Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene056638.t1 | XP_024637186.1 | 85.9 | 269 | 31 | 3 | 6 | 268 | 64 | 331 | 2.70E-124 | 454.9 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene056638.t1 | Q8RY18 | 31.2 | 240 | 122 | 5 | 67 | 265 | 175 | 412 | 1.2e-19 | 98.6 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene056638.t1 | A0A396I6R9 | 85.9 | 269 | 31 | 3 | 6 | 268 | 64 | 331 | 1.9e-124 | 454.9 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049786 | MS.gene056638 | 0.828108 | 1.08E-54 | -1.69E-46 |
MS.gene050114 | MS.gene056638 | 0.814829 | 1.26E-51 | -1.69E-46 |
MS.gene052434 | MS.gene056638 | 0.832246 | 1.05E-55 | -1.69E-46 |
MS.gene052746 | MS.gene056638 | 0.80164 | 8.19E-49 | -1.69E-46 |
MS.gene054222 | MS.gene056638 | 0.813592 | 2.37E-51 | -1.69E-46 |
MS.gene054576 | MS.gene056638 | 0.816219 | 6.19E-52 | -1.69E-46 |
MS.gene055603 | MS.gene056638 | 0.833684 | 4.63E-56 | -1.69E-46 |
MS.gene056403 | MS.gene056638 | 0.81146 | 6.93E-51 | -1.69E-46 |
MS.gene056605 | MS.gene056638 | 0.807533 | 4.83E-50 | -1.69E-46 |
MS.gene056638 | MS.gene056986 | 0.825066 | 5.74E-54 | -1.69E-46 |
MS.gene056638 | MS.gene057360 | 0.820493 | 6.66E-53 | -1.69E-46 |
MS.gene056638 | MS.gene059170 | 0.802746 | 4.85E-49 | -1.69E-46 |
MS.gene056638 | MS.gene06010 | 0.812157 | 4.88E-51 | -1.69E-46 |
MS.gene056638 | MS.gene06011 | 0.810166 | 1.32E-50 | -1.69E-46 |
MS.gene056638 | MS.gene06131 | 0.814375 | 1.59E-51 | -1.69E-46 |
MS.gene056638 | MS.gene062292 | 0.847713 | 9.72E-60 | -1.69E-46 |
MS.gene056638 | MS.gene063247 | 0.80849 | 3.02E-50 | -1.69E-46 |
MS.gene056638 | MS.gene065159 | 0.828338 | 9.50E-55 | -1.69E-46 |
MS.gene056638 | MS.gene065504 | 0.852485 | 4.48E-61 | -1.69E-46 |
MS.gene056638 | MS.gene065949 | 0.821431 | 4.05E-53 | -1.69E-46 |
MS.gene056638 | MS.gene067583 | 0.839738 | 1.32E-57 | -1.69E-46 |
MS.gene056638 | MS.gene069024 | 0.804903 | 1.73E-49 | -1.69E-46 |
MS.gene056638 | MS.gene07038 | 0.809771 | 1.60E-50 | -1.69E-46 |
MS.gene056638 | MS.gene07088 | 0.848541 | 5.74E-60 | -1.69E-46 |
MS.gene056638 | MS.gene071985 | 0.809247 | 2.08E-50 | -1.69E-46 |
MS.gene056638 | MS.gene072455 | 0.808511 | 2.99E-50 | -1.69E-46 |
MS.gene056638 | MS.gene074100 | 0.807352 | 5.27E-50 | -1.69E-46 |
MS.gene056638 | MS.gene074369 | 0.814828 | 1.26E-51 | -1.69E-46 |
MS.gene056638 | MS.gene07608 | 0.813819 | 2.11E-51 | -1.69E-46 |
MS.gene056638 | MS.gene09111 | 0.803203 | 3.90E-49 | -1.69E-46 |
MS.gene056638 | MS.gene09166 | 0.840913 | 6.53E-58 | -1.69E-46 |
MS.gene056638 | MS.gene20392 | 0.813609 | 2.35E-51 | -1.69E-46 |
MS.gene056638 | MS.gene20621 | 0.812936 | 3.30E-51 | -1.69E-46 |
MS.gene056638 | MS.gene23491 | 0.815875 | 7.39E-52 | -1.69E-46 |
MS.gene056638 | MS.gene25942 | 0.815818 | 7.61E-52 | -1.69E-46 |
MS.gene056638 | MS.gene27041 | 0.822254 | 2.61E-53 | -1.69E-46 |
MS.gene056638 | MS.gene27073 | 0.838421 | 2.90E-57 | -1.69E-46 |
MS.gene056638 | MS.gene27516 | 0.835987 | 1.22E-56 | -1.69E-46 |
MS.gene056638 | MS.gene28319 | 0.807092 | 5.98E-50 | -1.69E-46 |
MS.gene056638 | MS.gene28491 | 0.822908 | 1.84E-53 | -1.69E-46 |
MS.gene056638 | MS.gene28798 | 0.803985 | 2.68E-49 | -1.69E-46 |
MS.gene056638 | MS.gene29383 | 0.810515 | 1.11E-50 | -1.69E-46 |
MS.gene056638 | MS.gene29719 | 0.804947 | 1.69E-49 | -1.69E-46 |
MS.gene056638 | MS.gene30663 | 0.813936 | 1.99E-51 | -1.69E-46 |
MS.gene056638 | MS.gene31648 | 0.801482 | 8.82E-49 | -1.69E-46 |
MS.gene056638 | MS.gene33735 | 0.803964 | 2.71E-49 | -1.69E-46 |
MS.gene056638 | MS.gene33935 | -0.80458 | 2.02E-49 | -1.69E-46 |
MS.gene056638 | MS.gene35764 | 0.839043 | 2.01E-57 | -1.69E-46 |
MS.gene056638 | MS.gene36037 | 0.810646 | 1.04E-50 | -1.69E-46 |
MS.gene056638 | MS.gene38566 | 0.810732 | 9.96E-51 | -1.69E-46 |
