AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene76062

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene76062.t1 MTR_8g011350 70.404 223 33 3 46 236 211 432 4.11e-101 303
MS.gene76062.t1 MTR_8g011350 86.047 43 6 0 4 46 92 134 3.75e-17 80.9
MS.gene76062.t1 MTR_8g011350 70.404 223 33 3 46 236 211 432 4.46e-101 303
MS.gene76062.t1 MTR_8g011350 86.047 43 6 0 4 46 92 134 3.99e-17 80.9
MS.gene76062.t1 MTR_7g051430 53.216 171 61 2 46 198 210 379 2.85e-55 183
MS.gene76062.t1 MTR_7g051430 67.442 43 14 0 4 46 91 133 4.21e-12 65.9
MS.gene76062.t1 MTR_7g051430 45.333 225 87 4 46 236 210 432 4.68e-55 184
MS.gene76062.t1 MTR_7g051430 67.442 43 14 0 4 46 91 133 5.39e-12 65.9
MS.gene76062.t1 MTR_7g080180 46.667 195 76 5 46 215 210 401 1.02e-48 167
MS.gene76062.t1 MTR_7g080180 78.947 38 8 0 9 46 96 133 2.42e-13 69.7
MS.gene76062.t1 MTR_7g080180 46.667 195 76 5 46 215 210 401 1.62e-48 167
MS.gene76062.t1 MTR_7g080180 78.947 38 8 0 9 46 96 133 2.39e-13 69.7
MS.gene76062.t1 MTR_4g021535 30.942 223 101 8 9 198 103 305 2.10e-20 90.1
MS.gene76062.t1 MTR_2g018590 31.056 161 83 6 46 198 214 354 6.45e-15 74.3
MS.gene76062.t1 MTR_4g021520 32.258 155 85 5 46 198 220 356 2.06e-14 72.8
MS.gene76062.t1 MTR_4g021520 32.258 155 85 5 46 198 220 356 2.66e-14 72.4
MS.gene76062.t1 MTR_0024s0320 85.714 35 5 0 46 80 39 73 7.74e-14 67.8
MS.gene76062.t1 MTR_2g018630 30.323 155 85 6 46 198 112 245 9.32e-14 70.5
MS.gene76062.t1 MTR_2g018630 30.323 155 85 6 46 198 217 350 1.58e-13 70.1
MS.gene76062.t1 MTR_2g018600 27.500 160 90 5 46 198 214 354 3.22e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene76062.t1 AT4G12910 53.659 164 58 2 46 193 215 376 9.84e-53 177
MS.gene76062.t1 AT4G12910 78.947 38 8 0 9 46 101 138 1.49e-12 67.4
MS.gene76062.t1 AT4G12910 53.659 164 58 2 46 193 215 376 1.57e-52 178
MS.gene76062.t1 AT4G12910 78.947 38 8 0 9 46 101 138 1.54e-12 67.4
MS.gene76062.t1 AT3G25420 51.190 168 60 3 46 193 208 373 2.08e-48 167
MS.gene76062.t1 AT2G22920 40.860 93 53 1 46 136 26 118 2.06e-15 74.3
MS.gene76062.t1 AT2G22920 40.860 93 53 1 46 136 205 297 4.87e-15 73.9
MS.gene76062.t1 AT2G22920 40.860 93 53 1 46 136 205 297 5.48e-15 74.7
MS.gene76062.t1 AT2G22920 40.860 93 53 1 46 136 205 297 7.71e-15 73.9
MS.gene76062.t1 AT5G09640 34.868 152 74 5 46 189 207 341 2.15e-14 72.8
MS.gene76062.t1 AT1G73270 38.889 90 53 1 46 133 213 302 5.41e-13 68.6
MS.gene76062.t1 AT1G73270 38.889 90 53 1 46 133 213 302 5.67e-13 68.6
MS.gene76062.t1 AT2G22980 38.889 90 53 1 46 133 84 173 1.35e-12 66.6
MS.gene76062.t1 AT2G22980 38.889 90 53 1 46 133 201 290 1.96e-12 67.0
MS.gene76062.t1 AT2G22980 38.889 90 53 1 46 133 201 290 2.05e-12 67.0
MS.gene76062.t1 AT2G22980 38.889 90 53 1 46 133 201 290 2.34e-12 66.6
MS.gene76062.t1 AT2G22980 38.889 90 53 1 46 133 203 292 2.49e-12 66.2
