Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76005.t1 | XP_003621585.1 | 98.9 | 438 | 5 | 0 | 1 | 438 | 1 | 438 | 2.20E-250 | 874.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76005.t1 | Q9LFV5 | 82.0 | 378 | 67 | 1 | 61 | 437 | 70 | 447 | 2.3e-187 | 656.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76005.t1 | A2Q633 | 98.9 | 438 | 5 | 0 | 1 | 438 | 1 | 438 | 1.6e-250 | 874.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene058427 | MS.gene76005 | 0.805235 | 1.47E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76005.t1 | MTR_7g017400 | 98.858 | 438 | 5 | 0 | 1 | 438 | 1 | 438 | 0.0 | 900 |
| MS.gene76005.t1 | MTR_3g085160 | 31.471 | 340 | 209 | 13 | 90 | 416 | 42 | 370 | 2.28e-35 | 135 |
| MS.gene76005.t1 | MTR_3g085160 | 31.471 | 340 | 209 | 13 | 90 | 416 | 111 | 439 | 5.71e-35 | 135 |
| MS.gene76005.t1 | MTR_8g028250 | 31.014 | 345 | 199 | 14 | 97 | 413 | 43 | 376 | 7.30e-28 | 114 |
| MS.gene76005.t1 | MTR_4g094748 | 27.778 | 378 | 241 | 10 | 90 | 437 | 55 | 430 | 6.96e-26 | 109 |
| MS.gene76005.t1 | MTR_8g028220 | 27.824 | 363 | 219 | 15 | 72 | 413 | 31 | 371 | 8.57e-23 | 100 |
| MS.gene76005.t1 | MTR_1g033280 | 30.169 | 295 | 174 | 11 | 90 | 366 | 24 | 304 | 8.60e-20 | 90.9 |
| MS.gene76005.t1 | MTR_1g033310 | 26.176 | 340 | 215 | 14 | 83 | 411 | 6 | 320 | 7.80e-18 | 84.7 |
| MS.gene76005.t1 | MTR_1g018140 | 25.210 | 357 | 237 | 9 | 82 | 414 | 5 | 355 | 5.37e-17 | 82.8 |
| MS.gene76005.t1 | MTR_4g011090 | 20.833 | 360 | 239 | 14 | 94 | 419 | 1 | 348 | 2.22e-11 | 65.5 |
| MS.gene76005.t1 | MTR_2g033410 | 21.711 | 304 | 205 | 8 | 96 | 375 | 7 | 301 | 2.72e-11 | 65.1 |
| MS.gene76005.t1 | MTR_1g014700 | 22.762 | 391 | 242 | 13 | 98 | 437 | 22 | 403 | 2.77e-11 | 65.5 |
| MS.gene76005.t1 | MTR_3g007330 | 27.219 | 169 | 112 | 6 | 70 | 231 | 18 | 182 | 4.64e-11 | 64.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76005.t1 | AT5G15710 | 76.871 | 441 | 94 | 3 | 1 | 437 | 11 | 447 | 0.0 | 698 |
| MS.gene76005.t1 | AT5G15710 | 76.871 | 441 | 94 | 3 | 1 | 437 | 11 | 447 | 0.0 | 698 |
| MS.gene76005.t1 | AT1G30950 | 28.612 | 353 | 222 | 9 | 90 | 414 | 42 | 392 | 2.34e-31 | 125 |
| MS.gene76005.t1 | AT1G27340 | 29.210 | 291 | 183 | 10 | 89 | 367 | 111 | 390 | 1.08e-29 | 120 |
| MS.gene76005.t1 | AT3G61590 | 28.099 | 363 | 196 | 19 | 96 | 413 | 41 | 383 | 4.72e-22 | 98.2 |
| MS.gene76005.t1 | AT3G61590 | 28.099 | 363 | 196 | 19 | 96 | 413 | 49 | 391 | 5.95e-22 | 97.8 |
| MS.gene76005.t1 | AT3G61590 | 28.099 | 363 | 196 | 19 | 96 | 413 | 49 | 391 | 5.95e-22 | 97.8 |
| MS.gene76005.t1 | AT3G61590 | 28.099 | 363 | 196 | 19 | 96 | 413 | 77 | 419 | 1.19e-21 | 97.4 |
| MS.gene76005.t1 | AT5G43190 | 27.401 | 354 | 222 | 13 | 83 | 414 | 36 | 376 | 3.01e-14 | 74.7 |
