AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene056638


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene056638.t1 MTR_8g089030 57.348 279 101 5 7 269 179 455 8.37e-89 278
MS.gene056638.t1 MTR_8g089030 56.098 82 29 3 7 81 614 695 1.37e-16 79.7
MS.gene056638.t1 MTR_8g089030 57.348 279 101 5 7 269 179 455 4.56e-87 277
MS.gene056638.t1 MTR_8g089030 50.355 282 96 6 7 272 614 867 4.26e-73 240
MS.gene056638.t1 MTR_1g073790 30.041 243 130 5 68 272 168 408 1.68e-21 94.7
MS.gene056638.t1 MTR_1g044450 29.098 244 132 5 68 272 171 412 1.37e-20 92.0
MS.gene056638.t1 MTR_1g073800 25.589 297 157 7 30 272 111 397 1.21e-18 85.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene056638.t1 AT5G43560 37.879 132 80 1 67 196 175 306 1.83e-21 94.4
MS.gene056638.t1 AT5G43560 37.879 132 80 1 67 196 175 306 1.83e-21 94.4
MS.gene056638.t1 AT5G52330 27.016 248 136 6 68 273 75 319 3.08e-17 80.9
MS.gene056638.t1 AT5G52330 27.016 248 136 6 68 273 126 370 4.60e-17 80.9
MS.gene056638.t1 AT5G52330 27.016 248 136 6 68 273 126 370 4.60e-17 80.9
MS.gene056638.t1 AT5G52330 27.016 248 136 6 68 273 126 370 4.60e-17 80.9
MS.gene056638.t1 AT1G04300 27.347 245 137 5 67 272 97 339 4.64e-17 81.6
MS.gene056638.t1 AT1G04300 27.347 245 137 5 67 272 144 386 4.69e-17 81.6
MS.gene056638.t1 AT1G04300 27.347 245 137 5 67 272 155 397 4.70e-17 81.6
MS.gene056638.t1 AT1G04300 27.347 245 137 5 67 272 174 416 4.76e-17 81.6
MS.gene056638.t1 AT1G04300 27.347 245 137 5 67 272 182 424 4.77e-17 81.6

Find 48 sgRNAs with CRISPR-Local

Find 171 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGTGCCATCCCTACTTAAA+AGG 0.210639 4.3:-36409792 MS.gene056638:CDS
GTTCAATGAACAGAATGATT+TGG 0.268943 4.3:-36409993 MS.gene056638:CDS
GGAAAAGGAAGATGTAATTA+AGG 0.284760 4.3:-36409971 MS.gene056638:CDS
ACTTAATTTCATTGTGAATC+AGG 0.285562 4.3:+36411188 None:intergenic
GGGACAATGCTTTCATATAT+AGG 0.287041 4.3:+36409748 None:intergenic
TTGTTCTTGACTATCTATTC+AGG 0.306654 4.3:-36409696 MS.gene056638:intron
GTATCGAGCTGAGCTTCTTT+TGG 0.317600 4.3:-36411278 MS.gene056638:CDS
TTCAATGAACAGAATGATTT+GGG 0.320198 4.3:-36409992 MS.gene056638:CDS
GAATTGCAGATTCAGATTCT+TGG 0.343032 4.3:-36411460 MS.gene056638:CDS
GAAAGCATTGTCCCACAGTT+TGG 0.376185 4.3:-36409739 MS.gene056638:CDS
AATTGCAGATTCAGATTCTT+GGG 0.385387 4.3:-36411459 MS.gene056638:intron
AATTTCACAGCTGTTCATAC+TGG 0.387505 4.3:-36411775 MS.gene056638:CDS
CGATGGTTATGAATCAATAA+AGG 0.388786 4.3:-36409881 MS.gene056638:CDS
TATGAATTTGATTGTGAAGA+AGG 0.409577 4.3:-36411514 MS.gene056638:CDS
GAACAGAATGATTTGGGAAA+AGG 0.412113 4.3:-36409986 MS.gene056638:CDS
GCTGTGAAATTCCTGTATAT+TGG 0.413326 4.3:+36411787 None:intergenic
TGTACTTTCATGATAGAAAG+TGG 0.473343 4.3:-36410021 MS.gene056638:CDS
TACCTAAACGTTTAGTTAGC+AGG 0.480311 4.3:+36411662 None:intergenic
