Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050029.t1 | XP_004489454.1 | 86.3 | 117 | 16 | 0 | 54 | 170 | 375 | 491 | 2.10E-47 | 198.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050029.t1 | F4I2H7 | 33.7 | 86 | 57 | 0 | 63 | 148 | 646 | 731 | 3.3e-09 | 63.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050029.t1 | A0A1S2XHJ0 | 86.3 | 117 | 16 | 0 | 54 | 170 | 375 | 491 | 1.5e-47 | 198.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050026 | MS.gene050029 | 0.865054 | 7.80E-65 | -1.69E-46 |
| MS.gene050029 | MS.gene050031 | 0.915816 | 3.75E-85 | -1.69E-46 |
| MS.gene050029 | MS.gene050043 | 0.912047 | 3.04E-83 | -1.69E-46 |
| MS.gene050029 | MS.gene05415 | 0.809043 | 2.30E-50 | -1.69E-46 |
| MS.gene050029 | MS.gene054291 | -0.812539 | 4.03E-51 | -1.69E-46 |
| MS.gene050029 | MS.gene058037 | 0.817596 | 3.04E-52 | -1.69E-46 |
| MS.gene050029 | MS.gene058979 | 0.800454 | 1.43E-48 | -1.69E-46 |
| MS.gene050029 | MS.gene059272 | 0.801287 | 9.67E-49 | -1.69E-46 |
| MS.gene050029 | MS.gene059625 | 0.800718 | 1.26E-48 | -1.69E-46 |
| MS.gene050029 | MS.gene06269 | 0.824583 | 7.46E-54 | -1.69E-46 |
| MS.gene050029 | MS.gene064321 | 0.804729 | 1.88E-49 | -1.69E-46 |
| MS.gene050029 | MS.gene066313 | 0.812364 | 4.40E-51 | -1.69E-46 |
| MS.gene050029 | MS.gene066335 | 0.817799 | 2.73E-52 | -1.69E-46 |
| MS.gene050029 | MS.gene06698 | 0.800419 | 1.45E-48 | -1.69E-46 |
| MS.gene050029 | MS.gene067208 | 0.805646 | 1.21E-49 | -1.69E-46 |
| MS.gene050029 | MS.gene068014 | -0.822563 | 2.22E-53 | -1.69E-46 |
| MS.gene050029 | MS.gene068924 | 0.80135 | 9.38E-49 | -1.69E-46 |
| MS.gene050029 | MS.gene070582 | 0.833169 | 6.22E-56 | -1.69E-46 |
| MS.gene050029 | MS.gene070818 | 0.804261 | 2.35E-49 | -1.69E-46 |
| MS.gene050029 | MS.gene071342 | 0.807886 | 4.06E-50 | -1.69E-46 |
| MS.gene050029 | MS.gene071442 | 0.811007 | 8.68E-51 | -1.69E-46 |
| MS.gene050029 | MS.gene071551 | 0.813064 | 3.09E-51 | -1.69E-46 |
| MS.gene050029 | MS.gene072067 | 0.808399 | 3.16E-50 | -1.69E-46 |
| MS.gene050029 | MS.gene072397 | -0.810151 | 1.33E-50 | -1.69E-46 |
| MS.gene050029 | MS.gene07394 | 0.808013 | 3.82E-50 | -1.69E-46 |
| MS.gene050029 | MS.gene09417 | 0.807089 | 5.99E-50 | -1.69E-46 |
| MS.gene050029 | MS.gene25151 | 0.811224 | 7.79E-51 | -1.69E-46 |
| MS.gene050029 | MS.gene29086 | 0.803203 | 3.90E-49 | -1.69E-46 |
| MS.gene050029 | MS.gene47552 | 0.80191 | 7.21E-49 | -1.69E-46 |
| MS.gene050029 | MS.gene48919 | 0.800757 | 1.24E-48 | -1.69E-46 |
| MS.gene050029 | MS.gene50865 | 0.83036 | 3.07E-55 | -1.69E-46 |
| MS.gene050029 | MS.gene50875 | 0.803662 | 3.13E-49 | -1.69E-46 |
