Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene75942.t1 | XP_013443133.1 | 62.9 | 329 | 67 | 6 | 1 | 321 | 1 | 282 | 1.80E-100 | 375.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene75942.t1 | Q0IGK1 | 53.6 | 181 | 78 | 2 | 137 | 317 | 268 | 442 | 2.1e-49 | 197.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene75942.t1 | A0A072TJT5 | 62.9 | 329 | 67 | 6 | 1 | 321 | 1 | 282 | 1.3e-100 | 375.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene056638 | MS.gene75942 | 0.804272 | 2.34E-49 | -1.69E-46 |
| MS.gene059170 | MS.gene75942 | 0.826852 | 2.16E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene75942.t1 | MTR_0037s0060 | 68.182 | 330 | 48 | 6 | 1 | 321 | 1 | 282 | 2.55e-147 | 416 |
| MS.gene75942.t1 | MTR_0037s0250 | 68.923 | 325 | 46 | 7 | 1 | 317 | 1 | 278 | 6.72e-142 | 402 |
| MS.gene75942.t1 | MTR_0037s0250 | 66.553 | 293 | 43 | 7 | 1 | 285 | 4 | 249 | 3.11e-117 | 338 |
| MS.gene75942.t1 | MTR_6g033105 | 58.515 | 229 | 32 | 6 | 1 | 218 | 1 | 177 | 4.76e-71 | 219 |
| MS.gene75942.t1 | MTR_6g034730 | 85.938 | 64 | 9 | 0 | 219 | 282 | 4 | 67 | 2.88e-32 | 115 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene75942.t1 | AT3G07930 | 60.526 | 152 | 55 | 2 | 166 | 317 | 180 | 326 | 1.61e-63 | 204 |
| MS.gene75942.t1 | AT3G07930 | 60.526 | 152 | 55 | 2 | 166 | 317 | 296 | 442 | 2.90e-62 | 204 |
| MS.gene75942.t1 | AT3G07930 | 62.264 | 53 | 15 | 2 | 166 | 218 | 296 | 343 | 5.46e-14 | 72.4 |
| MS.gene75942.t1 | AT3G07930 | 64.583 | 48 | 12 | 2 | 166 | 213 | 296 | 338 | 1.90e-12 | 67.8 |
Find 55 sgRNAs with CRISPR-Local
Find 256 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGAAAACACCGGATAATAAT+TGG | 0.173506 | 6.4:-4328576 | MS.gene75942:CDS |
| AGGAAATAGAAGAGGTAATA+AGG | 0.220049 | 6.4:-4326813 | MS.gene75942:CDS |
| CGAGAGTCATTGAAAATCTT+AGG | 0.262380 | 6.4:+4328688 | None:intergenic |
| TCTTCAACTTTCTGAAAATA+AGG | 0.272553 | 6.4:+4328841 | None:intergenic |
| TCTTCAACTTTCTGAAAATA+AGG | 0.272553 | 6.4:+4328898 | None:intergenic |
| TTGAAGATTTAGAACAGTTT+AGG | 0.299387 | 6.4:-4328768 | MS.gene75942:CDS |
| ATCACAAGCTGAACGAATAT+TGG | 0.299436 | 6.4:-4324865 | MS.gene75942:CDS |
| GAACGAGACACGACCCTTTG+TGG | 0.398404 | 6.4:+4328802 | None:intergenic |
| GAAGAGGTAATAAGGACATT+AGG | 0.402181 | 6.4:-4326805 | MS.gene75942:CDS |
| TGCATACAAGTTTCTGCGTC+TGG | 0.405102 | 6.4:+4326847 | None:intergenic |
| TAAGGAGACACGACCCTCTC+TGG | 0.408073 | 6.4:+4328916 | None:intergenic |
| CATCTATCAGCCTTAAGAAA+AGG | 0.450995 | 6.4:+4328616 | None:intergenic |
| GAAAACACCGGATAATAATT+GGG | 0.469834 | 6.4:-4328575 | MS.gene75942:CDS |
| GAATTTCCTTCGCAAAAGAA+AGG | 0.473593 | 6.4:-4324843 | MS.gene75942:CDS |
| CAATCACCCTCCATGGATCA+TGG | 0.476838 | 6.4:+4328494 | None:intergenic |
| GAACCGCACTCAAGGAAAAC+AGG | 0.477107 | 6.4:-4328455 | MS.gene75942:intron |
| TTTCAGTAAGTATGCGTACA+AGG | 0.478351 | 6.4:-4329040 | MS.gene75942:CDS |
| GAAAGTTGAAGAGTGTAAAG+TGG | 0.483269 | 6.4:-4328830 | MS.gene75942:CDS |
| GAAAGTTGAAGAGTGTAAAG+TGG | 0.483269 | 6.4:-4328887 | MS.gene75942:CDS |
| AGGTGGATTCTTGTCGTGCT+AGG | 0.485309 | 6.4:-4328990 | MS.gene75942:CDS |
| CATTAGGTCTTCAAGTGAAA+AGG | 0.489628 | 6.4:-4326789 | MS.gene75942:CDS |
| CATGGAAATGAAACTCTTGA+AGG | 0.492533 | 6.4:+4328512 | None:intergenic |
| AGTTTCATTTCCATGATCCA+TGG | 0.498865 | 6.4:-4328504 | MS.gene75942:CDS |
| TAGAAAGAGTGTTGTTGAGG+TGG | 0.504482 | 6.4:-4329007 | MS.gene75942:CDS |
| GGATTCTTGTCGTGCTAGGA+AGG | 0.526763 | 6.4:-4328986 | MS.gene75942:CDS |
| GAAAGTCGAAGAGTGTAAAG+TGG | 0.535445 | 6.4:-4328944 | MS.gene75942:CDS |
| GGAGGCACCCAATTATTATC+CGG | 0.546937 | 6.4:+4328568 | None:intergenic |
| GTGAATACTTAACTGAGACT+TGG | 0.550079 | 6.4:-4326741 | MS.gene75942:CDS |
