AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene75458

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene75458.t1 MTR_3g087640 92.243 477 31 3 1 471 1 477 0.0 895
MS.gene75458.t1 MTR_2g089650 65.328 473 155 4 1 470 1 467 0.0 634
MS.gene75458.t1 MTR_2g089735 67.377 469 145 5 7 471 2 466 0.0 624
MS.gene75458.t1 MTR_2g089755 64.606 469 161 3 7 471 13 480 0.0 609
MS.gene75458.t1 MTR_3g435300 78.626 262 55 1 9 270 3 263 6.09e-150 428
MS.gene75458.t1 MTR_2g089765 35.861 488 262 15 10 467 17 483 1.25e-84 269
MS.gene75458.t1 MTR_7g014330 36.498 474 264 13 10 466 3 456 2.31e-82 262
MS.gene75458.t1 MTR_6g015850 37.740 469 251 15 11 467 19 458 1.59e-78 252
MS.gene75458.t1 MTR_7g014250 35.158 475 269 13 10 466 3 456 1.97e-78 252
MS.gene75458.t1 MTR_2g089670 35.010 477 268 16 10 466 23 477 1.02e-76 248
MS.gene75458.t1 MTR_7g015860 32.645 484 276 13 8 467 4 461 2.36e-75 244
MS.gene75458.t1 MTR_8g012750 34.221 488 273 14 10 467 4 473 3.66e-74 241
MS.gene75458.t1 MTR_7g014230 34.100 478 274 13 7 465 2 457 5.55e-74 240
MS.gene75458.t1 MTR_6g015815 35.853 463 245 15 26 467 30 461 7.25e-73 237
MS.gene75458.t1 MTR_7g014200 33.678 484 287 13 1 466 1 468 8.84e-73 238
MS.gene75458.t1 MTR_3g028210 33.473 478 277 14 10 467 9 465 2.03e-72 236
MS.gene75458.t1 MTR_6g015830 36.147 462 251 17 23 467 27 461 2.49e-69 228
MS.gene75458.t1 MTR_7g014610 33.742 489 270 15 10 466 9 475 2.75e-68 226
MS.gene75458.t1 MTR_7g014160 33.814 485 272 18 10 466 10 473 9.60e-68 224
MS.gene75458.t1 MTR_3g435290 80.992 121 23 0 350 470 1 121 3.14e-62 198
MS.gene75458.t1 MTR_6g015320 30.258 466 284 12 17 467 16 455 5.24e-62 209
MS.gene75458.t1 MTR_6g015315 32.420 438 260 13 43 467 39 453 5.10e-61 206
MS.gene75458.t1 MTR_4g032380 63.514 148 36 2 158 303 100 231 1.99e-60 197
MS.gene75458.t1 MTR_4g032380 58.750 80 30 1 9 88 32 108 4.76e-20 89.4
MS.gene75458.t1 MTR_7g013850 30.595 487 293 13 10 466 9 480 3.72e-54 189
MS.gene75458.t1 MTR_2g089665 30.337 445 183 14 10 440 3 334 1.01e-51 178
MS.gene75458.t1 MTR_7g014620 30.556 468 272 15 16 466 1 432 1.08e-50 178
MS.gene75458.t1 MTR_7g014360 30.713 407 226 11 75 466 21 386 1.60e-48 171
MS.gene75458.t1 MTR_2g067320 71.277 94 25 1 218 309 7 100 1.81e-40 142
MS.gene75458.t1 MTR_7g096620 59.504 121 42 3 218 334 7 124 1.56e-39 139
MS.gene75458.t1 MTR_2g104220 76.623 77 18 0 146 222 16 92 2.45e-39 137
MS.gene75458.t1 MTR_1g090750 67.010 97 30 1 215 309 4 100 3.79e-37 133
MS.gene75458.t1 MTR_1g036160 69.149 94 27 1 218 309 86 179 1.59e-36 133
MS.gene75458.t1 MTR_8g096530 29.904 418 243 17 10 420 8 382 1.09e-27 115
MS.gene75458.t1 MTR_7g014670 37.306 193 113 6 281 468 72 261 6.52e-27 109
MS.gene75458.t1 MTR_7g014630 29.054 296 173 11 10 284 10 289 2.37e-26 110
MS.gene75458.t1 MTR_2g064495 25.431 464 289 20 13 461 7 428 3.11e-25 107