| MS.gene050029 | MS.gene52130 | 0.80163 | 8.23E-49 | -1.69E-46 |
| MS.gene050029 | MS.gene54507 | 0.802794 | 4.74E-49 | -1.69E-46 |
| MS.gene050029 | MS.gene58638 | 0.82096 | 5.20E-53 | -1.69E-46 |
| MS.gene050029 | MS.gene61075 | -0.805647 | 1.21E-49 | -1.69E-46 |
| MS.gene050029 | MS.gene61388 | 0.810823 | 9.52E-51 | -1.69E-46 |
| MS.gene050029 | MS.gene63030 | 0.801634 | 8.21E-49 | -1.69E-46 |
| MS.gene050029 | MS.gene63984 | 0.808975 | 2.38E-50 | -1.69E-46 |
| MS.gene050029 | MS.gene68333 | 0.812334 | 4.47E-51 | -1.69E-46 |
| MS.gene050029 | MS.gene68824 | 0.821841 | 3.26E-53 | -1.69E-46 |
| MS.gene050029 | MS.gene68826 | 0.825288 | 5.09E-54 | -1.69E-46 |
| MS.gene050029 | MS.gene68999 | 0.812277 | 4.60E-51 | -1.69E-46 |
| MS.gene050029 | MS.gene75184 | 0.803052 | 4.19E-49 | -1.69E-46 |
| MS.gene050029 | MS.gene76062 | 0.802417 | 5.66E-49 | -1.69E-46 |
| MS.gene050029 | MS.gene76148 | 0.809118 | 2.22E-50 | -1.69E-46 |
| MS.gene050029 | MS.gene78647 | 0.805265 | 1.45E-49 | -1.69E-46 |
| MS.gene050029 | MS.gene80548 | 0.805376 | 1.38E-49 | -1.69E-46 |
| MS.gene050029 | MS.gene82793 | 0.815326 | 9.79E-52 | -1.69E-46 |
| MS.gene050029 | MS.gene84994 | 0.819512 | 1.12E-52 | -1.69E-46 |
| MS.gene050029 | MS.gene86606 | 0.8098 | 1.58E-50 | -1.69E-46 |
| MS.gene050029 | MS.gene88063 | 0.805557 | 1.26E-49 | -1.69E-46 |
| MS.gene050029 | MS.gene96613 | 0.802832 | 4.65E-49 | -1.69E-46 |
| MS.gene050029 | MS.gene97534 | 0.803283 | 3.75E-49 | -1.69E-46 |
| MS.gene050029 | MS.gene98561 | 0.806106 | 9.66E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050029.t1 | MTR_6g015010 | 91.870 | 123 | 10 | 0 | 48 | 170 | 362 | 484 | 1.19e-75 | 234 |
| MS.gene050029.t1 | MTR_7g013070 | 65.625 | 128 | 35 | 2 | 48 | 170 | 333 | 456 | 2.28e-49 | 165 |
| MS.gene050029.t1 | MTR_3g064800 | 46.154 | 117 | 61 | 1 | 52 | 168 | 19 | 133 | 7.91e-27 | 99.0 |
| MS.gene050029.t1 | MTR_3g064800 | 46.154 | 117 | 61 | 1 | 52 | 168 | 31 | 145 | 9.90e-27 | 99.0 |
| MS.gene050029.t1 | MTR_3g064800 | 52.577 | 97 | 44 | 1 | 52 | 148 | 49 | 143 | 1.17e-26 | 99.4 |
| MS.gene050029.t1 | MTR_4g078565 | 31.183 | 93 | 63 | 1 | 66 | 158 | 647 | 738 | 2.88e-11 | 61.2 |
| MS.gene050029.t1 | MTR_4g078565 | 31.183 | 93 | 63 | 1 | 66 | 158 | 640 | 731 | 2.93e-11 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050029.t1 | AT5G15510 | 65.041 | 123 | 43 | 0 | 48 | 170 | 368 | 490 | 5.33e-51 | 170 |
| MS.gene050029.t1 | AT3G01015 | 71.698 | 106 | 30 | 0 | 50 | 155 | 360 | 465 | 2.99e-48 | 163 |
| MS.gene050029.t1 | AT5G15510 | 73.256 | 86 | 23 | 0 | 48 | 133 | 368 | 453 | 6.08e-38 | 135 |
