Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76241.t1 | XP_013470260.1 | 98.2 | 331 | 6 | 0 | 1 | 331 | 1 | 331 | 3.00E-183 | 651 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76241.t1 | A0A072VS93 | 98.2 | 331 | 6 | 0 | 1 | 331 | 1 | 331 | 2.2e-183 | 651.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene052239 | MS.gene76241 | -0.809686 | 1.67E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76241.t1 | MTR_1g111960 | 98.187 | 331 | 6 | 0 | 1 | 331 | 1 | 331 | 0.0 | 669 |
| MS.gene76241.t1 | MTR_1g050385 | 59.770 | 348 | 124 | 2 | 1 | 332 | 1 | 348 | 1.32e-151 | 430 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76241.t1 | AT3G54290 | 48.739 | 357 | 140 | 4 | 1 | 327 | 1 | 344 | 1.41e-112 | 331 |
Find 91 sgRNAs with CRISPR-Local
Find 157 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGAGGCGCGGTTTCCGAATT+TGG | 0.161837 | 1.1:+79021844 | MS.gene76241:CDS |
| CATCAAATCTGTTGGTGTTT+TGG | 0.169536 | 1.1:+79022881 | MS.gene76241:CDS |
| GGAGAAGGTGTTGCGGTTTA+TGG | 0.195686 | 1.1:+79021823 | MS.gene76241:CDS |
| TATCCAACCGTCCGTTTATA+CGG | 0.262754 | 1.1:+79021635 | MS.gene76241:CDS |
| TACAAGGCCTCTTGAAAATC+AGG | 0.294709 | 1.1:-79022915 | None:intergenic |
| TTGGTGACGGTGGGCGGCGG+TGG | 0.301202 | 1.1:+79021863 | MS.gene76241:CDS |
| TCTTCACAAATCAGTTTCAT+TGG | 0.312944 | 1.1:+79021700 | MS.gene76241:CDS |
| TCTTTCACTTAACTATCATT+TGG | 0.331758 | 1.1:-79023558 | None:intergenic |
| CCGCCCACCGTCACCAAATT+CGG | 0.342200 | 1.1:-79021857 | None:intergenic |
| TGCTCGCCTCAAGTTATTGC+TGG | 0.359822 | 1.1:+79022947 | MS.gene76241:CDS |
| GGTGGGCGGCGGTGGTGGTG+TGG | 0.365661 | 1.1:+79021871 | MS.gene76241:CDS |
| TGTGAAACGTGGAGGGAAAA+AGG | 0.368154 | 1.1:+79021991 | MS.gene76241:CDS |
| AGTGGATTTACTTCCACTAA+TGG | 0.378349 | 1.1:+79023354 | MS.gene76241:CDS |
| GTGACGGTGGGCGGCGGTGG+TGG | 0.381919 | 1.1:+79021866 | MS.gene76241:CDS |
| AACTCCAATGCCTCCATTAG+TGG | 0.389254 | 1.1:-79023367 | None:intergenic |
| GGGCGGCGGTGGTGGTGTGG+AGG | 0.415226 | 1.1:+79021874 | MS.gene76241:CDS |
| GAAATTCGCGAGAAGCTATT+CGG | 0.416829 | 1.1:+79022054 | MS.gene76241:CDS |
| GTTGGATCCGAAAGTGTTAC+GGG | 0.417848 | 1.1:+79021794 | MS.gene76241:CDS |
| GAAACTCTACGAGATCATTT+CGG | 0.421604 | 1.1:+79021740 | MS.gene76241:CDS |
| CCGCGAACCCGTAACACTTT+CGG | 0.423723 | 1.1:-79021801 | None:intergenic |
| AATTTCCTTATCTCCATCTT+CGG | 0.441143 | 1.1:-79022037 | None:intergenic |
| AGTTGGATCCGAAAGTGTTA+CGG | 0.443569 | 1.1:+79021793 | MS.gene76241:CDS |
| TGAAGAGTGACGTGTCCATC+CGG | 0.447849 | 1.1:-79021770 | None:intergenic |
| CCGAATTTGGTGACGGTGGG+CGG | 0.455678 | 1.1:+79021857 | MS.gene76241:CDS |
| GGAGTTGTTGGAGGTTATGA+TGG | 0.459395 | 1.1:+79022075 | MS.gene76241:CDS |
| TGTGAAGTCGGAGAAATTAA+CGG | 0.460050 | 1.1:+79021580 | MS.gene76241:CDS |
| ACTTCCACTAATGGAGGCAT+TGG | 0.465464 | 1.1:+79023363 | MS.gene76241:CDS |