| GATGTAGAGAGGCTTACAAA+AGG | 0.552426 | 6.4:-4328597 | MS.gene75942:CDS |
| AAGAAGAGAGGAAATAGAAG+AGG | 0.558019 | 6.4:-4326821 | MS.gene75942:CDS |
| CATATAGCAATCACCCTCCA+TGG | 0.559914 | 6.4:+4328487 | None:intergenic |
| TAAAGTGGAGCATCCACAAA+GGG | 0.571179 | 6.4:-4328815 | MS.gene75942:CDS |
| ATACTCTTGAACCGCACTCA+AGG | 0.580789 | 6.4:-4328463 | MS.gene75942:CDS |
| CGTACGCAAACTCATTGTAA+TGG | 0.583055 | 6.4:+4329073 | None:intergenic |
| TCTTAGAAAGAGTGTTGTTG+AGG | 0.587653 | 6.4:-4329010 | MS.gene75942:CDS |
| TCATTTCCATGATCCATGGA+GGG | 0.594814 | 6.4:-4328500 | MS.gene75942:CDS |
| ACTGTGCAGTTCAGTAACAT+AGG | 0.599692 | 6.4:+4326717 | None:intergenic |
| TCGTTCAGCTTGTGATCATG+TGG | 0.604250 | 6.4:+4324872 | None:intergenic |
| GACCGAAAATTGAAAAGCCT+AGG | 0.607774 | 6.4:-4328660 | MS.gene75942:CDS |
| TAAGGAGACACGACCCTCTG+TGG | 0.614957 | 6.4:+4328859 | None:intergenic |
| TAAGGCTGATAGATGTAGAG+AGG | 0.618140 | 6.4:-4328608 | MS.gene75942:CDS |
| TAAAGTGGAGCATCCAGAGA+GGG | 0.619283 | 6.4:-4328929 | MS.gene75942:CDS |
| TTCAGTAAGTATGCGTACAA+GGG | 0.620982 | 6.4:-4329039 | MS.gene75942:CDS |
| TTGTACGCATACTTACTGAA+AGG | 0.621933 | 6.4:+4329042 | None:intergenic |
| TTCATTTCCATGATCCATGG+AGG | 0.624082 | 6.4:-4328501 | MS.gene75942:CDS |
| GAGTCATTGAAAATCTTAGG+AGG | 0.634133 | 6.4:+4328691 | None:intergenic |
| GTAAAGTGGAGCATCCAGAG+AGG | 0.637261 | 6.4:-4328930 | MS.gene75942:CDS |
| TAAAGTGGAGCATCCACAGA+GGG | 0.638542 | 6.4:-4328872 | MS.gene75942:CDS |
| GTTACTGAACTGCACAGTGT+TGG | 0.647308 | 6.4:-4326712 | MS.gene75942:CDS |
| ACGAGAGGACGTGTAGAACG+TGG | 0.649226 | 6.4:+4328547 | None:intergenic |
| TTGTATGCAAGTAAGAAGAG+AGG | 0.658799 | 6.4:-4326833 | MS.gene75942:CDS |
| GGCTTACAAAAGGAAAACAC+CGG | 0.659818 | 6.4:-4328587 | MS.gene75942:CDS |
| GTAAAGTGGAGCATCCACAA+AGG | 0.695425 | 6.4:-4328816 | MS.gene75942:CDS |
| GTAAAGTGGAGCATCCACAG+AGG | 0.713286 | 6.4:-4328873 | MS.gene75942:CDS |
| AGAGGACGTGTAGAACGTGG+AGG | 0.750477 | 6.4:+4328550 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTGATTATAATAATTTGA+GGG | + | chr6.4:4327404-4327423 | None:intergenic | 10.0% |
| !! | TCATGTATTAATAATAATTT+GGG | - | chr6.4:4328164-4328183 | MS.gene75942:intron | 10.0% |
| !!! | CTTTTTTATAAAAATATTTG+AGG | + | chr6.4:4328797-4328816 | None:intergenic | 10.0% |
| !! | AATAAAAGAATATACTAAAG+AGG | - | chr6.4:4326576-4326595 | MS.gene75942:intron | 15.0% |
| !! | CAATTGATTATAATAATTTG+AGG | + | chr6.4:4327405-4327424 | None:intergenic | 15.0% |
| !! | GTCATGTATTAATAATAATT+TGG | - | chr6.4:4328163-4328182 | MS.gene75942:intron | 15.0% |
| !!! | AATTAATAGTATGACTTTTT+TGG | - | chr6.4:4328551-4328570 | MS.gene75942:CDS | 15.0% |
| !!! | TTTTATAAAAAAGTAGACTT+AGG | - | chr6.4:4328804-4328823 | MS.gene75942:CDS | 15.0% |
| !! | AAATCACTAAAAAAAACTAG+AGG | + | chr6.4:4327349-4327368 | None:intergenic | 20.0% |
| !! | AAATCTATATTCTTATCTAG+CGG | - | chr6.4:4327977-4327996 | MS.gene75942:intron | 20.0% |
| !! | AATATGTTAAATTAGGAAAC+GGG | - | chr6.4:4326873-4326892 | MS.gene75942:CDS | 20.0% |
| !! | ATAAAGAAGGATAATGTATT+AGG | - | chr6.4:4326098-4326117 | MS.gene75942:intron | 20.0% |
| !! | ATAATGTTAATGTAGTTACA+AGG | - | chr6.4:4326456-4326475 | MS.gene75942:intron | 20.0% |
| !! | CGAAATTATGATTAAGAATT+TGG | - | chr6.4:4325728-4325747 | MS.gene75942:intron | 20.0% |
| !! | GAATATGTTAAATTAGGAAA+CGG | - | chr6.4:4326872-4326891 | MS.gene75942:CDS | 20.0% |
| !! | GATCAATTGGATTAATAATT+AGG | + | chr6.4:4326488-4326507 | None:intergenic | 20.0% |
| !! | GTTTGAGAATATGTTAAATT+AGG | - | chr6.4:4326866-4326885 | MS.gene75942:CDS | 20.0% |
| !! | TATATGCAATTAACGAAATA+TGG | + | chr6.4:4328859-4328878 | None:intergenic | 20.0% |