| MS.gene050029.t1 | AT5G15510 | 73.256 | 86 | 23 | 0 | 48 | 133 | 368 | 453 | 6.08e-38 | 135 |
| MS.gene050029.t1 | AT5G15510 | 73.256 | 86 | 23 | 0 | 48 | 133 | 368 | 453 | 1.30e-37 | 135 |
| MS.gene050029.t1 | AT5G37478 | 52.577 | 97 | 46 | 0 | 50 | 146 | 36 | 132 | 2.23e-28 | 103 |
| MS.gene050029.t1 | AT5G37478 | 52.577 | 97 | 46 | 0 | 50 | 146 | 56 | 152 | 5.69e-28 | 103 |
| MS.gene050029.t1 | AT5G37478 | 52.577 | 97 | 46 | 0 | 50 | 146 | 23 | 119 | 6.19e-28 | 102 |
| MS.gene050029.t1 | AT1G03780 | 33.721 | 86 | 57 | 0 | 63 | 148 | 646 | 731 | 2.56e-13 | 67.4 |
| MS.gene050029.t1 | AT1G03780 | 33.721 | 86 | 57 | 0 | 63 | 148 | 646 | 731 | 3.32e-13 | 67.0 |
| MS.gene050029.t1 | AT5G44270 | 32.558 | 86 | 58 | 0 | 63 | 148 | 207 | 292 | 1.54e-11 | 61.6 |
Find 37 sgRNAs with CRISPR-Local
Find 114 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAAGGCATTGGCTGCGCTTT+AGG | 0.259331 | 5.4:+51224981 | None:intergenic |
| GAGCAATCTGAAGTTGTTTC+TGG | 0.276694 | 5.4:-51226622 | MS.gene050029:CDS |
| ATGTGAAACTTTGGTTCTTT+TGG | 0.287997 | 5.4:+51224574 | None:intergenic |
| TGCTAGTTTGTTTACTGCTT+GGG | 0.315351 | 5.4:-51226584 | MS.gene050029:CDS |
| ATGAATGGTCTGTCAAAATA+AGG | 0.316056 | 5.4:+51224963 | None:intergenic |
| TCAACCACTTGATCTTCTTA+TGG | 0.322478 | 5.4:+51224545 | None:intergenic |
| TGCACCTGATGATCAAATTC+CGG | 0.346673 | 5.4:+51225291 | None:intergenic |
| GCACCTGATGATCAAATTCC+GGG | 0.368237 | 5.4:+51225292 | None:intergenic |
| GTGTGTAGCAGGAACTCTTC+TGG | 0.394499 | 5.4:-51226411 | MS.gene050029:CDS |
| AGAACAACAGAAAAGGGAAT+TGG | 0.400583 | 5.4:-51225168 | MS.gene050029:CDS |
| ATGCTAGTTTGTTTACTGCT+TGG | 0.408757 | 5.4:-51226585 | MS.gene050029:CDS |
| AGGCTTTGTGCTTTCTTTCA+CGG | 0.409057 | 5.4:+51225356 | None:intergenic |
| AGGAAGAGATTAGGAGATTG+AGG | 0.413621 | 5.4:-51225016 | MS.gene050029:CDS |
| CATTACCTCGTTGGAATGAA+TGG | 0.424164 | 5.4:+51224948 | None:intergenic |
| CTATGAAGCTTCACATCAAT+AGG | 0.425787 | 5.4:+51225336 | None:intergenic |
| GGCTTTGTGCTTTCTTTCAC+GGG | 0.443138 | 5.4:+51225357 | None:intergenic |
| TCGCCCGGAATTTGATCATC+AGG | 0.444522 | 5.4:-51225295 | MS.gene050029:intron |
| GGGATTGTGGAAGTGGAAGA+AGG | 0.460575 | 5.4:-51226564 | MS.gene050029:intron |
| GGAATTGGAAATACAACAAA+AGG | 0.463028 | 5.4:-51225153 | MS.gene050029:intron |
| TTGTTTACTGCTTGGGATTG+TGG | 0.473847 | 5.4:-51226577 | MS.gene050029:CDS |
| TTTGATAGAACAACAGAAAA+GGG | 0.474688 | 5.4:-51225174 | MS.gene050029:CDS |
| TGGCTGAAGAGGAAGAGATT+AGG | 0.480404 | 5.4:-51225025 | MS.gene050029:CDS |
| GTTTGATAGAACAACAGAAA+AGG | 0.481566 | 5.4:-51225175 | MS.gene050029:CDS |