| TTCTGTGGGGAGTCCGAAGA+TGG | 0.470996 | 1.1:+79022024 | MS.gene76241:CDS |
| CGATCAGCACGATCAAAGAA+AGG | 0.475367 | 1.1:-79022130 | None:intergenic |
| AGGGACCTACCTCTCATGAA+TGG | 0.475641 | 1.1:+79022846 | MS.gene76241:CDS |
| ACATTTCAAGGAAGAGGAAG+TGG | 0.480483 | 1.1:+79023336 | MS.gene76241:CDS |
| GAGAAGCTATTCGGAGTTGT+TGG | 0.486257 | 1.1:+79022063 | MS.gene76241:CDS |
| GGCGGTGGTGGTGTGGAGGA+TGG | 0.494486 | 1.1:+79021878 | MS.gene76241:CDS |
| CAAACAACATTTCAAGGAAG+AGG | 0.495491 | 1.1:+79023330 | MS.gene76241:CDS |
| TGTGGAGGATGGAAAATTGC+CGG | 0.502160 | 1.1:+79021889 | MS.gene76241:CDS |
| AATTTGGTGACGGTGGGCGG+CGG | 0.505401 | 1.1:+79021860 | MS.gene76241:CDS |
| ACTCTCTAAAGCTGCAAAAG+AGG | 0.507660 | 1.1:+79022815 | MS.gene76241:CDS |
| GGGACCTACCTCTCATGAAT+GGG | 0.511931 | 1.1:+79022847 | MS.gene76241:CDS |
| CCGAAAGTGTTACGGGTTCG+CGG | 0.512674 | 1.1:+79021801 | MS.gene76241:CDS |
| TTTCCGAATTTGGTGACGGT+GGG | 0.517929 | 1.1:+79021854 | MS.gene76241:CDS |
| GCAGTGCAAACAACATTTCA+AGG | 0.524181 | 1.1:+79023324 | MS.gene76241:CDS |
| CTCGTCACCGTCACCATCAC+CGG | 0.526092 | 1.1:-79021908 | None:intergenic |
| CGAAAGTGTTACGGGTTCGC+GGG | 0.537233 | 1.1:+79021802 | MS.gene76241:CDS |
| TATGTTGTGGCATGTGGAGA+GGG | 0.538481 | 1.1:+79021946 | MS.gene76241:CDS |
| AAAGAAATCATCAAATCTGT+TGG | 0.539406 | 1.1:+79022873 | MS.gene76241:CDS |
| TTCTTTGATCGTGCTGATCG+AGG | 0.540804 | 1.1:+79022133 | MS.gene76241:CDS |
| CTGCAAAAGAGGAACATGCT+AGG | 0.545050 | 1.1:+79022826 | MS.gene76241:CDS |
| TCGTGATGCTATGAAGTACT+TGG | 0.552466 | 1.1:+79023489 | MS.gene76241:CDS |
| TGCAAAAGAGGAACATGCTA+GGG | 0.553726 | 1.1:+79022827 | MS.gene76241:CDS |
| TGTTACGGGTTCGCGGGAGA+AGG | 0.558314 | 1.1:+79021808 | MS.gene76241:CDS |
| AAGCTATTCGGAGTTGTTGG+AGG | 0.559085 | 1.1:+79022066 | MS.gene76241:CDS |
| AAGGCTGTTGATCCTTCTGT+GGG | 0.559583 | 1.1:+79022010 | MS.gene76241:CDS |
| GGAGTCCGAAGATGGAGATA+AGG | 0.561789 | 1.1:+79022032 | MS.gene76241:CDS |
| AAAGGCTGTTGATCCTTCTG+TGG | 0.562005 | 1.1:+79022009 | MS.gene76241:CDS |
| AGATCATTTCGGATCCGACC+CGG | 0.564462 | 1.1:+79021751 | MS.gene76241:CDS |
| TCTCGTAGAGTTTCAGATGA+AGG | 0.566318 | 1.1:-79021731 | None:intergenic |
| ACAAGGCCTCTTGAAAATCA+GGG | 0.569588 | 1.1:-79022914 | None:intergenic |
| GCGGTTTCCGAATTTGGTGA+CGG | 0.571307 | 1.1:+79021850 | MS.gene76241:CDS |
| GTTTCCGAATTTGGTGACGG+TGG | 0.573026 | 1.1:+79021853 | MS.gene76241:CDS |
| GAAGAGTGACGTGTCCATCC+GGG | 0.576363 | 1.1:-79021769 | None:intergenic |
| TGATCCCATTCATGAGAGGT+AGG | 0.576581 | 1.1:-79022851 | None:intergenic |
| GATCAGCACGATCAAAGAAA+GGG | 0.577300 | 1.1:-79022129 | None:intergenic |
| GAACCGTATAAACGGACGGT+TGG | 0.580668 | 1.1:-79021638 | None:intergenic |
| ATCTTCGGACTCCCCACAGA+AGG | 0.580779 | 1.1:-79022022 | None:intergenic |
| GAAGGTGTTGCGGTTTATGG+AGG | 0.583239 | 1.1:+79021826 | MS.gene76241:CDS |