GGATAAGTTTGTCATATTTG+AGG 0.483069 4.3:-36409845 MS.gene056638:CDS
TCACTTTGTGATGGTTATAC+CGG 0.485058 4.3:-36411538 MS.gene056638:CDS
GTGACTCAATCGAACTGAAA+AGG 0.486271 4.3:-36409173 MS.gene056638:CDS
GTTTAGTTAGCAGGTAGTCA+TGG 0.486296 4.3:+36411671 None:intergenic
TTTAGTTAGCAGGTAGTCAT+GGG 0.490628 4.3:+36411672 None:intergenic
CAGCTCGATACTTCTTTACA+AGG 0.495077 4.3:+36411290 None:intergenic
ACTTCTTTACAAGGAGAGGC+TGG 0.502762 4.3:+36411299 None:intergenic
TGTGACATCTCCTTTGCTAA+TGG 0.517589 4.3:-36409914 MS.gene056638:CDS
AGATTGATATGCCAATATAC+AGG 0.522963 4.3:-36411798 None:intergenic
TGTGCCATCCCTACTTAAAA+GGG 0.523105 4.3:-36409791 MS.gene056638:CDS
TTCACAATCAAATTCATAGC+CGG 0.524784 4.3:+36411519 None:intergenic
TACCTGCTAACTAAACGTTT+AGG 0.524900 4.3:-36411664 MS.gene056638:intron
CTATTCCACTCACTTTGTGA+TGG 0.531983 4.3:-36411547 MS.gene056638:CDS
AGATGTAATTAAGGAAGCCT+TGG 0.532966 4.3:-36409962 MS.gene056638:CDS
TTGTCATATTTGAGGACGAA+TGG 0.538916 4.3:-36409837 MS.gene056638:CDS
TGATTCACAATGAAATTAAG+TGG 0.540946 4.3:-36411186 MS.gene056638:CDS
CGATACTTCTTTACAAGGAG+AGG 0.559558 4.3:+36411295 None:intergenic
ACAATGAAATTAAGTGGCCA+AGG 0.567859 4.3:-36411180 MS.gene056638:intron
AATAAAGGCTAACAATACTA+CGG 0.575555 4.3:-36409866 MS.gene056638:CDS
TATAATATCTCCATTAGCAA+AGG 0.582185 4.3:+36409904 None:intergenic
TGAGGACGAATGGTTTGAGT+TGG 0.583268 4.3:-36409827 MS.gene056638:CDS
ACAGTTTGGTTGCATGATTG+TGG 0.586729 4.3:-36409725 MS.gene056638:CDS
GTGCTCAGTGCATAAAACAT+TGG 0.590886 4.3:+36411712 None:intergenic
CAATCATGCAACCAAACTGT+GGG 0.620049 4.3:+36409728 None:intergenic
ACAATCATGCAACCAAACTG+TGG 0.621941 4.3:+36409727 None:intergenic
TATAACCATCACAAAGTGAG+TGG 0.636863 4.3:+36411542 None:intergenic
TTAGTTAGCAGGTAGTCATG+GGG 0.649914 4.3:+36411673 None:intergenic
CTAATGGAGATATTATACGA+TGG 0.661760 4.3:-36409898 MS.gene056638:CDS
TAGTTAGCAGGTAGTCATGG+GGG 0.712376 4.3:+36411674 None:intergenic
AGATAAATCAAATTTCAACG+AGG 0.780113 4.3:+36411750 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATGCTTATAATTAATTATA+TGG + chr4.3:36409562-36409581 None:intergenic 10.0%
!! ATATAATTAATTATAAGCAT+TGG - chr4.3:36409561-36409580 MS.gene056638:intron 10.0%
!! TATAATTAATTATAAGCATT+GGG - chr4.3:36409562-36409581 MS.gene056638:intron 10.0%
!! TATTCAACAAAAAAAAAAAA+CGG - chr4.3:36410834-36410853 MS.gene056638:intron 10.0%
!!! TATTTATTTTTGAAGAAAAA+TGG - chr4.3:36411446-36411465 MS.gene056638:intron 10.0%
!! AAAAAAGTAAAAAAATACCT+TGG + chr4.3:36409785-36409804 None:intergenic 15.0%
!! AAATAGGAATAATTAATTAC+AGG - chr4.3:36410635-36410654 MS.gene056638:intron 15.0%
!! AATGTGATATTCTTAATTTA+TGG - chr4.3:36410782-36410801 MS.gene056638:intron 15.0%
!! ATCAAATAGTTAACAAAATA+AGG + chr4.3:36411589-36411608 None:intergenic 15.0%