| !! | TCGTAATTTAGAAATAAAGA+AGG | - | chr6.4:4326085-4326104 | MS.gene75942:intron | 20.0% |
| !!! | AAAAACTAAACCTTTTCTTA+AGG | - | chr6.4:4325290-4325309 | MS.gene75942:intron | 20.0% |
| !!! | ACAATTAATATTTTACATGC+TGG | + | chr6.4:4326061-4326080 | None:intergenic | 20.0% |
| !!! | AGTCTTTAAAAAAGAGAAAA+AGG | + | chr6.4:4325931-4325950 | None:intergenic | 20.0% |
| !!! | ATAAGAATATAGATTTTCAG+AGG | + | chr6.4:4327973-4327992 | None:intergenic | 20.0% |
| !!! | ATGGAATTTTTTGTAATAAC+TGG | - | chr6.4:4326265-4326284 | MS.gene75942:intron | 20.0% |
| !!! | ATTTGAAATTTATCTTCTTG+AGG | - | chr6.4:4325696-4325715 | MS.gene75942:intron | 20.0% |
| !!! | TAAAAACAAAAAACCCTTTT+TGG | - | chr6.4:4327506-4327525 | MS.gene75942:intron | 20.0% |
| !!! | TAAGAATATAGATTTTCAGA+GGG | + | chr6.4:4327972-4327991 | None:intergenic | 20.0% |
| !!! | TCACTTTTAAAGTTACTTTT+AGG | - | chr6.4:4327270-4327289 | MS.gene75942:intron | 20.0% |
| !!! | TTCTTTACATTGATTGATAT+CGG | - | chr6.4:4328949-4328968 | MS.gene75942:CDS | 20.0% |
| !!! | TTTTATGCTATGTGTAATTT+TGG | - | chr6.4:4327321-4327340 | MS.gene75942:intron | 20.0% |
| ! | AAAAGAATATACTAAAGAGG+AGG | - | chr6.4:4326579-4326598 | MS.gene75942:intron | 25.0% |
| ! | AAACATCAGCATAAAATACA+AGG | + | chr6.4:4325518-4325537 | None:intergenic | 25.0% |
| ! | AACATCAGCATAAAATACAA+GGG | + | chr6.4:4325517-4325536 | None:intergenic | 25.0% |
| ! | AAGAGATGAAAAACTATGAA+TGG | + | chr6.4:4327376-4327395 | None:intergenic | 25.0% |
| ! | AAGTTATACAATTTCTGTTG+AGG | - | chr6.4:4326606-4326625 | MS.gene75942:intron | 25.0% |
| ! | ACATAGCATAAAATACTAGA+GGG | + | chr6.4:4327314-4327333 | None:intergenic | 25.0% |
| ! | ATAAAACAGATAGCATTACT+CGG | + | chr6.4:4328591-4328610 | None:intergenic | 25.0% |
| ! | ATAAGAAGCTAACTCAAAAT+AGG | + | chr6.4:4326999-4327018 | None:intergenic | 25.0% |
| ! | ATAATCAAAATGAGTGAATC+TGG | - | chr6.4:4328196-4328215 | MS.gene75942:intron | 25.0% |
| ! | CTTGATCTTCCAAAAATAAA+GGG | + | chr6.4:4327811-4327830 | None:intergenic | 25.0% |
| ! | GTGTCAATATCTAACATTAT+TGG | - | chr6.4:4326320-4326339 | MS.gene75942:intron | 25.0% |
| ! | TACAGTATCATAATAAAGTC+AGG | + | chr6.4:4325551-4325570 | None:intergenic | 25.0% |
| ! | TAGCAACGAAAATTGTAATT+AGG | - | chr6.4:4328889-4328908 | MS.gene75942:CDS | 25.0% |
| ! | TCTTGATCTTCCAAAAATAA+AGG | + | chr6.4:4327812-4327831 | None:intergenic | 25.0% |
| ! | TGAATTCAAAATGACTCAAA+AGG | + | chr6.4:4325878-4325897 | None:intergenic | 25.0% |
| !! | ATATCTTTTAATCAGGTATG+CGG | - | chr6.4:4328974-4328993 | MS.gene75942:CDS | 25.0% |
| !! | ATCGGTTATATCTTTTAATC+AGG | - | chr6.4:4328967-4328986 | MS.gene75942:CDS | 25.0% |
| !! | ATTATTGAGTGTTGTGTTAT+TGG | - | chr6.4:4328110-4328129 | MS.gene75942:intron | 25.0% |
| !! | TCTAAACTGTTAATCGTTTT+CGG | - | chr6.4:4325652-4325671 | MS.gene75942:intron | 25.0% |
| !! | TCTTCAACTTTCTGAAAATA+AGG | + | chr6.4:4325021-4325040 | None:intergenic | 25.0% |
| !! | TTGAAGATTTAGAACAGTTT+AGG | - | chr6.4:4325148-4325167 | MS.gene75942:intron | 25.0% |
| !! | TTTTCTACAGAACTACAAAA+AGG | + | chr6.4:4326034-4326053 | None:intergenic | 25.0% |
| !!! | ATGTACCATTTGCAATTTTT+TGG | - | chr6.4:4326745-4326764 | MS.gene75942:CDS | 25.0% |
| !!! | TTCTATTATAAGCTTGTTGA+TGG | - | chr6.4:4326695-4326714 | MS.gene75942:intron | 25.0% |
| AAAAGAAATGCTATGTGCAA+GGG | - | chr6.4:4327917-4327936 | MS.gene75942:intron | 30.0% | |
| AAATATTTGAGGATCGATGA+TGG | + | chr6.4:4328786-4328805 | None:intergenic | 30.0% | |
| AAATCCAAAACTGAACTGTT+CGG | + | chr6.4:4326227-4326246 | None:intergenic | 30.0% | |
| AAGCTTATAATAGAAGCAAC+AGG | + | chr6.4:4326690-4326709 | None:intergenic | 30.0% | |
| AGGAAATAGAAGAGGTAATA+AGG | - | chr6.4:4327103-4327122 | MS.gene75942:intron | 30.0% | |