MS.gene056638 | MS.gene40330 | 0.812052 | 5.15E-51 | -1.69E-46 |
MS.gene056638 | MS.gene40918 | 0.82915 | 6.05E-55 | -1.69E-46 |
MS.gene056638 | MS.gene42128 | 0.807558 | 4.77E-50 | -1.69E-46 |
MS.gene056638 | MS.gene45374 | 0.800746 | 1.25E-48 | -1.69E-46 |
MS.gene056638 | MS.gene45649 | 0.809203 | 2.13E-50 | -1.69E-46 |
MS.gene056638 | MS.gene47707 | 0.806073 | 9.82E-50 | -1.69E-46 |
MS.gene056638 | MS.gene47822 | 0.803397 | 3.56E-49 | -1.69E-46 |
MS.gene056638 | MS.gene49467 | 0.806484 | 8.05E-50 | -1.69E-46 |
MS.gene056638 | MS.gene49772 | 0.820697 | 5.98E-53 | -1.69E-46 |
MS.gene056638 | MS.gene51557 | 0.820911 | 5.34E-53 | -1.69E-46 |
MS.gene056638 | MS.gene52103 | 0.809882 | 1.52E-50 | -1.69E-46 |
MS.gene056638 | MS.gene52973 | 0.801351 | 9.38E-49 | -1.69E-46 |
MS.gene056638 | MS.gene54331 | 0.800127 | 1.67E-48 | -1.69E-46 |
MS.gene056638 | MS.gene54766 | 0.833163 | 6.24E-56 | -1.69E-46 |
MS.gene056638 | MS.gene54884 | 0.811694 | 6.16E-51 | -1.69E-46 |
MS.gene056638 | MS.gene55063 | 0.810326 | 1.22E-50 | -1.69E-46 |
MS.gene056638 | MS.gene57128 | 0.830531 | 2.79E-55 | -1.69E-46 |
MS.gene056638 | MS.gene57847 | 0.818187 | 2.23E-52 | -1.69E-46 |
MS.gene056638 | MS.gene58467 | 0.800502 | 1.40E-48 | -1.69E-46 |
MS.gene056638 | MS.gene58579 | 0.8079 | 4.03E-50 | -1.69E-46 |
MS.gene056638 | MS.gene60120 | 0.845596 | 3.68E-59 | -1.69E-46 |
MS.gene056638 | MS.gene60265 | 0.804782 | 1.83E-49 | -1.69E-46 |
MS.gene056638 | MS.gene61257 | 0.811742 | 6.01E-51 | -1.69E-46 |
MS.gene056638 | MS.gene61288 | 0.83206 | 1.17E-55 | -1.69E-46 |
MS.gene056638 | MS.gene61682 | 0.817889 | 2.61E-52 | -1.69E-46 |
MS.gene056638 | MS.gene64170 | 0.811698 | 6.15E-51 | -1.69E-46 |
MS.gene056638 | MS.gene67107 | 0.804757 | 1.85E-49 | -1.69E-46 |
MS.gene056638 | MS.gene68115 | 0.803543 | 3.32E-49 | -1.69E-46 |
MS.gene056638 | MS.gene68119 | 0.800502 | 1.40E-48 | -1.69E-46 |
MS.gene056638 | MS.gene68264 | 0.806068 | 9.84E-50 | -1.69E-46 |
MS.gene056638 | MS.gene69821 | 0.837596 | 4.73E-57 | -1.69E-46 |
MS.gene056638 | MS.gene70112 | 0.818182 | 2.24E-52 | -1.69E-46 |
MS.gene056638 | MS.gene70282 | 0.807128 | 5.88E-50 | -1.69E-46 |
MS.gene056638 | MS.gene70317 | 0.800848 | 1.19E-48 | -1.69E-46 |
MS.gene056638 | MS.gene70613 | 0.808426 | 3.12E-50 | -1.69E-46 |
MS.gene056638 | MS.gene71988 | 0.810047 | 1.40E-50 | -1.69E-46 |
MS.gene056638 | MS.gene72376 | 0.811633 | 6.35E-51 | -1.69E-46 |
MS.gene056638 | MS.gene73245 | 0.813692 | 2.25E-51 | -1.69E-46 |
MS.gene056638 | MS.gene74237 | 0.803672 | 3.12E-49 | -1.69E-46 |
MS.gene056638 | MS.gene74900 | 0.819796 | 9.62E-53 | -1.69E-46 |
MS.gene056638 | MS.gene75060 | 0.801478 | 8.84E-49 | -1.69E-46 |
MS.gene056638 | MS.gene75062 | 0.806094 | 9.72E-50 | -1.69E-46 |
MS.gene056638 | MS.gene75412 | 0.831698 | 1.44E-55 | -1.69E-46 |
MS.gene056638 | MS.gene75413 | 0.839905 | 1.20E-57 | -1.69E-46 |
MS.gene056638 | MS.gene75781 | 0.82828 | 9.81E-55 | -1.69E-46 |
MS.gene056638 | MS.gene75942 | 0.804272 | 2.34E-49 | -1.69E-46 |
MS.gene056638 | MS.gene76222 | 0.808782 | 2.61E-50 | -1.69E-46 |
MS.gene056638 | MS.gene77759 | 0.804922 | 1.71E-49 | -1.69E-46 |
MS.gene056638 | MS.gene81703 | 0.801841 | 7.44E-49 | -1.69E-46 |
MS.gene056638 | MS.gene81768 | 0.814571 | 1.44E-51 | -1.69E-46 |
MS.gene056638 | MS.gene86241 | 0.81878 | 1.64E-52 | -1.69E-46 |
MS.gene056638 | MS.gene87673 | 0.827844 | 1.25E-54 | -1.69E-46 |
MS.gene056638 | MS.gene89712 | 0.822732 | 2.02E-53 | -1.69E-46 |
MS.gene056638 | MS.gene89902 | 0.804009 | 2.65E-49 | -1.69E-46 |
MS.gene056638 | MS.gene90261 | 0.820071 | 8.32E-53 | -1.69E-46 |
MS.gene056638 | MS.gene90882 | 0.806504 | 7.97E-50 | -1.69E-46 |
MS.gene056638 | MS.gene91006 | 0.823985 | 1.03E-53 | -1.69E-46 |
MS.gene056638 | MS.gene92186 | 0.808035 | 3.77E-50 | -1.69E-46 |