!! ATGTGATATTCTTAATTTAT+GGG - chr4.3:36410783-36410802 MS.gene056638:intron 15.0%
!! ATTCAACAAAAAAAAAAAAC+GGG - chr4.3:36410835-36410854 MS.gene056638:intron 15.0%
!! ATTTAATTAATAGATGTGTA+TGG - chr4.3:36409887-36409906 MS.gene056638:CDS 15.0%
!! CAAAAAGATATAACAAATTA+TGG - chr4.3:36410232-36410251 MS.gene056638:intron 15.0%
!! GTCAATAAATAAATCATATA+TGG + chr4.3:36411277-36411296 None:intergenic 15.0%
!!! ATTAATTATTCCTATTTCTA+AGG + chr4.3:36410632-36410651 None:intergenic 15.0%
!!! TGAATTTTAATAATATATGG+TGG - chr4.3:36409920-36409939 MS.gene056638:CDS 15.0%
!! AAAGATATAACAAATTATGG+TGG - chr4.3:36410235-36410254 MS.gene056638:intron 20.0%
!! GAGAAAAATGTGAAAAAAAT+GGG - chr4.3:36411516-36411535 MS.gene056638:CDS 20.0%
!! TAACATTGCAGTATTTATAA+GGG + chr4.3:36410300-36410319 None:intergenic 20.0%
!! TATTGTTTGTGTCAATTATT+TGG + chr4.3:36410208-36410227 None:intergenic 20.0%
!! TTAACATTGCAGTATTTATA+AGG + chr4.3:36410301-36410320 None:intergenic 20.0%
!! TTTGTTGAATAACAAAACAT+GGG + chr4.3:36410825-36410844 None:intergenic 20.0%
!!! ATATTTTTTATGTGAACTGT+GGG - chr4.3:36410267-36410286 MS.gene056638:intron 20.0%
!!! ATTATTTATTTAATGGATGC+AGG - chr4.3:36411721-36411740 MS.gene056638:CDS 20.0%
!!! CATTTTTTTCACATTTTTCT+CGG + chr4.3:36411517-36411536 None:intergenic 20.0%
!!! TATTGATTTGAGTAACTAAA+TGG + chr4.3:36410517-36410536 None:intergenic 20.0%
!!! TTTTGTTGAATAACAAAACA+TGG + chr4.3:36410826-36410845 None:intergenic 20.0%
! AATAAAGGCTAACAATACTA+CGG - chr4.3:36411079-36411098 MS.gene056638:intron 25.0%
! AATACTGCAATGTTAAACAA+TGG - chr4.3:36410305-36410324 MS.gene056638:intron 25.0%
! AATATAAAGAAACAAGACTC+AGG + chr4.3:36411299-36411318 None:intergenic 25.0%
! ACTTAATTTCATTGTGAATC+AGG + chr4.3:36409760-36409779 None:intergenic 25.0%
! AGATAAATCAAATTTCAACG+AGG + chr4.3:36409198-36409217 None:intergenic 25.0%
! ATTAGCAAACAAAAAACTTG+AGG + chr4.3:36410871-36410890 None:intergenic 25.0%
! CGAGAAAAATGTGAAAAAAA+TGG - chr4.3:36411515-36411534 MS.gene056638:CDS 25.0%
! GGAATAATTAATTACAGGAT+AGG - chr4.3:36410640-36410659 MS.gene056638:intron 25.0%
! TAAAAAAAATTGATGCACCA+AGG + chr4.3:36411003-36411022 None:intergenic 25.0%
! TATAATATCTCCATTAGCAA+AGG + chr4.3:36411044-36411063 None:intergenic 25.0%
! TATGAATTTGATTGTGAAGA+AGG - chr4.3:36409431-36409450 MS.gene056638:intron 25.0%
! TATTTGATAGAAACTGTTTG+TGG - chr4.3:36411601-36411620 MS.gene056638:intron 25.0%
! TGATTCACAATGAAATTAAG+TGG - chr4.3:36409759-36409778 MS.gene056638:CDS 25.0%
! TTAGCAAACAAAAAACTTGA+GGG + chr4.3:36410870-36410889 None:intergenic 25.0%
! TTCAATGAACAGAATGATTT+GGG - chr4.3:36410953-36410972 MS.gene056638:intron 25.0%
! TTGTAAATTTCATTACTGCA+AGG + chr4.3:36410346-36410365 None:intergenic 25.0%
!! TTTGTATTTGATGCTTTTGT+AGG - chr4.3:36410729-36410748 MS.gene056638:intron 25.0%