| MS.gene76005.t1 | AT5G49610 | 22.654 | 309 | 206 | 10 | 90 | 375 | 1 | 299 | 9.18e-11 | 63.5 |
Find 98 sgRNAs with CRISPR-Local
Find 127 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATAGGGAAATCTTCTGAATT+AGG | 0.184813 | 7.3:+81009422 | MS.gene76005:CDS |
| CTCTGCAGAGTATAAGAATT+TGG | 0.204348 | 7.3:+81010443 | MS.gene76005:CDS |
| ATCTGGCTGGTTGGGTCATC+TGG | 0.265263 | 7.3:+81009959 | MS.gene76005:CDS |
| CTTGATGGTTACTTGGTTGC+CGG | 0.321807 | 7.3:+81010373 | MS.gene76005:CDS |
| AGATGGCGTATTGTGATTCT+AGG | 0.327846 | 7.3:+81010254 | MS.gene76005:CDS |
| GAGATGGAATTCATTGCTTC+AGG | 0.336339 | 7.3:+81009781 | MS.gene76005:CDS |
| TCAACAAAGGCAACTGATAA+TGG | 0.351016 | 7.3:+81010084 | MS.gene76005:CDS |
| GCTGAGAGATTTGAATGCTT+TGG | 0.354339 | 7.3:+81010547 | MS.gene76005:CDS |
| TACTCTGCAGAGTGCTATAA+AGG | 0.356458 | 7.3:-81010432 | None:intergenic |
| GCTTCTCCTCCAAGGGGAAA+TGG | 0.361590 | 7.3:+81009515 | MS.gene76005:CDS |
| AAATCGTTGGGAACATATTC+CGG | 0.373595 | 7.3:+81010330 | MS.gene76005:CDS |
| ATGACTCAAAGGAAGATAAA+TGG | 0.389639 | 7.3:+81010188 | MS.gene76005:CDS |
| TAGAGAAAATGGATTGTATA+GGG | 0.393610 | 7.3:+81009405 | None:intergenic |
| ATTGGGCGATCTGGCTGGTT+GGG | 0.397143 | 7.3:+81009951 | MS.gene76005:CDS |
| CTTGATCCATTTCCCCTTGG+AGG | 0.397956 | 7.3:-81009521 | None:intergenic |
| GTCGTTACTTGATGGTTACT+TGG | 0.399584 | 7.3:+81010366 | MS.gene76005:CDS |
| CATTGGGCGATCTGGCTGGT+TGG | 0.406460 | 7.3:+81009950 | MS.gene76005:CDS |
| TTGGAAACCCTTTCGCCGCT+TGG | 0.408910 | 7.3:+81010283 | MS.gene76005:CDS |
| TGTTGATTAAAATGCATACT+TGG | 0.412063 | 7.3:-81010067 | None:intergenic |
| TCTGCAGAGTATAAGAATTT+GGG | 0.413504 | 7.3:+81010444 | MS.gene76005:CDS |
| AACTGTAAACAGAACATTGC+GGG | 0.425399 | 7.3:-81009883 | None:intergenic |
| TTAGAGAAAATGGATTGTAT+AGG | 0.428981 | 7.3:+81009404 | None:intergenic |
| TAGGGAAATCTTCTGAATTA+GGG | 0.432644 | 7.3:+81009423 | MS.gene76005:CDS |
| GAGTATAAGAATTTGGGAAT+TGG | 0.434419 | 7.3:+81010450 | MS.gene76005:CDS |
| GAAGAAACACATGCTACATT+TGG | 0.435966 | 7.3:+81009632 | MS.gene76005:CDS |
| TTCAGATGGAGGATAACATA+TGG | 0.436237 | 7.3:+81009675 | MS.gene76005:CDS |
| TTGTGATTCTAGGTTGTACT+TGG | 0.439967 | 7.3:+81010264 | MS.gene76005:CDS |
| TTCCCGCGGTCGTTACTTGA+TGG | 0.443885 | 7.3:+81010358 | MS.gene76005:CDS |
| GTCACTACATATATCATTAG+TGG | 0.448781 | 7.3:-81010143 | None:intergenic |
| GCCGCATTGGGCGATCTGGC+TGG | 0.459159 | 7.3:+81009946 | MS.gene76005:CDS |
| GTAATCCCCTCACTCAAACT+TGG | 0.462294 | 7.3:+81010035 | MS.gene76005:CDS |
| TTCCTTGATCCATTTCCCCT+TGG | 0.464201 | 7.3:-81009524 | None:intergenic |
| CTAGTCCAATGGGTCGAGTC+GGG | 0.468487 | 7.3:+81009549 | MS.gene76005:CDS |
| CACGAGTCCTTCAAGGCAAA+AGG | 0.475886 | 7.3:+81009580 | MS.gene76005:CDS |
| GTTTCTTCATCTAAACCCCT+TGG | 0.480699 | 7.3:-81009617 | None:intergenic |
