:+85965853 | None:intergenic |
| AATAATGTTGCAAATCGGTA+TGG | 0.458130 | 4.4:-85961088 | MS.gene052772:CDS |
| CAGACTTCCTTGCTTGTCCC+TGG | 0.461959 | 4.4:-85960838 | MS.gene052772:CDS |
| AGAGAAGTTCCCTCTTGAAA+TGG | 0.464654 | 4.4:-85962568 | MS.gene052772:CDS |
| TCTATGTCACTCATCCTTCA+AGG | 0.464846 | 4.4:-85961054 | MS.gene052772:CDS |
| TAATTCGATGTTTACCAGGC+TGG | 0.464908 | 4.4:+85960770 | None:intergenic |
| CAGGAGCATATGAAAGAATT+GGG | 0.467533 | 4.4:-85963392 | MS.gene052772:CDS |
| CCCAAATCATATCTCCTTTG+GGG | 0.469336 | 4.4:+85962448 | None:intergenic |
| CCCCAAAGGAGATATGATTT+GGG | 0.470564 | 4.4:-85962448 | MS.gene052772:CDS |
| ATAAATGGGTACCGTCCAAT+AGG | 0.470788 | 4.4:+85961589 | None:intergenic |
| AGTTGGTCATCATGAACATC+AGG | 0.476688 | 4.4:+85965835 | None:intergenic |
| CAACTATTGGTGATATCGAC+GGG | 0.476817 | 4.4:-85961684 | MS.gene052772:CDS |
| AGCTTAATTCGATGTTTACC+AGG | 0.476834 | 4.4:+85960766 | None:intergenic |
| TTGAAAATATCCTACCTTGA+GGG | 0.477548 | 4.4:+85961193 | None:intergenic |
| CGGTACCCATTTATAACTCA+TGG | 0.479180 | 4.4:-85961580 | MS.gene052772:CDS |
| GTTTAGAGATGAAGATGCTT+TGG | 0.483541 | 4.4:-85968022 | MS.gene052772:intron |
| CTGTGAATTTAGAGCTAAGA+TGG | 0.484697 | 4.4:-85967984 | MS.gene052772:CDS |
| CGGTGCCCTCAAGAACTTCA+AGG | 0.486346 | 4.4:+85967433 | None:intergenic |
| GCAGACAACAAGACTAGCAC+TGG | 0.487427 | 4.4:-85965266 | MS.gene052772:CDS |
| TCATCACGGAAAGCCCTTGA+AGG | 0.491356 | 4.4:+85961040 | None:intergenic |
| TACCTCATTGATGGACCTAC+AGG | 0.491627 | 4.4:-85961460 | MS.gene052772:CDS |
| GGCAATGGTACTGGGCCTTG+TGG | 0.491833 | 4.4:+85960568 | None:intergenic |
| ACAGTGGATTGGTGGAAGGC+AGG | 0.495590 | 4.4:+85966151 | None:intergenic |
| ATCTGTCAGTGCTGGTTCTG+TGG | 0.497253 | 4.4:-85965300 | MS.gene052772:CDS |
| GATAATTATAGATACCCATC+TGG | 0.497596 | 4.4:-85960980 | MS.gene052772:CDS |
| CATTGTGGGGTGATGAAGAA+TGG | 0.497821 | 4.4:-85965040 | MS.gene052772:CDS |
| CATCTTAGCTCTAAATTCAC+AGG | 0.499015 | 4.4:+85967985 | None:intergenic |
| GAAGAAATAATGTTGCAAAT+CGG | 0.499551 | 4.4:-85961093 | MS.gene052772:CDS |
| GATGATCTAACACATAGAAT+AGG | 0.499933 | 4.4:+85963174 | None:intergenic |
| ATTCTCCTTGTAGAGATGAA+TGG | 0.503693 | 4.4:-85965563 | MS.gene052772:intron |
| AAACAGAAGGAAAAGAAGAA+GGG | 0.505045 | 4.4:-85961520 | MS.gene052772:CDS |
| ACCGATGGAGACAAAATGCC+AGG | 0.507801 | 4.4:-85967414 | MS.gene052772:intron |
| CTGATTGTCTCGACAATGAA+TGG | 0.509054 | 4.4:-85961254 | MS.gene052772:CDS |
| GGTGATGAAGAATGGATTGA+AGG | 0.513551 | 4.4:-85965032 | MS.gene052772:CDS |