!!! GATATTTTTTATGTGAACTG+TGG - chr4.3:36410266-36410285 MS.gene056638:intron 25.0%
!!! GTGCATCAATTTTTTTTAGA+TGG - chr4.3:36411005-36411024 MS.gene056638:intron 25.0%
!!! TGATTTTTGCTGTAAATAGA+CGG - chr4.3:36411557-36411576 MS.gene056638:intron 25.0%
!!! TTTTTGAAGAAAAATGGAGA+AGG - chr4.3:36411452-36411471 MS.gene056638:intron 25.0%
AAAAAAATGGGAGAAGCAAA+AGG - chr4.3:36411528-36411547 MS.gene056638:CDS 30.0%
AAATGTTGTACAAACGTTGT+AGG - chr4.3:36410698-36410717 MS.gene056638:intron 30.0%
AATTGCAGATTCAGATTCTT+GGG - chr4.3:36409486-36409505 MS.gene056638:intron 30.0%
ACCAACATAATGCATACATA+AGG + chr4.3:36409517-36409536 None:intergenic 30.0%
CGATGGTTATGAATCAATAA+AGG - chr4.3:36411064-36411083 MS.gene056638:intron 30.0%
CTAATGGAGATATTATACGA+TGG - chr4.3:36411047-36411066 MS.gene056638:intron 30.0%
GCATTACGAGATATTCATAA+TGG - chr4.3:36410080-36410099 MS.gene056638:intron 30.0%
GGAAAAGGAAGATGTAATTA+AGG - chr4.3:36410974-36410993 MS.gene056638:intron 30.0%
GGATAAGTTTGTCATATTTG+AGG - chr4.3:36411100-36411119 MS.gene056638:intron 30.0%
GTTCAATGAACAGAATGATT+TGG - chr4.3:36410952-36410971 MS.gene056638:intron 30.0%
TCCTTATGTATGCATTATGT+TGG - chr4.3:36409513-36409532 MS.gene056638:intron 30.0%
TGTACTTTCATGATAGAAAG+TGG - chr4.3:36410924-36410943 MS.gene056638:intron 30.0%
TTAGCATGTCTTAGTTGATT+CGG - chr4.3:36409987-36410006 MS.gene056638:CDS 30.0%
TTCACAATCAAATTCATAGC+CGG + chr4.3:36409429-36409448 None:intergenic 30.0%
TTGTTCTTGACTATCTATTC+AGG - chr4.3:36411249-36411268 MS.gene056638:CDS 30.0%
! ACTGAATTTTGAACTCATGA+AGG + chr4.3:36410106-36410125 None:intergenic 30.0%
! TCATCATTTGTTAACCCAAA+GGG - chr4.3:36410058-36410077 MS.gene056638:intron 30.0%
! TTCATCATTTGTTAACCCAA+AGG - chr4.3:36410057-36410076 MS.gene056638:intron 30.0%
!! ATCAACAACCCTTTTAAGTA+GGG + chr4.3:36411165-36411184 None:intergenic 30.0%
!! ATTTTTGCTGTAAATAGACG+GGG - chr4.3:36411559-36411578 MS.gene056638:intron 30.0%
!! GATTTTTGCTGTAAATAGAC+GGG - chr4.3:36411558-36411577 MS.gene056638:intron 30.0%
!! TATCAACAACCCTTTTAAGT+AGG + chr4.3:36411166-36411185 None:intergenic 30.0%
!!! TTGTTTTTGAAGCAATGTCT+TGG - chr4.3:36410023-36410042 MS.gene056638:CDS 30.0%
AATATCTCGTAATGCCCTTT+GGG + chr4.3:36410075-36410094 None:intergenic 35.0%
AATTTCACAGCTGTTCATAC+TGG - chr4.3:36409170-36409189 MS.gene056638:CDS 35.0%
ACAATGAAATTAAGTGGCCA+AGG - chr4.3:36409765-36409784 MS.gene056638:CDS 35.0%
AGATGTAATTAAGGAAGCCT+TGG - chr4.3:36410983-36411002 MS.gene056638:intron 35.0%
ATCATCAGATTCGAATGAGA+GGG + chr4.3:36410142-36410161 None:intergenic 35.0%
CAACTAAGACATGCTAAACA+TGG + chr4.3:36409984-36410003 None:intergenic 35.0%
CAATCATACAATGAGTTGCA+TGG + chr4.3:36409600-36409619 None:intergenic 35.0%
CTGCAATGTTAAACAATGGA+TGG - chr4.3:36410309-36410328 MS.gene056638:intron 35.0%
CTTCCACAATTTGATATTCC+CGG + chr4.3:36410584-36410603 None:intergenic 35.0%