| GGATGGAAAATTGCCGGTGA+TGG | 0.583628 | 1.1:+79021895 | MS.gene76241:CDS |
| GGACACGTCACTCTTCAAGT+TGG | 0.588350 | 1.1:+79021776 | MS.gene76241:CDS |
| TAAGAGTATGTTGTGGCATG+TGG | 0.595830 | 1.1:+79021940 | MS.gene76241:CDS |
| TATGATGGAACATGCTCGGA+TGG | 0.599363 | 1.1:+79022090 | MS.gene76241:CDS |
| GGATTTACTTCCACTAATGG+AGG | 0.600208 | 1.1:+79023357 | MS.gene76241:CDS |
| GCGAGCAGAAAGATTATACA+AGG | 0.601678 | 1.1:-79022931 | None:intergenic |
| GATCTGATGCATGGAACACA+CGG | 0.611566 | 1.1:+79023430 | MS.gene76241:CDS |
| CATTTCGGATCCGACCCGGA+TGG | 0.625020 | 1.1:+79021755 | MS.gene76241:CDS |
| AGGATCTTGTGAAACGTGGA+GGG | 0.632842 | 1.1:+79021984 | MS.gene76241:CDS |
| GAGGATCTTGTGAAACGTGG+AGG | 0.639878 | 1.1:+79021983 | MS.gene76241:CDS |
| CGGTGATGGTGACGGTGACG+AGG | 0.640427 | 1.1:+79021909 | MS.gene76241:CDS |
| GTATGTTGTGGCATGTGGAG+AGG | 0.640566 | 1.1:+79021945 | MS.gene76241:CDS |
| TCTTTGATCCCATTCATGAG+AGG | 0.644723 | 1.1:-79022855 | None:intergenic |
| TAGACTTTAGCTACGTCGCG+AGG | 0.645767 | 1.1:-79021614 | None:intergenic |
| TGGTGAACCGTATAAACGGA+CGG | 0.648385 | 1.1:-79021642 | None:intergenic |
| AACTTACCAGCAATAACTTG+AGG | 0.649400 | 1.1:-79022953 | None:intergenic |
| AGGTTATGATGGAACATGCT+CGG | 0.651869 | 1.1:+79022086 | MS.gene76241:CDS |
| GTTCGCGGGAGAAGGTGTTG+CGG | 0.658726 | 1.1:+79021816 | MS.gene76241:CDS |
| AAAATTGCCGGTGATGGTGA+CGG | 0.667719 | 1.1:+79021901 | MS.gene76241:CDS |
| GCGGAGGATCTTGTGAAACG+TGG | 0.670820 | 1.1:+79021980 | MS.gene76241:CDS |
| TGCAGCATAAGAGTATGTTG+TGG | 0.678190 | 1.1:+79021933 | MS.gene76241:CDS |
| AGTGACGTGTCCATCCGGGT+CGG | 0.687526 | 1.1:-79021765 | None:intergenic |
| TGTTGCGGTTTATGGAGGCG+CGG | 0.691904 | 1.1:+79021831 | MS.gene76241:CDS |
| AGGCTGTTGATCCTTCTGTG+GGG | 0.744546 | 1.1:+79022011 | MS.gene76241:CDS |
| AAGTACTTCATAGCATCACG+AGG | 0.752222 | 1.1:-79023487 | None:intergenic |
| GAAGTCGGAGAAATTAACGG+CGG | 0.794619 | 1.1:+79021583 | MS.gene76241:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTTTATGTGTTTTTTAAA+TGG | + | chr1.1:79023269-79023288 | MS.gene76241:intron | 10.0% |
| !!! | ATTTTATGTGTTTTTTAAAT+GGG | + | chr1.1:79023270-79023289 | MS.gene76241:intron | 10.0% |
| !!! | CATTAATTAATTTTAATTTC+AGG | + | chr1.1:79022555-79022574 | MS.gene76241:intron | 10.0% |
| !! | AAACACTTATTTGAAAATTA+AGG | - | chr1.1:79022658-79022677 | None:intergenic | 15.0% |
| !! | TTATTAGTAAAAAGAAGAAA+TGG | - | chr1.1:79022162-79022181 | None:intergenic | 15.0% |
| !!! | ATCTTTTTTTTTTTTTGTAG+TGG | - | chr1.1:79022453-79022472 | None:intergenic | 15.0% |
| !!! | GTAAGTAATTTTTTCATTTT+GGG | + | chr1.1:79022685-79022704 | MS.gene76241:intron | 15.0% |
| !!! | TATTAAAGTTTTTTCTTGAA+GGG | + | chr1.1:79023458-79023477 | MS.gene76241:CDS | 15.0% |
| !!! | TGTAAGTAATTTTTTCATTT+TGG | + | chr1.1:79022684-79022703 | MS.gene76241:intron | 15.0% |