| TCCCTTACAGTTGGCTGAAG+AGG | 0.485828 | 5.4:-51225036 | MS.gene050029:intron |
| GAAGCTTCATAGTGATTTGA+GGG | 0.498697 | 5.4:-51225325 | MS.gene050029:CDS |
| AGAGATTAGGAGATTGAGGA+AGG | 0.500982 | 5.4:-51225012 | MS.gene050029:CDS |
| TGAAGCTTCATAGTGATTTG+AGG | 0.503817 | 5.4:-51225326 | MS.gene050029:CDS |
| TTTGAGGGCAATTGATCGCC+CGG | 0.517154 | 5.4:-51225310 | MS.gene050029:CDS |
| TTGATCAATCATTACCTCGT+TGG | 0.518913 | 5.4:+51224939 | None:intergenic |
| ACTGCTTGGGATTGTGGAAG+TGG | 0.521266 | 5.4:-51226571 | MS.gene050029:CDS |
| TGGTGAGGTATGTGAAACTT+TGG | 0.533377 | 5.4:+51224565 | None:intergenic |
| CACTTGATCTTCTTATGGTG+AGG | 0.567778 | 5.4:+51224550 | None:intergenic |
| GGTCTGTCAAAATAAGGCAT+TGG | 0.582294 | 5.4:+51224969 | None:intergenic |
| TTTGTGCTTTCTTTCACGGG+AGG | 0.620777 | 5.4:+51225360 | None:intergenic |
| CTCACCATAAGAAGATCAAG+TGG | 0.629924 | 5.4:-51224549 | MS.gene050029:CDS |
| TGTAGCAGGAACTCTTCTGG+TGG | 0.669446 | 5.4:-51226408 | MS.gene050029:CDS |
| ACAGACCATTCATTCCAACG+AGG | 0.804126 | 5.4:-51224953 | MS.gene050029:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAAAAATTCTTTACATTGA+CGG | - | chr5.4:51225328-51225347 | MS.gene050029:CDS | 15.0% |
| !! | AAAACTTTCAGTTTATTTGA+TGG | - | chr5.4:51225287-51225306 | MS.gene050029:intron | 20.0% |
| !! | ACTATAATACTAATGAAGAT+TGG | - | chr5.4:51224904-51224923 | MS.gene050029:intron | 20.0% |
| !! | CAAAAAGAGACAAAAAATAA+TGG | + | chr5.4:51226489-51226508 | None:intergenic | 20.0% |
| !! | CAAATTTATCATAATTCTGT+TGG | - | chr5.4:51225693-51225712 | MS.gene050029:intron | 20.0% |
| !!! | CTTTTTGTCTCATTATATTT+TGG | - | chr5.4:51226502-51226521 | MS.gene050029:intron | 20.0% |
| !!! | TTTGTAATATTTTCTAAGAG+TGG | + | chr5.4:51226226-51226245 | None:intergenic | 20.0% |
| ! | ATACACACTTTAATTGATCT+CGG | + | chr5.4:51226433-51226452 | None:intergenic | 25.0% |
| ! | ATAGCAATTCTCAATTAGAA+CGG | - | chr5.4:51225467-51225486 | MS.gene050029:intron | 25.0% |
| ! | ATGCTAGGATATTAGATATA+AGG | + | chr5.4:51225433-51225452 | None:intergenic | 25.0% |
| ! | TCATGATGTGTAAAACTAAA+GGG | + | chr5.4:51225885-51225904 | None:intergenic | 25.0% |
| ! | TCATTTCTGCAAAATGTTAT+CGG | - | chr5.4:51224855-51224874 | MS.gene050029:intron | 25.0% |
| ! | TGTATTTCCATTTGTGATTA+AGG | - | chr5.4:51224791-51224810 | MS.gene050029:intron | 25.0% |
| ! | TTAGTGATTCACTATTAACA+AGG | - | chr5.4:51224927-51224946 | MS.gene050029:intron | 25.0% |
| ! | TTCATGATGTGTAAAACTAA+AGG | + | chr5.4:51225886-51225905 | None:intergenic | 25.0% |
| ! | TTTGATAGAACAACAGAAAA+GGG | - | chr5.4:51225954-51225973 | MS.gene050029:intron | 25.0% |