MS.gene75458.t1 MTR_6g015310 25.301 415 213 15 41 444 5 333 8.53e-25 105
MS.gene75458.t1 MTR_8g075610 25.977 435 267 17 41 462 25 417 3.04e-24 105
MS.gene75458.t1 MTR_3g101900 25.115 434 278 13 30 450 30 429 7.19e-24 104
MS.gene75458.t1 MTR_7g014310 29.070 344 168 14 114 449 31 306 7.27e-24 102
MS.gene75458.t1 MTR_2g105330 25.000 464 291 20 13 461 7 428 1.71e-23 102
MS.gene75458.t1 MTR_3g098980 25.622 402 259 12 66 462 66 432 1.82e-23 102
MS.gene75458.t1 MTR_4g007540 24.784 464 295 17 13 462 7 430 9.16e-23 100
MS.gene75458.t1 MTR_4g022825 25.109 458 294 17 12 456 6 427 5.19e-21 95.5
MS.gene75458.t1 MTR_4g022800 24.678 466 300 17 5 456 1 429 8.10e-21 95.1
MS.gene75458.t1 MTR_4g022720 24.722 449 286 17 20 456 14 422 5.45e-20 92.4
MS.gene75458.t1 MTR_7g014180 33.889 180 102 4 10 185 8 174 9.02e-20 87.0
MS.gene75458.t1 MTR_4g022670 24.249 466 309 14 5 460 1 432 6.85e-19 89.4
MS.gene75458.t1 MTR_3g026950 24.008 479 294 21 11 458 4 443 8.27e-19 89.0
MS.gene75458.t1 MTR_4g015180 25.911 494 285 21 11 453 8 471 3.30e-18 87.4
MS.gene75458.t1 MTR_4g094828 24.449 454 285 20 23 456 22 437 1.13e-17 85.5
MS.gene75458.t1 MTR_7g085930 23.308 399 260 12 47 421 40 416 3.21e-17 84.3
MS.gene75458.t1 MTR_3g049150 23.472 409 245 17 63 440 52 423 3.68e-16 80.9
MS.gene75458.t1 MTR_0190s0020 24.396 455 280 19 21 456 20 429 8.33e-16 79.7
MS.gene75458.t1 MTR_4g127650 24.301 465 295 19 17 458 18 448 9.40e-16 79.7
MS.gene75458.t1 MTR_3g070170 25.208 480 297 19 11 460 14 461 9.88e-16 79.7
MS.gene75458.t1 MTR_4g022290 24.027 437 263 19 30 446 35 422 1.73e-15 79.0
MS.gene75458.t1 MTR_3g086020 23.418 474 271 21 8 460 4 406 2.69e-15 78.2
MS.gene75458.t1 MTR_2g104210 68.000 50 11 2 273 320 1 47 3.46e-15 70.5
MS.gene75458.t1 MTR_3g088420 25.450 444 267 19 30 456 24 420 3.83e-15 77.8
MS.gene75458.t1 MTR_7g086000 23.585 424 277 10 17 420 12 408 4.82e-15 77.4
MS.gene75458.t1 MTR_4g094832 27.215 316 192 14 156 460 133 421 5.02e-14 74.3
MS.gene75458.t1 MTR_4g097090 24.444 450 276 17 17 444 17 424 2.38e-13 72.4
MS.gene75458.t1 MTR_8g041770 27.241 290 165 13 154 430 144 400 2.91e-13 72.0
MS.gene75458.t1 MTR_7g014205 32.174 115 65 2 314 426 7 110 8.11e-13 65.5
MS.gene75458.t1 MTR_8g079710 23.288 438 269 17 40 456 41 432 1.91e-12 69.3
MS.gene75458.t1 MTR_7g014210 35.922 103 63 2 327 426 24 126 8.58e-12 63.9
MS.gene75458.t1 MTR_4g055170 26.171 363 228 18 15 371 18 346 1.69e-11 66.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene75458.t1 AT1G03940 33.126 483 276 20 10 469 9 467 2.36e-70 231
MS.gene75458.t1 AT3G29670 31.224 474 279 15 11 466 5 449 5.67e-56 192
MS.gene75458.t1 AT3G29680 31.579 456 272 14 28 470 23 451 7.52e-56 192
MS.gene75458.t1 AT3G29635 31.637 452 276 13 28 468 27 456 1.64e-55 192
MS.gene75458.t1 AT5G61160 29.032 465 294 14 10 461 4 445 2.66e-52 183