| CTGGTCATCCTTCGCCCACA+AGG | 0.516235 | 4.4:-85960583 | MS.gene052772:CDS |
| CATGTTCTTGATGGAAGGGA+TGG | 0.519262 | 4.4:-85961616 | MS.gene052772:CDS |
| GGGTATCTGGACATTCTTGT+TGG | 0.523031 | 4.4:-85963209 | MS.gene052772:CDS |
| AGATTCATGTTCTTGATGGA+AGG | 0.524196 | 4.4:-85961621 | MS.gene052772:CDS |
| AACTCTTTCCTTCCTCATCA+CGG | 0.525602 | 4.4:+85961026 | None:intergenic |
| GATAATTCATCTGTCAGTGC+TGG | 0.526433 | 4.4:-85965308 | MS.gene052772:CDS |
| TGAAAATATCCTACCTTGAG+GGG | 0.528195 | 4.4:+85961194 | None:intergenic |
| ACTACTATAAATTGTTGAAG+TGG | 0.530048 | 4.4:-85960642 | MS.gene052772:CDS |
| CCAAATCATATCTCCTTTGG+GGG | 0.530327 | 4.4:+85962449 | None:intergenic |
| GCAGCTGATATTAATGATGA+TGG | 0.531122 | 4.4:-85962522 | MS.gene052772:CDS |
| TGGGTATCCGAGCGCATCAT+CGG | 0.531962 | 4.4:+85968137 | None:intergenic |
| TATTGACAATGATGGCGTAA+TGG | 0.532605 | 4.4:-85964827 | MS.gene052772:CDS |
| TCGAATTAAGCTGCCAACTG+TGG | 0.533264 | 4.4:-85960755 | MS.gene052772:CDS |
| TCACTACCTTGAAGTTCTTG+AGG | 0.536008 | 4.4:-85967439 | MS.gene052772:CDS |
| TCGTTGTTCCTTGAAAATGA+TGG | 0.536141 | 4.4:+85960547 | None:intergenic |
| TGTGGAAAATGAGGAAGGAC+TGG | 0.538615 | 4.4:-85965156 | MS.gene052772:CDS |
| TGTTGATTTAAGTAAACAGA+AGG | 0.539500 | 4.4:-85961533 | MS.gene052772:CDS |
| TGGCGTGAGAGAAATAGCTT+TGG | 0.539702 | 4.4:-85966092 | MS.gene052772:CDS |
| TCCATGCAACAACATTTCCA+TGG | 0.540039 | 4.4:+85962472 | None:intergenic |
| TGATGGGAAGCTTGACATAG+TGG | 0.541378 | 4.4:-85967475 | MS.gene052772:CDS |
| CCATCCAAGTCTACAACAGT+TGG | 0.542560 | 4.4:+85963236 | None:intergenic |
| AGAAGTTCATGCTGCAACTG+TGG | 0.544496 | 4.4:-85965174 | MS.gene052772:CDS |
| TAGAATGCACAGTGGATTGG+TGG | 0.544884 | 4.4:+85966143 | None:intergenic |
| TTCAAGGGCTTTCCGTGATG+AGG | 0.545086 | 4.4:-85961038 | MS.gene052772:CDS |
| ATTGCAGATATTGACAATGA+TGG | 0.545159 | 4.4:-85964835 | MS.gene052772:CDS |
| AATATCCTACCTTGAGGGGA+TGG | 0.546249 | 4.4:+85961198 | None:intergenic |
| CCGTCGATATCACCAATAGT+TGG | 0.547051 | 4.4:+85961685 | None:intergenic |
| GAAGTTCTTGAGGGCACCGA+TGG | 0.547844 | 4.4:-85967429 | MS.gene052772:CDS |
| TTCTGTTGATGTGGAAGCTG+AGG | 0.550577 | 4.4:+85965520 | None:intergenic |
| GTCTTGGCAGACAATGTAGA+TGG | 0.554460 | 4.4:-85961293 | MS.gene052772:CDS |
| AACAACACCTGCTTGAATCT+CGG | 0.554490 | 4.4:+85962545 | None:intergenic |
| TGCTGCAACTGTGGAAAATG+AGG | 0.555327 | 4.4:-85965165 | MS.gene052772:CDS |
| TTGTTGTACCAACACTATCT+GGG | 0.556727 | 4.4:-85961645 | MS.gene052772:CDS |
| GATTCATGTTCTTGATGGAA+GGG | 0.557088 | 4.4:-85961620 | MS.gene052772:CDS |