MS.gene76062.t1 AT3G12220 28.125 192 112 7 46 227 207 382 4.17e-12 65.9
MS.gene76062.t1 AT3G12220 28.125 192 112 7 46 227 177 352 4.92e-12 65.9
MS.gene76062.t1 AT2G22970 42.105 76 41 2 46 119 205 279 2.11e-11 63.9
MS.gene76062.t1 AT2G22970 42.105 76 41 2 46 119 205 279 2.37e-11 63.5
MS.gene76062.t1 AT2G22970 42.105 76 41 2 46 119 205 279 2.47e-11 63.9
MS.gene76062.t1 AT2G22970 42.105 76 41 2 46 119 205 279 3.63e-11 62.8
MS.gene76062.t1 AT2G22990 38.158 76 45 1 46 119 88 163 6.19e-11 62.0
MS.gene76062.t1 AT2G23000 28.758 153 76 4 46 198 204 323 6.42e-11 62.4
MS.gene76062.t1 AT2G23000 28.758 153 76 4 46 198 204 323 6.42e-11 62.4
MS.gene76062.t1 AT1G73300 35.165 91 57 1 46 134 213 303 7.35e-11 62.4
MS.gene76062.t1 AT1G73300 35.165 91 57 1 46 134 213 303 7.35e-11 62.4
MS.gene76062.t1 AT2G22990 38.158 76 45 1 46 119 88 163 7.47e-11 62.0
MS.gene76062.t1 AT3G12203 26.064 188 118 6 46 226 152 325 9.48e-11 62.0

Find 61 sgRNAs with CRISPR-Local

Find 135 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGGAATATTCAGATAGTTTA+TGG 0.142941 5.2:+70775135 MS.gene76062:intron
TTCAATTGATTTAGCAGAAT+TGG 0.262392 5.2:-70774738 None:intergenic
CCGTCTCGTTTCCGTGAGTT+AGG 0.274743 5.2:+70774080 MS.gene76062:CDS
AGATTATCACATCCTATATT+AGG 0.278941 5.2:+70774054 MS.gene76062:CDS
ACTTTGCCTTTCAACCAATT+TGG 0.281351 5.2:-70774822 None:intergenic
CATACCTTGGTCCAGCTATA+TGG 0.285880 5.2:-70773178 None:intergenic
CATCTCTCACAGGTGCTCTA+AGG 0.317256 5.2:-70774157 None:intergenic
TGGCAATTGATGATTTCTTC+AGG 0.362023 5.2:+70773097 MS.gene76062:CDS
CATCACTTCATCACCAACTT+TGG 0.376737 5.2:-70774783 None:intergenic
TATCTCAGATGAATTGTTTG+AGG 0.408758 5.2:+70773696 MS.gene76062:CDS
AGAGTCTAAATATATAATAC+TGG 0.418253 5.2:-70773587 None:intergenic
ATCTCTCACAGGTGCTCTAA+GGG 0.423846 5.2:-70774156 None:intergenic
TGTTCCATTTGTACATGGGA+TGG 0.425923 5.2:+70773669 MS.gene76062:CDS
GAAGTCACTTGAGGCCAAAT+TGG 0.431505 5.2:+70774808 MS.gene76062:CDS
TTTGAAGCAGCAAAGACAAA+TGG 0.443536 5.2:+70773130 MS.gene76062:CDS
GCTCTTGTTCCATTTGTACA+TGG 0.446060 5.2:+70773664 MS.gene76062:CDS
ACGAGACGGTAACCTAATAT+AGG 0.447676 5.2:-70774066 None:intergenic
TGCGTCCATCCTTCACCCAT+GGG 0.448622 5.2:-70775211 None:intergenic
GTTCCATTTGTACATGGGAT+GGG 0.456629 5.2:+70773670 MS.gene76062:CDS
TTGCGTCCATCCTTCACCCA+TGG 0.460518 5.2:-70775212 None:intergenic
TTCTGCTAAATCAATTGAAA+AGG 0.460788 5.2:+70774742 MS.gene76062:CDS
TCTCCTGCTGGTTACATAGT+TGG 0.465774 5.2:+70773607 MS.gene76062:CDS
TGGGGTTCTGCTTTCCCCAT+GGG 0.471411 5.2:+70775196 MS.gene76062:CDS
AGACCCATCCCATGTACAAA+TGG 0.478452 5.2:-70773673 None:intergenic
TCTGCTTTCCCCATGGGTGA+AGG 0.479395 5.2:+70775202 MS.gene76062:CDS
GATTGAGGTGCAGAGTTGGC+AGG 0.485652 5.2:-70773156 None:intergenic