| ACAGTTTGCCTCTTAAAACT+TGG | 0.492998 | 7.3:+81009900 | MS.gene76005:CDS |
| TTCGTTCGGTTTGTAAGAGA+TGG | 0.495825 | 7.3:+81009765 | MS.gene76005:CDS |
| AAATCTTCTGAATTAGGGTC+TGG | 0.498237 | 7.3:+81009428 | MS.gene76005:CDS |
| CAATCTCTGCTCTTCGAAGA+TGG | 0.499866 | 7.3:+81010237 | MS.gene76005:CDS |
| CAAATAGAAGGCCCTTCCCT+TGG | 0.501474 | 7.3:-81010603 | None:intergenic |
| CGAGGAACACGAGTCCTTCA+AGG | 0.503415 | 7.3:+81009573 | MS.gene76005:CDS |
| CATTCGAGTGTGCCATCACA+TGG | 0.505681 | 7.3:+81009824 | MS.gene76005:CDS |
| TCGTTCATTATTGAGACTGT+CGG | 0.510271 | 7.3:+81010525 | MS.gene76005:CDS |
| CATCAAACCAAGCGGCGAAA+GGG | 0.512136 | 7.3:-81010290 | None:intergenic |
| CAATGGGTCGAGTCGGGTCG+AGG | 0.512891 | 7.3:+81009555 | MS.gene76005:CDS |
| CAGACTAGATATAAATCGTT+GGG | 0.512905 | 7.3:+81010318 | MS.gene76005:CDS |
| AAGATCTGGTCTTGGATTGG+TGG | 0.513036 | 7.3:+81010637 | MS.gene76005:CDS |
| ATCTCATGCAACAAATCCTC+AGG | 0.513038 | 7.3:-81009707 | None:intergenic |
| TCAAGGAATACTAGTCCAAT+GGG | 0.522157 | 7.3:+81009539 | MS.gene76005:CDS |
| TCATCAAACCAAGCGGCGAA+AGG | 0.525618 | 7.3:-81010291 | None:intergenic |
| CTCGACCCGACTCGACCCAT+TGG | 0.526757 | 7.3:-81009554 | None:intergenic |
| CTCCAAGGGGAAATGGATCA+AGG | 0.529388 | 7.3:+81009522 | MS.gene76005:CDS |
| CATCTTCGAAGAGCAGAGAT+TGG | 0.531356 | 7.3:-81010236 | None:intergenic |
| TTCCTCCAAGTTTGAGTGAG+GGG | 0.534252 | 7.3:-81010040 | None:intergenic |
| TTAGGGTCTGGTGTTAGTAT+TGG | 0.537645 | 7.3:+81009440 | MS.gene76005:CDS |
| AACGACCGCGGGAACTTAGC+CGG | 0.537699 | 7.3:-81010349 | None:intergenic |
| TGGCTGGTTGGGTCATCTGG+TGG | 0.544137 | 7.3:+81009962 | MS.gene76005:CDS |
| ATCCCCTCACTCAAACTTGG+AGG | 0.546705 | 7.3:+81010038 | MS.gene76005:CDS |
| GATAATGGTTGTTGATCGAT+CGG | 0.546867 | 7.3:+81010099 | MS.gene76005:CDS |
| AAGCTTGTTTCTATGAGCCA+AGG | 0.550821 | 7.3:+81010686 | MS.gene76005:CDS |
| TCAGATGGAGGATAACATAT+GGG | 0.551921 | 7.3:+81009676 | MS.gene76005:CDS |
| GTCTGTCCATCAGACTATGC+CGG | 0.552490 | 7.3:+81010210 | MS.gene76005:CDS |
| GTATACAAGCTTCTCCTCCA+AGG | 0.552869 | 7.3:+81009507 | MS.gene76005:CDS |
| AGATCTGGTCTTGGATTGGT+GGG | 0.553005 | 7.3:+81010638 | MS.gene76005:CDS |
| ACAGACTAGATATAAATCGT+TGG | 0.556572 | 7.3:+81010317 | MS.gene76005:CDS |
| TGGAAGCCGGCATAGTCTGA+TGG | 0.561952 | 7.3:-81010216 | None:intergenic |
| ATCAAGGAATACTAGTCCAA+TGG | 0.562043 | 7.3:+81009538 | MS.gene76005:CDS |
| ACTAGTCCAATGGGTCGAGT+CGG | 0.562994 | 7.3:+81009548 | MS.gene76005:CDS |
| TTTGAGTCATAAATTTCAGT+CGG | 0.563889 | 7.3:-81010175 | None:intergenic |
| TGCTTCACATCTTATAACCA+AGG | 0.565654 | 7.3:+81010586 | MS.gene76005:CDS |
| TATACAAGCTTCTCCTCCAA+GGG | 0.568208 | 7.3:+81009508 | MS.gene76005:CDS |
| AATAATGAACGAAAATACCT+TGG | 0.570508 | 7.3:-81010514 | None:intergenic |
