AlfalfaGEDB | MS.gene76241

M. sativa cultivar XinJiangDaYe / MS.gene76241

KEGG: -
GO: -
PFAM: PF01814.26

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene76241.t1	XP_013470260.1	98.2	331	6	0	1	331	1	331	3.00E-183	651

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene76241.t1	A0A072VS93	98.2	331	6	0	1	331	1	331	2.2e-183	651.0

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene052239	MS.gene76241	-0.809686	1.67E-50	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene76241.t1	MTR_1g111960	98.187	331	6	0	1	331	1	331	0.0	669
MS.gene76241.t1	MTR_1g050385	59.770	348	124	2	1	332	1	348	1.32e-151	430

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene76241.t1	AT3G54290	48.739	357	140	4	1	327	1	344	1.41e-112	331

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Find 91 sgRNAs with CRISPR-Local

Find 157 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATTGCCGGTGATGGTGA+CGG	0.667719	1.1:+79021901	MS.gene76241:CDS
AAAGAAATCATCAAATCTGT+TGG	0.539406	1.1:+79022873	MS.gene76241:CDS
AAAGGCTGTTGATCCTTCTG+TGG	0.562005	1.1:+79022009	MS.gene76241:CDS
AACTCCAATGCCTCCATTAG+TGG	0.389254	1.1:-79023367	None:intergenic
AACTTACCAGCAATAACTTG+AGG	0.649400	1.1:-79022953	None:intergenic
AAGCTATTCGGAGTTGTTGG+AGG	0.559085	1.1:+79022066	MS.gene76241:CDS
AAGGCTGTTGATCCTTCTGT+GGG	0.559583	1.1:+79022010	MS.gene76241:CDS
AAGTACTTCATAGCATCACG+AGG	0.752222	1.1:-79023487	None:intergenic
AATTTCCTTATCTCCATCTT+CGG	0.441143	1.1:-79022037	None:intergenic
AATTTGGTGACGGTGGGCGG+CGG	0.505401	1.1:+79021860	MS.gene76241:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATTTCCTTATCTCCATCTT+CGG	-	chr1.1:79022040-79022059	None:intergenic	30.0%
TCTTCACAAATCAGTTTCAT+TGG	+	chr1.1:79021700-79021719	MS.gene76241:CDS	30.0%
TCTTTGTTAATCTGTCATCA+GGG	+	chr1.1:79023301-79023320	MS.gene76241:intron	30.0%
TTCTTTGTTAATCTGTCATC+AGG	+	chr1.1:79023300-79023319	MS.gene76241:intron	30.0%
AACTTACCAGCAATAACTTG+AGG	-	chr1.1:79022956-79022975	None:intergenic	35.0%
AATTTCAGGGTCTTACTAAC+CGG	+	chr1.1:79022569-79022588	MS.gene76241:intron	35.0%
ATAAAAATATGCAAGGTCCG+GGG	+	chr1.1:79022415-79022434	MS.gene76241:intron	35.0%
CAAACAACATTTCAAGGAAG+AGG	+	chr1.1:79023330-79023349	MS.gene76241:CDS	35.0%
CATAAAAATATGCAAGGTCC+GGG	+	chr1.1:79022414-79022433	MS.gene76241:intron	35.0%
CTTTGTTAATCTGTCATCAG+GGG	+	chr1.1:79023302-79023321	MS.gene76241:intron	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.1	gene	79021566	79023576	79021566	ID=MS.gene76241
chr1.1	mRNA	79021566	79023576	79021566	ID=MS.gene76241.t1;Parent=MS.gene76241
chr1.1	exon	79021566	79022154	79021566	ID=MS.gene76241.t1.exon1;Parent=MS.gene76241.t1
chr1.1	CDS	79021566	79022154	79021566	ID=cds.MS.gene76241.t1;Parent=MS.gene76241.t1
chr1.1	exon	79022814	79022968	79022814	ID=MS.gene76241.t1.exon2;Parent=MS.gene76241.t1
chr1.1	CDS	79022814	79022968	79022814	ID=cds.MS.gene76241.t1;Parent=MS.gene76241.t1
chr1.1	exon	79023322	79023576	79023322	ID=MS.gene76241.t1.exon3;Parent=MS.gene76241.t1
chr1.1	CDS	79023322	79023576	79023322	ID=cds.MS.gene76241.t1;Parent=MS.gene76241.t1