| !!! | TTATTAAAGTTTTTTCTTGA+AGG | + | chr1.1:79023457-79023476 | MS.gene76241:CDS | 15.0% |
| !! | ATTAACTGTAAATATGCTAT+TGG | - | chr1.1:79023236-79023255 | None:intergenic | 20.0% |
| !! | TTCATTTAGTACTTAATTGA+TGG | - | chr1.1:79022186-79022205 | None:intergenic | 20.0% |
| !!! | ATTTGTTATGTAAAAGAGAT+GGG | + | chr1.1:79022521-79022540 | MS.gene76241:intron | 20.0% |
| !!! | TATTTGTTATGTAAAAGAGA+TGG | + | chr1.1:79022520-79022539 | MS.gene76241:intron | 20.0% |
| !!! | TGTATGTGTTATGTTTTAAT+TGG | + | chr1.1:79022488-79022507 | MS.gene76241:intron | 20.0% |
| !!! | TGTGCATTTATTTATCTTTT+GGG | + | chr1.1:79022778-79022797 | MS.gene76241:intron | 20.0% |
| !!! | TTTTTTTTTTTTGTAGTGGT+CGG | - | chr1.1:79022449-79022468 | None:intergenic | 20.0% |
| ! | AAAGAAATCATCAAATCTGT+TGG | + | chr1.1:79022873-79022892 | MS.gene76241:CDS | 25.0% |
| ! | ACAATGCATAAAAATATGCA+AGG | + | chr1.1:79022408-79022427 | MS.gene76241:intron | 25.0% |
| ! | ACAGATTAACAAAGAAATCA+AGG | - | chr1.1:79023296-79023315 | None:intergenic | 25.0% |
| ! | TCATATACTTTATCGACAAA+AGG | - | chr1.1:79022230-79022249 | None:intergenic | 25.0% |
| ! | TCTCACTTAACTCAATTTAT+AGG | + | chr1.1:79023127-79023146 | MS.gene76241:intron | 25.0% |
| !! | GTGTGCATTTATTTATCTTT+TGG | + | chr1.1:79022777-79022796 | MS.gene76241:intron | 25.0% |
| !! | TAAGTAGTGAGAATACTTTT+TGG | - | chr1.1:79021665-79021684 | None:intergenic | 25.0% |
| !!! | TTTTTTTTTTTGTAGTGGTC+GGG | - | chr1.1:79022448-79022467 | None:intergenic | 25.0% |
| AATTTCCTTATCTCCATCTT+CGG | - | chr1.1:79022040-79022059 | None:intergenic | 30.0% | |
| TCTTCACAAATCAGTTTCAT+TGG | + | chr1.1:79021700-79021719 | MS.gene76241:CDS | 30.0% | |
| TCTTTGTTAATCTGTCATCA+GGG | + | chr1.1:79023301-79023320 | MS.gene76241:intron | 30.0% | |
| TTCTTTGTTAATCTGTCATC+AGG | + | chr1.1:79023300-79023319 | MS.gene76241:intron | 30.0% | |
| !! | TCTTTTGGGAAAAAAAATGC+AGG | + | chr1.1:79022792-79022811 | MS.gene76241:intron | 30.0% |
| !! | TTGTCTTTGAAGTAATGCTA+CGG | + | chr1.1:79022752-79022771 | MS.gene76241:intron | 30.0% |
| !! | TTTTTGGTGAACCGTATAAA+CGG | - | chr1.1:79021649-79021668 | None:intergenic | 30.0% |
| !!! | GCATCGATTCTATTTTATCT+TGG | - | chr1.1:79023537-79023556 | None:intergenic | 30.0% |
| !!! | TTCATTTTGGGTAACTTGTT+TGG | + | chr1.1:79022697-79022716 | MS.gene76241:intron | 30.0% |
| !!! | TTTTTTTTTTGTAGTGGTCG+GGG | - | chr1.1:79022447-79022466 | None:intergenic | 30.0% |
| AACTTACCAGCAATAACTTG+AGG | - | chr1.1:79022956-79022975 | None:intergenic | 35.0% | |
| AATTTCAGGGTCTTACTAAC+CGG | + | chr1.1:79022569-79022588 | MS.gene76241:intron | 35.0% | |
| ATAAAAATATGCAAGGTCCG+GGG | + | chr1.1:79022415-79022434 | MS.gene76241:intron | 35.0% | |
| CAAACAACATTTCAAGGAAG+AGG | + | chr1.1:79023330-79023349 | MS.gene76241:CDS | 35.0% | |
| CATAAAAATATGCAAGGTCC+GGG | + | chr1.1:79022414-79022433 | MS.gene76241:intron | 35.0% | |