GGTTGAACAATGAAGAAGTC+AGG 0.487179 5.2:+70774422 MS.gene76062:CDS
GTGGGGTTCTGCTTTCCCCA+TGG 0.488420 5.2:+70775195 MS.gene76062:CDS
GCCTCTGTGCCGTGGTAGCA+TGG 0.493000 5.2:-70774026 None:intergenic
TTTGCTGCTTCAAAATTGAA+AGG 0.501124 5.2:-70773121 None:intergenic
AAAGAATGTTCGGTCGTGCT+TGG 0.503362 5.2:+70774132 MS.gene76062:CDS
TTGAGGCCAAATTGGTTGAA+AGG 0.513337 5.2:+70774816 MS.gene76062:CDS
TGCACCTCAATCCATATAGC+TGG 0.517012 5.2:+70773167 MS.gene76062:CDS
AGGTTAACCGCGAGTGTGAT+GGG 0.518035 5.2:+70773831 MS.gene76062:CDS
GCTGGTTACATAGTTGGAAA+TGG 0.524879 5.2:+70773613 MS.gene76062:CDS
CTTTCCCCATGGGTGAAGGA+TGG 0.525369 5.2:+70775206 MS.gene76062:CDS
GTTACAGATGAACAAATTGA+TGG 0.533753 5.2:+70773637 MS.gene76062:CDS
GAGGTTAACCGCGAGTGTGA+TGG 0.533915 5.2:+70773830 MS.gene76062:CDS
CCTGTGAGGAAAAGAATGTT+CGG 0.536839 5.2:+70774122 MS.gene76062:CDS
AAAGCATTAAAAGCCAAAGT+TGG 0.538383 5.2:+70774770 MS.gene76062:CDS
ATATATTTAGACTCTCCTGC+TGG 0.546816 5.2:+70773595 MS.gene76062:CDS
TATGGATTGAGGTGCAGAGT+TGG 0.550426 5.2:-70773160 None:intergenic
CTCTTGTTCCATTTGTACAT+GGG 0.559485 5.2:+70773665 MS.gene76062:CDS
TTTCAGTCTCACCTAACTCA+CGG 0.568224 5.2:-70774091 None:intergenic
TGGTCCAGCTATATGGATTG+AGG 0.571480 5.2:-70773171 None:intergenic
CTTAGAGCACCTGTGAGAGA+TGG 0.577548 5.2:+70774158 MS.gene76062:CDS
TTGGTTGAAAGGCAAAGTAA+AGG 0.579751 5.2:+70774827 MS.gene76062:CDS
GGTACGTTGCCATCTCTCAC+AGG 0.581740 5.2:-70774167 None:intergenic
TCTTATCTGCCTCTGTGCCG+TGG 0.592423 5.2:-70774034 None:intergenic
TTTCCAACTATGTAACCAGC+AGG 0.601514 5.2:-70773610 None:intergenic
CCTAACTCACGGAAACGAGA+CGG 0.619034 5.2:-70774080 None:intergenic
ATGGCTCTGTTGCAAATGCA+TGG 0.623040 5.2:+70774401 MS.gene76062:CDS
CAAAGTTGGTGATGAAGTGA+TGG 0.627478 5.2:+70774784 MS.gene76062:CDS
AGAAATTCCCATCACACTCG+CGG 0.644090 5.2:-70773838 None:intergenic
ATTCTAGAACCATGCTACCA+CGG 0.649207 5.2:+70774017 MS.gene76062:CDS
GCGTCCATCCTTCACCCATG+GGG 0.658718 5.2:-70775210 None:intergenic
GAAAGCAATTCACACTGCAG+AGG 0.668971 5.2:+70774444 MS.gene76062:CDS
TCTCTCACAGGTGCTCTAAG+GGG 0.683162 5.2:-70774155 None:intergenic
CAATCCATATAGCTGGACCA+AGG 0.709270 5.2:+70773174 MS.gene76062:CDS
AGTGATGGTGAAGTCACTTG+AGG 0.722649 5.2:+70774799 MS.gene76062:CDS
ACCATGCTACCACGGCACAG+AGG 0.736692 5.2:+70774025 MS.gene76062:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAAAAATTAGCATTTCTA+AGG - chr5.2:70774342-70774361 None:intergenic 15.0%
!! TTATACTAAATATACATTGA+AGG - chr5.2:70774585-70774604 None:intergenic 15.0%
!!! TATTTCTATAACATAAGATA+AGG - chr5.2:70773416-70773435 None:intergenic 15.0%
!!! TATTTTTTCTTGTTATCAAA+TGG + chr5.2:70773534-70773553 MS.gene76062:intron 15.0%
!!! TTGATGATTCTTATTATTTT+AGG + chr5.2:70773968-70773987 MS.gene76062:intron 15.0%
!!! TTTTTAAAAAATTCATACCT+TGG - chr5.2:70773194-70773213 None:intergenic 15.0%