MS.gene056638 | MS.gene92945 | 0.805273 | 1.45E-49 | -1.69E-46 |
MS.gene056638 | MS.gene93155 | 0.828377 | 9.30E-55 | -1.69E-46 |
MS.gene056638 | MS.gene93985 | 0.803088 | 4.12E-49 | -1.69E-46 |
MS.gene056638 | MS.gene94111 | 0.807909 | 4.01E-50 | -1.69E-46 |
MS.gene056638 | MS.gene94183 | 0.801084 | 1.06E-48 | -1.69E-46 |
MS.gene056638 | MS.gene97896 | 0.806664 | 7.37E-50 | -1.69E-46 |
MS.gene056638 | MS.gene98436 | 0.814624 | 1.40E-51 | -1.69E-46 |
MS.gene056638 | MS.gene99525 | 0.809106 | 2.23E-50 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene056638.t1 | MTR_8g089030 | 57.348 | 279 | 101 | 5 | 7 | 269 | 179 | 455 | 8.37e-89 | 278 |
MS.gene056638.t1 | MTR_8g089030 | 56.098 | 82 | 29 | 3 | 7 | 81 | 614 | 695 | 1.37e-16 | 79.7 |
MS.gene056638.t1 | MTR_8g089030 | 57.348 | 279 | 101 | 5 | 7 | 269 | 179 | 455 | 4.56e-87 | 277 |
MS.gene056638.t1 | MTR_8g089030 | 50.355 | 282 | 96 | 6 | 7 | 272 | 614 | 867 | 4.26e-73 | 240 |
MS.gene056638.t1 | MTR_1g073790 | 30.041 | 243 | 130 | 5 | 68 | 272 | 168 | 408 | 1.68e-21 | 94.7 |
MS.gene056638.t1 | MTR_1g044450 | 29.098 | 244 | 132 | 5 | 68 | 272 | 171 | 412 | 1.37e-20 | 92.0 |
MS.gene056638.t1 | MTR_1g073800 | 25.589 | 297 | 157 | 7 | 30 | 272 | 111 | 397 | 1.21e-18 | 85.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene056638.t1 | AT5G43560 | 37.879 | 132 | 80 | 1 | 67 | 196 | 175 | 306 | 1.83e-21 | 94.4 |
MS.gene056638.t1 | AT5G43560 | 37.879 | 132 | 80 | 1 | 67 | 196 | 175 | 306 | 1.83e-21 | 94.4 |
MS.gene056638.t1 | AT5G52330 | 27.016 | 248 | 136 | 6 | 68 | 273 | 75 | 319 | 3.08e-17 | 80.9 |
MS.gene056638.t1 | AT5G52330 | 27.016 | 248 | 136 | 6 | 68 | 273 | 126 | 370 | 4.60e-17 | 80.9 |
MS.gene056638.t1 | AT5G52330 | 27.016 | 248 | 136 | 6 | 68 | 273 | 126 | 370 | 4.60e-17 | 80.9 |
MS.gene056638.t1 | AT5G52330 | 27.016 | 248 | 136 | 6 | 68 | 273 | 126 | 370 | 4.60e-17 | 80.9 |
MS.gene056638.t1 | AT1G04300 | 27.347 | 245 | 137 | 5 | 67 | 272 | 97 | 339 | 4.64e-17 | 81.6 |
MS.gene056638.t1 | AT1G04300 | 27.347 | 245 | 137 | 5 | 67 | 272 | 144 | 386 | 4.69e-17 | 81.6 |
MS.gene056638.t1 | AT1G04300 | 27.347 | 245 | 137 | 5 | 67 | 272 | 155 | 397 | 4.70e-17 | 81.6 |
MS.gene056638.t1 | AT1G04300 | 27.347 | 245 | 137 | 5 | 67 | 272 | 174 | 416 | 4.76e-17 | 81.6 |
MS.gene056638.t1 | AT1G04300 | 27.347 | 245 | 137 | 5 | 67 | 272 | 182 | 424 | 4.77e-17 | 81.6 |
Find 48 sgRNAs with CRISPR-Local
Find 171 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ATGTGCCATCCCTACTTAAA+AGG | 0.210639 | 4.3:-36409792 | MS.gene056638:CDS |
GTTCAATGAACAGAATGATT+TGG | 0.268943 | 4.3:-36409993 | MS.gene056638:CDS |
GGAAAAGGAAGATGTAATTA+AGG | 0.284760 | 4.3:-36409971 | MS.gene056638:CDS |
ACTTAATTTCATTGTGAATC+AGG | 0.285562 | 4.3:+36411188 | None:intergenic |
GGGACAATGCTTTCATATAT+AGG | 0.287041 | 4.3:+36409748 | None:intergenic |
TTGTTCTTGACTATCTATTC+AGG | 0.306654 | 4.3:-36409696 | MS.gene056638:intron |
GTATCGAGCTGAGCTTCTTT+TGG | 0.317600 | 4.3:-36411278 | MS.gene056638:CDS |
TTCAATGAACAGAATGATTT+GGG | 0.320198 | 4.3:-36409992 | MS.gene056638:CDS |
GAATTGCAGATTCAGATTCT+TGG | 0.343032 | 4.3:-36411460 | MS.gene056638:CDS |
GAAAGCATTGTCCCACAGTT+TGG | 0.376185 | 4.3:-36409739 | MS.gene056638:CDS |
AATTGCAGATTCAGATTCTT+GGG | 0.385387 | 4.3:-36411459 | MS.gene056638:intron |
AATTTCACAGCTGTTCATAC+TGG | 0.387505 | 4.3:-36411775 | MS.gene056638:CDS |
CGATGGTTATGAATCAATAA+AGG | 0.388786 | 4.3:-36409881 | MS.gene056638:CDS |
TATGAATTTGATTGTGAAGA+AGG | 0.409577 | 4.3:-36411514 | MS.gene056638:CDS |
GAACAGAATGATTTGGGAAA+AGG | 0.412113 | 4.3:-36409986 | MS.gene056638:CDS |
GCTGTGAAATTCCTGTATAT+TGG | 0.413326 | 4.3:+36411787 | None:intergenic |
TGTACTTTCATGATAGAAAG+TGG | 0.473343 | 4.3:-36410021 | MS.gene056638:CDS |
TACCTAAACGTTTAGTTAGC+AGG | 0.480311 | 4.3:+36411662 | None:intergenic |