| CTTTGTTAATCTGTCATCAG+GGG | + | chr1.1:79023302-79023321 | MS.gene76241:intron | 35.0% | |
| GAAACTCTACGAGATCATTT+CGG | + | chr1.1:79021740-79021759 | MS.gene76241:CDS | 35.0% | |
| GCATAAAAATATGCAAGGTC+CGG | + | chr1.1:79022413-79022432 | MS.gene76241:intron | 35.0% | |
| TGTGAAGTCGGAGAAATTAA+CGG | + | chr1.1:79021580-79021599 | MS.gene76241:CDS | 35.0% | |
| ! | AGTGGATTTACTTCCACTAA+TGG | + | chr1.1:79023354-79023373 | MS.gene76241:CDS | 35.0% |
| ! | CTCTTAGGAATAGCTCATTT+TGG | + | chr1.1:79022979-79022998 | MS.gene76241:intron | 35.0% |
| !! | AACCGGTGCTAGAAAATTTT+AGG | + | chr1.1:79022586-79022605 | MS.gene76241:intron | 35.0% |
| !! | ACCCTAAAATTTTCTAGCAC+CGG | - | chr1.1:79022591-79022610 | None:intergenic | 35.0% |
| !! | ACCGGTGCTAGAAAATTTTA+GGG | + | chr1.1:79022587-79022606 | MS.gene76241:intron | 35.0% |
| !! | CATCAAATCTGTTGGTGTTT+TGG | + | chr1.1:79022881-79022900 | MS.gene76241:CDS | 35.0% |
| !!! | CAATGTTTTGATCTGATGCA+TGG | + | chr1.1:79023421-79023440 | MS.gene76241:CDS | 35.0% |
| !!! | TTTTGGGTAACTTGTTTGGT+AGG | + | chr1.1:79022701-79022720 | MS.gene76241:intron | 35.0% |
| AAGTACTTCATAGCATCACG+AGG | - | chr1.1:79023490-79023509 | None:intergenic | 40.0% | |
| AATGCTAAACAGTGCCTTGA+GGG | - | chr1.1:79022633-79022652 | None:intergenic | 40.0% | |
| ACAAGGCCTCTTGAAAATCA+GGG | - | chr1.1:79022917-79022936 | None:intergenic | 40.0% | |
| ACATTTCAAGGAAGAGGAAG+TGG | + | chr1.1:79023336-79023355 | MS.gene76241:CDS | 40.0% | |
| GAAATTCGCGAGAAGCTATT+CGG | + | chr1.1:79022054-79022073 | MS.gene76241:CDS | 40.0% | |
| GATCAGCACGATCAAAGAAA+GGG | - | chr1.1:79022132-79022151 | None:intergenic | 40.0% | |
| GCAGTGCAAACAACATTTCA+AGG | + | chr1.1:79023324-79023343 | MS.gene76241:CDS | 40.0% | |
| GCGAGCAGAAAGATTATACA+AGG | - | chr1.1:79022934-79022953 | None:intergenic | 40.0% | |
| GGATTTACTTCCACTAATGG+AGG | + | chr1.1:79023357-79023376 | MS.gene76241:CDS | 40.0% | |
| TACAAGGCCTCTTGAAAATC+AGG | - | chr1.1:79022918-79022937 | None:intergenic | 40.0% | |
| TATCCAACCGTCCGTTTATA+CGG | + | chr1.1:79021635-79021654 | MS.gene76241:CDS | 40.0% | |
| TCTAAGAGCGGTTCAAATCA+AGG | - | chr1.1:79023204-79023223 | None:intergenic | 40.0% | |
| TCTCGTAGAGTTTCAGATGA+AGG | - | chr1.1:79021734-79021753 | None:intergenic | 40.0% | |
| TCTTTGATCCCATTCATGAG+AGG | - | chr1.1:79022858-79022877 | None:intergenic | 40.0% | |
| TGCAAAAGAGGAACATGCTA+GGG | + | chr1.1:79022827-79022846 | MS.gene76241:CDS | 40.0% | |
| ! | AGGTTATGATGGAACATGCT+CGG | + | chr1.1:79022086-79022105 | MS.gene76241:CDS | 40.0% |
| ! | GGGAAACTGTTTTGTGAAGT+CGG | + | chr1.1:79021568-79021587 | MS.gene76241:CDS | 40.0% |
| ! | TAAGAGTATGTTGTGGCATG+TGG | + | chr1.1:79021940-79021959 | MS.gene76241:CDS | 40.0% |
| ! | TCGTGATGCTATGAAGTACT+TGG | + | chr1.1:79023489-79023508 | MS.gene76241:CDS | 40.0% |
| ! | TGCAGCATAAGAGTATGTTG+TGG | + | chr1.1:79021933-79021952 | MS.gene76241:CDS | 40.0% |