!! AGAGTCTAAATATATAATAC+TGG - chr5.2:70773590-70773609 None:intergenic 20.0%
!! TATAAAATACCAATCATGAT+GGG + chr5.2:70774600-70774619 MS.gene76062:intron 20.0%
!!! AAAATCAGTTGAATTTTGAA+AGG + chr5.2:70773210-70773229 MS.gene76062:intron 20.0%
!!! AAATCAGTTGAATTTTGAAA+GGG + chr5.2:70773211-70773230 MS.gene76062:intron 20.0%
!!! AATAGATTTTCTTTTAGACA+AGG - chr5.2:70774878-70774897 None:intergenic 20.0%
!!! TATTATTTTAGGACATTGAT+GGG + chr5.2:70773979-70773998 MS.gene76062:intron 20.0%
!!! TTATTATTTTAGGACATTGA+TGG + chr5.2:70773978-70773997 MS.gene76062:intron 20.0%
! AAATCAACTAGTAGCTAATA+AGG - chr5.2:70774286-70774305 None:intergenic 25.0%
! ACAAATTTAGAAACAAGAGA+TGG + chr5.2:70775056-70775075 MS.gene76062:intron 25.0%
! AGATTATCACATCCTATATT+AGG + chr5.2:70774054-70774073 MS.gene76062:CDS 25.0%
! GCTAATAAGGAGATATTAAA+TGG - chr5.2:70774273-70774292 None:intergenic 25.0%
! GTATAAAATACCAATCATGA+TGG + chr5.2:70774599-70774618 MS.gene76062:intron 25.0%
! TTACAAGACAATATATAGCA+AGG - chr5.2:70773774-70773793 None:intergenic 25.0%
! TTCTGCTAAATCAATTGAAA+AGG + chr5.2:70774742-70774761 MS.gene76062:CDS 25.0%
!! TTCAATTGATTTAGCAGAAT+TGG - chr5.2:70774741-70774760 None:intergenic 25.0%
!! TTTTGACATTCAAAGTATAG+AGG - chr5.2:70774489-70774508 None:intergenic 25.0%
!!! TCTCTTGTTTCTAAATTTGT+TGG - chr5.2:70775056-70775075 None:intergenic 25.0%
ACACAATATTGAAACTGAAG+AGG - chr5.2:70774986-70775005 None:intergenic 30.0%
ATTTATTTAGCCCTTCCTAT+AGG + chr5.2:70774715-70774734 MS.gene76062:intron 30.0%
CACAATATTGAAACTGAAGA+GGG - chr5.2:70774985-70775004 None:intergenic 30.0%
CATAAACGTCTATCATGTAA+GGG - chr5.2:70773452-70773471 None:intergenic 30.0%
CATGACCTAACAATATCTTT+AGG + chr5.2:70774378-70774397 MS.gene76062:intron 30.0%
GATGATTTCTTCTCATAGTT+TGG + chr5.2:70773237-70773256 MS.gene76062:intron 30.0%
GGCTAAATAAATCAAACAAG+AGG - chr5.2:70774707-70774726 None:intergenic 30.0%
GGGAATATTCAGATAGTTTA+TGG + chr5.2:70775135-70775154 MS.gene76062:intron 30.0%
GTAAAGAAACATATTGTGCA+TGG - chr5.2:70774227-70774246 None:intergenic 30.0%
GTTACAGATGAACAAATTGA+TGG + chr5.2:70773637-70773656 MS.gene76062:CDS 30.0%
TATCTCAGATGAATTGTTTG+AGG + chr5.2:70773696-70773715 MS.gene76062:CDS 30.0%
TGAATTACACAACTCTTGTT+TGG - chr5.2:70773502-70773521 None:intergenic 30.0%
TGCACAATAACTATCTTTGA+AGG - chr5.2:70774681-70774700 None:intergenic 30.0%
TGCTATATAGCATTGTTCTT+TGG + chr5.2:70774924-70774943 MS.gene76062:intron 30.0%
! AAAGCATTAAAAGCCAAAGT+TGG + chr5.2:70774770-70774789 MS.gene76062:CDS 30.0%
! ACCTAACAATATCTTTAGGA+TGG + chr5.2:70774382-70774401 MS.gene76062:intron 30.0%
! TGATTCTGATTTTGCATTAC+AGG + chr5.2:70773561-70773580 MS.gene76062:intron 30.0%
! TTCCAAACTTGCTCTTAAAA+GGG - chr5.2:70773732-70773751 None:intergenic 30.0%