| TGGTTCTGAATCCAAAGGTA+AGG | 0.557327 | 4.4:-85965198 | MS.gene052772:CDS |
| TTATGTTGATGAATCATTGT+GGG | 0.557727 | 4.4:-85965054 | MS.gene052772:CDS |
| CTGAGGAATTAACTTCGTGC+CGG | 0.557819 | 4.4:+85965537 | None:intergenic |
| GAATTGGGCGATATTGACAT+TGG | 0.558054 | 4.4:-85963377 | MS.gene052772:CDS |
| TAGTAGCTTCTTGGACAAGT+TGG | 0.558204 | 4.4:+85965818 | None:intergenic |
| CCAACTGTTGTAGACTTGGA+TGG | 0.558571 | 4.4:-85963236 | MS.gene052772:CDS |
| TTCTATGTGTTAGATCATCA+TGG | 0.558711 | 4.4:-85963170 | MS.gene052772:intron |
| CGAATTAAGCTGCCAACTGT+GGG | 0.559486 | 4.4:-85960754 | MS.gene052772:CDS |
| CTTGTCTGACATGATATAGC+CGG | 0.560084 | 4.4:+85965933 | None:intergenic |
| TTGAGGGGATGGTGAGGTGA+GGG | 0.560431 | 4.4:+85961209 | None:intergenic |
| CATAGTTGTACTCATCAGCC+AGG | 0.561836 | 4.4:+85965087 | None:intergenic |
| TGGCAGACAATGTAGATGGT+GGG | 0.562085 | 4.4:-85961289 | MS.gene052772:CDS |
| AGATACCCATCTGGTCATCA+AGG | 0.562292 | 4.4:-85960971 | MS.gene052772:CDS |
| CATCAAACGAAGAGGTAACA+AGG | 0.562691 | 4.4:+85961491 | None:intergenic |
| AAAATGATGGCAATGGTACT+GGG | 0.566588 | 4.4:+85960560 | None:intergenic |
| AGGGTGACTTTCTGTTGATG+TGG | 0.570303 | 4.4:+85965511 | None:intergenic |
| ATTATGTTGATGAATCATTG+TGG | 0.571019 | 4.4:-85965055 | MS.gene052772:CDS |
| TTGTCTATGTCATATAGAAG+TGG | 0.571149 | 4.4:+85966118 | None:intergenic |
| ATAATGTTGCAAATCGGTAT+GGG | 0.571484 | 4.4:-85961087 | MS.gene052772:CDS |
| AACCAGACCTATTACCAGCC+TGG | 0.571870 | 4.4:-85960784 | MS.gene052772:CDS |
| TGTGCTGATGTTGTTGACAT+TGG | 0.572184 | 4.4:-85961436 | MS.gene052772:CDS |
| GTGATGAAGAATGGATTGAA+GGG | 0.577077 | 4.4:-85965031 | MS.gene052772:CDS |
| GAACTTACAGTGACATGGTA+TGG | 0.578989 | 4.4:+85960947 | None:intergenic |
| GATGAATTATCAGCAACTGT+TGG | 0.581842 | 4.4:+85965320 | None:intergenic |
| TTAAAAGGAGCTGAGCAAGT+TGG | 0.583630 | 4.4:-85965218 | MS.gene052772:CDS |
| GTACTGGGCCTTGTGGGCGA+AGG | 0.583845 | 4.4:+85960575 | None:intergenic |
| AGGGCTTTCCGTGATGAGGA+AGG | 0.583864 | 4.4:-85961034 | MS.gene052772:CDS |
| TGAATCTCGGCCATTTCAAG+AGG | 0.584486 | 4.4:+85962558 | None:intergenic |
| CCAACTATTGGTGATATCGA+CGG | 0.586361 | 4.4:-85961685 | MS.gene052772:CDS |
| CTAGTTACTGCTGATACCCA+TGG | 0.586395 | 4.4:-85962489 | MS.gene052772:CDS |
| CTATATGACATAGACAAAGA+TGG | 0.586706 | 4.4:-85966112 | MS.gene052772:CDS |
| GACTAGAATGCACAGTGGAT+TGG | 0.587075 | 4.4:+85966140 | None:intergenic |
| ACACCAAACATCCCAAGCAT+TGG | 0.587378 | 4.4:+85960607 | None:intergenic |
| GTGGTCCTTACTCCCACAGT+TGG | 0.587468 | 4.4:+85960742 | None:intergenic |