| !! | ACTCTCTAAAGCTGCAAAAG+AGG | + | chr1.1:79022815-79022834 | MS.gene76241:CDS | 40.0% |
| !! | AGTTGGATCCGAAAGTGTTA+CGG | + | chr1.1:79021793-79021812 | MS.gene76241:CDS | 40.0% |
| !! | TGGCAGTAATGTTCTAAGAG+CGG | - | chr1.1:79023216-79023235 | None:intergenic | 40.0% |
| AAAGGCTGTTGATCCTTCTG+TGG | + | chr1.1:79022009-79022028 | MS.gene76241:CDS | 45.0% | |
| AACTCCAATGCCTCCATTAG+TGG | - | chr1.1:79023370-79023389 | None:intergenic | 45.0% | |
| AACTCTGAGCTTAGCTCAGA+TGG | + | chr1.1:79022381-79022400 | MS.gene76241:intron | 45.0% | |
| AAGAGCGGTTCAAATCAAGG+AGG | - | chr1.1:79023201-79023220 | None:intergenic | 45.0% | |
| AAGCTATTCGGAGTTGTTGG+AGG | + | chr1.1:79022066-79022085 | MS.gene76241:CDS | 45.0% | |
| AAGGCTGTTGATCCTTCTGT+GGG | + | chr1.1:79022010-79022029 | MS.gene76241:CDS | 45.0% | |
| ACGTGCGGTGCATACAAAAA+TGG | + | chr1.1:79023077-79023096 | MS.gene76241:intron | 45.0% | |
| AGGATCTTGTGAAACGTGGA+GGG | + | chr1.1:79021984-79022003 | MS.gene76241:CDS | 45.0% | |
| CGATCAGCACGATCAAAGAA+AGG | - | chr1.1:79022133-79022152 | None:intergenic | 45.0% | |
| CTGCAAAAGAGGAACATGCT+AGG | + | chr1.1:79022826-79022845 | MS.gene76241:CDS | 45.0% | |
| CTTCCTTTCTCAAAGCCTAG+TGG | - | chr1.1:79022727-79022746 | None:intergenic | 45.0% | |
| GAAGTCGGAGAAATTAACGG+CGG | + | chr1.1:79021583-79021602 | MS.gene76241:CDS | 45.0% | |
| GAATGCTAAACAGTGCCTTG+AGG | - | chr1.1:79022634-79022653 | None:intergenic | 45.0% | |
| GAGAAGCTATTCGGAGTTGT+TGG | + | chr1.1:79022063-79022082 | MS.gene76241:CDS | 45.0% | |
| GATCTGATGCATGGAACACA+CGG | + | chr1.1:79023430-79023449 | MS.gene76241:CDS | 45.0% | |
| GGAGTTGTTGGAGGTTATGA+TGG | + | chr1.1:79022075-79022094 | MS.gene76241:CDS | 45.0% | |
| GTTGATATCACATGCACGTG+CGG | + | chr1.1:79023062-79023081 | MS.gene76241:intron | 45.0% | |
| TAACAAGTGTCATGCCCTCA+AGG | + | chr1.1:79022616-79022635 | MS.gene76241:intron | 45.0% | |
| TATGTTGTGGCATGTGGAGA+GGG | + | chr1.1:79021946-79021965 | MS.gene76241:CDS | 45.0% | |
| TGATCCCATTCATGAGAGGT+AGG | - | chr1.1:79022854-79022873 | None:intergenic | 45.0% | |
| TGCTGGTAAGTTCAGCTCTT+AGG | + | chr1.1:79022964-79022983 | MS.gene76241:intron | 45.0% | |
| TGGTGAACCGTATAAACGGA+CGG | - | chr1.1:79021645-79021664 | None:intergenic | 45.0% | |
| TGTGAAACGTGGAGGGAAAA+AGG | + | chr1.1:79021991-79022010 | MS.gene76241:CDS | 45.0% | |
| TGTGGAGGATGGAAAATTGC+CGG | + | chr1.1:79021889-79021908 | MS.gene76241:CDS | 45.0% | |
| ! | AAAATTGCCGGTGATGGTGA+CGG | + | chr1.1:79021901-79021920 | MS.gene76241:CDS | 45.0% |
| ! | AACTTGTTTGGTAGGCCACT+AGG | + | chr1.1:79022709-79022728 | MS.gene76241:intron | 45.0% |
| ! | ACTTCCACTAATGGAGGCAT+TGG | + | chr1.1:79023363-79023382 | MS.gene76241:CDS | 45.0% |
| ! | TATGATGGAACATGCTCGGA+TGG | + | chr1.1:79022090-79022109 | MS.gene76241:CDS | 45.0% |