! TTGTTGCTATTGATAAGTTG+TGG - chr5.2:70774200-70774219 None:intergenic 30.0%
! TTTGCTGCTTCAAAATTGAA+AGG - chr5.2:70773124-70773143 None:intergenic 30.0%
!! TAGGTCATGTTACTTGTTTT+TGG - chr5.2:70774367-70774386 None:intergenic 30.0%
!! TTCTTCTCATAGTTTGGTTT+TGG + chr5.2:70773243-70773262 MS.gene76062:intron 30.0%
!!! TCTTCTCATAGTTTGGTTTT+GGG + chr5.2:70773244-70773263 MS.gene76062:intron 30.0%
AAGAGATGGTAGACATTCAT+CGG + chr5.2:70775070-70775089 MS.gene76062:intron 35.0%
ACTTTGCCTTTCAACCAATT+TGG - chr5.2:70774825-70774844 None:intergenic 35.0%
ATATATTTAGACTCTCCTGC+TGG + chr5.2:70773595-70773614 MS.gene76062:CDS 35.0%
ATCATTGAAGCAACATCACT+AGG + chr5.2:70775114-70775133 MS.gene76062:intron 35.0%
CAAGCTTGCAAAAATTGATG+AGG + chr5.2:70773889-70773908 MS.gene76062:CDS 35.0%
CTCTTGTTCCATTTGTACAT+GGG + chr5.2:70773665-70773684 MS.gene76062:CDS 35.0%
GCATAAACGTCTATCATGTA+AGG - chr5.2:70773453-70773472 None:intergenic 35.0%
GCCATCCTAAAGATATTGTT+AGG - chr5.2:70774386-70774405 None:intergenic 35.0%
TCATTGAAGCAACATCACTA+GGG + chr5.2:70775115-70775134 MS.gene76062:intron 35.0%
TCTGATGAAACAGAAAAGTG+TGG + chr5.2:70774526-70774545 MS.gene76062:intron 35.0%
TTGAAAGGCAAAGTAAAGGT+AGG + chr5.2:70774831-70774850 MS.gene76062:intron 35.0%
TTGGTTGAAAGGCAAAGTAA+AGG + chr5.2:70774827-70774846 MS.gene76062:CDS 35.0%
! ATTTAGCAGAATTGGCCTAT+AGG - chr5.2:70774733-70774752 None:intergenic 35.0%
! GTTCCAAACTTGCTCTTAAA+AGG - chr5.2:70773733-70773752 None:intergenic 35.0%
! TGGCAATTGATGATTTCTTC+AGG + chr5.2:70773097-70773116 MS.gene76062:CDS 35.0%
! TTTGAAGCAGCAAAGACAAA+TGG + chr5.2:70773130-70773149 MS.gene76062:CDS 35.0%
!! CAGTTGAATTTTGAAAGGGA+AGG + chr5.2:70773215-70773234 MS.gene76062:intron 35.0%
!! TACCCTTTTAAGAGCAAGTT+TGG + chr5.2:70773727-70773746 MS.gene76062:intron 35.0%
!! TTTTGGGTAGAGACTCTATA+GGG + chr5.2:70773260-70773279 MS.gene76062:intron 35.0%
AAGACACCGTGTAAAAAGTG+GGG + chr5.2:70775178-70775197 MS.gene76062:CDS 40.0%
ACGAGACGGTAACCTAATAT+AGG - chr5.2:70774069-70774088 None:intergenic 40.0%
CAAGACACCGTGTAAAAAGT+GGG + chr5.2:70775177-70775196 MS.gene76062:CDS 40.0%
CATCACTTCATCACCAACTT+TGG - chr5.2:70774786-70774805 None:intergenic 40.0%
CCTGTGAGGAAAAGAATGTT+CGG + chr5.2:70774122-70774141 MS.gene76062:CDS 40.0%
GACATCATTCCCATCATGAT+TGG - chr5.2:70774612-70774631 None:intergenic 40.0%
GCTCTTGTTCCATTTGTACA+TGG + chr5.2:70773664-70773683 MS.gene76062:CDS 40.0%
GCTGGTTACATAGTTGGAAA+TGG + chr5.2:70773613-70773632 MS.gene76062:CDS 40.0%
GGTTGAACAATGAAGAAGTC+AGG + chr5.2:70774422-70774441 MS.gene76062:CDS 40.0%
GTTCCATTTGTACATGGGAT+GGG + chr5.2:70773670-70773689 MS.gene76062:CDS 40.0%
TGTTCCATTTGTACATGGGA+TGG + chr5.2:70773669-70773688 MS.gene76062:CDS 40.0%
TTGAGGCCAAATTGGTTGAA+AGG + chr5.2:70774816-70774835 MS.gene76062:CDS 40.0%