MS.gene75458.t1 AT5G39090 28.326 466 299 13 12 467 8 448 7.26e-48 171
MS.gene75458.t1 AT5G39080 28.302 477 303 15 11 468 7 463 1.16e-47 171
MS.gene75458.t1 AT1G03495 33.427 356 203 15 9 351 8 342 1.25e-47 167
MS.gene75458.t1 AT3G29590 31.780 472 275 17 11 467 10 449 1.54e-47 170
MS.gene75458.t1 AT5G39050 29.979 477 296 15 10 467 11 468 8.39e-44 160
MS.gene75458.t1 AT5G48930 23.644 461 304 16 13 462 7 430 9.42e-21 94.7
MS.gene75458.t1 AT5G41040 24.408 422 259 16 13 421 21 395 1.05e-20 94.7
MS.gene75458.t1 AT5G41040 24.408 422 259 16 13 421 37 411 1.51e-20 94.4
MS.gene75458.t1 AT3G50270 23.992 471 288 19 6 450 3 429 4.47e-18 87.0
MS.gene75458.t1 AT3G50280 24.887 442 261 19 7 424 2 396 7.17e-18 86.3
MS.gene75458.t1 AT5G63560 23.487 413 268 15 13 421 13 381 7.26e-18 85.9
MS.gene75458.t1 AT2G39980 24.194 496 296 21 11 460 10 471 2.50e-17 84.7
MS.gene75458.t1 AT5G23940 25.652 460 271 20 30 455 25 447 3.16e-17 84.3
MS.gene75458.t1 AT5G42830 23.866 419 263 15 61 460 59 440 3.37e-17 84.3
MS.gene75458.t1 AT5G57840 24.375 480 299 17 10 468 4 440 3.44e-17 84.0
MS.gene75458.t1 AT2G19070 23.333 450 288 17 17 443 12 427 4.53e-17 84.0
MS.gene75458.t1 AT5G38130 22.788 452 286 15 7 444 22 424 2.10e-16 81.6
MS.gene75458.t1 AT5G01210 25.159 473 295 18 12 453 9 453 1.19e-15 79.7
MS.gene75458.t1 AT5G07850 24.738 477 298 22 7 460 6 444 1.94e-15 79.0
MS.gene75458.t1 AT1G27620 26.190 420 251 16 13 421 13 384 1.79e-14 75.9
MS.gene75458.t1 AT5G07860 24.788 472 292 19 7 456 6 436 3.12e-14 75.1
MS.gene75458.t1 AT3G29690 30.667 150 99 3 320 467 33 179 4.37e-13 68.2
MS.gene75458.t1 AT5G07870 23.864 440 279 17 7 423 6 412 4.37e-12 68.6
MS.gene75458.t1 AT3G50280 25.260 289 171 12 151 424 8 266 7.40e-12 66.6
MS.gene75458.t1 AT4G31910 22.917 384 245 12 11 375 11 362 2.40e-11 66.2

Find 74 sgRNAs with CRISPR-Local

Find 102 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAATACCAGAGGGGTATTT+TGG 0.151654 3.3:-73000634 MS.gene75458:CDS
ACAAATTTAGATAGAAATTT+TGG 0.182553 3.3:+73000775 None:intergenic
TGAGATGGTGCATGCGTTTA+AGG 0.195519 3.3:-73000362 MS.gene75458:CDS
GGAGAAGGTGGACTTGAGTT+TGG 0.247995 3.3:-73000313 MS.gene75458:CDS
AATGTTTATGAGACCGATTT+TGG 0.269268 3.3:-73000406 MS.gene75458:CDS
GCAATCATTTCATGAAATCT+TGG 0.347391 3.3:-73001077 MS.gene75458:CDS
TGCACCATCTCAACTTTAAC+AGG 0.358365 3.3:+73000373 None:intergenic
AGTTTATGTTCTGCTCCTAT+AGG 0.377376 3.3:+73001621 None:intergenic
GTTGTTGTTGTTCTTGTTGC+AGG 0.384008 3.3:+73001576 None:intergenic
CAGCTACATCACCTCCTTGA+TGG 0.384620 3.3:+73001046 None:intergenic
CACATTCACCCTTCCATTGT+TGG 0.385846 3.3:-73001178 MS.gene75458:CDS
GAGAAGGTGGACTTGAGTTT+GGG 0.395274 3.3:-73000312 MS.gene75458:CDS
AATAAGCGTTTAGCGTAGAT+TGG 0.403428 3.3:+73001513 None:intergenic
AGTAAAACTATGTATATGTC+TGG 0.416871 3.3:-73000463 MS.gene75458:CDS