| !! | ATTTTGCAATGTTGTGAATT+CGG | - | chr5.4:51226461-51226480 | MS.gene050029:intron | 25.0% |
| !! | CTTTTAGATAAAGGAAAACA+TGG | + | chr5.4:51226055-51226074 | None:intergenic | 25.0% |
| !!! | CTCATTATATTTTGGTTTGA+AGG | - | chr5.4:51226510-51226529 | MS.gene050029:intron | 25.0% |
| !!! | GTAATTTGTTAATCAAGCAT+AGG | - | chr5.4:51225079-51225098 | MS.gene050029:intron | 25.0% |
| !!! | GTATGTTTTTAACAGTTTCT+TGG | - | chr5.4:51226251-51226270 | MS.gene050029:intron | 25.0% |
| !!! | GTCATTGATTTGAAATCAAT+TGG | + | chr5.4:51226411-51226430 | None:intergenic | 25.0% |
| !!! | TGGCATATCATTTTTTGATT+CGG | - | chr5.4:51226271-51226290 | MS.gene050029:intron | 25.0% |
| !!! | TTTAAAGTTGATTTGACGAA+AGG | - | chr5.4:51226374-51226393 | MS.gene050029:intron | 25.0% |
| AAACATGGCAACTCAAAATT+AGG | + | chr5.4:51226040-51226059 | None:intergenic | 30.0% | |
| AGCATATACACTTCAAACTA+AGG | + | chr5.4:51225005-51225024 | None:intergenic | 30.0% | |
| ATCGTAATTGCATTACATGA+TGG | + | chr5.4:51225149-51225168 | None:intergenic | 30.0% | |
| ATGAATGGTCTGTCAAAATA+AGG | + | chr5.4:51226168-51226187 | None:intergenic | 30.0% | |
| CATGATGTGTAAAACTAAAG+GGG | + | chr5.4:51225884-51225903 | None:intergenic | 30.0% | |
| CTTTATCTAAAAGTTGACGT+CGG | - | chr5.4:51226062-51226081 | MS.gene050029:intron | 30.0% | |
| GAATTAAATCTGTGAGTAGT+TGG | - | chr5.4:51225358-51225377 | MS.gene050029:CDS | 30.0% | |
| GGAATTGGAAATACAACAAA+AGG | - | chr5.4:51225975-51225994 | MS.gene050029:intron | 30.0% | |
| GTTTGATAGAACAACAGAAA+AGG | - | chr5.4:51225953-51225972 | MS.gene050029:intron | 30.0% | |
| TAACAACTCACAGTCAAATT+TGG | - | chr5.4:51225028-51225047 | MS.gene050029:CDS | 30.0% | |
| TCATTCGATCTCAAAATCAA+TGG | - | chr5.4:51226342-51226361 | MS.gene050029:intron | 30.0% | |
| TCGTAATTGCATTACATGAT+GGG | + | chr5.4:51225148-51225167 | None:intergenic | 30.0% | |
| TCTAATATCCTAGCATAACA+TGG | - | chr5.4:51225437-51225456 | MS.gene050029:intron | 30.0% | |
| TTACGATTATAGCTTATGTC+TGG | - | chr5.4:51225162-51225181 | MS.gene050029:CDS | 30.0% | |
| ! | TTCATTTTGCTTGAGATTGT+TGG | - | chr5.4:51224656-51224675 | MS.gene050029:intron | 30.0% |
| !!! | ATGTGAAACTTTGGTTCTTT+TGG | + | chr5.4:51226557-51226576 | None:intergenic | 30.0% |
| !!! | TTTGGTTCTTTTGGTATAGT+TGG | + | chr5.4:51226548-51226567 | None:intergenic | 30.0% |
| ACTATTAACAAGGTCTTCCA+TGG | - | chr5.4:51224937-51224956 | MS.gene050029:intron | 35.0% | |
| AGAACAACAGAAAAGGGAAT+TGG | - | chr5.4:51225960-51225979 | MS.gene050029:intron | 35.0% | |
| AGACTCAAGAGGATGTTTAT+TGG | + | chr5.4:51225561-51225580 | None:intergenic | 35.0% | |