GGATAAGTTTGTCATATTTG+AGG | 0.483069 | 4.3:-36409845 | MS.gene056638:CDS |
TCACTTTGTGATGGTTATAC+CGG | 0.485058 | 4.3:-36411538 | MS.gene056638:CDS |
GTGACTCAATCGAACTGAAA+AGG | 0.486271 | 4.3:-36409173 | MS.gene056638:CDS |
GTTTAGTTAGCAGGTAGTCA+TGG | 0.486296 | 4.3:+36411671 | None:intergenic |
TTTAGTTAGCAGGTAGTCAT+GGG | 0.490628 | 4.3:+36411672 | None:intergenic |
CAGCTCGATACTTCTTTACA+AGG | 0.495077 | 4.3:+36411290 | None:intergenic |
ACTTCTTTACAAGGAGAGGC+TGG | 0.502762 | 4.3:+36411299 | None:intergenic |
TGTGACATCTCCTTTGCTAA+TGG | 0.517589 | 4.3:-36409914 | MS.gene056638:CDS |
AGATTGATATGCCAATATAC+AGG | 0.522963 | 4.3:-36411798 | None:intergenic |
TGTGCCATCCCTACTTAAAA+GGG | 0.523105 | 4.3:-36409791 | MS.gene056638:CDS |
TTCACAATCAAATTCATAGC+CGG | 0.524784 | 4.3:+36411519 | None:intergenic |
TACCTGCTAACTAAACGTTT+AGG | 0.524900 | 4.3:-36411664 | MS.gene056638:intron |
CTATTCCACTCACTTTGTGA+TGG | 0.531983 | 4.3:-36411547 | MS.gene056638:CDS |
AGATGTAATTAAGGAAGCCT+TGG | 0.532966 | 4.3:-36409962 | MS.gene056638:CDS |
TTGTCATATTTGAGGACGAA+TGG | 0.538916 | 4.3:-36409837 | MS.gene056638:CDS |
TGATTCACAATGAAATTAAG+TGG | 0.540946 | 4.3:-36411186 | MS.gene056638:CDS |
CGATACTTCTTTACAAGGAG+AGG | 0.559558 | 4.3:+36411295 | None:intergenic |
ACAATGAAATTAAGTGGCCA+AGG | 0.567859 | 4.3:-36411180 | MS.gene056638:intron |
AATAAAGGCTAACAATACTA+CGG | 0.575555 | 4.3:-36409866 | MS.gene056638:CDS |
TATAATATCTCCATTAGCAA+AGG | 0.582185 | 4.3:+36409904 | None:intergenic |
TGAGGACGAATGGTTTGAGT+TGG | 0.583268 | 4.3:-36409827 | MS.gene056638:CDS |
ACAGTTTGGTTGCATGATTG+TGG | 0.586729 | 4.3:-36409725 | MS.gene056638:CDS |
GTGCTCAGTGCATAAAACAT+TGG | 0.590886 | 4.3:+36411712 | None:intergenic |
CAATCATGCAACCAAACTGT+GGG | 0.620049 | 4.3:+36409728 | None:intergenic |
ACAATCATGCAACCAAACTG+TGG | 0.621941 | 4.3:+36409727 | None:intergenic |
TATAACCATCACAAAGTGAG+TGG | 0.636863 | 4.3:+36411542 | None:intergenic |
TTAGTTAGCAGGTAGTCATG+GGG | 0.649914 | 4.3:+36411673 | None:intergenic |
CTAATGGAGATATTATACGA+TGG | 0.661760 | 4.3:-36409898 | MS.gene056638:CDS |
TAGTTAGCAGGTAGTCATGG+GGG | 0.712376 | 4.3:+36411674 | None:intergenic |
AGATAAATCAAATTTCAACG+AGG | 0.780113 | 4.3:+36411750 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AATGCTTATAATTAATTATA+TGG | + | chr4.3:36409562-36409581 | None:intergenic | 10.0% |
!! | ATATAATTAATTATAAGCAT+TGG | - | chr4.3:36409561-36409580 | MS.gene056638:intron | 10.0% |
!! | TATAATTAATTATAAGCATT+GGG | - | chr4.3:36409562-36409581 | MS.gene056638:intron | 10.0% |
!! | TATTCAACAAAAAAAAAAAA+CGG | - | chr4.3:36410834-36410853 | MS.gene056638:intron | 10.0% |
!!! | TATTTATTTTTGAAGAAAAA+TGG | - | chr4.3:36411446-36411465 | MS.gene056638:intron | 10.0% |
!! | AAAAAAGTAAAAAAATACCT+TGG | + | chr4.3:36409785-36409804 | None:intergenic | 15.0% |
!! | AAATAGGAATAATTAATTAC+AGG | - | chr4.3:36410635-36410654 | MS.gene056638:intron | 15.0% |
!! | AATGTGATATTCTTAATTTA+TGG | - | chr4.3:36410782-36410801 | MS.gene056638:intron | 15.0% |
!! | ATCAAATAGTTAACAAAATA+AGG | + | chr4.3:36411589-36411608 | None:intergenic | 15.0% |
!! | ATGTGATATTCTTAATTTAT+GGG | - | chr4.3:36410783-36410802 | MS.gene056638:intron | 15.0% |
!! | ATTCAACAAAAAAAAAAAAC+GGG | - | chr4.3:36410835-36410854 | MS.gene056638:intron | 15.0% |
!! | ATTTAATTAATAGATGTGTA+TGG | - | chr4.3:36409887-36409906 | MS.gene056638:CDS | 15.0% |
!! | CAAAAAGATATAACAAATTA+TGG | - | chr4.3:36410232-36410251 | MS.gene056638:intron | 15.0% |
!! | GTCAATAAATAAATCATATA+TGG | + | chr4.3:36411277-36411296 | None:intergenic | 15.0% |
!!! | ATTAATTATTCCTATTTCTA+AGG | + | chr4.3:36410632-36410651 | None:intergenic | 15.0% |
!!! | TGAATTTTAATAATATATGG+TGG | - | chr4.3:36409920-36409939 | MS.gene056638:CDS | 15.0% |