TTGATAAGTTGTGGCCAAGT+TGG - chr5.2:70774191-70774210 None:intergenic 40.0%
TTTCAGTCTCACCTAACTCA+CGG - chr5.2:70774094-70774113 None:intergenic 40.0%
TTTCCAACTATGTAACCAGC+AGG - chr5.2:70773613-70773632 None:intergenic 40.0%
! AGAAAAGTGTGGTCAGTAGT+TGG + chr5.2:70774537-70774556 MS.gene76062:intron 40.0%
! ATTCTTTTCCTCACAGGATG+AGG - chr5.2:70774119-70774138 None:intergenic 40.0%
! GAAAAGTGTGGTCAGTAGTT+GGG + chr5.2:70774538-70774557 MS.gene76062:intron 40.0%
!! ATTCTAGAACCATGCTACCA+CGG + chr5.2:70774017-70774036 MS.gene76062:CDS 40.0%
!! CAAAGTTGGTGATGAAGTGA+TGG + chr5.2:70774784-70774803 MS.gene76062:CDS 40.0%
!! GTTTTGGGTAGAGACTCTAT+AGG + chr5.2:70773259-70773278 MS.gene76062:intron 40.0%
AAAGAATGTTCGGTCGTGCT+TGG + chr5.2:70774132-70774151 MS.gene76062:CDS 45.0%
AAGCTCTCAAACAGTCTCAC+AGG - chr5.2:70773326-70773345 None:intergenic 45.0%
AGAAATTCCCATCACACTCG+CGG - chr5.2:70773841-70773860 None:intergenic 45.0%
AGACCCATCCCATGTACAAA+TGG - chr5.2:70773676-70773695 None:intergenic 45.0%
ATCTCTCACAGGTGCTCTAA+GGG - chr5.2:70774159-70774178 None:intergenic 45.0%
CAATCCATATAGCTGGACCA+AGG + chr5.2:70773174-70773193 MS.gene76062:CDS 45.0%
CATACCTTGGTCCAGCTATA+TGG - chr5.2:70773181-70773200 None:intergenic 45.0%
CCAAGACACCGTGTAAAAAG+TGG + chr5.2:70775176-70775195 MS.gene76062:CDS 45.0%
CTGAAAAACCTCATCCTGTG+AGG + chr5.2:70774108-70774127 MS.gene76062:CDS 45.0%
GAAAGCAATTCACACTGCAG+AGG + chr5.2:70774444-70774463 MS.gene76062:CDS 45.0%
GAAGTCACTTGAGGCCAAAT+TGG + chr5.2:70774808-70774827 MS.gene76062:CDS 45.0%
TGCACCTCAATCCATATAGC+TGG + chr5.2:70773167-70773186 MS.gene76062:CDS 45.0%
! AGCAGAATTGGCCTATAGGA+AGG - chr5.2:70774729-70774748 None:intergenic 45.0%
! AGTGATGGTGAAGTCACTTG+AGG + chr5.2:70774799-70774818 MS.gene76062:CDS 45.0%
! ATGGCTCTGTTGCAAATGCA+TGG + chr5.2:70774401-70774420 MS.gene76062:CDS 45.0%
! CCGAACATTCTTTTCCTCAC+AGG - chr5.2:70774125-70774144 None:intergenic 45.0%
! GCAGAATTGGCCTATAGGAA+GGG - chr5.2:70774728-70774747 None:intergenic 45.0%
! TATGGATTGAGGTGCAGAGT+TGG - chr5.2:70773163-70773182 None:intergenic 45.0%
! TCTCCTGCTGGTTACATAGT+TGG + chr5.2:70773607-70773626 MS.gene76062:CDS 45.0%
! TGGTCCAGCTATATGGATTG+AGG - chr5.2:70773174-70773193 None:intergenic 45.0%
! TGTTGCTTCAATGATCCTCG+AGG - chr5.2:70775109-70775128 None:intergenic 45.0%
!!! CCACTTTTTACACGGTGTCT+TGG - chr5.2:70775179-70775198 None:intergenic 45.0%
!!! GCAGAACCCCACTTTTTACA+CGG - chr5.2:70775187-70775206 None:intergenic 45.0%
AGGTTAACCGCGAGTGTGAT+GGG + chr5.2:70773831-70773850 MS.gene76062:CDS 50.0%
ATGTTGCACTCTGTTGCAGG+AGG + chr5.2:70773811-70773830 MS.gene76062:intron 50.0%
CAATTCACACTGCAGAGGTG+AGG + chr5.2:70774449-70774468 MS.gene76062:intron 50.0%
CATCTCTCACAGGTGCTCTA+AGG - chr5.2:70774160-70774179 None:intergenic 50.0%