| ATTTGTGATTAAGGCATGTC+CGG | - | chr5.4:51224800-51224819 | MS.gene050029:intron | 35.0% | |
| CTATGAAGCTTCACATCAAT+AGG | + | chr5.4:51225795-51225814 | None:intergenic | 35.0% | |
| CTGTAACAGAAGAATGCTAA+TGG | + | chr5.4:51225736-51225755 | None:intergenic | 35.0% | |
| GAAGCTTCATAGTGATTTGA+GGG | - | chr5.4:51225803-51225822 | MS.gene050029:intron | 35.0% | |
| GGTATATATTCCCTTACAGT+TGG | - | chr5.4:51226083-51226102 | MS.gene050029:intron | 35.0% | |
| TAACGCAGCAACATCATTAA+GGG | + | chr5.4:51225534-51225553 | None:intergenic | 35.0% | |
| TCAACCACTTGATCTTCTTA+TGG | + | chr5.4:51226586-51226605 | None:intergenic | 35.0% | |
| TCAATTAGAACGGTACATTG+TGG | - | chr5.4:51225477-51225496 | MS.gene050029:intron | 35.0% | |
| TGAAGCTTCATAGTGATTTG+AGG | - | chr5.4:51225802-51225821 | MS.gene050029:intron | 35.0% | |
| TGATGAATGCTTAACTGTGT+AGG | - | chr5.4:51225915-51225934 | MS.gene050029:intron | 35.0% | |
| TGGAGTTAATTCAGTTTCAG+TGG | - | chr5.4:51225601-51225620 | MS.gene050029:intron | 35.0% | |
| TTAACGCAGCAACATCATTA+AGG | + | chr5.4:51225535-51225554 | None:intergenic | 35.0% | |
| TTGATCAATCATTACCTCGT+TGG | + | chr5.4:51226192-51226211 | None:intergenic | 35.0% | |
| ! | ATAAATTTTCACGCACTGTC+AGG | - | chr5.4:51225194-51225213 | MS.gene050029:CDS | 35.0% |
| ! | CGACGTCAACTTTTAGATAA+AGG | + | chr5.4:51226064-51226083 | None:intergenic | 35.0% |
| ! | CTGATTTGAGATGTGAAAGT+TGG | + | chr5.4:51226012-51226031 | None:intergenic | 35.0% |
| ! | TAAATTTTCACGCACTGTCA+GGG | - | chr5.4:51225195-51225214 | MS.gene050029:intron | 35.0% |
| !! | ATGCTAGTTTGTTTACTGCT+TGG | - | chr5.4:51224543-51224562 | MS.gene050029:CDS | 35.0% |
| !! | GATGTGAAAGTTGGTAAACA+TGG | + | chr5.4:51226003-51226022 | None:intergenic | 35.0% |
| !! | TGCTAGTTTGTTTACTGCTT+GGG | - | chr5.4:51224544-51224563 | MS.gene050029:CDS | 35.0% |
| ACATATGGTCAAGACTCAAG+AGG | + | chr5.4:51225572-51225591 | None:intergenic | 40.0% | |
| ACTCCATATCAGCTGACATA+TGG | + | chr5.4:51225587-51225606 | None:intergenic | 40.0% | |
| ACTGATCATGTGTATGACTC+TGG | - | chr5.4:51225245-51225264 | MS.gene050029:intron | 40.0% | |
| AGAGATTAGGAGATTGAGGA+AGG | - | chr5.4:51226116-51226135 | MS.gene050029:intron | 40.0% | |
| AGGAAGAGATTAGGAGATTG+AGG | - | chr5.4:51226112-51226131 | MS.gene050029:intron | 40.0% | |
| ATCAACGTGTTAGTGACATG+CGG | - | chr5.4:51224879-51224898 | MS.gene050029:intron | 40.0% | |
| CACTTGATCTTCTTATGGTG+AGG | + | chr5.4:51226581-51226600 | None:intergenic | 40.0% | |
| CATGACACAGTTATCCATCT+TGG | - | chr5.4:51226319-51226338 | MS.gene050029:intron | 40.0% | |