GTCATTAATATCTTCAATCC+TGG 0.423090 3.3:+73001212 None:intergenic
TAAGAAATGGCAAAACCTAT+AGG 0.429096 3.3:-73001636 None:intergenic
GAAAGAGATTGTTTGAGAGA+TGG 0.430195 3.3:+73001441 None:intergenic
ATAAGATTCTCAAGTCCTCT+TGG 0.434524 3.3:+73000979 None:intergenic
CATCATTTCTTCCCTCTCGC+TGG 0.448126 3.3:-73001408 MS.gene75458:CDS
GGTGGTGTTTGTTGGAGAGA+TGG 0.452853 3.3:+73001286 None:intergenic
AGGTCTTCCAAATCCAAAAT+CGG 0.460413 3.3:+73000393 None:intergenic
CCCAACCATGGTGTTTGCGT+TGG 0.463801 3.3:-73001135 MS.gene75458:CDS
TAAGATTCTCAAGTCCTCTT+GGG 0.479124 3.3:+73000980 None:intergenic
AAAGGTGACGGAGTCTTCTT+CGG 0.484341 3.3:+73001338 None:intergenic
GCCAACGCAAACACCATGGT+TGG 0.488721 3.3:+73001134 None:intergenic
TGGTTGGTTGAATGAGGAAA+AGG 0.489129 3.3:+73001483 None:intergenic
GAGATGGTGCATGCGTTTAA+GGG 0.496036 3.3:-73000361 MS.gene75458:CDS
TTTGGAAAAGAAGAAATTGA+GGG 0.502317 3.3:-73000853 MS.gene75458:CDS
AGATATTAATGACATTGAAA+AGG 0.509159 3.3:-73001202 MS.gene75458:CDS
CAATATTAACACACAAAACC+AGG 0.512389 3.3:-73001230 MS.gene75458:CDS
CCAACGCAAACACCATGGTT+GGG 0.516697 3.3:+73001135 None:intergenic
TGTTGTTAAGGTAATTGAAA+AGG 0.526288 3.3:-73000542 MS.gene75458:CDS
CTTGCAAAGCCAACAATGGA+AGG 0.529919 3.3:+73001169 None:intergenic
TCTTCGGTGCAGCGAATGAA+AGG 0.530046 3.3:+73001354 None:intergenic
TGGGTTGGTACTTAAAAGTG+AGG 0.534033 3.3:-73000293 MS.gene75458:CDS
GGAAATCAATTGTTTCTGCA+TGG 0.534473 3.3:-73000442 MS.gene75458:CDS
AAGTGCAACGATGAAGAGAA+AGG 0.537353 3.3:-73000593 MS.gene75458:CDS
TCTCTTGCTGAAAGTGGAGA+TGG 0.549776 3.3:-73000334 MS.gene75458:CDS
GTCTCATAAACATTAAACTT+AGG 0.550716 3.3:+73000415 None:intergenic
GGTGTGTCTCTTGCTGAAAG+TGG 0.551045 3.3:-73000340 MS.gene75458:CDS
CTCGTAAAGATGTAGAAGAC+TGG 0.552031 3.3:-73000495 MS.gene75458:CDS
CGATGATTCGATGATGGTAA+AGG 0.563360 3.3:+73001320 None:intergenic
GATGAAGAGAAAGGACATGA+AGG 0.568217 3.3:-73000584 MS.gene75458:CDS
GTTGCTCAAAGTCAAAGCAC+TGG 0.572117 3.3:-73000910 MS.gene75458:CDS
TTCTCTTCTCTCATTCAACA+AGG 0.574223 3.3:-73000259 MS.gene75458:CDS
CAGTTTCCAAAATACCCCTC+TGG 0.574352 3.3:+73000628 None:intergenic
TCTCTTCTCTCATTCAACAA+GGG 0.577011 3.3:-73000258 MS.gene75458:CDS
TTCGATGATGGTAAAGGTGA+CGG 0.584351 3.3:+73001326 None:intergenic
CAGTCTTCTACATCTTTACG+AGG 0.588222 3.3:+73000496 None:intergenic
ATGAAGAGAAAGGACATGAA+GGG 0.596540 3.3:-73000583 MS.gene75458:CDS
GAAATGAGATTTCCAGCGAG+AGG 0.596654 3.3:+73001396 None:intergenic
AGGTGGACTTGAGTTTGGGT+TGG 0.597792 3.3:-73000308 MS.gene75458:CDS
CATTACATATTGTCACGTGA+TGG 0.601868 3.3:-73001112 MS.gene75458:CDS
ACATATTGTCACGTGATGGA+TGG 0.602963 3.3:-73001108 MS.gene75458:CDS
AAATGAGATTTCCAGCGAGA+GGG 0.605378 3.3:+73001397 None:intergenic
CTTGGCTACTCAATACCAGA+GGG 0.607440 3.3:-73000643 MS.gene75458:CDS
GTCTCAATATTTCCCAACCA+TGG 0.616555 3.3:-73001147 MS.gene75458:CDS
ATCTTGCGATGATTCGATGA+TGG 0.618919 3.3:+73001314 None:intergenic