| CTATGTCACTCATCCTTCAA+GGG | 0.590862 | 4.4:-85961053 | MS.gene052772:CDS |
| CTCGACCAAAACTGTTCCTG+TGG | 0.591060 | 4.4:+85960723 | None:intergenic |
| TCAAGGTAGTGAACAAAAGA+GGG | 0.591437 | 4.4:+85967450 | None:intergenic |
| ATTGGTGATATCGACGGGGA+TGG | 0.591949 | 4.4:-85961679 | MS.gene052772:CDS |
| TTGTAGAGATGAATGGAAGC+CGG | 0.594917 | 4.4:-85965556 | MS.gene052772:intron |
| ATAGCTTTGGCAACCTACAA+TGG | 0.596273 | 4.4:-85966079 | MS.gene052772:CDS |
| GCAAATCGGTATGGGCGTGA+AGG | 0.597432 | 4.4:-85961079 | MS.gene052772:CDS |
| CCATGCAACAACATTTCCAT+GGG | 0.597707 | 4.4:+85962473 | None:intergenic |
| AGTAAATGGAAGCCAATCAG+AGG | 0.598162 | 4.4:-85965357 | MS.gene052772:CDS |
| CTTGAGGGGATGGTGAGGTG+AGG | 0.598439 | 4.4:+85961208 | None:intergenic |
| GTTGTAGACTTGGATGGTGA+TGG | 0.598690 | 4.4:-85963230 | MS.gene052772:CDS |
| GGTCATCATGAACATCAGGA+TGG | 0.599779 | 4.4:+85965839 | None:intergenic |
| GAGAAGAATATACGTACGCT+CGG | 0.600163 | 4.4:+85963258 | None:intergenic |
| CATGAACATCAGGATGGGTA+CGG | 0.601250 | 4.4:+85965845 | None:intergenic |
| AAATGGAAGCCAATCAGAGG+AGG | 0.604090 | 4.4:-85965354 | MS.gene052772:CDS |
| ACTGTGGGAGTAAGGACCAC+AGG | 0.604153 | 4.4:-85960739 | MS.gene052772:CDS |
| TTGGCAGACAATGTAGATGG+TGG | 0.604254 | 4.4:-85961290 | MS.gene052772:CDS |
| CCCATGGAAATGTTGTTGCA+TGG | 0.605735 | 4.4:-85962473 | MS.gene052772:CDS |
| CTCACCTCACCATCCCCTCA+AGG | 0.605790 | 4.4:-85961207 | MS.gene052772:intron |
| TTCCTTGAAAATGATGGCAA+TGG | 0.608432 | 4.4:+85960553 | None:intergenic |
| CTTGTCCCTGGTAATTACCA+AGG | 0.608532 | 4.4:-85960826 | MS.gene052772:CDS |
| TGGACACAAAACAAGTCAAG+TGG | 0.612073 | 4.4:-85963319 | MS.gene052772:CDS |
| ATTCCGCAATAGTGATGACC+TGG | 0.612503 | 4.4:-85965105 | MS.gene052772:CDS |
| GAAATGGCCGAGATTCAAGC+AGG | 0.614578 | 4.4:-85962552 | MS.gene052772:CDS |
| GTCATCATGAACATCAGGAT+GGG | 0.614968 | 4.4:+85965840 | None:intergenic |
| GAAGCCACCGATGATGCGCT+CGG | 0.617757 | 4.4:-85968144 | MS.gene052772:CDS |
| CTGTTAATATCAGCAATCAA+GGG | 0.618771 | 4.4:+85967928 | None:intergenic |
| CAGCCAGGTCATCACTATTG+CGG | 0.618967 | 4.4:+85965102 | None:intergenic |
| GCAACTGTGGAAAATGAGGA+AGG | 0.620753 | 4.4:-85965161 | MS.gene052772:CDS |
| ATGCACAGTGGATTGGTGGA+AGG | 0.621186 | 4.4:+85966147 | None:intergenic |
| TTGGTACAACAAGCTCAGTA+CGG | 0.621516 | 4.4:+85961656 | None:intergenic |
| TTGTAGACTTGGATGGTGAT+GGG | 0.625613 | 4.4:-85963229 | MS.gene052772:CDS |
| CAAATAACCATCAAACGAAG+AGG | 0.628486 | 4.4:+85961483 | None:intergenic |