Gene Sequence

>MS.gene76241

ATGGGAAACTGTTTTGTGAAGTCGGAGAAATTAACGGCGGAGATTATACCTCGCGACGTAGCTAAAGTCTATCCAACCGTCCGTTTATACGGTTCACCAAAAAGTATTCTCACTACTTACATTCGTTTCGCTCTTCTTCACAAATCAGTTTCATTGGATTTCGTTCCTTCATCTGAAACTCTACGAGATCATTTCGGATCCGACCCGGATGGACACGTCACTCTTCAAGTTGGATCCGAAAGTGTTACGGGTTCGCGGGAGAAGGTGTTGCGGTTTATGGAGGCGCGGTTTCCGAATTTGGTGACGGTGGGCGGCGGTGGTGGTGTGGAGGATGGAAAATTGCCGGTGATGGTGACGGTGACGAGGTTGCAGCATAAGAGTATGTTGTGGCATGTGGAGAGGGTTTTGAGGTGGGCGGAGGATCTTGTGAAACGTGGAGGGAAAAAGGCTGTTGATCCTTCTGTGGGGAGTCCGAAGATGGAGATAAGGAAATTCGCGAGAAGCTATTCGGAGTTGTTGGAGGTTATGATGGAACATGCTCGGATGGAAGAGACTCTTCTCTTCCCTTTCTTTGATCGTGCTGATCGAGGTAACCATTTCTTCTTTTTACTAATAAACCATCAATTAAGTACTAAATGAACTATATGAAATTGAAATTCGTCCTTTTGTCGATAAAGTATATGAAATTTGTAAATTTAGTTAACATCTTCATAGCATAGATAACTGAATAATAAATTGAACAAATTGTGATAGTTTTTAATTTTGTATAGATTTTGTTATATTTTATCTTTTATGTGAAATAAATTTTGCAGAATAACTCTGAGCTTAGCTCAGATGGTTGGACAATGCATAAAAATATGCAAGGTCCGGGGTTCAAACCCCGACCACTACAAAAAAAAAAAAAGATTTATTCTGTATGTGTTGTATGTGTTATGTTTTAATTGGTTTTGTTTGTATTTGTTATGTAAAAGAGATGGGCATTTTTTGTACATTAATTAATTTTAATTTCAGGGTCTTACTAACCGGTGCTAGAAAATTTTAGGGTCATGCTAACAAGTGTCATGCCCTCAAGGCACTGTTTAGCATTCTCCTTAATTTTCAAATAAGTGTTTTTGTTCTGTAAGTAATTTTTTCATTTTGGGTAACTTGTTTGGTAGGCCACTAGGCTTTGAGAAAGGAAGTTTACTTGTCTTTGAAGTAATGCTACGGATGTGTGCATTTATTTATCTTTTGGGAAAAAAAATGCAGGACTCTCTAAAGCTGCAAAAGAGGAACATGCTAGGGACCTACCTCTCATGAATGGGATCAAAGAAATCATCAAATCTGTTGGTGTTTTGGACTCTGGAAGCCCTGATTTTCAAGAGGCCTTGTATAATCTTTCTGCTCGCCTCAAGTTATTGCTGGTAAGTTCAGCTCTTAGGAATAGCTCATTTTGGTTGAATTCTCATTTTAGAGTGTAAAGTTAGTAATTTCAATCATTGACAAATAAATTCATAGTTGATATCACATGCACGTGCGGTGCATACAAAAATGGCGACATGAATAAAGTAACTATTAGTTTTCTCACTTAACTCAATTTATAGGAGTTTGATGTTCTCGATTTCGTTGTTATAATTTCGATTAGATTTTGTACCTCCTTGATTTGAACCGCTCTTAGAACATTACTGCCAATAGCATATTTACAGTTAATTTGCGATCTTCTGAATTTTATGTGTTTTTTAAATGGGCCTTGATTTCTTTGTTAATCTGTCATCAGGGGCAGTGCAAACAACATTTCAAGGAAGAGGAAGTGGATTTACTTCCACTAATGGAGGCATTGGAGTTAAGCAAAGATCAAGAAGAGACTGCACTAGATCAATGTTTTGATCTGATGCATGGAACACACGGTCGTTTATTAAAGTTTTTTCTTGAAGGGCTTCAACCTCGTGATGCTATGAAGTACTTGGACTTGATTAGCATGTGTAGTAACCAAGATAAAATAGAATCGATGCTCCAAATGATAGTTAAGTGA

Protein sequence

>MS.gene76241.t1

MGNCFVKSEKLTAEIIPRDVAKVYPTVRLYGSPKSILTTYIRFALLHKSVSLDFVPSSETLRDHFGSDPDGHVTLQVGSESVTGSREKVLRFMEARFPNLVTVGGGGGVEDGKLPVMVTVTRLQHKSMLWHVERVLRWAEDLVKRGGKKAVDPSVGSPKMEIRKFARSYSELLEVMMEHARMEETLLFPFFDRADRGLSKAAKEEHARDLPLMNGIKEIIKSVGVLDSGSPDFQEALYNLSARLKLLLGQCKQHFKEEEVDLLPLMEALELSKDQEETALDQCFDLMHGTHGRLLKFFLEGLQPRDAMKYLDLISMCSNQDKIESMLQMIVK