GAGACTTGCAAAGCCAACAA+TGG 0.623901 3.3:+73001165 None:intergenic
TGTGTGTTAATATTGGAACA+AGG 0.625336 3.3:+73001238 None:intergenic
TTGGAAAAGAAGAAATTGAG+GGG 0.626217 3.3:-73000852 MS.gene75458:CDS
GACCAGCAAAATGCAAGTCG+AGG 0.629102 3.3:+73001535 None:intergenic
GAAAGTGGAGATGGAGAAGG+TGG 0.639469 3.3:-73000325 MS.gene75458:CDS
AAGACCTGTTAAAGTTGAGA+TGG 0.641370 3.3:-73000377 MS.gene75458:CDS
TTGCAAAGCCAACAATGGAA+GGG 0.646182 3.3:+73001170 None:intergenic
TGTGATTGCAGAGATAGACT+TGG 0.654998 3.3:-73000661 MS.gene75458:CDS
AAAACTTCTCTATCAAAACA+AGG 0.666225 3.3:+73001009 None:intergenic
GCAATGCATAGAAATGATGA+CGG 0.667461 3.3:-73000715 MS.gene75458:CDS
TAATGCCAACGCAAACACCA+TGG 0.675041 3.3:+73001130 None:intergenic
TGCAAGTCGAGGAATGTGAG+AGG 0.687948 3.3:+73001546 None:intergenic
GCTGAAAGTGGAGATGGAGA+AGG 0.692838 3.3:-73000328 MS.gene75458:CDS
ACTTGGCTACTCAATACCAG+AGG 0.710749 3.3:-73000644 MS.gene75458:CDS
ACTTCTCTATCAAAACAAGG+TGG 0.730371 3.3:+73001012 None:intergenic
TTGGCTACTCAATACCAGAG+GGG 0.789894 3.3:-73000642 MS.gene75458:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ACAAATTTAGATAGAAATTT+TGG + chr3.3:73001095-73001114 None:intergenic 15.0%
!!! ATTTTTTTACAAGAAAATCT+TGG - chr3.3:73000922-73000941 MS.gene75458:CDS 15.0%
!!! TTTAAGGTAATTATTGTTTT+TGG - chr3.3:73000996-73001015 MS.gene75458:CDS 15.0%
!! AGATATTAATGACATTGAAA+AGG - chr3.3:73000665-73000684 MS.gene75458:CDS 20.0%
!!! TATTTTCTTTGAGATTTTTC+AGG + chr3.3:73000605-73000624 None:intergenic 20.0%
! AAAACTTCTCTATCAAAACA+AGG + chr3.3:73000861-73000880 None:intergenic 25.0%
! AGTAAAACTATGTATATGTC+TGG - chr3.3:73001404-73001423 MS.gene75458:CDS 25.0%
! GTCTCATAAACATTAAACTT+AGG + chr3.3:73001455-73001474 None:intergenic 25.0%
! TGTTGTTAAGGTAATTGAAA+AGG - chr3.3:73001325-73001344 MS.gene75458:CDS 25.0%
! TTTGGAAAAGAAGAAATTGA+GGG - chr3.3:73001014-73001033 MS.gene75458:CDS 25.0%
!! AGAACATGAAGATTCTTTTA+AGG - chr3.3:73000980-73000999 MS.gene75458:CDS 25.0%
!! TTGTAACTAGTGCTTTTATT+TGG - chr3.3:73001114-73001133 MS.gene75458:CDS 25.0%
!!! TAGTTTTGTTGATGTTGTTA+AGG - chr3.3:73001313-73001332 MS.gene75458:CDS 25.0%
!!! TGTAACTAGTGCTTTTATTT+GGG - chr3.3:73001115-73001134 MS.gene75458:CDS 25.0%
!!! TTTTGATAGAGAAGTTTTGA+GGG - chr3.3:73000863-73000882 MS.gene75458:CDS 25.0%
!!! TTTTGGAAAAGAAGAAATTG+AGG - chr3.3:73001013-73001032 MS.gene75458:CDS 25.0%
AAATTGAGGGGATGAAAAAA+TGG - chr3.3:73001027-73001046 MS.gene75458:CDS 30.0%
AATTGAGGGGATGAAAAAAT+GGG - chr3.3:73001028-73001047 MS.gene75458:CDS 30.0%
CAATATTAACACACAAAACC+AGG - chr3.3:73000637-73000656 MS.gene75458:CDS 30.0%
GCAATCATTTCATGAAATCT+TGG - chr3.3:73000790-73000809 MS.gene75458:CDS 30.0%
GTCATTAATATCTTCAATCC+TGG + chr3.3:73000658-73000677 None:intergenic 30.0%
TGTGTGTTAATATTGGAACA+AGG + chr3.3:73000632-73000651 None:intergenic 30.0%