| TATGGTCCTTGATGACCAGA+TGG | 0.631810 | 4.4:+85960965 | None:intergenic |
| AATAAATGGAAGCCAATCAG+AGG | 0.633557 | 4.4:-85965450 | MS.gene052772:CDS |
| GGCAGACAATGTAGATGGTG+GGG | 0.633931 | 4.4:-85961288 | MS.gene052772:CDS |
| GGGTTTGAATAAGGATCCAG+TGG | 0.638731 | 4.4:-85965869 | MS.gene052772:CDS |
| TGAATCTTCCCAGATAGTGT+TGG | 0.640555 | 4.4:+85961637 | None:intergenic |
| GGGATGGATCACCTATTGGA+CGG | 0.641758 | 4.4:-85961600 | MS.gene052772:CDS |
| GTAATTACCAGGGACAAGCA+AGG | 0.643082 | 4.4:+85960831 | None:intergenic |
| CCTACCTTGAGGGGATGGTG+AGG | 0.643978 | 4.4:+85961203 | None:intergenic |
| GTATCCGAGCGCATCATCGG+TGG | 0.645748 | 4.4:+85968140 | None:intergenic |
| GATGGGAACTTACAGTGACA+TGG | 0.645843 | 4.4:+85960942 | None:intergenic |
| TCTCTCCTTGGTAATTACCA+GGG | 0.649161 | 4.4:+85960821 | None:intergenic |
| GAATCTCGGCCATTTCAAGA+GGG | 0.650459 | 4.4:+85962559 | None:intergenic |
| CAAGTTGGTTCTGAATCCAA+AGG | 0.652708 | 4.4:-85965203 | MS.gene052772:CDS |
| AGCCTGTAGGTCCATCAATG+AGG | 0.655462 | 4.4:+85961458 | None:intergenic |
| CAGACAACAAGACTAGCACT+GGG | 0.656102 | 4.4:-85965265 | MS.gene052772:CDS |
| GTAGGAGGAACTAACAGGAG+TGG | 0.657581 | 4.4:+85964959 | None:intergenic |
| GCATGGAGATTGCCTAACCA+AGG | 0.658526 | 4.4:-85961115 | MS.gene052772:CDS |
| AATGGAAGCCAATCAGAGGA+GGG | 0.664074 | 4.4:-85965353 | MS.gene052772:CDS |
| TGACAGGTATTATGACAACC+AGG | 0.671120 | 4.4:-85963411 | MS.gene052772:intron |
| TATGTTGATGAATCATTGTG+GGG | 0.671873 | 4.4:-85965053 | MS.gene052772:CDS |
| ATGGTCCTTGATGACCAGAT+GGG | 0.674700 | 4.4:+85960966 | None:intergenic |
| TATCATGTCAGACAAGCTTG+AGG | 0.681103 | 4.4:-85965926 | MS.gene052772:CDS |
| ACAACATCAGCACAGCCTGT+AGG | 0.681376 | 4.4:+85961445 | None:intergenic |
| ATCCTCCTCTGCGAAAACGG+AGG | 0.685152 | 4.4:+85968197 | None:intergenic |
| ATCAAACGAAGAGGTAACAA+GGG | 0.688966 | 4.4:+85961492 | None:intergenic |
| AACTATTGGTGATATCGACG+GGG | 0.720915 | 4.4:-85961683 | MS.gene052772:CDS |
| ATTGGAAAATATGTTGCTGG+TGG | 0.727182 | 4.4:-85963359 | MS.gene052772:CDS |
| ACAACAAGACTAGCACTGGG+AGG | 0.745455 | 4.4:-85965262 | MS.gene052772:CDS |
| ACAAGCTTGAGGTCCCACGT+AGG | 0.760693 | 4.4:-85965915 | MS.gene052772:CDS |
| AAGTGGACTAGAATGCACAG+TGG | 0.790418 | 4.4:+85966135 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 85960543 | 85968280 | 85960543 | ID=MS.gene052772 |
| chr4.4 | mRNA | 85960543 | 85968280 | 85960543 | ID=MS.gene052772.t1;Parent=MS.gene052772 |
| chr4.4 | exon | 85968132 | 85968280 | 85968132 | ID=MS.gene052772.t1.exon1;Parent=MS.gene052772.t1 |