| ATATGGAATGCAGAATTACA+TGG | - | chr6.4:4327842-4327861 | MS.gene75942:intron | 30.0% | |
| ATCAAGATGACATAGTGATA+TGG | - | chr6.4:4327825-4327844 | MS.gene75942:intron | 30.0% | |
| CACATAGCATAAAATACTAG+AGG | + | chr6.4:4327315-4327334 | None:intergenic | 30.0% | |
| GAAAACACCGGATAATAATT+GGG | - | chr6.4:4325341-4325360 | MS.gene75942:intron | 30.0% | |
| GATTTGAGTAATGTCAAATG+AGG | - | chr6.4:4326833-4326852 | MS.gene75942:CDS | 30.0% | |
| TAAAACTCAACTGATGCAAA+CGG | + | chr6.4:4325814-4325833 | None:intergenic | 30.0% | |
| TAATGGCAGCATAGTATTAA+TGG | - | chr6.4:4326189-4326208 | MS.gene75942:intron | 30.0% | |
| TCACTCCAAAAAATTGCAAA+TGG | + | chr6.4:4326753-4326772 | None:intergenic | 30.0% | |
| TTACATGGTAAATACACAGT+AGG | - | chr6.4:4327857-4327876 | MS.gene75942:intron | 30.0% | |
| TTTGGTTGCTAGAATATTGA+AGG | - | chr6.4:4327713-4327732 | MS.gene75942:intron | 30.0% | |
| ! | AAACAAAAAACCCTTTTTGG+CGG | - | chr6.4:4327509-4327528 | MS.gene75942:intron | 30.0% |
| ! | AGAAGATGCTTAATGCTTTT+TGG | - | chr6.4:4327532-4327551 | MS.gene75942:intron | 30.0% |
| ! | GCATATGCTATATTTTGTAC+AGG | - | chr6.4:4329002-4329021 | MS.gene75942:CDS | 30.0% |
| ! | GTTTTTCTTTCTGATTTCCT+AGG | + | chr6.4:4325276-4325295 | None:intergenic | 30.0% |
| ! | TATATTTTGTACAGGCAAGT+GGG | - | chr6.4:4329010-4329029 | MS.gene75942:CDS | 30.0% |
| ! | TGATGATGAGTTATAAATGC+TGG | - | chr6.4:4328424-4328443 | MS.gene75942:intron | 30.0% |
| ! | TTATGCTGATGTTTTACTGT+CGG | - | chr6.4:4325524-4325543 | MS.gene75942:intron | 30.0% |
| ! | TTCCTAGGCTTTTCAATTTT+CGG | + | chr6.4:4325261-4325280 | None:intergenic | 30.0% |
| ! | TTTTCAAAACAGTTCCGTTT+TGG | - | chr6.4:4326163-4326182 | MS.gene75942:intron | 30.0% |
| !! | ACTACTATTGTTTGTTGTTC+TGG | - | chr6.4:4325626-4325645 | MS.gene75942:intron | 30.0% |
| !! | AGTTTGTTAAGGTTCTTACA+GGG | - | chr6.4:4328448-4328467 | MS.gene75942:intron | 30.0% |
| !! | ATATTCTTATCTAGCGGATT+TGG | - | chr6.4:4327983-4328002 | MS.gene75942:intron | 30.0% |
| !! | GTTTCTGATTTGCTTTACAA+TGG | - | chr6.4:4325600-4325619 | MS.gene75942:intron | 30.0% |
| !!! | CACATCTATCCCTTTATTTT+TGG | - | chr6.4:4327799-4327818 | MS.gene75942:intron | 30.0% |
| !!! | CTTCTTATTTTGCAAAATGC+AGG | - | chr6.4:4327011-4327030 | MS.gene75942:intron | 30.0% |
| !!! | GGAACTGTTTTGAAAATGTT+GGG | + | chr6.4:4326159-4326178 | None:intergenic | 30.0% |
| AAAGAAATGCTATGTGCAAG+GGG | - | chr6.4:4327918-4327937 | MS.gene75942:intron | 35.0% | |
| AAGAAGAGAGGAAATAGAAG+AGG | - | chr6.4:4327095-4327114 | MS.gene75942:intron | 35.0% | |
| ACATGTATAATCAGCTTGCA+AGG | + | chr6.4:4328370-4328389 | None:intergenic | 35.0% | |
| AGTTTCATTTCCATGATCCA+TGG | - | chr6.4:4325412-4325431 | MS.gene75942:intron | 35.0% | |
| ATCACAAGCTGAACGAATAT+TGG | - | chr6.4:4329051-4329070 | MS.gene75942:CDS | 35.0% | |
| ATGGATATGTGTGGTAGTTA+TGG | + | chr6.4:4326530-4326549 | None:intergenic | 35.0% | |
| ATGGTAAATACACAGTAGGT+CGG | - | chr6.4:4327861-4327880 | MS.gene75942:intron | 35.0% | |
| ATGTGATAGCTTCAGACATA+GGG | + | chr6.4:4327784-4327803 | None:intergenic | 35.0% | |
| ATTCGAGTGTGATCATGTAT+AGG | + | chr6.4:4326559-4326578 | None:intergenic | 35.0% | |
| CATCTATCAGCCTTAAGAAA+AGG | + | chr6.4:4325303-4325322 | None:intergenic | 35.0% | |
| CATGGAAATGAAACTCTTGA+AGG | + | chr6.4:4325407-4325426 | None:intergenic | 35.0% | |
| CATTAGGTCTTCAAGTGAAA+AGG | - | chr6.4:4327127-4327146 | MS.gene75942:intron | 35.0% | |
| CGAGAGTCATTGAAAATCTT+AGG | + | chr6.4:4325231-4325250 | None:intergenic | 35.0% | |
| CTAGAATATTGAAGGCTAGA+TGG | - | chr6.4:4327721-4327740 | MS.gene75942:intron | 35.0% | |
| GAAAAGAAATGCTATGTGCA+AGG | - | chr6.4:4327916-4327935 | MS.gene75942:intron | 35.0% | |