| GACTGAAATTTATGACTCAA+AGG | 0.574397 | 7.3:+81010177 | MS.gene76005:CDS |
| AATGAACGAAAATACCTTGG+CGG | 0.574866 | 7.3:-81010511 | None:intergenic |
| GGTTGTTAAGACTAAACCAA+GGG | 0.578010 | 7.3:+81009601 | MS.gene76005:CDS |
| CACATCTTATAACCAAGGGA+AGG | 0.586750 | 7.3:+81010591 | MS.gene76005:CDS |
| ATTTCCTCCAAGTTTGAGTG+AGG | 0.595703 | 7.3:-81010042 | None:intergenic |
| TAGATAGAAGCATCAAACCT+TGG | 0.596404 | 7.3:-81010703 | None:intergenic |
| AACCATCAAGTAACGACCGC+GGG | 0.601882 | 7.3:-81010360 | None:intergenic |
| GCTTCACATCTTATAACCAA+GGG | 0.605187 | 7.3:+81010587 | MS.gene76005:CDS |
| AGTTCATGCTGATATTCAGA+TGG | 0.607798 | 7.3:+81009661 | MS.gene76005:CDS |
| TTTCCTCCAAGTTTGAGTGA+GGG | 0.609371 | 7.3:-81010041 | None:intergenic |
| GAAGAGCAGAGATTGGAAGC+CGG | 0.628698 | 7.3:-81010229 | None:intergenic |
| AGAACACAAGGTCCATGTGA+TGG | 0.635856 | 7.3:-81009836 | None:intergenic |
| TCATGCTGATATTCAGATGG+AGG | 0.638526 | 7.3:+81009664 | MS.gene76005:CDS |
| ACATCTTATAACCAAGGGAA+GGG | 0.641003 | 7.3:+81010592 | MS.gene76005:CDS |
| TGGTTGCCGGTACTCAGAAG+CGG | 0.650052 | 7.3:+81010386 | MS.gene76005:CDS |
| AGATCAGTAGGATGCCGCCA+AGG | 0.663629 | 7.3:+81010497 | MS.gene76005:CDS |
| TTACAGAAACTAAGAACACA+AGG | 0.666240 | 7.3:-81009848 | None:intergenic |
| CATATGGGCTATGTTGCCTG+AGG | 0.667267 | 7.3:+81009691 | MS.gene76005:CDS |
| ACCAGCCAGATCGCCCAATG+CGG | 0.679100 | 7.3:-81009947 | None:intergenic |
| AGGTTGTTAAGACTAAACCA+AGG | 0.680360 | 7.3:+81009600 | MS.gene76005:CDS |
| CTGTACATCATCAAACCAAG+CGG | 0.696757 | 7.3:-81010298 | None:intergenic |
| ATATTCCGGCTAAGTTCCCG+CGG | 0.702835 | 7.3:+81010344 | MS.gene76005:CDS |
| GTTGTTAAGACTAAACCAAG+GGG | 0.704700 | 7.3:+81009602 | MS.gene76005:CDS |
| ATACAAGCTTCTCCTCCAAG+GGG | 0.713925 | 7.3:+81009509 | MS.gene76005:CDS |
| TAACCATCAAGTAACGACCG+CGG | 0.740683 | 7.3:-81010361 | None:intergenic |
| AAACTGTAAACAGAACATTG+CGG | 0.767534 | 7.3:-81009884 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | AATAATGAACGAAAATACCT+TGG | - | chr7.3:81010517-81010536 | None:intergenic | 25.0% |
| ! | TTTGAGTCATAAATTTCAGT+CGG | - | chr7.3:81010178-81010197 | None:intergenic | 25.0% |
| !! | TGTTGATTAAAATGCATACT+TGG | - | chr7.3:81010070-81010089 | None:intergenic | 25.0% |
| !! | TTTTATCGACATCAAATAGA+AGG | - | chr7.3:81010618-81010637 | None:intergenic | 25.0% |
| !!! | ATTCTATACCAAGTTTTAAG+AGG | - | chr7.3:81009911-81009930 | None:intergenic | 25.0% |
| !!! | GTATGCATTTTAATCAACAA+AGG | + | chr7.3:81010071-81010090 | MS.gene76005:CDS | 25.0% |
| AAACTGTAAACAGAACATTG+CGG | - | chr7.3:81009887-81009906 | None:intergenic | 30.0% | |
| ACAGACTAGATATAAATCGT+TGG | + | chr7.3:81010317-81010336 | MS.gene76005:CDS | 30.0% | |