GAATTGCAGATTCAGATTCT+TGG - chr4.3:36409485-36409504 MS.gene056638:intron 35.0%
GCTGTGAAATTCCTGTATAT+TGG + chr4.3:36409161-36409180 None:intergenic 35.0%
GGGACAATGCTTTCATATAT+AGG + chr4.3:36411200-36411219 None:intergenic 35.0%
TACCTAAACGTTTAGTTAGC+AGG + chr4.3:36409286-36409305 None:intergenic 35.0%
TACCTGCTAACTAAACGTTT+AGG - chr4.3:36409281-36409300 MS.gene056638:intron 35.0%
TATAACCATCACAAAGTGAG+TGG + chr4.3:36409406-36409425 None:intergenic 35.0%
TATCATCAGATTCGAATGAG+AGG + chr4.3:36410143-36410162 None:intergenic 35.0%
TCACTTTGTGATGGTTATAC+CGG - chr4.3:36409407-36409426 MS.gene056638:intron 35.0%
TGCTAACTAAACGTTTAGGT+AGG - chr4.3:36409285-36409304 MS.gene056638:intron 35.0%
TTCCACAATTTGATATTCCC+GGG + chr4.3:36410583-36410602 None:intergenic 35.0%
TTGTCATATTTGAGGACGAA+TGG - chr4.3:36411108-36411127 MS.gene056638:intron 35.0%
TTTAGTTAGCAGGTAGTCAT+GGG + chr4.3:36409276-36409295 None:intergenic 35.0%
! GAACAGAATGATTTGGGAAA+AGG - chr4.3:36410959-36410978 MS.gene056638:intron 35.0%
! TGTGATACAATAGTGTTGCT+AGG - chr4.3:36411367-36411386 MS.gene056638:intron 35.0%
ACAATCATGCAACCAAACTG+TGG + chr4.3:36411221-36411240 None:intergenic 40.0%
ACAGTTTGGTTGCATGATTG+TGG - chr4.3:36411220-36411239 MS.gene056638:CDS 40.0%
ACTGGCACTTCCTTAGAAAT+AGG - chr4.3:36410619-36410638 MS.gene056638:intron 40.0%
AGAACCATTCTCATCTCAGT+GGG + chr4.3:36410399-36410418 None:intergenic 40.0%
ATGTGCCATCCCTACTTAAA+AGG - chr4.3:36411153-36411172 MS.gene056638:intron 40.0%
CAATCATGCAACCAAACTGT+GGG + chr4.3:36411220-36411239 None:intergenic 40.0%
CAGCTCGATACTTCTTTACA+AGG + chr4.3:36409658-36409677 None:intergenic 40.0%
CGATACTTCTTTACAAGGAG+AGG + chr4.3:36409653-36409672 None:intergenic 40.0%
CGGGAATATCAAATTGTGGA+AGG - chr4.3:36410582-36410601 MS.gene056638:intron 40.0%
CTATTCCACTCACTTTGTGA+TGG - chr4.3:36409398-36409417 MS.gene056638:intron 40.0%
GAATATCTCGTAATGCCCTT+TGG + chr4.3:36410076-36410095 None:intergenic 40.0%
GTGACTCAATCGAACTGAAA+AGG - chr4.3:36411772-36411791 MS.gene056638:CDS 40.0%
GTGCTCAGTGCATAAAACAT+TGG + chr4.3:36409236-36409255 None:intergenic 40.0%
GTTTAGTTAGCAGGTAGTCA+TGG + chr4.3:36409277-36409296 None:intergenic 40.0%
TAGAATATGATCAGCCTGCA+CGG + chr4.3:36411416-36411435 None:intergenic 40.0%
TGAGTAACTAAATGGACACG+TGG + chr4.3:36410509-36410528 None:intergenic 40.0%
TGTGACATCTCCTTTGCTAA+TGG - chr4.3:36411031-36411050 MS.gene056638:intron 40.0%
TGTGCCATCCCTACTTAAAA+GGG - chr4.3:36411154-36411173 MS.gene056638:intron 40.0%
TTAGTTAGCAGGTAGTCATG+GGG + chr4.3:36409275-36409294 None:intergenic 40.0%
! AGAAGGTTTTCTTGACGATG+AGG - chr4.3:36409448-36409467 MS.gene056638:intron 40.0%
! GAAGGTTTTCTTGACGATGA+GGG - chr4.3:36409449-36409468 MS.gene056638:intron 40.0%
!! ACAACCCTTTTAAGTAGGGA+TGG + chr4.3:36411161-36411180 None:intergenic 40.0%