| GAAGAGGTAATAAGGACATT+AGG | - | chr6.4:4327111-4327130 | MS.gene75942:intron | 35.0% | |
| GAATTTCCTTCGCAAAAGAA+AGG | - | chr6.4:4329073-4329092 | MS.gene75942:CDS | 35.0% | |
| GAGTCATTGAAAATCTTAGG+AGG | + | chr6.4:4325228-4325247 | None:intergenic | 35.0% | |
| GATCATGTATAGGACAGTTA+TGG | + | chr6.4:4326549-4326568 | None:intergenic | 35.0% | |
| GGAAAACACCGGATAATAAT+TGG | - | chr6.4:4325340-4325359 | MS.gene75942:intron | 35.0% | |
| GTAATCAGAGCAAAGGAATT+CGG | - | chr6.4:4327565-4327584 | MS.gene75942:intron | 35.0% | |
| GTGAATACTTAACTGAGACT+TGG | - | chr6.4:4327175-4327194 | MS.gene75942:intron | 35.0% | |
| TAATAGAAGCAACAGGAAGA+TGG | + | chr6.4:4326683-4326702 | None:intergenic | 35.0% | |
| TAGTGGCAGCTTACAATTAA+TGG | - | chr6.4:4326246-4326265 | MS.gene75942:intron | 35.0% | |
| TGATGACTACATGTTGAAAG+AGG | - | chr6.4:4325782-4325801 | MS.gene75942:intron | 35.0% | |
| TGCTGCCATTATATCCAAAA+CGG | + | chr6.4:4326180-4326199 | None:intergenic | 35.0% | |
| TGGATATGTGTGGTAGTTAT+GGG | + | chr6.4:4326529-4326548 | None:intergenic | 35.0% | |
| TGTTACAGTATGTCAAACAG+AGG | - | chr6.4:4326379-4326398 | MS.gene75942:intron | 35.0% | |
| TTCAGTAAGTATGCGTACAA+GGG | - | chr6.4:4324877-4324896 | MS.gene75942:CDS | 35.0% | |
| TTGAGTAATGTCAAATGAGG+TGG | - | chr6.4:4326836-4326855 | MS.gene75942:CDS | 35.0% | |
| TTGTACGCATACTTACTGAA+AGG | + | chr6.4:4324877-4324896 | None:intergenic | 35.0% | |
| TTGTATGCAAGTAAGAAGAG+AGG | - | chr6.4:4327083-4327102 | MS.gene75942:intron | 35.0% | |
| TTTCAGTAAGTATGCGTACA+AGG | - | chr6.4:4324876-4324895 | MS.gene75942:CDS | 35.0% | |
| ! | ATAGATTTTCAGAGGGACAT+GGG | + | chr6.4:4327965-4327984 | None:intergenic | 35.0% |
| ! | ATGTATCCTTTCTTTTGCGA+AGG | + | chr6.4:4329082-4329101 | None:intergenic | 35.0% |
| ! | CTATATTTTGTACAGGCAAG+TGG | - | chr6.4:4329009-4329028 | MS.gene75942:CDS | 35.0% |
| ! | GAAAGTTGAAGAGTGTAAAG+TGG | - | chr6.4:4325029-4325048 | MS.gene75942:intron | 35.0% |
| ! | TATAGATTTTCAGAGGGACA+TGG | + | chr6.4:4327966-4327985 | None:intergenic | 35.0% |
| ! | TATTCCGAACAGTTCAGTTT+TGG | - | chr6.4:4326220-4326239 | MS.gene75942:intron | 35.0% |
| ! | TTGAGGTTAAGTTTGTTCAG+AGG | - | chr6.4:4328682-4328701 | MS.gene75942:CDS | 35.0% |
| !! | AGATGCTTAATGCTTTTTGG+TGG | - | chr6.4:4327535-4327554 | MS.gene75942:intron | 35.0% |
| !! | ATGCTTAATGCTTTTTGGTG+GGG | - | chr6.4:4327537-4327556 | MS.gene75942:intron | 35.0% |
| !! | CAGTTCCGTTTTGGATATAA+TGG | - | chr6.4:4326172-4326191 | MS.gene75942:intron | 35.0% |
| !! | CAGTTTGTTAAGGTTCTTAC+AGG | - | chr6.4:4328447-4328466 | MS.gene75942:intron | 35.0% |
| !! | GATGCTTAATGCTTTTTGGT+GGG | - | chr6.4:4327536-4327555 | MS.gene75942:intron | 35.0% |
| !! | TAAATGCTGGCAGTTTGTTA+AGG | - | chr6.4:4328437-4328456 | MS.gene75942:intron | 35.0% |
| !! | TATCTTGACTTGTGACTTTG+AGG | - | chr6.4:4328665-4328684 | MS.gene75942:CDS | 35.0% |
| !! | TCTTAGAAAGAGTGTTGTTG+AGG | - | chr6.4:4324906-4324925 | MS.gene75942:CDS | 35.0% |
| !! | TTGGCTTTTTCCGTAATGAA+GGG | - | chr6.4:4328400-4328419 | MS.gene75942:intron | 35.0% |
| !!! | CAGTTCAGTTTTGGATTTAG+TGG | - | chr6.4:4326229-4326248 | MS.gene75942:intron | 35.0% |
| !!! | CGGAACTGTTTTGAAAATGT+TGG | + | chr6.4:4326160-4326179 | None:intergenic | 35.0% |
| AAAGAAGAACAGTAGCACAG+TGG | - | chr6.4:4325902-4325921 | MS.gene75942:intron | 40.0% | |
| AACATATCAGTCTCACCTTC+TGG | + | chr6.4:4328498-4328517 | None:intergenic | 40.0% | |
| AATGCTTACCGATGGGATAA+AGG | - | chr6.4:4328010-4328029 | MS.gene75942:intron | 40.0% | |
| ACAATCACCTCTTATTCTGC+AGG | + | chr6.4:4328067-4328086 | None:intergenic | 40.0% | |
| ACTGTGCAGTTCAGTAACAT+AGG | + | chr6.4:4327202-4327221 | None:intergenic | 40.0% | |