!! | AAAGATATAACAAATTATGG+TGG | - | chr4.3:36410235-36410254 | MS.gene056638:intron | 20.0% |
!! | GAGAAAAATGTGAAAAAAAT+GGG | - | chr4.3:36411516-36411535 | MS.gene056638:CDS | 20.0% |
!! | TAACATTGCAGTATTTATAA+GGG | + | chr4.3:36410300-36410319 | None:intergenic | 20.0% |
!! | TATTGTTTGTGTCAATTATT+TGG | + | chr4.3:36410208-36410227 | None:intergenic | 20.0% |
!! | TTAACATTGCAGTATTTATA+AGG | + | chr4.3:36410301-36410320 | None:intergenic | 20.0% |
!! | TTTGTTGAATAACAAAACAT+GGG | + | chr4.3:36410825-36410844 | None:intergenic | 20.0% |
!!! | ATATTTTTTATGTGAACTGT+GGG | - | chr4.3:36410267-36410286 | MS.gene056638:intron | 20.0% |
!!! | ATTATTTATTTAATGGATGC+AGG | - | chr4.3:36411721-36411740 | MS.gene056638:CDS | 20.0% |
!!! | CATTTTTTTCACATTTTTCT+CGG | + | chr4.3:36411517-36411536 | None:intergenic | 20.0% |
!!! | TATTGATTTGAGTAACTAAA+TGG | + | chr4.3:36410517-36410536 | None:intergenic | 20.0% |
!!! | TTTTGTTGAATAACAAAACA+TGG | + | chr4.3:36410826-36410845 | None:intergenic | 20.0% |
! | AATAAAGGCTAACAATACTA+CGG | - | chr4.3:36411079-36411098 | MS.gene056638:intron | 25.0% |
! | AATACTGCAATGTTAAACAA+TGG | - | chr4.3:36410305-36410324 | MS.gene056638:intron | 25.0% |
! | AATATAAAGAAACAAGACTC+AGG | + | chr4.3:36411299-36411318 | None:intergenic | 25.0% |
! | ACTTAATTTCATTGTGAATC+AGG | + | chr4.3:36409760-36409779 | None:intergenic | 25.0% |
! | AGATAAATCAAATTTCAACG+AGG | + | chr4.3:36409198-36409217 | None:intergenic | 25.0% |
! | ATTAGCAAACAAAAAACTTG+AGG | + | chr4.3:36410871-36410890 | None:intergenic | 25.0% |
! | CGAGAAAAATGTGAAAAAAA+TGG | - | chr4.3:36411515-36411534 | MS.gene056638:CDS | 25.0% |
! | GGAATAATTAATTACAGGAT+AGG | - | chr4.3:36410640-36410659 | MS.gene056638:intron | 25.0% |
! | TAAAAAAAATTGATGCACCA+AGG | + | chr4.3:36411003-36411022 | None:intergenic | 25.0% |
! | TATAATATCTCCATTAGCAA+AGG | + | chr4.3:36411044-36411063 | None:intergenic | 25.0% |
! | TATGAATTTGATTGTGAAGA+AGG | - | chr4.3:36409431-36409450 | MS.gene056638:intron | 25.0% |
! | TATTTGATAGAAACTGTTTG+TGG | - | chr4.3:36411601-36411620 | MS.gene056638:intron | 25.0% |
! | TGATTCACAATGAAATTAAG+TGG | - | chr4.3:36409759-36409778 | MS.gene056638:CDS | 25.0% |
! | TTAGCAAACAAAAAACTTGA+GGG | + | chr4.3:36410870-36410889 | None:intergenic | 25.0% |
! | TTCAATGAACAGAATGATTT+GGG | - | chr4.3:36410953-36410972 | MS.gene056638:intron | 25.0% |
! | TTGTAAATTTCATTACTGCA+AGG | + | chr4.3:36410346-36410365 | None:intergenic | 25.0% |
!! | TTTGTATTTGATGCTTTTGT+AGG | - | chr4.3:36410729-36410748 | MS.gene056638:intron | 25.0% |
!!! | GATATTTTTTATGTGAACTG+TGG | - | chr4.3:36410266-36410285 | MS.gene056638:intron | 25.0% |
!!! | GTGCATCAATTTTTTTTAGA+TGG | - | chr4.3:36411005-36411024 | MS.gene056638:intron | 25.0% |
!!! | TGATTTTTGCTGTAAATAGA+CGG | - | chr4.3:36411557-36411576 | MS.gene056638:intron | 25.0% |
!!! | TTTTTGAAGAAAAATGGAGA+AGG | - | chr4.3:36411452-36411471 | MS.gene056638:intron | 25.0% |
AAAAAAATGGGAGAAGCAAA+AGG | - | chr4.3:36411528-36411547 | MS.gene056638:CDS | 30.0% | |
AAATGTTGTACAAACGTTGT+AGG | - | chr4.3:36410698-36410717 | MS.gene056638:intron | 30.0% | |
AATTGCAGATTCAGATTCTT+GGG | - | chr4.3:36409486-36409505 | MS.gene056638:intron | 30.0% | |
ACCAACATAATGCATACATA+AGG | + | chr4.3:36409517-36409536 | None:intergenic | 30.0% | |
CGATGGTTATGAATCAATAA+AGG | - | chr4.3:36411064-36411083 | MS.gene056638:intron | 30.0% | |
CTAATGGAGATATTATACGA+TGG | - | chr4.3:36411047-36411066 | MS.gene056638:intron | 30.0% | |
GCATTACGAGATATTCATAA+TGG | - | chr4.3:36410080-36410099 | MS.gene056638:intron | 30.0% | |
GGAAAAGGAAGATGTAATTA+AGG | - | chr4.3:36410974-36410993 | MS.gene056638:intron | 30.0% | |
GGATAAGTTTGTCATATTTG+AGG | - | chr4.3:36411100-36411119 | MS.gene056638:intron | 30.0% | |
GTTCAATGAACAGAATGATT+TGG | - | chr4.3:36410952-36410971 | MS.gene056638:intron | 30.0% | |