| ATAGGGAAATCTTCTGAATT+AGG | + | chr7.3:81009422-81009441 | MS.gene76005:CDS | 30.0% | |
| ATGACTCAAAGGAAGATAAA+TGG | + | chr7.3:81010188-81010207 | MS.gene76005:CDS | 30.0% | |
| CAGACTAGATATAAATCGTT+GGG | + | chr7.3:81010318-81010337 | MS.gene76005:CDS | 30.0% | |
| GACTGAAATTTATGACTCAA+AGG | + | chr7.3:81010177-81010196 | MS.gene76005:CDS | 30.0% | |
| GAGTATAAGAATTTGGGAAT+TGG | + | chr7.3:81010450-81010469 | MS.gene76005:CDS | 30.0% | |
| GTCACTACATATATCATTAG+TGG | - | chr7.3:81010146-81010165 | None:intergenic | 30.0% | |
| TAGGGAAATCTTCTGAATTA+GGG | + | chr7.3:81009423-81009442 | MS.gene76005:CDS | 30.0% | |
| TCTGCAGAGTATAAGAATTT+GGG | + | chr7.3:81010444-81010463 | MS.gene76005:CDS | 30.0% | |
| TTACAGAAACTAAGAACACA+AGG | - | chr7.3:81009851-81009870 | None:intergenic | 30.0% | |
| TTGATGTCGATAAAAAGATC+TGG | + | chr7.3:81010623-81010642 | MS.gene76005:CDS | 30.0% | |
| ! | GCAGTAGAAAATGTAGTTTT+AGG | + | chr7.3:81009467-81009486 | MS.gene76005:CDS | 30.0% |
| !!! | GTAGAAAATGTAGTTTTAGG+TGG | + | chr7.3:81009470-81009489 | MS.gene76005:CDS | 30.0% |
| AAATCGTTGGGAACATATTC+CGG | + | chr7.3:81010330-81010349 | MS.gene76005:CDS | 35.0% | |
| AAATCTTCTGAATTAGGGTC+TGG | + | chr7.3:81009428-81009447 | MS.gene76005:CDS | 35.0% | |
| AACTGTAAACAGAACATTGC+GGG | - | chr7.3:81009886-81009905 | None:intergenic | 35.0% | |
| AATGAACGAAAATACCTTGG+CGG | - | chr7.3:81010514-81010533 | None:intergenic | 35.0% | |
| ACAGTTTGCCTCTTAAAACT+TGG | + | chr7.3:81009900-81009919 | MS.gene76005:CDS | 35.0% | |
| ACATCTTATAACCAAGGGAA+GGG | + | chr7.3:81010592-81010611 | MS.gene76005:CDS | 35.0% | |
| AGGTTGTTAAGACTAAACCA+AGG | + | chr7.3:81009600-81009619 | MS.gene76005:CDS | 35.0% | |
| AGTTCATGCTGATATTCAGA+TGG | + | chr7.3:81009661-81009680 | MS.gene76005:CDS | 35.0% | |
| ATCAAGGAATACTAGTCCAA+TGG | + | chr7.3:81009538-81009557 | MS.gene76005:CDS | 35.0% | |
| CGAAGCCGAAAAATTAGAAA+CGG | - | chr7.3:81009749-81009768 | None:intergenic | 35.0% | |
| CTCTGCAGAGTATAAGAATT+TGG | + | chr7.3:81010443-81010462 | MS.gene76005:CDS | 35.0% | |
| GAAGAAACACATGCTACATT+TGG | + | chr7.3:81009632-81009651 | MS.gene76005:CDS | 35.0% | |
| GCTTCACATCTTATAACCAA+GGG | + | chr7.3:81010587-81010606 | MS.gene76005:CDS | 35.0% | |
| GGTTGTTAAGACTAAACCAA+GGG | + | chr7.3:81009601-81009620 | MS.gene76005:CDS | 35.0% | |
| GTTGTTAAGACTAAACCAAG+GGG | + | chr7.3:81009602-81009621 | MS.gene76005:CDS | 35.0% | |
| TCAACAAAGGCAACTGATAA+TGG | + | chr7.3:81010084-81010103 | MS.gene76005:CDS | 35.0% | |
| TCAAGGAATACTAGTCCAAT+GGG | + | chr7.3:81009539-81009558 | MS.gene76005:CDS | 35.0% | |
| TCAGATGGAGGATAACATAT+GGG | + | chr7.3:81009676-81009695 | MS.gene76005:CDS | 35.0% | |
| TCGATAAAAAGATCTGGTCT+TGG | + | chr7.3:81010629-81010648 | MS.gene76005:CDS | 35.0% | |