| CATTACCTCGTTGGAATGAA+TGG | + | chr5.4:51226183-51226202 | None:intergenic | 40.0% | |
| CGATTATAGCTTATGTCTGG+TGG | - | chr5.4:51225165-51225184 | MS.gene050029:CDS | 40.0% | |
| CTCACCATAAGAAGATCAAG+TGG | - | chr5.4:51226579-51226598 | MS.gene050029:CDS | 40.0% | |
| GGACATGCCTTAATCACAAA+TGG | + | chr5.4:51224801-51224820 | None:intergenic | 40.0% | |
| GGTCTGTCAAAATAAGGCAT+TGG | + | chr5.4:51226162-51226181 | None:intergenic | 40.0% | |
| TATCCTAGCATAACATGGCA+AGG | - | chr5.4:51225442-51225461 | MS.gene050029:intron | 40.0% | |
| TGACCATATGTCAGCTGATA+TGG | - | chr5.4:51225581-51225600 | MS.gene050029:intron | 40.0% | |
| TGAGAAATTGACCTTACCTC+AGG | + | chr5.4:51224975-51224994 | None:intergenic | 40.0% | |
| TGCACCTGATGATCAAATTC+CGG | + | chr5.4:51225840-51225859 | None:intergenic | 40.0% | |
| TGGTGAGGTATGTGAAACTT+TGG | + | chr5.4:51226566-51226585 | None:intergenic | 40.0% | |
| TTGAGATCGAATGACCAAGA+TGG | + | chr5.4:51226336-51226355 | None:intergenic | 40.0% | |
| TTGTTTACTGCTTGGGATTG+TGG | - | chr5.4:51224551-51224570 | MS.gene050029:CDS | 40.0% | |
| ! | ACAAACACAGAAAGTACACG+AGG | + | chr5.4:51225654-51225673 | None:intergenic | 40.0% |
| ! | AGGCTTTGTGCTTTCTTTCA+CGG | + | chr5.4:51225775-51225794 | None:intergenic | 40.0% |
| ! | CATGATCAGTTGAGAAGTAC+TGG | + | chr5.4:51225235-51225254 | None:intergenic | 40.0% |
| ! | GAGCAATCTGAAGTTGTTTC+TGG | - | chr5.4:51224506-51224525 | MS.gene050029:CDS | 40.0% |
| ! | GCTAATGGACAAGCATTAGT+AGG | + | chr5.4:51225115-51225134 | None:intergenic | 40.0% |
| ! | TTACATGATGGGACAATCAG+AGG | + | chr5.4:51225137-51225156 | None:intergenic | 40.0% |
| !! | ACGAGGTATTGTGAGCAATA+AGG | + | chr5.4:51225637-51225656 | None:intergenic | 40.0% |
| ACAGACCATTCATTCCAACG+AGG | - | chr5.4:51226175-51226194 | MS.gene050029:intron | 45.0% | |
| ATGGGACAATCAGAGGCTAA+TGG | + | chr5.4:51225130-51225149 | None:intergenic | 45.0% | |
| CTACTGATGAACCTGAGGTA+AGG | - | chr5.4:51224961-51224980 | MS.gene050029:CDS | 45.0% | |
| GCACCTGATGATCAAATTCC+GGG | + | chr5.4:51225839-51225858 | None:intergenic | 45.0% | |
| TCACATCACATGTGTCGTGT+CGG | + | chr5.4:51224829-51224848 | None:intergenic | 45.0% | |
| TCAGGTTCATCAGTAGTCCA+TGG | + | chr5.4:51224957-51224976 | None:intergenic | 45.0% | |
| TCCTCTTCAGCCAACTGTAA+GGG | + | chr5.4:51226096-51226115 | None:intergenic | 45.0% | |
| TCTCCTTGCCATGTTATGCT+AGG | + | chr5.4:51225448-51225467 | None:intergenic | 45.0% | |
| TGGCTGAAGAGGAAGAGATT+AGG | - | chr5.4:51226103-51226122 | MS.gene050029:intron | 45.0% | |
| TTCCTCTTCAGCCAACTGTA+AGG | + | chr5.4:51226097-51226116 | None:intergenic | 45.0% | |