TTGGAAAAGAAGAAATTGAG+GGG - chr3.3:73001015-73001034 MS.gene75458:CDS 30.0%
!! AATGTTTATGAGACCGATTT+TGG - chr3.3:73001461-73001480 MS.gene75458:CDS 30.0%
!! GTTTTGATAGAGAAGTTTTG+AGG - chr3.3:73000862-73000881 MS.gene75458:CDS 30.0%
!!! CTGGTTTTGTGTGTTAATAT+TGG + chr3.3:73000639-73000658 None:intergenic 30.0%
!!! GAAGTGTTGTTTTGCAAAAA+TGG + chr3.3:73000407-73000426 None:intergenic 30.0%
!!! TGTTGTTTTGCAAAAATGGT+TGG + chr3.3:73000403-73000422 None:intergenic 30.0%
!!! TTTCTTTGAGATTTTTCAGG+TGG + chr3.3:73000602-73000621 None:intergenic 30.0%
AAGACCTGTTAAAGTTGAGA+TGG - chr3.3:73001490-73001509 MS.gene75458:CDS 35.0%
AATAAGCGTTTAGCGTAGAT+TGG + chr3.3:73000357-73000376 None:intergenic 35.0%
ACTTCTCTATCAAAACAAGG+TGG + chr3.3:73000858-73000877 None:intergenic 35.0%
AGGTCTTCCAAATCCAAAAT+CGG + chr3.3:73001477-73001496 None:intergenic 35.0%
AGTTTATGTTCTGCTCCTAT+AGG + chr3.3:73000249-73000268 None:intergenic 35.0%
ATAAGATTCTCAAGTCCTCT+TGG + chr3.3:73000891-73000910 None:intergenic 35.0%
ATGAAGAGAAAGGACATGAA+GGG - chr3.3:73001284-73001303 MS.gene75458:CDS 35.0%
CATTACATATTGTCACGTGA+TGG - chr3.3:73000755-73000774 MS.gene75458:CDS 35.0%
GAAAGAGATTGTTTGAGAGA+TGG + chr3.3:73000429-73000448 None:intergenic 35.0%
GCAATGCATAGAAATGATGA+CGG - chr3.3:73001152-73001171 MS.gene75458:CDS 35.0%
TAAGATTCTCAAGTCCTCTT+GGG + chr3.3:73000890-73000909 None:intergenic 35.0%
TCTCTTCTCTCATTCAACAA+GGG - chr3.3:73001609-73001628 MS.gene75458:CDS 35.0%
TTCTCTTCTCTCATTCAACA+AGG - chr3.3:73001608-73001627 MS.gene75458:CDS 35.0%
! CAAAAATGGTTGGTTGAATG+AGG + chr3.3:73000393-73000412 None:intergenic 35.0%
!! AAAAATGGGTGCTGAATCAA+TGG - chr3.3:73001042-73001061 MS.gene75458:CDS 35.0%
!! GGAAATCAATTGTTTCTGCA+TGG - chr3.3:73001425-73001444 MS.gene75458:CDS 35.0%
!! TATGAGACCGATTTTGGATT+TGG - chr3.3:73001467-73001486 MS.gene75458:CDS 35.0%
!! TCTTGGTCTTTTATCCATCA+AGG - chr3.3:73000807-73000826 MS.gene75458:CDS 35.0%
!!! ATTTTTCAGGTGGTGTTTGT+TGG + chr3.3:73000592-73000611 None:intergenic 35.0%
!!! TGCTTTTATTTGGGCTAGTA+TGG - chr3.3:73001124-73001143 MS.gene75458:CDS 35.0%
AAATGAGATTTCCAGCGAGA+GGG + chr3.3:73000473-73000492 None:intergenic 40.0%
AAGTGCAACGATGAAGAGAA+AGG - chr3.3:73001274-73001293 MS.gene75458:CDS 40.0%
ATCTTGCGATGATTCGATGA+TGG + chr3.3:73000556-73000575 None:intergenic 40.0%
CAGTCTTCTACATCTTTACG+AGG + chr3.3:73001374-73001393 None:intergenic 40.0%
CTCGTAAAGATGTAGAAGAC+TGG - chr3.3:73001372-73001391 MS.gene75458:CDS 40.0%
GATGAAGAGAAAGGACATGA+AGG - chr3.3:73001283-73001302 MS.gene75458:CDS 40.0%
GTCTCAATATTTCCCAACCA+TGG - chr3.3:73000720-73000739 MS.gene75458:CDS 40.0%
TGCACCATCTCAACTTTAAC+AGG + chr3.3:73001497-73001516 None:intergenic 40.0%
TGTGATTGCAGAGATAGACT+TGG - chr3.3:73001206-73001225 MS.gene75458:CDS 40.0%
TTGCAAAGCCAACAATGGAA+GGG + chr3.3:73000700-73000719 None:intergenic 40.0%