| TCGTTCATTATTGAGACTGT+CGG | + | chr7.3:81010525-81010544 | MS.gene76005:CDS | 35.0% | |
| TGCTTCACATCTTATAACCA+AGG | + | chr7.3:81010586-81010605 | MS.gene76005:CDS | 35.0% | |
| TTCAGATGGAGGATAACATA+TGG | + | chr7.3:81009675-81009694 | MS.gene76005:CDS | 35.0% | |
| TTGTGATTCTAGGTTGTACT+TGG | + | chr7.3:81010264-81010283 | MS.gene76005:CDS | 35.0% | |
| ! | GATAATGGTTGTTGATCGAT+CGG | + | chr7.3:81010099-81010118 | MS.gene76005:CDS | 35.0% |
| ! | TTAACAACCTTTTGCCTTGA+AGG | - | chr7.3:81009590-81009609 | None:intergenic | 35.0% |
| ! | TTCCGCCGTTTCTAATTTTT+CGG | + | chr7.3:81009741-81009760 | MS.gene76005:CDS | 35.0% |
| ! | TTTCACATTTTTGCCGCATT+GGG | + | chr7.3:81009934-81009953 | MS.gene76005:CDS | 35.0% |
| !! | AAAAAGATCTGGTCTTGGAT+TGG | + | chr7.3:81010634-81010653 | MS.gene76005:CDS | 35.0% |
| !! | TAGATAGAAGCATCAAACCT+TGG | - | chr7.3:81010706-81010725 | None:intergenic | 35.0% |
| !! | TCTAATTTTTCGGCTTCGTT+CGG | + | chr7.3:81009751-81009770 | MS.gene76005:CDS | 35.0% |
| AGATGGCGTATTGTGATTCT+AGG | + | chr7.3:81010254-81010273 | MS.gene76005:CDS | 40.0% | |
| AGCCGAAAAATTAGAAACGG+CGG | - | chr7.3:81009746-81009765 | None:intergenic | 40.0% | |
| ATCTCATGCAACAAATCCTC+AGG | - | chr7.3:81009710-81009729 | None:intergenic | 40.0% | |
| ATTTCCTCCAAGTTTGAGTG+AGG | - | chr7.3:81010045-81010064 | None:intergenic | 40.0% | |
| CACATCTTATAACCAAGGGA+AGG | + | chr7.3:81010591-81010610 | MS.gene76005:CDS | 40.0% | |
| CTGTACATCATCAAACCAAG+CGG | - | chr7.3:81010301-81010320 | None:intergenic | 40.0% | |
| GAGATGGAATTCATTGCTTC+AGG | + | chr7.3:81009781-81009800 | MS.gene76005:CDS | 40.0% | |
| GCTGAGAGATTTGAATGCTT+TGG | + | chr7.3:81010547-81010566 | MS.gene76005:CDS | 40.0% | |
| GTTTCTTCATCTAAACCCCT+TGG | - | chr7.3:81009620-81009639 | None:intergenic | 40.0% | |
| TATACAAGCTTCTCCTCCAA+GGG | + | chr7.3:81009508-81009527 | MS.gene76005:CDS | 40.0% | |
| TCATGCTGATATTCAGATGG+AGG | + | chr7.3:81009664-81009683 | MS.gene76005:CDS | 40.0% | |
| TTTCCTCCAAGTTTGAGTGA+GGG | - | chr7.3:81010044-81010063 | None:intergenic | 40.0% | |
| ! | ATCATGCCAAGATTTTGTGG+GGG | + | chr7.3:81010473-81010492 | MS.gene76005:CDS | 40.0% |
| ! | CTTTTTCTTGTTGGGAGGAT+TGG | + | chr7.3:81010409-81010428 | MS.gene76005:CDS | 40.0% |
| ! | GATCATGCCAAGATTTTGTG+GGG | + | chr7.3:81010472-81010491 | MS.gene76005:CDS | 40.0% |
| ! | GGATCATGCCAAGATTTTGT+GGG | + | chr7.3:81010471-81010490 | MS.gene76005:CDS | 40.0% |
| ! | GTCGTTACTTGATGGTTACT+TGG | + | chr7.3:81010366-81010385 | MS.gene76005:CDS | 40.0% |
| ! | GTTTCACATTTTTGCCGCAT+TGG | + | chr7.3:81009933-81009952 | MS.gene76005:CDS | 40.0% |
| ! | TACTCTGCAGAGTGCTATAA+AGG | - | chr7.3:81010435-81010454 | None:intergenic | 40.0% |
| ! | TGGATCATGCCAAGATTTTG+TGG | + | chr7.3:81010470-81010489 | MS.gene76005:CDS | 40.0% |