| TTTGTGCTTTCTTTCACGGG+AGG | + | chr5.4:51225771-51225790 | None:intergenic | 45.0% | |
| ! | ATGGACTACTGATGAACCTG+AGG | - | chr5.4:51224956-51224975 | MS.gene050029:CDS | 45.0% |
| ! | GGCTTTGTGCTTTCTTTCAC+GGG | + | chr5.4:51225774-51225793 | None:intergenic | 45.0% |
| ! | TTTTGTGCAGTGTGTGTAGC+AGG | - | chr5.4:51224706-51224725 | MS.gene050029:intron | 45.0% |
| ACTGCTTGGGATTGTGGAAG+TGG | - | chr5.4:51224557-51224576 | MS.gene050029:CDS | 50.0% | |
| GGGATTGTGGAAGTGGAAGA+AGG | - | chr5.4:51224564-51224583 | MS.gene050029:CDS | 50.0% | |
| GTGTGTAGCAGGAACTCTTC+TGG | - | chr5.4:51224717-51224736 | MS.gene050029:intron | 50.0% | |
| TCCCTTACAGTTGGCTGAAG+AGG | - | chr5.4:51226092-51226111 | MS.gene050029:intron | 50.0% | |
| TCGCCCGGAATTTGATCATC+AGG | - | chr5.4:51225833-51225852 | MS.gene050029:intron | 50.0% | |
| TGTAGCAGGAACTCTTCTGG+TGG | - | chr5.4:51224720-51224739 | MS.gene050029:intron | 50.0% | |
| TTTGAGGGCAATTGATCGCC+CGG | - | chr5.4:51225818-51225837 | MS.gene050029:intron | 50.0% | |
| !! | TAAGGCATTGGCTGCGCTTT+AGG | + | chr5.4:51226150-51226169 | None:intergenic | 50.0% |
| ACATGTGTCGTGTCGGACAC+CGG | + | chr5.4:51224822-51224841 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 51224504 | 51226646 | 51224504 | ID=MS.gene050029 |
| chr5.4 | mRNA | 51224504 | 51226646 | 51224504 | ID=MS.gene050029.t1;Parent=MS.gene050029 |
| chr5.4 | exon | 51226565 | 51226646 | 51226565 | ID=MS.gene050029.t1.exon1;Parent=MS.gene050029.t1 |
| chr5.4 | CDS | 51226565 | 51226646 | 51226565 | ID=cds.MS.gene050029.t1;Parent=MS.gene050029.t1 |
| chr5.4 | exon | 51226389 | 51226434 | 51226389 | ID=MS.gene050029.t1.exon2;Parent=MS.gene050029.t1 |
| chr5.4 | CDS | 51226389 | 51226434 | 51226389 | ID=cds.MS.gene050029.t1;Parent=MS.gene050029.t1 |
| chr5.4 | exon | 51225296 | 51225410 | 51225296 | ID=MS.gene050029.t1.exon3;Parent=MS.gene050029.t1 |
| chr5.4 | CDS | 51225296 | 51225410 | 51225296 | ID=cds.MS.gene050029.t1;Parent=MS.gene050029.t1 |
| chr5.4 | exon | 51225154 | 51225213 | 51225154 | ID=MS.gene050029.t1.exon4;Parent=MS.gene050029.t1 |
| chr5.4 | CDS | 51225154 | 51225213 | 51225154 | ID=cds.MS.gene050029.t1;Parent=MS.gene050029.t1 |
| chr5.4 | exon | 51224954 | 51225048 | 51224954 | ID=MS.gene050029.t1.exon5;Parent=MS.gene050029.t1 |
| chr5.4 | CDS | 51224954 | 51225048 | 51224954 | ID=cds.MS.gene050029.t1;Parent=MS.gene050029.t1 |
| chr5.4 | exon | 51224504 | 51224618 | 51224504 | ID=MS.gene050029.t1.exon6;Parent=MS.gene050029.t1 |
| chr5.4 | CDS | 51224504 | 51224618 | 51224504 | ID=cds.MS.gene050029.t1;Parent=MS.gene050029.t1 |
| Gene Sequence |
| Protein sequence |