| AGGACAGTTATGGATATGTG+TGG | + | chr6.4:4326539-4326558 | None:intergenic | 40.0% | |
| ATCTATCCCTCTCTTAGCTT+TGG | + | chr6.4:4327619-4327638 | None:intergenic | 40.0% | |
| CGTACGCAAACTCATTGTAA+TGG | + | chr6.4:4324846-4324865 | None:intergenic | 40.0% | |
| GACCGAAAATTGAAAAGCCT+AGG | - | chr6.4:4325256-4325275 | MS.gene75942:intron | 40.0% | |
| GATGTAGAGAGGCTTACAAA+AGG | - | chr6.4:4325319-4325338 | MS.gene75942:intron | 40.0% | |
| GATGTGATAGCTTCAGACAT+AGG | + | chr6.4:4327785-4327804 | None:intergenic | 40.0% | |
| GCAAGCTGATTATACATGTG+CGG | - | chr6.4:4328371-4328390 | MS.gene75942:intron | 40.0% | |
| GGCTTACAAAAGGAAAACAC+CGG | - | chr6.4:4325329-4325348 | MS.gene75942:intron | 40.0% | |
| GGTGAATAGGGGATGTATAA+AGG | - | chr6.4:4327742-4327761 | MS.gene75942:intron | 40.0% | |
| GTGGAATATGCTATGCAAGT+CGG | - | chr6.4:4327686-4327705 | MS.gene75942:intron | 40.0% | |
| TAAGGCTGATAGATGTAGAG+AGG | - | chr6.4:4325308-4325327 | MS.gene75942:intron | 40.0% | |
| TAGCCATGTTAACCAAGCAA+GGG | - | chr6.4:4327664-4327683 | MS.gene75942:intron | 40.0% | |
| TAGGGGATGTATAAAGGTGA+AGG | - | chr6.4:4327748-4327767 | MS.gene75942:intron | 40.0% | |
| TATACATGTGCGGTTGATCT+TGG | - | chr6.4:4328381-4328400 | MS.gene75942:intron | 40.0% | |
| TCATCATCAGCCCTTCATTA+CGG | + | chr6.4:4328413-4328432 | None:intergenic | 40.0% | |
| TCATTTCCATGATCCATGGA+GGG | - | chr6.4:4325416-4325435 | MS.gene75942:intron | 40.0% | |
| TGAAGGCTAGATGGTGAATA+GGG | - | chr6.4:4327730-4327749 | MS.gene75942:intron | 40.0% | |
| TGGAGAAAATGCTTACCGAT+GGG | - | chr6.4:4328003-4328022 | MS.gene75942:intron | 40.0% | |
| TGGTAAATACACAGTAGGTC+GGG | - | chr6.4:4327862-4327881 | MS.gene75942:intron | 40.0% | |
| TGTCAAATGAGGTGGATACA+TGG | - | chr6.4:4326844-4326863 | MS.gene75942:CDS | 40.0% | |
| TGTGAAACACAACTGATGGT+AGG | - | chr6.4:4328832-4328851 | MS.gene75942:CDS | 40.0% | |
| TTAGCCATGTTAACCAAGCA+AGG | - | chr6.4:4327663-4327682 | MS.gene75942:intron | 40.0% | |
| TTCATTTCCATGATCCATGG+AGG | - | chr6.4:4325415-4325434 | MS.gene75942:intron | 40.0% | |
| TTGAAGGCTAGATGGTGAAT+AGG | - | chr6.4:4327729-4327748 | MS.gene75942:intron | 40.0% | |
| TTGGAGAAAATGCTTACCGA+TGG | - | chr6.4:4328002-4328021 | MS.gene75942:intron | 40.0% | |
| TTGTTAAGGTTCTTACAGGG+TGG | - | chr6.4:4328451-4328470 | MS.gene75942:intron | 40.0% | |
| ! | GAAAGTCGAAGAGTGTAAAG+TGG | - | chr6.4:4324972-4324991 | MS.gene75942:intron | 40.0% |
| ! | GCTATGCAAGTCGGATATTT+TGG | - | chr6.4:4327695-4327714 | MS.gene75942:intron | 40.0% |
| ! | TAAAGTGGAGCATCCACAAA+GGG | - | chr6.4:4325101-4325120 | MS.gene75942:intron | 40.0% |
| ! | TCTATCCCTCTCTTAGCTTT+GGG | + | chr6.4:4327618-4327637 | None:intergenic | 40.0% |
| ! | TCTGTGCTGATATAGAGACT+AGG | - | chr6.4:4328610-4328629 | MS.gene75942:CDS | 40.0% |
| ! | TCTGTTGAGGTATGCTTTTG+CGG | - | chr6.4:4326619-4326638 | MS.gene75942:intron | 40.0% |
| ! | TCTTTTAATCAGGTATGCGG+CGG | - | chr6.4:4328977-4328996 | MS.gene75942:CDS | 40.0% |
| ! | TGAAAATGTTGGGCACTGTT+TGG | + | chr6.4:4326149-4326168 | None:intergenic | 40.0% |
| !! | CTTGGCTTTTTCCGTAATGA+AGG | - | chr6.4:4328399-4328418 | MS.gene75942:intron | 40.0% |
| !! | TAGAAAGAGTGTTGTTGAGG+TGG | - | chr6.4:4324909-4324928 | MS.gene75942:CDS | 40.0% |
| AAAGATCTGTGACTGTCCAG+AGG | + | chr6.4:4328315-4328334 | None:intergenic | 45.0% | |
| AAGCATCTTCTCCGCCAAAA+AGG | + | chr6.4:4327523-4327542 | None:intergenic | 45.0% | |
| AGCATCTTCTCCGCCAAAAA+GGG | + | chr6.4:4327522-4327541 | None:intergenic | 45.0% | |
| ATACCTCCGGTTCAGATTGT+AGG | - | chr6.4:4328231-4328250 | MS.gene75942:intron | 45.0% | |
| ATACTCTTGAACCGCACTCA+AGG | - | chr6.4:4325453-4325472 | MS.gene75942:intron | 45.0% | |