| ! | TTAGGGTCTGGTGTTAGTAT+TGG | + | chr7.3:81009440-81009459 | MS.gene76005:CDS | 40.0% |
| ! | TTCGTTCGGTTTGTAAGAGA+TGG | + | chr7.3:81009765-81009784 | MS.gene76005:CDS | 40.0% |
| !! | AAGCTTGTTTCTATGAGCCA+AGG | + | chr7.3:81010686-81010705 | MS.gene76005:CDS | 40.0% |
| !! | AGAAGCGGCTTTTTCTTGTT+GGG | + | chr7.3:81010401-81010420 | MS.gene76005:CDS | 40.0% |
| !!! | GTGGTCTTGTTTGCTTTTCT+GGG | + | chr7.3:81009981-81010000 | MS.gene76005:CDS | 40.0% |
| AAAAAGCCGCTTCTGAGTAC+CGG | - | chr7.3:81010395-81010414 | None:intergenic | 45.0% | |
| AGAACACAAGGTCCATGTGA+TGG | - | chr7.3:81009839-81009858 | None:intergenic | 45.0% | |
| ATACAAGCTTCTCCTCCAAG+GGG | + | chr7.3:81009509-81009528 | MS.gene76005:CDS | 45.0% | |
| CAATCTCTGCTCTTCGAAGA+TGG | + | chr7.3:81010237-81010256 | MS.gene76005:CDS | 45.0% | |
| CATCTTCGAAGAGCAGAGAT+TGG | - | chr7.3:81010239-81010258 | None:intergenic | 45.0% | |
| GTAATCCCCTCACTCAAACT+TGG | + | chr7.3:81010035-81010054 | MS.gene76005:CDS | 45.0% | |
| GTATACAAGCTTCTCCTCCA+AGG | + | chr7.3:81009507-81009526 | MS.gene76005:CDS | 45.0% | |
| TAACCATCAAGTAACGACCG+CGG | - | chr7.3:81010364-81010383 | None:intergenic | 45.0% | |
| TTCCTCCAAGTTTGAGTGAG+GGG | - | chr7.3:81010043-81010062 | None:intergenic | 45.0% | |
| TTCCTTGATCCATTTCCCCT+TGG | - | chr7.3:81009527-81009546 | None:intergenic | 45.0% | |
| ! | CTTGATGGTTACTTGGTTGC+CGG | + | chr7.3:81010373-81010392 | MS.gene76005:CDS | 45.0% |
| ! | TCATGCCAAGATTTTGTGGG+GGG | + | chr7.3:81010474-81010493 | MS.gene76005:CDS | 45.0% |
| !! | AAGATCTGGTCTTGGATTGG+TGG | + | chr7.3:81010637-81010656 | MS.gene76005:CDS | 45.0% |
| !! | AGATCTGGTCTTGGATTGGT+GGG | + | chr7.3:81010638-81010657 | MS.gene76005:CDS | 45.0% |
| !! | CAGAAGCGGCTTTTTCTTGT+TGG | + | chr7.3:81010400-81010419 | MS.gene76005:CDS | 45.0% |
| !!! | GGTGGTCTTGTTTGCTTTTC+TGG | + | chr7.3:81009980-81009999 | MS.gene76005:CDS | 45.0% |
| AACCATCAAGTAACGACCGC+GGG | - | chr7.3:81010363-81010382 | None:intergenic | 50.0% | |
| ACTAGTCCAATGGGTCGAGT+CGG | + | chr7.3:81009548-81009567 | MS.gene76005:CDS | 50.0% | |
| ATATTCCGGCTAAGTTCCCG+CGG | + | chr7.3:81010344-81010363 | MS.gene76005:CDS | 50.0% | |
| ATCCCCTCACTCAAACTTGG+AGG | + | chr7.3:81010038-81010057 | MS.gene76005:CDS | 50.0% | |
| CAAATAGAAGGCCCTTCCCT+TGG | - | chr7.3:81010606-81010625 | None:intergenic | 50.0% | |
| CACGAGTCCTTCAAGGCAAA+AGG | + | chr7.3:81009580-81009599 | MS.gene76005:CDS | 50.0% | |
| CATCAAACCAAGCGGCGAAA+GGG | - | chr7.3:81010293-81010312 | None:intergenic | 50.0% | |
| CATTCGAGTGTGCCATCACA+TGG | + | chr7.3:81009824-81009843 | MS.gene76005:CDS | 50.0% | |
| CTCCAAGGGGAAATGGATCA+AGG | + | chr7.3:81009522-81009541 | MS.gene76005:CDS | 50.0% | |
| CTTGATCCATTTCCCCTTGG+AGG | - | chr7.3:81009524-81009543 | None:intergenic | 50.0% | |