| ! | TTCTTTGATCGTGCTGATCG+AGG | + | chr1.1:79022133-79022152 | MS.gene76241:CDS | 45.0% |
| !! | GTTGGATCCGAAAGTGTTAC+GGG | + | chr1.1:79021794-79021813 | MS.gene76241:CDS | 45.0% |
| !! | TCTGTTGGTGTTTTGGACTC+TGG | + | chr1.1:79022888-79022907 | MS.gene76241:CDS | 45.0% |
| !! | TGGAAGCCCTGATTTTCAAG+AGG | + | chr1.1:79022908-79022927 | MS.gene76241:CDS | 45.0% |
| !! | TTTCCGAATTTGGTGACGGT+GGG | + | chr1.1:79021854-79021873 | MS.gene76241:CDS | 45.0% |
| !!! | ATTAATTAATTTTAATTTCA+GGG | + | chr1.1:79022556-79022575 | MS.gene76241:intron | 5.0% |
| AGATCATTTCGGATCCGACC+CGG | + | chr1.1:79021751-79021770 | MS.gene76241:CDS | 50.0% | |
| AGGCTGTTGATCCTTCTGTG+GGG | + | chr1.1:79022011-79022030 | MS.gene76241:CDS | 50.0% | |
| AGGGACCTACCTCTCATGAA+TGG | + | chr1.1:79022846-79022865 | MS.gene76241:CDS | 50.0% | |
| CTGAGCTTAGCTCAGATGGT+TGG | + | chr1.1:79022385-79022404 | MS.gene76241:intron | 50.0% | |
| GAACCGTATAAACGGACGGT+TGG | - | chr1.1:79021641-79021660 | None:intergenic | 50.0% | |
| GAGGATCTTGTGAAACGTGG+AGG | + | chr1.1:79021983-79022002 | MS.gene76241:CDS | 50.0% | |
| GGACACGTCACTCTTCAAGT+TGG | + | chr1.1:79021776-79021795 | MS.gene76241:CDS | 50.0% | |
| GGAGTCCGAAGATGGAGATA+AGG | + | chr1.1:79022032-79022051 | MS.gene76241:CDS | 50.0% | |
| GGATGGAAAATTGCCGGTGA+TGG | + | chr1.1:79021895-79021914 | MS.gene76241:CDS | 50.0% | |
| GGGACCTACCTCTCATGAAT+GGG | + | chr1.1:79022847-79022866 | MS.gene76241:CDS | 50.0% | |
| GTATGTTGTGGCATGTGGAG+AGG | + | chr1.1:79021945-79021964 | MS.gene76241:CDS | 50.0% | |
| TAGACTTTAGCTACGTCGCG+AGG | - | chr1.1:79021617-79021636 | None:intergenic | 50.0% | |
| TGAAGAGTGACGTGTCCATC+CGG | - | chr1.1:79021773-79021792 | None:intergenic | 50.0% | |
| TGCTCGCCTCAAGTTATTGC+TGG | + | chr1.1:79022947-79022966 | MS.gene76241:CDS | 50.0% | |
| ! | GCGGTTTCCGAATTTGGTGA+CGG | + | chr1.1:79021850-79021869 | MS.gene76241:CDS | 50.0% |
| !! | AGGCCACTAGGCTTTGAGAA+AGG | + | chr1.1:79022721-79022740 | MS.gene76241:intron | 50.0% |
| !! | GAAGGTGTTGCGGTTTATGG+AGG | + | chr1.1:79021826-79021845 | MS.gene76241:CDS | 50.0% |
| !! | GGAGAAGGTGTTGCGGTTTA+TGG | + | chr1.1:79021823-79021842 | MS.gene76241:CDS | 50.0% |
| !! | GTTTCCGAATTTGGTGACGG+TGG | + | chr1.1:79021853-79021872 | MS.gene76241:CDS | 50.0% |
| !!! | ATGTGGAGAGGGTTTTGAGG+TGG | + | chr1.1:79021957-79021976 | MS.gene76241:CDS | 50.0% |
| !!! | TGTGGAGAGGGTTTTGAGGT+GGG | + | chr1.1:79021958-79021977 | MS.gene76241:CDS | 50.0% |
| ATCTTCGGACTCCCCACAGA+AGG | - | chr1.1:79022025-79022044 | None:intergenic | 55.0% | |
| CCGCGAACCCGTAACACTTT+CGG | - | chr1.1:79021804-79021823 | None:intergenic | 55.0% | |
| GAAGAGTGACGTGTCCATCC+GGG | - | chr1.1:79021772-79021791 | None:intergenic | 55.0% | |
| GCGGAGGATCTTGTGAAACG+TGG | + | chr1.1:79021980-79021999 | MS.gene76241:CDS | 55.0% | |
| TGTTGCGGTTTATGGAGGCG+CGG | + | chr1.1:79021831-79021850 | MS.gene76241:CDS | 55.0% | |