! ACATATTGTCACGTGATGGA+TGG - chr3.3:73000759-73000778 MS.gene75458:CDS 40.0%
! ATGAAAGGTTTTTGTGGTGG+TGG + chr3.3:73000501-73000520 None:intergenic 40.0%
! CAGCGAATGAAAGGTTTTTG+TGG + chr3.3:73000507-73000526 None:intergenic 40.0%
! CGAATGAAAGGTTTTTGTGG+TGG + chr3.3:73000504-73000523 None:intergenic 40.0%
! CGATGATTCGATGATGGTAA+AGG + chr3.3:73000550-73000569 None:intergenic 40.0%
! GTTGTTGTTGTTCTTGTTGC+AGG + chr3.3:73000294-73000313 None:intergenic 40.0%
! TGGTCTTTTATCCATCAAGG+AGG - chr3.3:73000810-73000829 MS.gene75458:CDS 40.0%
! TGGTTGGTTGAATGAGGAAA+AGG + chr3.3:73000387-73000406 None:intergenic 40.0%
! TTCGATGATGGTAAAGGTGA+CGG + chr3.3:73000544-73000563 None:intergenic 40.0%
!! TGGGTTGGTACTTAAAAGTG+AGG - chr3.3:73001574-73001593 MS.gene75458:CDS 40.0%
!!! TCAATACCAGAGGGGTATTT+TGG - chr3.3:73001233-73001252 MS.gene75458:CDS 40.0%
ACTTGGCTACTCAATACCAG+AGG - chr3.3:73001223-73001242 MS.gene75458:CDS 45.0%
CACATTCACCCTTCCATTGT+TGG - chr3.3:73000689-73000708 MS.gene75458:CDS 45.0%
CAGTTTCCAAAATACCCCTC+TGG + chr3.3:73001242-73001261 None:intergenic 45.0%
CTTGCAAAGCCAACAATGGA+AGG + chr3.3:73000701-73000720 None:intergenic 45.0%
CTTGGCTACTCAATACCAGA+GGG - chr3.3:73001224-73001243 MS.gene75458:CDS 45.0%
GAAATGAGATTTCCAGCGAG+AGG + chr3.3:73000474-73000493 None:intergenic 45.0%
GAGACTTGCAAAGCCAACAA+TGG + chr3.3:73000705-73000724 None:intergenic 45.0%
GAGATGGTGCATGCGTTTAA+GGG - chr3.3:73001506-73001525 MS.gene75458:CDS 45.0%
GTTGCTCAAAGTCAAAGCAC+TGG - chr3.3:73000957-73000976 MS.gene75458:CDS 45.0%
TAATGCCAACGCAAACACCA+TGG + chr3.3:73000740-73000759 None:intergenic 45.0%
TCTCTTGCTGAAAGTGGAGA+TGG - chr3.3:73001533-73001552 MS.gene75458:CDS 45.0%
TGAGATGGTGCATGCGTTTA+AGG - chr3.3:73001505-73001524 MS.gene75458:CDS 45.0%
TTGGCTACTCAATACCAGAG+GGG - chr3.3:73001225-73001244 MS.gene75458:CDS 45.0%
! GAGAAGGTGGACTTGAGTTT+GGG - chr3.3:73001555-73001574 MS.gene75458:CDS 45.0%
!! AAAGGTGACGGAGTCTTCTT+CGG + chr3.3:73000532-73000551 None:intergenic 45.0%
!! TTCCTCGACTTGCATTTTGC+TGG - chr3.3:73000330-73000349 MS.gene75458:CDS 45.0%
!!! AAAGGTTTTTGTGGTGGTGG+TGG + chr3.3:73000498-73000517 None:intergenic 45.0%
CAGCTACATCACCTCCTTGA+TGG + chr3.3:73000824-73000843 None:intergenic 50.0%
CATCATTTCTTCCCTCTCGC+TGG - chr3.3:73000459-73000478 MS.gene75458:CDS 50.0%
CCAACGCAAACACCATGGTT+GGG + chr3.3:73000735-73000754 None:intergenic 50.0%
GAAAGTGGAGATGGAGAAGG+TGG - chr3.3:73001542-73001561 MS.gene75458:CDS 50.0%
GACCAGCAAAATGCAAGTCG+AGG + chr3.3:73000335-73000354 None:intergenic 50.0%
GCTGAAAGTGGAGATGGAGA+AGG - chr3.3:73001539-73001558 MS.gene75458:CDS 50.0%
GGTGTGTCTCTTGCTGAAAG+TGG - chr3.3:73001527-73001546 MS.gene75458:CDS 50.0%
TGCAAGTCGAGGAATGTGAG+AGG + chr3.3:73000324-73000343 None:intergenic 50.0%
! AGGTGGACTTGAGTTTGGGT+TGG - chr3.3:73001559-73001578 MS.gene75458:CDS 50.0%