| GAAGAGCAGAGATTGGAAGC+CGG | - | chr7.3:81010232-81010251 | None:intergenic | 50.0% | |
| GATCTCCCCCCACAAAATCT+TGG | - | chr7.3:81010482-81010501 | None:intergenic | 50.0% | |
| GTCTGTCCATCAGACTATGC+CGG | + | chr7.3:81010210-81010229 | MS.gene76005:CDS | 50.0% | |
| TCATCAAACCAAGCGGCGAA+AGG | - | chr7.3:81010294-81010313 | None:intergenic | 50.0% | |
| ! | CATATGGGCTATGTTGCCTG+AGG | + | chr7.3:81009691-81009710 | MS.gene76005:CDS | 50.0% |
| ! | TTTTGTGGGGGGAGATCAGT+AGG | + | chr7.3:81010485-81010504 | MS.gene76005:CDS | 50.0% |
| !! | AGCGGCTTTTTCTTGTTGGG+AGG | + | chr7.3:81010404-81010423 | MS.gene76005:CDS | 50.0% |
| !! | GTTTGCTTTTCTGGGTGCGA+AGG | + | chr7.3:81009989-81010008 | MS.gene76005:CDS | 50.0% |
| AGATCAGTAGGATGCCGCCA+AGG | + | chr7.3:81010497-81010516 | MS.gene76005:CDS | 55.0% | |
| CGAGGAACACGAGTCCTTCA+AGG | + | chr7.3:81009573-81009592 | MS.gene76005:CDS | 55.0% | |
| CTAGTCCAATGGGTCGAGTC+GGG | + | chr7.3:81009549-81009568 | MS.gene76005:CDS | 55.0% | |
| GCTTCTCCTCCAAGGGGAAA+TGG | + | chr7.3:81009515-81009534 | MS.gene76005:CDS | 55.0% | |
| TGGAAGCCGGCATAGTCTGA+TGG | - | chr7.3:81010219-81010238 | None:intergenic | 55.0% | |
| TGGTTGCCGGTACTCAGAAG+CGG | + | chr7.3:81010386-81010405 | MS.gene76005:CDS | 55.0% | |
| TTCCCGCGGTCGTTACTTGA+TGG | + | chr7.3:81010358-81010377 | MS.gene76005:CDS | 55.0% | |
| TTGGAAACCCTTTCGCCGCT+TGG | + | chr7.3:81010283-81010302 | MS.gene76005:CDS | 55.0% | |
| ! | ATCTGGCTGGTTGGGTCATC+TGG | + | chr7.3:81009959-81009978 | MS.gene76005:CDS | 55.0% |
| ! | ATTGGGCGATCTGGCTGGTT+GGG | + | chr7.3:81009951-81009970 | MS.gene76005:CDS | 55.0% |
| ! | TTTTGCCGCATTGGGCGATC+TGG | + | chr7.3:81009942-81009961 | MS.gene76005:CDS | 55.0% |
| AACGACCGCGGGAACTTAGC+CGG | - | chr7.3:81010352-81010371 | None:intergenic | 60.0% | |
| ACCAGCCAGATCGCCCAATG+CGG | - | chr7.3:81009950-81009969 | None:intergenic | 60.0% | |
| CATTGGGCGATCTGGCTGGT+TGG | + | chr7.3:81009950-81009969 | MS.gene76005:CDS | 60.0% | |
| ! | TGGCTGGTTGGGTCATCTGG+TGG | + | chr7.3:81009962-81009981 | MS.gene76005:CDS | 60.0% |
| CAATGGGTCGAGTCGGGTCG+AGG | + | chr7.3:81009555-81009574 | MS.gene76005:CDS | 65.0% | |
| ! | CTCGACCCGACTCGACCCAT+TGG | - | chr7.3:81009557-81009576 | None:intergenic | 65.0% |
| GCCGCATTGGGCGATCTGGC+TGG | + | chr7.3:81009946-81009965 | MS.gene76005:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 81009413 | 81010729 | 81009413 | ID=MS.gene76005 |
| chr7.3 | mRNA | 81009413 | 81010729 | 81009413 | ID=MS.gene76005.t1;Parent=MS.gene76005 |
| chr7.3 | exon | 81009413 | 81010729 | 81009413 | ID=MS.gene76005.t1.exon1;Parent=MS.gene76005.t1 |
| chr7.3 | CDS | 81009413 | 81010729 | 81009413 | ID=cds.MS.gene76005.t1;Parent=MS.gene76005.t1 |
| Gene Sequence |
| Protein sequence |