| TTCTGTGGGGAGTCCGAAGA+TGG | + | chr1.1:79022024-79022043 | MS.gene76241:CDS | 55.0% | |
| ! | GGCATGTGGAGAGGGTTTTG+AGG | + | chr1.1:79021954-79021973 | MS.gene76241:CDS | 55.0% |
| !! | CCGAAAGTGTTACGGGTTCG+CGG | + | chr1.1:79021801-79021820 | MS.gene76241:CDS | 55.0% |
| !! | CGAAAGTGTTACGGGTTCGC+GGG | + | chr1.1:79021802-79021821 | MS.gene76241:CDS | 55.0% |
| AGTGACGTGTCCATCCGGGT+CGG | - | chr1.1:79021768-79021787 | None:intergenic | 60.0% | |
| AGTGGTCGGGGTTTGAACCC+CGG | - | chr1.1:79022435-79022454 | None:intergenic | 60.0% | |
| CATTTCGGATCCGACCCGGA+TGG | + | chr1.1:79021755-79021774 | MS.gene76241:CDS | 60.0% | |
| CCGCCCACCGTCACCAAATT+CGG | - | chr1.1:79021860-79021879 | None:intergenic | 60.0% | |
| CTCGTCACCGTCACCATCAC+CGG | - | chr1.1:79021911-79021930 | None:intergenic | 60.0% | |
| TGTTACGGGTTCGCGGGAGA+AGG | + | chr1.1:79021808-79021827 | MS.gene76241:CDS | 60.0% | |
| ! | GGAGGCGCGGTTTCCGAATT+TGG | + | chr1.1:79021844-79021863 | MS.gene76241:CDS | 60.0% |
| !! | AATTTGGTGACGGTGGGCGG+CGG | + | chr1.1:79021860-79021879 | MS.gene76241:CDS | 60.0% |
| !! | CCGAATTTGGTGACGGTGGG+CGG | + | chr1.1:79021857-79021876 | MS.gene76241:CDS | 60.0% |
| !! | GTTCGCGGGAGAAGGTGTTG+CGG | + | chr1.1:79021816-79021835 | MS.gene76241:CDS | 60.0% |
| !!! | GGAGAGGGTTTTGAGGTGGG+CGG | + | chr1.1:79021961-79021980 | MS.gene76241:CDS | 60.0% |
| !! | CGGTGATGGTGACGGTGACG+AGG | + | chr1.1:79021909-79021928 | MS.gene76241:CDS | 65.0% |
| !!! | GAGGGTTTTGAGGTGGGCGG+AGG | + | chr1.1:79021964-79021983 | MS.gene76241:CDS | 65.0% |
| ! | GGCGGTGGTGGTGTGGAGGA+TGG | + | chr1.1:79021878-79021897 | MS.gene76241:CDS | 70.0% |
| !! | TTGGTGACGGTGGGCGGCGG+TGG | + | chr1.1:79021863-79021882 | MS.gene76241:CDS | 75.0% |
| ! | GTGACGGTGGGCGGCGGTGG+TGG | + | chr1.1:79021866-79021885 | MS.gene76241:CDS | 80.0% |
| !! | GGGCGGCGGTGGTGGTGTGG+AGG | + | chr1.1:79021874-79021893 | MS.gene76241:CDS | 80.0% |
| !! | GGTGGGCGGCGGTGGTGGTG+TGG | + | chr1.1:79021871-79021890 | MS.gene76241:CDS | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 79021566 | 79023576 | 79021566 | ID=MS.gene76241 |
| chr1.1 | mRNA | 79021566 | 79023576 | 79021566 | ID=MS.gene76241.t1;Parent=MS.gene76241 |
| chr1.1 | exon | 79021566 | 79022154 | 79021566 | ID=MS.gene76241.t1.exon1;Parent=MS.gene76241.t1 |
| chr1.1 | CDS | 79021566 | 79022154 | 79021566 | ID=cds.MS.gene76241.t1;Parent=MS.gene76241.t1 |
| chr1.1 | exon | 79022814 | 79022968 | 79022814 | ID=MS.gene76241.t1.exon2;Parent=MS.gene76241.t1 |
| chr1.1 | CDS | 79022814 | 79022968 | 79022814 | ID=cds.MS.gene76241.t1;Parent=MS.gene76241.t1 |
| chr1.1 | exon | 79023322 | 79023576 | 79023322 | ID=MS.gene76241.t1.exon3;Parent=MS.gene76241.t1 |
| chr1.1 | CDS | 79023322 | 79023576 | 79023322 | ID=cds.MS.gene76241.t1;Parent=MS.gene76241.t1 |
| Gene Sequence |
| Protein sequence |