TCCTTATGTATGCATTATGT+TGG | - | chr4.3:36409513-36409532 | MS.gene056638:intron | 30.0% | |
TGTACTTTCATGATAGAAAG+TGG | - | chr4.3:36410924-36410943 | MS.gene056638:intron | 30.0% | |
TTAGCATGTCTTAGTTGATT+CGG | - | chr4.3:36409987-36410006 | MS.gene056638:CDS | 30.0% | |
TTCACAATCAAATTCATAGC+CGG | + | chr4.3:36409429-36409448 | None:intergenic | 30.0% | |
TTGTTCTTGACTATCTATTC+AGG | - | chr4.3:36411249-36411268 | MS.gene056638:CDS | 30.0% | |
! | ACTGAATTTTGAACTCATGA+AGG | + | chr4.3:36410106-36410125 | None:intergenic | 30.0% |
! | TCATCATTTGTTAACCCAAA+GGG | - | chr4.3:36410058-36410077 | MS.gene056638:intron | 30.0% |
! | TTCATCATTTGTTAACCCAA+AGG | - | chr4.3:36410057-36410076 | MS.gene056638:intron | 30.0% |
!! | ATCAACAACCCTTTTAAGTA+GGG | + | chr4.3:36411165-36411184 | None:intergenic | 30.0% |
!! | ATTTTTGCTGTAAATAGACG+GGG | - | chr4.3:36411559-36411578 | MS.gene056638:intron | 30.0% |
!! | GATTTTTGCTGTAAATAGAC+GGG | - | chr4.3:36411558-36411577 | MS.gene056638:intron | 30.0% |
!! | TATCAACAACCCTTTTAAGT+AGG | + | chr4.3:36411166-36411185 | None:intergenic | 30.0% |
!!! | TTGTTTTTGAAGCAATGTCT+TGG | - | chr4.3:36410023-36410042 | MS.gene056638:CDS | 30.0% |
AATATCTCGTAATGCCCTTT+GGG | + | chr4.3:36410075-36410094 | None:intergenic | 35.0% | |
AATTTCACAGCTGTTCATAC+TGG | - | chr4.3:36409170-36409189 | MS.gene056638:CDS | 35.0% | |
ACAATGAAATTAAGTGGCCA+AGG | - | chr4.3:36409765-36409784 | MS.gene056638:CDS | 35.0% | |
AGATGTAATTAAGGAAGCCT+TGG | - | chr4.3:36410983-36411002 | MS.gene056638:intron | 35.0% | |
ATCATCAGATTCGAATGAGA+GGG | + | chr4.3:36410142-36410161 | None:intergenic | 35.0% | |
CAACTAAGACATGCTAAACA+TGG | + | chr4.3:36409984-36410003 | None:intergenic | 35.0% | |
CAATCATACAATGAGTTGCA+TGG | + | chr4.3:36409600-36409619 | None:intergenic | 35.0% | |
CTGCAATGTTAAACAATGGA+TGG | - | chr4.3:36410309-36410328 | MS.gene056638:intron | 35.0% | |
CTTCCACAATTTGATATTCC+CGG | + | chr4.3:36410584-36410603 | None:intergenic | 35.0% | |
GAATTGCAGATTCAGATTCT+TGG | - | chr4.3:36409485-36409504 | MS.gene056638:intron | 35.0% | |
GCTGTGAAATTCCTGTATAT+TGG | + | chr4.3:36409161-36409180 | None:intergenic | 35.0% | |
GGGACAATGCTTTCATATAT+AGG | + | chr4.3:36411200-36411219 | None:intergenic | 35.0% | |
TACCTAAACGTTTAGTTAGC+AGG | + | chr4.3:36409286-36409305 | None:intergenic | 35.0% | |
TACCTGCTAACTAAACGTTT+AGG | - | chr4.3:36409281-36409300 | MS.gene056638:intron | 35.0% | |
TATAACCATCACAAAGTGAG+TGG | + | chr4.3:36409406-36409425 | None:intergenic | 35.0% | |
TATCATCAGATTCGAATGAG+AGG | + | chr4.3:36410143-36410162 | None:intergenic | 35.0% | |
TCACTTTGTGATGGTTATAC+CGG | - | chr4.3:36409407-36409426 | MS.gene056638:intron | 35.0% | |
TGCTAACTAAACGTTTAGGT+AGG | - | chr4.3:36409285-36409304 | MS.gene056638:intron | 35.0% | |
TTCCACAATTTGATATTCCC+GGG | + | chr4.3:36410583-36410602 | None:intergenic | 35.0% | |
TTGTCATATTTGAGGACGAA+TGG | - | chr4.3:36411108-36411127 | MS.gene056638:intron | 35.0% | |
TTTAGTTAGCAGGTAGTCAT+GGG | + | chr4.3:36409276-36409295 | None:intergenic | 35.0% | |
! | GAACAGAATGATTTGGGAAA+AGG | - | chr4.3:36410959-36410978 | MS.gene056638:intron | 35.0% |
! | TGTGATACAATAGTGTTGCT+AGG | - | chr4.3:36411367-36411386 | MS.gene056638:intron | 35.0% |
ACAATCATGCAACCAAACTG+TGG | + | chr4.3:36411221-36411240 | None:intergenic | 40.0% | |
ACAGTTTGGTTGCATGATTG+TGG | - | chr4.3:36411220-36411239 | MS.gene056638:CDS | 40.0% | |
ACTGGCACTTCCTTAGAAAT+AGG | - | chr4.3:36410619-36410638 | MS.gene056638:intron | 40.0% | |
AGAACCATTCTCATCTCAGT+GGG | + | chr4.3:36410399-36410418 | None:intergenic | 40.0% | |
ATGTGCCATCCCTACTTAAA+AGG | - | chr4.3:36411153-36411172 | MS.gene056638:intron | 40.0% | |
CAATCATGCAACCAAACTGT+GGG | + | chr4.3:36411220-36411239 | None:intergenic | 40.0% | |