!! CAATAGTGTTGCTAGGCTTT+TGG - chr4.3:36411374-36411393 MS.gene056638:intron 40.0%
!! TATTTCTAAGGAAGTGCCAG+TGG + chr4.3:36410620-36410639 None:intergenic 40.0%
!!! GAAGAAGAGCATACTGGTTT+TGG + chr4.3:36410447-36410466 None:intergenic 40.0%
AACCATTCTCATCTCAGTGG+GGG + chr4.3:36410397-36410416 None:intergenic 45.0%
AAGGACCAAGTCAATTCCAC+TGG - chr4.3:36410601-36410620 MS.gene056638:intron 45.0%
AAGTGCCAGTGGAATTGACT+TGG + chr4.3:36410609-36410628 None:intergenic 45.0%
ACTTCTTTACAAGGAGAGGC+TGG + chr4.3:36409649-36409668 None:intergenic 45.0%
CAATTTGATATTCCCGGGAG+CGG + chr4.3:36410578-36410597 None:intergenic 45.0%
CATCACTCTGTTGTCAAACG+CGG - chr4.3:36410540-36410559 MS.gene056638:intron 45.0%
CGAGTAAGCATCTCGTCATT+AGG - chr4.3:36409945-36409964 MS.gene056638:CDS 45.0%
CTCCCGGGAATATCAAATTG+TGG - chr4.3:36410578-36410597 MS.gene056638:intron 45.0%
GAACCATTCTCATCTCAGTG+GGG + chr4.3:36410398-36410417 None:intergenic 45.0%
GAGAACCATTCTCATCTCAG+TGG + chr4.3:36410400-36410419 None:intergenic 45.0%
GAGGAAAAGATTGACCCAAG+GGG + chr4.3:36410473-36410492 None:intergenic 45.0%
GGAGGAAAAGATTGACCCAA+GGG + chr4.3:36410474-36410493 None:intergenic 45.0%
TAGTTAGCAGGTAGTCATGG+GGG + chr4.3:36409274-36409293 None:intergenic 45.0%
TGAGGACGAATGGTTTGAGT+TGG - chr4.3:36411118-36411137 MS.gene056638:intron 45.0%
TGGAGGAAAAGATTGACCCA+AGG + chr4.3:36410475-36410494 None:intergenic 45.0%
! GGGAGAGTATGCTGAAATCA+GGG + chr4.3:36410166-36410185 None:intergenic 45.0%
! GTATCGAGCTGAGCTTCTTT+TGG - chr4.3:36409667-36409686 MS.gene056638:intron 45.0%
!! GAAAGCATTGTCCCACAGTT+TGG - chr4.3:36411206-36411225 MS.gene056638:CDS 45.0%
!!! ACTGGTTTTGGAGATGGAAG+TGG + chr4.3:36410435-36410454 None:intergenic 45.0%
!!! CTGGTTTTGGAGATGGAAGT+GGG + chr4.3:36410434-36410453 None:intergenic 45.0%
!!! GAGCATACTGGTTTTGGAGA+TGG + chr4.3:36410441-36410460 None:intergenic 45.0%
!! ATATATTATTAAAATTCAAA+TGG + chr4.3:36409918-36409937 None:intergenic 5.0%
!! TATTCTAATTATTTATTTAA+TGG - chr4.3:36411714-36411733 MS.gene056638:CDS 5.0%
!!! ATTTGAATTTTAATAATATA+TGG - chr4.3:36409917-36409936 MS.gene056638:CDS 5.0%
!!! TGATATTTTATTTATTATTA+TGG - chr4.3:36409826-36409845 MS.gene056638:CDS 5.0%
ACCATTCTCATCTCAGTGGG+GGG + chr4.3:36410396-36410415 None:intergenic 50.0%
ATGCTCTTCTTCACACCCCT+TGG - chr4.3:36410455-36410474 MS.gene056638:intron 50.0%
ATTTCAGCATACTCTCCCCC+AGG - chr4.3:36410168-36410187 MS.gene056638:intron 50.0%
TAAATGGACACGTGGCAGCA+GGG + chr4.3:36410501-36410520 None:intergenic 50.0%
TGATATCCAGTAGACCGTGC+AGG - chr4.3:36411684-36411703 MS.gene056638:CDS 50.0%
TGCTCTTCTTCACACCCCTT+GGG - chr4.3:36410456-36410475 MS.gene056638:intron 50.0%
TGGCATTTCGAGCTCAACCT+GGG + chr4.3:36410188-36410207 None:intergenic 50.0%
TGTTATCCAGTAGACCGTGC+AGG - chr4.3:36411399-36411418 MS.gene056638:intron 50.0%