| ATCACCTCTTATTCTGCAGG+CGG | + | chr6.4:4328064-4328083 | None:intergenic | 45.0% | |
| ATCAGAGCAAAGGAATTCGG+TGG | - | chr6.4:4327568-4327587 | MS.gene75942:intron | 45.0% | |
| CATATAGCAATCACCCTCCA+TGG | + | chr6.4:4325432-4325451 | None:intergenic | 45.0% | |
| CATGTCCCAAAGCTAAGAGA+GGG | - | chr6.4:4327610-4327629 | MS.gene75942:intron | 45.0% | |
| CTGCTCTGCAATACTCTGTT+TGG | - | chr6.4:4325969-4325988 | MS.gene75942:intron | 45.0% | |
| CTGGACAGTCACAGATCTTT+AGG | - | chr6.4:4328315-4328334 | MS.gene75942:intron | 45.0% | |
| CTGGCACACTGAATTCAAGT+TGG | + | chr6.4:4328479-4328498 | None:intergenic | 45.0% | |
| CTTGAATTCAGTGTGCCAGA+AGG | - | chr6.4:4328480-4328499 | MS.gene75942:CDS | 45.0% | |
| GAACCTCAAACACATACCTC+CGG | - | chr6.4:4328218-4328237 | MS.gene75942:intron | 45.0% | |
| GAAGGCTAGATGGTGAATAG+GGG | - | chr6.4:4327731-4327750 | MS.gene75942:intron | 45.0% | |
| GAGCAGTACAATTGCATGCA+GGG | - | chr6.4:4328283-4328302 | MS.gene75942:intron | 45.0% | |
| GTGTGGTAGTTATGGGACAA+GGG | + | chr6.4:4326522-4326541 | None:intergenic | 45.0% | |
| GTTACTGAACTGCACAGTGT+TGG | - | chr6.4:4327204-4327223 | MS.gene75942:intron | 45.0% | |
| TAGCATATTCCACCCTTGCT+TGG | + | chr6.4:4327679-4327698 | None:intergenic | 45.0% | |
| TCAACGACACGCAAGATGTT+GGG | + | chr6.4:4326910-4326929 | None:intergenic | 45.0% | |
| TCATGTCCCAAAGCTAAGAG+AGG | - | chr6.4:4327609-4327628 | MS.gene75942:intron | 45.0% | |
| TCCTGCAACCTTTATCCCAT+CGG | + | chr6.4:4328021-4328040 | None:intergenic | 45.0% | |
| TCGTTCAGCTTGTGATCATG+TGG | + | chr6.4:4329047-4329066 | None:intergenic | 45.0% | |
| TGCATACAAGTTTCTGCGTC+TGG | + | chr6.4:4327072-4327091 | None:intergenic | 45.0% | |
| TGGGATAAAGGTTGCAGGAA+CGG | - | chr6.4:4328022-4328041 | MS.gene75942:intron | 45.0% | |
| TGTGTGGTAGTTATGGGACA+AGG | + | chr6.4:4326523-4326542 | None:intergenic | 45.0% | |
| ! | GTAAAGTGGAGCATCCACAA+AGG | - | chr6.4:4325100-4325119 | MS.gene75942:intron | 45.0% |
| ! | GTACCTGTTTTCCTTGAGTG+CGG | + | chr6.4:4325467-4325486 | None:intergenic | 45.0% |
| ! | TAAAGTGGAGCATCCACAGA+GGG | - | chr6.4:4325044-4325063 | MS.gene75942:intron | 45.0% |
| ! | TAAAGTGGAGCATCCAGAGA+GGG | - | chr6.4:4324987-4325006 | MS.gene75942:intron | 45.0% |
| !! | AGGAGACGCTTTTTAACGAG+AGG | + | chr6.4:4325387-4325406 | None:intergenic | 45.0% |
| !! | CTTAATGCTTTTTGGTGGGG+AGG | - | chr6.4:4327540-4327559 | MS.gene75942:intron | 45.0% |
| !! | GGAGGCACCCAATTATTATC+CGG | + | chr6.4:4325351-4325370 | None:intergenic | 45.0% |
| AATGCTATGTGCAAGGGGAG+TGG | - | chr6.4:4327923-4327942 | MS.gene75942:intron | 50.0% | |
| ACCGATGGGATAAAGGTTGC+AGG | - | chr6.4:4328017-4328036 | MS.gene75942:intron | 50.0% | |
| CAAACCGCCTGCAGAATAAG+AGG | - | chr6.4:4328057-4328076 | MS.gene75942:intron | 50.0% | |
| CAATCACCCTCCATGGATCA+TGG | + | chr6.4:4325425-4325444 | None:intergenic | 50.0% | |
| CACAGGCTGTGTTTGCAGAA+TGG | - | chr6.4:4328259-4328278 | MS.gene75942:intron | 50.0% | |
| CCACCCTTGCTTGGTTAACA+TGG | + | chr6.4:4327670-4327689 | None:intergenic | 50.0% | |
| CCATGTTAACCAAGCAAGGG+TGG | - | chr6.4:4327667-4327686 | MS.gene75942:intron | 50.0% | |
| CGAGCAGTACAATTGCATGC+AGG | - | chr6.4:4328282-4328301 | MS.gene75942:intron | 50.0% | |
| CTCTTATTCTGCAGGCGGTT+TGG | + | chr6.4:4328059-4328078 | None:intergenic | 50.0% | |
| GAACCGCACTCAAGGAAAAC+AGG | - | chr6.4:4325461-4325480 | MS.gene75942:intron | 50.0% | |
| GAAGAACAGTAGCACAGTGG+CGG | - | chr6.4:4325905-4325924 | MS.gene75942:intron | 50.0% | |
| GGAGGAGGTAATCAGAGCAA+AGG | - | chr6.4:4327558-4327577 | MS.gene75942:intron | 50.0% | |
| GGAGGGAGGATTCGATCAAT+TGG | + | chr6.4:4326501-4326520 | None:intergenic | 50.0% | |
| GGATTCTTGTCGTGCTAGGA+AGG | - | chr6.4:4324930-4324949 | MS.gene75942:CDS | 50.0% | |