CAGCTCGATACTTCTTTACA+AGG | + | chr4.3:36409658-36409677 | None:intergenic | 40.0% | |
CGATACTTCTTTACAAGGAG+AGG | + | chr4.3:36409653-36409672 | None:intergenic | 40.0% | |
CGGGAATATCAAATTGTGGA+AGG | - | chr4.3:36410582-36410601 | MS.gene056638:intron | 40.0% | |
CTATTCCACTCACTTTGTGA+TGG | - | chr4.3:36409398-36409417 | MS.gene056638:intron | 40.0% | |
GAATATCTCGTAATGCCCTT+TGG | + | chr4.3:36410076-36410095 | None:intergenic | 40.0% | |
GTGACTCAATCGAACTGAAA+AGG | - | chr4.3:36411772-36411791 | MS.gene056638:CDS | 40.0% | |
GTGCTCAGTGCATAAAACAT+TGG | + | chr4.3:36409236-36409255 | None:intergenic | 40.0% | |
GTTTAGTTAGCAGGTAGTCA+TGG | + | chr4.3:36409277-36409296 | None:intergenic | 40.0% | |
TAGAATATGATCAGCCTGCA+CGG | + | chr4.3:36411416-36411435 | None:intergenic | 40.0% | |
TGAGTAACTAAATGGACACG+TGG | + | chr4.3:36410509-36410528 | None:intergenic | 40.0% | |
TGTGACATCTCCTTTGCTAA+TGG | - | chr4.3:36411031-36411050 | MS.gene056638:intron | 40.0% | |
TGTGCCATCCCTACTTAAAA+GGG | - | chr4.3:36411154-36411173 | MS.gene056638:intron | 40.0% | |
TTAGTTAGCAGGTAGTCATG+GGG | + | chr4.3:36409275-36409294 | None:intergenic | 40.0% | |
! | AGAAGGTTTTCTTGACGATG+AGG | - | chr4.3:36409448-36409467 | MS.gene056638:intron | 40.0% |
! | GAAGGTTTTCTTGACGATGA+GGG | - | chr4.3:36409449-36409468 | MS.gene056638:intron | 40.0% |
!! | ACAACCCTTTTAAGTAGGGA+TGG | + | chr4.3:36411161-36411180 | None:intergenic | 40.0% |
!! | CAATAGTGTTGCTAGGCTTT+TGG | - | chr4.3:36411374-36411393 | MS.gene056638:intron | 40.0% |
!! | TATTTCTAAGGAAGTGCCAG+TGG | + | chr4.3:36410620-36410639 | None:intergenic | 40.0% |
!!! | GAAGAAGAGCATACTGGTTT+TGG | + | chr4.3:36410447-36410466 | None:intergenic | 40.0% |
AACCATTCTCATCTCAGTGG+GGG | + | chr4.3:36410397-36410416 | None:intergenic | 45.0% | |
AAGGACCAAGTCAATTCCAC+TGG | - | chr4.3:36410601-36410620 | MS.gene056638:intron | 45.0% | |
AAGTGCCAGTGGAATTGACT+TGG | + | chr4.3:36410609-36410628 | None:intergenic | 45.0% | |
ACTTCTTTACAAGGAGAGGC+TGG | + | chr4.3:36409649-36409668 | None:intergenic | 45.0% | |
CAATTTGATATTCCCGGGAG+CGG | + | chr4.3:36410578-36410597 | None:intergenic | 45.0% | |
CATCACTCTGTTGTCAAACG+CGG | - | chr4.3:36410540-36410559 | MS.gene056638:intron | 45.0% | |
CGAGTAAGCATCTCGTCATT+AGG | - | chr4.3:36409945-36409964 | MS.gene056638:CDS | 45.0% | |
CTCCCGGGAATATCAAATTG+TGG | - | chr4.3:36410578-36410597 | MS.gene056638:intron | 45.0% | |
GAACCATTCTCATCTCAGTG+GGG | + | chr4.3:36410398-36410417 | None:intergenic | 45.0% | |
GAGAACCATTCTCATCTCAG+TGG | + | chr4.3:36410400-36410419 | None:intergenic | 45.0% | |
GAGGAAAAGATTGACCCAAG+GGG | + | chr4.3:36410473-36410492 | None:intergenic | 45.0% | |
GGAGGAAAAGATTGACCCAA+GGG | + | chr4.3:36410474-36410493 | None:intergenic | 45.0% | |
TAGTTAGCAGGTAGTCATGG+GGG | + | chr4.3:36409274-36409293 | None:intergenic | 45.0% | |
TGAGGACGAATGGTTTGAGT+TGG | - | chr4.3:36411118-36411137 | MS.gene056638:intron | 45.0% | |
TGGAGGAAAAGATTGACCCA+AGG | + | chr4.3:36410475-36410494 | None:intergenic | 45.0% | |
! | GGGAGAGTATGCTGAAATCA+GGG | + | chr4.3:36410166-36410185 | None:intergenic | 45.0% |
! | GTATCGAGCTGAGCTTCTTT+TGG | - | chr4.3:36409667-36409686 | MS.gene056638:intron | 45.0% |
!! | GAAAGCATTGTCCCACAGTT+TGG | - | chr4.3:36411206-36411225 | MS.gene056638:CDS | 45.0% |
!!! | ACTGGTTTTGGAGATGGAAG+TGG | + | chr4.3:36410435-36410454 | None:intergenic | 45.0% |
!!! | CTGGTTTTGGAGATGGAAGT+GGG | + | chr4.3:36410434-36410453 | None:intergenic | 45.0% |
!!! | GAGCATACTGGTTTTGGAGA+TGG | + | chr4.3:36410441-36410460 | None:intergenic | 45.0% |
!! | ATATATTATTAAAATTCAAA+TGG | + | chr4.3:36409918-36409937 | None:intergenic | 5.0% |
!! | TATTCTAATTATTTATTTAA+TGG | - | chr4.3:36411714-36411733 | MS.gene056638:CDS | 5.0% |