TTGGCATTTCGAGCTCAACC+TGG + chr4.3:36410189-36410208 None:intergenic 50.0%
TTTGGAGATGGAAGTGGGAC+TGG + chr4.3:36410429-36410448 None:intergenic 50.0%
! GGGGAGAGTATGCTGAAATC+AGG + chr4.3:36410167-36410186 None:intergenic 50.0%
! GGGTGTGAAGAAGAGCATAC+TGG + chr4.3:36410453-36410472 None:intergenic 50.0%
AAATGGACACGTGGCAGCAG+GGG + chr4.3:36410500-36410519 None:intergenic 55.0%
CTAAATGGACACGTGGCAGC+AGG + chr4.3:36410502-36410521 None:intergenic 55.0%
GCATTTCGAGCTCAACCTGG+GGG + chr4.3:36410186-36410205 None:intergenic 55.0%
GGCATTTCGAGCTCAACCTG+GGG + chr4.3:36410187-36410206 None:intergenic 55.0%
GATCAGCCTGCACGGTCTAC+TGG + chr4.3:36411408-36411427 None:intergenic 60.0%
GCCCCCCACTGAGATGAGAA+TGG - chr4.3:36410392-36410411 MS.gene056638:intron 60.0%
!! CTCAGTGGGGGGCATTCTCT+TGG + chr4.3:36410385-36410404 None:intergenic 60.0%
ACGTGGCAGCAGGGGAATGG+AGG + chr4.3:36410492-36410511 None:intergenic 65.0%
GACACGTGGCAGCAGGGGAA+TGG + chr4.3:36410495-36410514 None:intergenic 65.0%
TTGTCAAACGCGGCCGCTCC+CGG - chr4.3:36410550-36410569 MS.gene056638:intron 65.0%
ATATTCCCGGGAGCGGCGCC+GGG + chr4.3:36410571-36410590 None:intergenic 70.0%
GATATTCCCGGGAGCGGCGC+CGG + chr4.3:36410572-36410591 None:intergenic 70.0%
! CCGCTCCCGGCGCCGCTCCC+GGG - chr4.3:36410563-36410582 MS.gene056638:intron 90.0%
! GCCGCTCCCGGCGCCGCTCC+CGG - chr4.3:36410562-36410581 MS.gene056638:intron 90.0%
!! CCCGGGAGCGGCGCCGGGAG+CGG + chr4.3:36410566-36410585 None:intergenic 90.0%


Chromosome Type Strat End Strand Name
chr4.3 gene 36409155 36411812 36409155 ID=MS.gene056638
chr4.3 mRNA 36409155 36411812 36409155 ID=MS.gene056638.t1;Parent=MS.gene056638
chr4.3 exon 36411665 36411812 36411665 ID=MS.gene056638.t1.exon1;Parent=MS.gene056638.t1
chr4.3 CDS 36411665 36411812 36411665 ID=cds.MS.gene056638.t1;Parent=MS.gene056638.t1
chr4.3 exon 36411460 36411571 36411460 ID=MS.gene056638.t1.exon2;Parent=MS.gene056638.t1
chr4.3 CDS 36411460 36411571 36411460 ID=cds.MS.gene056638.t1;Parent=MS.gene056638.t1
chr4.3 exon 36411181 36411333 36411181 ID=MS.gene056638.t1.exon3;Parent=MS.gene056638.t1
chr4.3 CDS 36411181 36411333 36411181 ID=cds.MS.gene056638.t1;Parent=MS.gene056638.t1
chr4.3 exon 36409697 36410047 36409697 ID=MS.gene056638.t1.exon4;Parent=MS.gene056638.t1
chr4.3 CDS 36409697 36410047 36409697 ID=cds.MS.gene056638.t1;Parent=MS.gene056638.t1
chr4.3 exon 36409155 36409224 36409155 ID=MS.gene056638.t1.exon5;Parent=MS.gene056638.t1
chr4.3 CDS 36409155 36409224 36409155 ID=cds.MS.gene056638.t1;Parent=MS.gene056638.t1
Gene Sequence

>MS.gene056638