| GGTAGTTATGGGACAAGGGA+GGG | + | chr6.4:4326518-4326537 | None:intergenic | 50.0% | |
| GTCAACGACACGCAAGATGT+TGG | + | chr6.4:4326911-4326930 | None:intergenic | 50.0% | |
| GTTGCTGAAAGCTGTCTGCT+GGG | - | chr6.4:4328515-4328534 | MS.gene75942:CDS | 50.0% | |
| TGGTAGTTATGGGACAAGGG+AGG | + | chr6.4:4326519-4326538 | None:intergenic | 50.0% | |
| TGTTCAGAGGCAAGCGAACA+TGG | - | chr6.4:4328695-4328714 | MS.gene75942:CDS | 50.0% | |
| TGTTGCTGAAAGCTGTCTGC+TGG | - | chr6.4:4328514-4328533 | MS.gene75942:CDS | 50.0% | |
| ! | AAGGAATTCGGTGGTTGGCT+TGG | - | chr6.4:4327577-4327596 | MS.gene75942:intron | 50.0% |
| ! | AGGTGGATTCTTGTCGTGCT+AGG | - | chr6.4:4324926-4324945 | MS.gene75942:CDS | 50.0% |
| ! | GAACCGGAGGTATGTGTTTG+AGG | + | chr6.4:4328224-4328243 | None:intergenic | 50.0% |
| ! | GAGCAAAGGAATTCGGTGGT+TGG | - | chr6.4:4327572-4327591 | MS.gene75942:intron | 50.0% |
| ! | GTAAAGTGGAGCATCCACAG+AGG | - | chr6.4:4325043-4325062 | MS.gene75942:intron | 50.0% |
| ! | GTAAAGTGGAGCATCCAGAG+AGG | - | chr6.4:4324986-4325005 | MS.gene75942:intron | 50.0% |
| !! | AATGCTTTTTGGTGGGGAGG+AGG | - | chr6.4:4327543-4327562 | MS.gene75942:intron | 50.0% |
| !! | AGGAATTCGGTGGTTGGCTT+GGG | - | chr6.4:4327578-4327597 | MS.gene75942:intron | 50.0% |
| ACGAGAGGACGTGTAGAACG+TGG | + | chr6.4:4325372-4325391 | None:intergenic | 55.0% | |
| AGAGGACGTGTAGAACGTGG+AGG | + | chr6.4:4325369-4325388 | None:intergenic | 55.0% | |
| AGTTATGGGACAAGGGAGGG+AGG | + | chr6.4:4326515-4326534 | None:intergenic | 55.0% | |
| GAACGAGACACGACCCTTTG+TGG | + | chr6.4:4325117-4325136 | None:intergenic | 55.0% | |
| GCATGCAGGGATTTCACCTC+TGG | - | chr6.4:4328296-4328315 | MS.gene75942:intron | 55.0% | |
| GGATGTGTGTGCGTGTGAAG+AGG | - | chr6.4:4328131-4328150 | MS.gene75942:intron | 55.0% | |
| GTCGCGCCTACAATCTGAAC+CGG | + | chr6.4:4328240-4328259 | None:intergenic | 55.0% | |
| GTCTGCTGGGTGCAAGAACT+GGG | - | chr6.4:4328528-4328547 | MS.gene75942:CDS | 55.0% | |
| TAAGGAGACACGACCCTCTC+TGG | + | chr6.4:4325003-4325022 | None:intergenic | 55.0% | |
| TAAGGAGACACGACCCTCTG+TGG | + | chr6.4:4325060-4325079 | None:intergenic | 55.0% | |
| TCAGATTGTAGGCGCGACAC+AGG | - | chr6.4:4328242-4328261 | MS.gene75942:intron | 55.0% | |
| TGTCTGCTGGGTGCAAGAAC+TGG | - | chr6.4:4328527-4328546 | MS.gene75942:CDS | 55.0% | |
| ! | TCTGCAGGCGGTTTGGACAA+GGG | + | chr6.4:4328052-4328071 | None:intergenic | 55.0% |
| ! | TTCTGCAGGCGGTTTGGACA+AGG | + | chr6.4:4328053-4328072 | None:intergenic | 55.0% |
| GCGCCTACAATCTGAACCGG+AGG | + | chr6.4:4328237-4328256 | None:intergenic | 60.0% | |
| GCTATGTGCAAGGGGAGTGG+CGG | - | chr6.4:4327926-4327945 | MS.gene75942:intron | 60.0% | |
| ATGTGCAAGGGGAGTGGCGG+AGG | - | chr6.4:4327929-4327948 | MS.gene75942:intron | 65.0% | |
| ! | AAGGGGAGTGGCGGAGGTTG+TGG | - | chr6.4:4327935-4327954 | MS.gene75942:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.4 | gene | 4324832 | 4329106 | 4324832 | ID=MS.gene75942 |
| chr6.4 | mRNA | 4324832 | 4329106 | 4324832 | ID=MS.gene75942.t1;Parent=MS.gene75942 |
| chr6.4 | exon | 4328456 | 4329106 | 4328456 | ID=MS.gene75942.t1.exon1;Parent=MS.gene75942.t1 |
| chr6.4 | CDS | 4328456 | 4329106 | 4328456 | ID=cds.MS.gene75942.t1;Parent=MS.gene75942.t1 |
| chr6.4 | exon | 4326709 | 4326905 | 4326709 | ID=MS.gene75942.t1.exon2;Parent=MS.gene75942.t1 |
| chr6.4 | CDS | 4326709 | 4326905 | 4326709 | ID=cds.MS.gene75942.t1;Parent=MS.gene75942.t1 |
| chr6.4 | exon | 4324832 | 4324949 | 4324832 | ID=MS.gene75942.t1.exon3;Parent=MS.gene75942.t1 |
| chr6.4 | CDS | 4324832 | 4324949 | 4324832 | ID=cds.MS.gene75942.t1;Parent=MS.gene75942.t1 |
| Gene Sequence |
| Protein sequence |