CCTAACTCACGGAAACGAGA+CGG - chr5.2:70774083-70774102 None:intergenic 50.0%
GAGATGGCAACGTACCAACT+TGG + chr5.2:70774174-70774193 MS.gene76062:intron 50.0%
GCAGAGGTGAGGTTTCTTGT+AGG + chr5.2:70774460-70774479 MS.gene76062:intron 50.0%
GTCATGTTGCACTCTGTTGC+AGG + chr5.2:70773808-70773827 MS.gene76062:intron 50.0%
TGCTTCAATGATCCTCGAGG+CGG - chr5.2:70775106-70775125 None:intergenic 50.0%
! CTTAGAGCACCTGTGAGAGA+TGG + chr5.2:70774158-70774177 MS.gene76062:CDS 50.0%
! TCTCTCACAGGTGCTCTAAG+GGG - chr5.2:70774158-70774177 None:intergenic 50.0%
CCGTCTCGTTTCCGTGAGTT+AGG + chr5.2:70774080-70774099 MS.gene76062:CDS 55.0%
CTTTCCCCATGGGTGAAGGA+TGG + chr5.2:70775206-70775225 MS.gene76062:CDS 55.0%
GAGGTTAACCGCGAGTGTGA+TGG + chr5.2:70773830-70773849 MS.gene76062:CDS 55.0%
GATTGAGGTGCAGAGTTGGC+AGG - chr5.2:70773159-70773178 None:intergenic 55.0%
GGTACGTTGCCATCTCTCAC+AGG - chr5.2:70774170-70774189 None:intergenic 55.0%
TCTGCTTTCCCCATGGGTGA+AGG + chr5.2:70775202-70775221 MS.gene76062:CDS 55.0%
TCTTATCTGCCTCTGTGCCG+TGG - chr5.2:70774037-70774056 None:intergenic 55.0%
TGCGTCCATCCTTCACCCAT+GGG - chr5.2:70775214-70775233 None:intergenic 55.0%
TGGGGTTCTGCTTTCCCCAT+GGG + chr5.2:70775196-70775215 MS.gene76062:CDS 55.0%
TTGCGTCCATCCTTCACCCA+TGG - chr5.2:70775215-70775234 None:intergenic 55.0%
ACCATGCTACCACGGCACAG+AGG + chr5.2:70774025-70774044 MS.gene76062:CDS 60.0%
GCGTCCATCCTTCACCCATG+GGG - chr5.2:70775213-70775232 None:intergenic 60.0%
GTGGGGTTCTGCTTTCCCCA+TGG + chr5.2:70775195-70775214 MS.gene76062:CDS 60.0%
GCCTCTGTGCCGTGGTAGCA+TGG - chr5.2:70774029-70774048 None:intergenic 65.0%
GGAGTCTAGCTACCGCCTCG+AGG + chr5.2:70775091-70775110 MS.gene76062:intron 65.0%


Chromosome Type Strat End Strand Name
chr5.2 gene 70773094 70775250 70773094 ID=MS.gene76062
chr5.2 mRNA 70773094 70775250 70773094 ID=MS.gene76062.t1;Parent=MS.gene76062
chr5.2 exon 70773094 70773195 70773094 ID=MS.gene76062.t1.exon1;Parent=MS.gene76062.t1
chr5.2 CDS 70773094 70773195 70773094 ID=cds.MS.gene76062.t1;Parent=MS.gene76062.t1
chr5.2 exon 70773583 70773717 70773583 ID=MS.gene76062.t1.exon2;Parent=MS.gene76062.t1
chr5.2 CDS 70773583 70773717 70773583 ID=cds.MS.gene76062.t1;Parent=MS.gene76062.t1
chr5.2 exon 70773830 70773910 70773830 ID=MS.gene76062.t1.exon3;Parent=MS.gene76062.t1
chr5.2 CDS 70773830 70773910 70773830 ID=cds.MS.gene76062.t1;Parent=MS.gene76062.t1
chr5.2 exon 70773990 70774184 70773990 ID=MS.gene76062.t1.exon4;Parent=MS.gene76062.t1
chr5.2 CDS 70773990 70774184 70773990 ID=cds.MS.gene76062.t1;Parent=MS.gene76062.t1
chr5.2 exon 70774400 70774465 70774400 ID=MS.gene76062.t1.exon5;Parent=MS.gene76062.t1
chr5.2 CDS 70774400 70774465 70774400 ID=cds.MS.gene76062.t1;Parent=MS.gene76062.t1
chr5.2 exon 70774737 70774848 70774737 ID=MS.gene76062.t1.exon6;Parent=MS.gene76062.t1