| chr4.4 | CDS | 85968132 | 85968280 | 85968132 | ID=cds.MS.gene052772.t1;Parent=MS.gene052772.t1 |
| chr4.4 | exon | 85967928 | 85968038 | 85967928 | ID=MS.gene052772.t1.exon2;Parent=MS.gene052772.t1 |
| chr4.4 | CDS | 85967928 | 85968038 | 85967928 | ID=cds.MS.gene052772.t1;Parent=MS.gene052772.t1 |
| chr4.4 | exon | 85967415 | 85967497 | 85967415 | ID=MS.gene052772.t1.exon3;Parent=MS.gene052772.t1 |
| chr4.4 | CDS | 85967415 | 85967497 | 85967415 | ID=cds.MS.gene052772.t1;Parent=MS.gene052772.t1 |
| chr4.4 | exon | 85966061 | 85966178 | 85966061 | ID=MS.gene052772.t1.exon4;Parent=MS.gene052772.t1 |
| chr4.4 | CDS | 85966061 | 85966178 | 85966061 | ID=cds.MS.gene052772.t1;Parent=MS.gene052772.t1 |
| chr4.4 | exon | 85965800 | 85965960 | 85965800 | ID=MS.gene052772.t1.exon5;Parent=MS.gene052772.t1 |
| chr4.4 | CDS | 85965800 | 85965960 | 85965800 | ID=cds.MS.gene052772.t1;Parent=MS.gene052772.t1 |
| chr4.4 | exon | 85964974 | 85965572 | 85964974 | ID=MS.gene052772.t1.exon6;Parent=MS.gene052772.t1 |
| chr4.4 | CDS | 85964974 | 85965572 | 85964974 | ID=cds.MS.gene052772.t1;Parent=MS.gene052772.t1 |
| chr4.4 | exon | 85964790 | 85964860 | 85964790 | ID=MS.gene052772.t1.exon7;Parent=MS.gene052772.t1 |
| chr4.4 | CDS | 85964790 | 85964860 | 85964790 | ID=cds.MS.gene052772.t1;Parent=MS.gene052772.t1 |
| chr4.4 | exon | 85963171 | 85963427 | 85963171 | ID=MS.gene052772.t1.exon8;Parent=MS.gene052772.t1 |
| chr4.4 | CDS | 85963171 | 85963427 | 85963171 | ID=cds.MS.gene052772.t1;Parent=MS.gene052772.t1 |
| chr4.4 | exon | 85962419 | 85962600 | 85962419 | ID=MS.gene052772.t1.exon9;Parent=MS.gene052772.t1 |
| chr4.4 | CDS | 85962419 | 85962600 | 85962419 | ID=cds.MS.gene052772.t1;Parent=MS.gene052772.t1 |
| chr4.4 | exon | 85961427 | 85961710 | 85961427 | ID=MS.gene052772.t1.exon10;Parent=MS.gene052772.t1 |
| chr4.4 | CDS | 85961427 | 85961710 | 85961427 | ID=cds.MS.gene052772.t1;Parent=MS.gene052772.t1 |
| chr4.4 | exon | 85961208 | 85961325 | 85961208 | ID=MS.gene052772.t1.exon11;Parent=MS.gene052772.t1 |
| chr4.4 | CDS | 85961208 | 85961325 | 85961208 | ID=cds.MS.gene052772.t1;Parent=MS.gene052772.t1 |
| chr4.4 | exon | 85960955 | 85961137 | 85960955 | ID=MS.gene052772.t1.exon12;Parent=MS.gene052772.t1 |
| chr4.4 | CDS | 85960955 | 85961137 | 85960955 | ID=cds.MS.gene052772.t1;Parent=MS.gene052772.t1 |
| chr4.4 | exon | 85960543 | 85960857 | 85960543 | ID=MS.gene052772.t1.exon13;Parent=MS.gene052772.t1 |
| chr4.4 | CDS | 85960543 | 85960857 | 85960543 | ID=cds.MS.gene052772.t1;Parent=MS.gene052772.t1 |
| Gene Sequence |
| Protein sequence |