! GGAGAAGGTGGACTTGAGTT+TGG - chr3.3:73001554-73001573 MS.gene75458:CDS 50.0%
! GGTGGTGTTTGTTGGAGAGA+TGG + chr3.3:73000584-73000603 None:intergenic 50.0%
! TCTTCGGTGCAGCGAATGAA+AGG + chr3.3:73000516-73000535 None:intergenic 50.0%
!!! GAAGTTTTGAGGGACCCAAG+AGG - chr3.3:73000873-73000892 MS.gene75458:CDS 50.0%
CCCAACCATGGTGTTTGCGT+TGG - chr3.3:73000732-73000751 MS.gene75458:CDS 55.0%
GCCAACGCAAACACCATGGT+TGG + chr3.3:73000736-73000755 None:intergenic 55.0%


Chromosome Type Strat End Strand Name
chr3.3 gene 73000237 73001652 73000237 ID=MS.gene75458
chr3.3 mRNA 73000237 73001652 73000237 ID=MS.gene75458.t1;Parent=MS.gene75458
chr3.3 exon 73000237 73001652 73000237 ID=MS.gene75458.t1.exon1;Parent=MS.gene75458.t1
chr3.3 CDS 73000237 73001652 73000237 ID=cds.MS.gene75458.t1;Parent=MS.gene75458.t1
Gene Sequence

>MS.gene75458

ATGGCAAAACCTATAGGAGCAGAACATAAACTTATTGAGCAAACTCTTGTGTTTCCTGCAACAAGAACAACAACAACTTCTCTTCCTCTCACATTCCTCGACTTGCATTTTGCTGGTCCAATCTACGCTAAACGCTTATTCTTCTATCCTTTTCCTCATTCAACCAACCATTTTTGCAAAACAACACTTCCATCTCTCAAACAATCTCTTTCTTGTGTTCTTCATCATTTCTTCCCTCTCGCTGGAAATCTCATTTCTCCACCACCACCACAAAAACCTTTCATTCGCTGCACCGAAGAAGACTCCGTCACCTTTACCATCATCGAATCATCGCAAGATTTCAACCATCTCTCCAACAAACACCACCTGAAAAATCTCAAAGAAAATAATAACCTTGTTCCAATATTAACACACAAAACCAGGATTGAAGATATTAATGACATTGAAAAGGACACATTCACCCTTCCATTGTTGGCTTTGCAAGTCTCAATATTTCCCAACCATGGTGTTTGCGTTGGCATTACATATTGTCACGTGATGGATGGTAACAGTTGCAATCATTTCATGAAATCTTGGTCTTTTATCCATCAAGGAGGTGATGTAGCTGAATTGAAGTCACCACCTTGTTTTGATAGAGAAGTTTTGAGGGACCCAAGAGGACTTGAGAATCTTATTTTAAGAGATTATTTTTTTACAAGAAAATCTTGGAAGTTTAGACTCGTTGCTCAAAGTCAAAGCACTGGAGAACATGAAGATTCTTTTAAGGTAATTATTGTTTTTGGAAAAGAAGAAATTGAGGGGATGAAAAAATGGGTGCTGAATCAATGGAAGAAAAATGATAATGAAATCAACGTGCCAAAATTTCTATCTAAATTTGTTGTAACTAGTGCTTTTATTTGGGCTAGTATGGTTAAAGCAATGCATAGAAATGATGACGGTGATGAAAAAGATGAGTACTTTTGTTTCACATGTGATTGCAGAGATAGACTTGGCTACTCAATACCAGAGGGGTATTTTGGAAACTGTGTAGTGTCTAAAAGTGCAACGATGAAGAGAAAGGACATGAAGGGAAAAAATAGTTTTGTTGATGTTGTTAAGGTAATTGAAAAGGCTGTTAATGAGATAAAAAATGAACCTCGTAAAGATGTAGAAGACTGGTTTGAATTAAGTAAAACTATGTATATGTCTGGAAATCAATTGTTTCTGCATGGATCACCTAAGTTTAATGTTTATGAGACCGATTTTGGATTTGGAAGACCTGTTAAAGTTGAGATGGTGCATGCGTTTAAGGGTGTGTCTCTTGCTGAAAGTGGAGATGGAGAAGGTGGACTTGAGTTTGGGTTGGTACTTAAAAGTGAGGAATTTGAATATTTCTCTTCTCTCATTCAACAAGGGCTTGAAGTTTTTAAATATTAA
Protein sequence

>MS.gene75458.t1

MAKPIGAEHKLIEQTLVFPATRTTTTSLPLTFLDLHFAGPIYAKRLFFYPFPHSTNHFCKTTLPSLKQSLSCVLHHFFPLAGNLISPPPPQKPFIRCTEEDSVTFTIIESSQDFNHLSNKHHLKNLKENNNLVPILTHKTRIEDINDIEKDTFTLPLLALQVSIFPNHGVCVGITYCHVMDGNSCNHFMKSWSFIHQGGDVAELKSPPCFDREVLRDPRGLENLILRDYFFTRKSWKFRLVAQSQSTGEHEDSFKVIIVFGKEEIEGMKKWVLNQWKKNDNEINVPKFLSKFVVTSAFIWASMVKAMHRNDDGDEKDEYFCFTCDCRDRLGYSIPEGYFGNCVVSKSATMKRKDMKGKNSFVDVVKVIEKAVNEIKNEPRKDVEDWFELSKTMYMSGNQLFLHGSPKFNVYETDFGFGRPVKVEMVHAFKGVSLAESGDGEGGLEFGLVLKSEEFEYFSSLIQQGLEVFKY