!!! | ATTTGAATTTTAATAATATA+TGG | - | chr4.3:36409917-36409936 | MS.gene056638:CDS | 5.0% |
!!! | TGATATTTTATTTATTATTA+TGG | - | chr4.3:36409826-36409845 | MS.gene056638:CDS | 5.0% |
ACCATTCTCATCTCAGTGGG+GGG | + | chr4.3:36410396-36410415 | None:intergenic | 50.0% | |
ATGCTCTTCTTCACACCCCT+TGG | - | chr4.3:36410455-36410474 | MS.gene056638:intron | 50.0% | |
ATTTCAGCATACTCTCCCCC+AGG | - | chr4.3:36410168-36410187 | MS.gene056638:intron | 50.0% | |
TAAATGGACACGTGGCAGCA+GGG | + | chr4.3:36410501-36410520 | None:intergenic | 50.0% | |
TGATATCCAGTAGACCGTGC+AGG | - | chr4.3:36411684-36411703 | MS.gene056638:CDS | 50.0% | |
TGCTCTTCTTCACACCCCTT+GGG | - | chr4.3:36410456-36410475 | MS.gene056638:intron | 50.0% | |
TGGCATTTCGAGCTCAACCT+GGG | + | chr4.3:36410188-36410207 | None:intergenic | 50.0% | |
TGTTATCCAGTAGACCGTGC+AGG | - | chr4.3:36411399-36411418 | MS.gene056638:intron | 50.0% | |
TTGGCATTTCGAGCTCAACC+TGG | + | chr4.3:36410189-36410208 | None:intergenic | 50.0% | |
TTTGGAGATGGAAGTGGGAC+TGG | + | chr4.3:36410429-36410448 | None:intergenic | 50.0% | |
! | GGGGAGAGTATGCTGAAATC+AGG | + | chr4.3:36410167-36410186 | None:intergenic | 50.0% |
! | GGGTGTGAAGAAGAGCATAC+TGG | + | chr4.3:36410453-36410472 | None:intergenic | 50.0% |
AAATGGACACGTGGCAGCAG+GGG | + | chr4.3:36410500-36410519 | None:intergenic | 55.0% | |
CTAAATGGACACGTGGCAGC+AGG | + | chr4.3:36410502-36410521 | None:intergenic | 55.0% | |
GCATTTCGAGCTCAACCTGG+GGG | + | chr4.3:36410186-36410205 | None:intergenic | 55.0% | |
GGCATTTCGAGCTCAACCTG+GGG | + | chr4.3:36410187-36410206 | None:intergenic | 55.0% | |
GATCAGCCTGCACGGTCTAC+TGG | + | chr4.3:36411408-36411427 | None:intergenic | 60.0% | |
GCCCCCCACTGAGATGAGAA+TGG | - | chr4.3:36410392-36410411 | MS.gene056638:intron | 60.0% | |
!! | CTCAGTGGGGGGCATTCTCT+TGG | + | chr4.3:36410385-36410404 | None:intergenic | 60.0% |
ACGTGGCAGCAGGGGAATGG+AGG | + | chr4.3:36410492-36410511 | None:intergenic | 65.0% | |
GACACGTGGCAGCAGGGGAA+TGG | + | chr4.3:36410495-36410514 | None:intergenic | 65.0% | |
TTGTCAAACGCGGCCGCTCC+CGG | - | chr4.3:36410550-36410569 | MS.gene056638:intron | 65.0% | |
ATATTCCCGGGAGCGGCGCC+GGG | + | chr4.3:36410571-36410590 | None:intergenic | 70.0% | |
GATATTCCCGGGAGCGGCGC+CGG | + | chr4.3:36410572-36410591 | None:intergenic | 70.0% | |
! | CCGCTCCCGGCGCCGCTCCC+GGG | - | chr4.3:36410563-36410582 | MS.gene056638:intron | 90.0% |
! | GCCGCTCCCGGCGCCGCTCC+CGG | - | chr4.3:36410562-36410581 | MS.gene056638:intron | 90.0% |
!! | CCCGGGAGCGGCGCCGGGAG+CGG | + | chr4.3:36410566-36410585 | None:intergenic | 90.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.3 | gene | 36409155 | 36411812 | 36409155 | ID=MS.gene056638 |
chr4.3 | mRNA | 36409155 | 36411812 | 36409155 | ID=MS.gene056638.t1;Parent=MS.gene056638 |
chr4.3 | exon | 36411665 | 36411812 | 36411665 | ID=MS.gene056638.t1.exon1;Parent=MS.gene056638.t1 |
chr4.3 | CDS | 36411665 | 36411812 | 36411665 | ID=cds.MS.gene056638.t1;Parent=MS.gene056638.t1 |
chr4.3 | exon | 36411460 | 36411571 | 36411460 | ID=MS.gene056638.t1.exon2;Parent=MS.gene056638.t1 |
chr4.3 | CDS | 36411460 | 36411571 | 36411460 | ID=cds.MS.gene056638.t1;Parent=MS.gene056638.t1 |
chr4.3 | exon | 36411181 | 36411333 | 36411181 | ID=MS.gene056638.t1.exon3;Parent=MS.gene056638.t1 |
chr4.3 | CDS | 36411181 | 36411333 | 36411181 | ID=cds.MS.gene056638.t1;Parent=MS.gene056638.t1 |
chr4.3 | exon | 36409697 | 36410047 | 36409697 | ID=MS.gene056638.t1.exon4;Parent=MS.gene056638.t1 |
chr4.3 | CDS | 36409697 | 36410047 | 36409697 | ID=cds.MS.gene056638.t1;Parent=MS.gene056638.t1 |
chr4.3 | exon | 36409155 | 36409224 | 36409155 | ID=MS.gene056638.t1.exon5;Parent=MS.gene056638.t1 |
chr4.3 | CDS | 36409155 | 36409224 | 36409155 | ID=cds.MS.gene056638.t1;Parent=MS.gene056638.t1 |
Gene Sequence |
Protein sequence |