chr5.2 CDS 70774737 70774848 70774737 ID=cds.MS.gene76062.t1;Parent=MS.gene76062.t1
chr5.2 exon 70775147 70775250 70775147 ID=MS.gene76062.t1.exon7;Parent=MS.gene76062.t1
chr5.2 CDS 70775147 70775250 70775147 ID=cds.MS.gene76062.t1;Parent=MS.gene76062.t1
Gene Sequence

>MS.gene76062

ATGTGGCAATTGATGATTTCTTCAGGTCCTTTCAATTTTGAAGCAGCAAAGACAAATGGAAGCCTGCCAACTCTGCACCTCAATCCATATAGCTGGACCAAGGTATGAATTTTTTAAAAATCAGTTGAATTTTGAAAGGGAAGGATGATTTCTTCTCATAGTTTGGTTTTGGGTAGAGACTCTATAGGGTTGTTTGTATTGACTTATTTAAATTTATGTATAATAAGCACCTGTGAGACTGTTTGAGAGCTTTTGAAAAGAATGAGCTCTTCATGATAGCTTATGAATGCAGCTTAGAACTTATATGTAAACTGTTTGACCTTATCTTATGTTATAGAAATAACTTATATGTAAGCCCTTACATGATAGACGTTTATGCTATAAGTAAGTAGTTAAGTTGTTTATCCAAACAAGAGTTGTGTAATTCAACAATCACTAGTTATTTTTTCTTGTTATCAAATGGTATATGATTCTGATTTTGCATTACAGGTTTCCAGTATTATATATTTAGACTCTCCTGCTGGTTACATAGTTGGAAATGGTGTTACAGATGAACAAATTGATGGCAATGCTCTTGTTCCATTTGTACATGGGATGGGTCTTATCTCAGATGAATTGTTTGAGGTGAAAATATACCCTTTTAAGAGCAAGTTTGGAACTATATCTATTGTTTTAAACCTTGCTATATATTGTCTTGTAAGTATGTTTCTTTAAGTCATGTTGCACTCTGTTGCAGGAGGTTAACCGCGAGTGTGATGGGAATTTCTATAATTCACTCAGTGATAATTGTACAAACAAGCTTGCAAAAATTGATGAGGTGATTTAATTATACTATAGTACTGAGATTATAAGAAATAAGTGAATTTAGCACTCTTTGATGATTCTTATTATTTTAGGACATTGATGGGTTGAATGTATATAACATTCTAGAACCATGCTACCACGGCACAGAGGCAGATAAGATTATCACATCCTATATTAGGTTACCGTCTCGTTTCCGTGAGTTAGGTGAGACTGAAAAACCTCATCCTGTGAGGAAAAGAATGTTCGGTCGTGCTTGGCCCCTTAGAGCACCTGTGAGAGATGGCAACGTACCAACTTGGCCACAACTTATCAATAGCAACAATGTTCCATGCACAATATGTTTCTTTACTACTATCTAAGTGTCTATATTTACCATTTAATATCTCCTTATTAGCTACTAGTTGATTTAATTGCTCGATTATCATTGCATACTTGTTTAAACCTTAGAAATGCTAATTTTTTATTGCCAAAAACAAGTAACATGACCTAACAATATCTTTAGGATGGCTCTGTTGCAAATGCATGGTTGAACAATGAAGAAGTCAGGAAAGCAATTCACACTGCAGAGGTGAGGTTTCTTGTAGGATACCTCTATACTTTGAATGTCAAAAGACTAAATTATTATCTCTCTGATGAAACAGAAAAGTGTGGTCAGTAGTTGGGATTTATGCACAGACAAAATTTCCTTCAATGTATATTTAGTATAAAATACCAATCATGATGGGAATGATGTCTTAGAGAGATATGAGATGTTTGACTATGATTTGTGTGCTTTTTCTTCCTTCAAAGATAGTTATTGTGCAAAACCTCTTGTTTGATTTATTTAGCCCTTCCTATAGGCCAATTCTGCTAAATCAATTGAAAAGGATCATAAAGCATTAAAAGCCAAAGTTGGTGATGAAGTGATGGTGAAGTCACTTGAGGCCAAATTGGTTGAAAGGCAAAGTAAAGGTAGGTTCTTGTGCAATATTGTTATACCTTGTCTAAAAGAAAATCTATTTTACGATTTATATGAAAAATCTTCAATGCTATATAGCATTGTTCTTTGGACATGTATATTAGATTGTATATGTATGTTTGTTTTCCCTCTTCAGTTTCAATATTGTGTTTCAATTTACTAATCATTGTCTTATTTATTTTTCTTCTTCTTTTCAGCCAACAAATTTAGAAACAAGAGATGGTAGACATTCATCGGAGTCTAGCTACCGCCTCGAGGATCATTGAAGCAACATCACTAGGGAATATTCAGATAGTTTATGGACTAGAATTAAGAACAATCCAAGACACCGTGTAAAAAGTGGGGTTCTGCTTTCCCCATGGGTGAAGGATGGACGCAAAAAGAAGAAGATTTAA
Protein sequence

>MS.gene76062.t1

MWQLMISSGPFNFEAAKTNGSLPTLHLNPYSWTKVSSIIYLDSPAGYIVGNGVTDEQIDGNALVPFVHGMGLISDELFEEVNRECDGNFYNSLSDNCTNKLAKIDEDIDGLNVYNILEPCYHGTEADKIITSYIRLPSRFRELGETEKPHPVRKRMFGRAWPLRAPVRDGNDGSVANAWLNNEEVRKAIHTAEANSAKSIEKDHKALKAKVGDEVMVKSLEAKLVERQSKDSLWTRIKNNPRHRVKSGVLLSPWVKDGRKKKKI