ATGCCAATATACAGGAATTTCACAGCTGTTCATACTGGAACCTCGTTGAAATTTGATTTATCTGCTGACGACAACAATCCAATGTTTTATGCACTGAGCACAGTAGCGATAATTCACCCCCATGACTACCTGCTAACTAAACGTTTAGGTAGGTTTTTAAATAAAGTTATTGTTGTTATTATTATTATTTTTTTTTATTTTAAATTTACTAACACTAACTATTTCATTTGAGTTTATTCAGATCTATTCCACTCACTTTGTGATGGTTATACCGGCTATGAATTTGATTGTGAAGAAGGTTTTCTTGACGATGAGGGTAATGTTAAAGTAGAATTGCAGATTCAGATTCTTGGGTAAGTCCTTATGTATGCATTATGTTGGTCAATATACTCGTAAAATTTTTACCATATAATTAATTATAAGCATTGGGTGTCACTGAATTCCATGCAACTCATTGTATGATTGTTATTAATGCACAGAGAAAATGTCTTCCAGCCTCTCCTTGTAAAGAAGTATCGAGCTGAGCTTCTTTTGGCTACTATGCATGTTGTGAACATAATTTGTTCTCGTTTTTTTAAGAAGACAATAGATGACTTGAAGAGCCTGATTCACAATGAAATTAAGTGGCCAAGGTATTTTTTTACTTTTTTTTTCTACTAGTAAGTTGAAAATGATATTTTATTTATTATTATGGAGTTGACAAAAGAGTCACAAACTTACGTGATATTGTTAATTTAATTAATAGATGTGTATGGTTTTACCATTTGAATTTTAATAATATATGGTGGAACGAGTAAGCATCTCGTCATTAGGAACATATGTTATTCCATGTTTAGCATGTCTTAGTTGATTCGGTTTTTTATTTGTTTTGTTTTTGAAGCAATGTCTTGGTTAATTAGATATTCATCATTTGTTAACCCAAAGGGCATTACGAGATATTCATAATGGCCTTCATGAGTTCAAAATTCAGTCTTGTGAATATCACCCTCTCATTCGAATCTGATGATACCCTGATTTCAGCATACTCTCCCCCAGGTTGAGCTCGAAATGCCAAATAATTGACACAAACAATAGTAGCAAAAAGATATAACAAATTATGGTGGCAACTAGTGATATTTTTTATGTGAACTGTGGGATAAATTCCCTTATAAATACTGCAATGTTAAACAATGGATGGATTGATAATCTCCTTGCAGTAATGAAATTTACAAAGACGATAAACTATCACCAAGAGAATGCCCCCCACTGAGATGAGAATGGTTCTCACTATTCCAGTCCCACTTCCATCTCCAAAACCAGTATGCTCTTCTTCACACCCCTTGGGTCAATCTTTTCCTCCATTCCCCTGCTGCCACGTGTCCATTTAGTTACTCAAATCAATAGCTCATCACTCTGTTGTCAAACGCGGCCGCTCCCGGCGCCGCTCCCGGGAATATCAAATTGTGGAAGGACCAAGTCAATTCCACTGGCACTTCCTTAGAAATAGGAATAATTAATTACAGGATAGGAACAATATAGCTAAGTAAATCAGTTTCAACAGTACAAATGTTGTACAAACGTTGTAGGAGTCTAAGTTTGTATTTGATGCTTTTGTAGGAGTCTATGTTGTACAAATGTTGTGAATTTAAATGTGATATTCTTAATTTATGGGAAATGAAATTTTGAAACCCATGTTTTGTTATTCAACAAAAAAAAAAAACGGGCGTCACACTCCCTCAAGTTTTTTGTTTGCTAATTATCTAACATGATTTTTCAATATTTGCAGATTTTGTACTTTCATGATAGAAAGTGGCAAAAGTTCAATGAACAGAATGATTTGGGAAAAGGAAGATGTAATTAAGGAAGCCTTGGTGCATCAATTTTTTTTAGATGGTGCTGTGACATCTCCTTTGCTAATGGAGATATTATACGATGGTTATGAATCAATAAAGGCTAACAATACTACGGATAAGTTTGTCATATTTGAGGACGAATGGTTTGAGTTGGTGCTTGATGATGATGTGCCATCCCTACTTAAAAGGGTTGTTGATAAAGAGTATAAACCTATATATGAAAGCATTGTCCCACAGTTTGGTTGCATGATTGTGGAAATATTTGTTCTTGACTATCTATTCAGGTACCATATATGATTTATTTATTGACCTGAGTCTTGTTTCTTTATATTAAGTATTCGTGTGATTGTTTAATTTAAAAAATTAGTTAATAGTGAAAGTGTGATACAATAGTGTTGCTAGGCTTTTGGCTTGTTATCCAGTAGACCGTGCAGGCTGATCATATTCTAATTATTTATTTATTTATTTTTGAAGAAAAATGGAGAAGGACTTTACTCGAAGTGAGCTCAATCGAACTAAAAAGAAGTCCGAGAAAAATGTGAAAAAAATGGGAGAAGCAAAAGGTAAACTTGATTTTTGCTGTAAATAGACGGGGTTTTCCTTATTTTGTTAACTATTTGATAGAAACTGTTTGTGGCTGCAGCAAAATTAGTTAATAATAAAAGTGTGATACAATAGTGTTGCTAGGCTTTTGGCTTGATATCCAGTAGACCGTGCAGGCTGATCATATTCTAATTATTTATTTAATGGATGCAGGAACAAAATTGAGAAGAACTTTACTCAAAGTGACTCAATCGAACTGAAAAGGAGTCCGAGAAAAAAGTAA

Protein sequence

>MS.gene056638.t1

MPIYRNFTAVHTGTSLKFDLSADDNNPMFYALSTVAIIHPHDYLLTKRLDLFHSLCDGYTGYEFDCEEGFLDDEGNVKVELQIQILGENVFQPLLVKKYRAELLLATMHVVNIICSRFFKKTIDDLKSLIHNEIKWPRFCTFMIESGKSSMNRMIWEKEDVIKEALVHQFFLDGAVTSPLLMEILYDGYESIKANNTTDKFVIFEDEWFELVLDDDVPSLLKRVVDKEYKPIYESIVPQFGCMIVEIFVLDYLFRNKIEKNFTQSDSIELKRSPRKK