Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76327.t1 | XP_013468026.1 | 90 | 842 | 38 | 4 | 3 | 798 | 108 | 949 | 0.00E+00 | 1398.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76327.t1 | A0A072VKV4 | 90.0 | 842 | 38 | 4 | 3 | 798 | 108 | 949 | 0.0e+00 | 1398.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene056853 | MS.gene76327 | 0.823206 | 1.57E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76327.t1 | MTR_1g060580 | 91.114 | 844 | 29 | 4 | 1 | 798 | 106 | 949 | 0.0 | 1579 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76327.t1 | AT1G19485 | 41.475 | 827 | 378 | 23 | 1 | 798 | 50 | 799 | 0.0 | 558 |
| MS.gene76327.t1 | AT1G19485 | 41.475 | 827 | 378 | 23 | 1 | 798 | 50 | 799 | 0.0 | 558 |
Find 0 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 24290 | gene | 566 | 10981 | 566 | ID=MS.gene76327 |
| 24290 | mRNA | 566 | 10981 | 566 | ID=MS.gene76327.t1;Parent=MS.gene76327 |
| 24290 | exon | 566 | 709 | 566 | ID=MS.gene76327.t1.exon1;Parent=MS.gene76327.t1 |
| 24290 | CDS | 566 | 709 | 566 | ID=cds.MS.gene76327.t1;Parent=MS.gene76327.t1 |
| 24290 | exon | 860 | 912 | 860 | ID=MS.gene76327.t1.exon2;Parent=MS.gene76327.t1 |
| 24290 | CDS | 860 | 912 | 860 | ID=cds.MS.gene76327.t1;Parent=MS.gene76327.t1 |
| 24290 | exon | 1110 | 1176 | 1110 | ID=MS.gene76327.t1.exon3;Parent=MS.gene76327.t1 |
| 24290 | CDS | 1110 | 1176 | 1110 | ID=cds.MS.gene76327.t1;Parent=MS.gene76327.t1 |
| 24290 | exon | 2697 | 2816 | 2697 | ID=MS.gene76327.t1.exon4;Parent=MS.gene76327.t1 |
| 24290 | CDS | 2697 | 2816 | 2697 | ID=cds.MS.gene76327.t1;Parent=MS.gene76327.t1 |
| 24290 | exon | 2896 | 3683 | 2896 | ID=MS.gene76327.t1.exon5;Parent=MS.gene76327.t1 |
| 24290 | CDS | 2896 | 3683 | 2896 | ID=cds.MS.gene76327.t1;Parent=MS.gene76327.t1 |
| 24290 | exon | 4859 | 4984 | 4859 | ID=MS.gene76327.t1.exon6;Parent=MS.gene76327.t1 |
| 24290 | CDS | 4859 | 4984 | 4859 | ID=cds.MS.gene76327.t1;Parent=MS.gene76327.t1 |
| 24290 | exon | 5951 | 6023 | 5951 | ID=MS.gene76327.t1.exon7;Parent=MS.gene76327.t1 |
| 24290 | CDS | 5951 | 6023 | 5951 | ID=cds.MS.gene76327.t1;Parent=MS.gene76327.t1 |
| 24290 | exon | 7086 | 7131 | 7086 | ID=MS.gene76327.t1.exon8;Parent=MS.gene76327.t1 |
| 24290 | CDS | 7086 | 7131 | 7086 | ID=cds.MS.gene76327.t1;Parent=MS.gene76327.t1 |
| 24290 | exon | 7267 | 7339 | 7267 | ID=MS.gene76327.t1.exon9;Parent=MS.gene76327.t1 |
| 24290 | CDS | 7267 | 7339 | 7267 | ID=cds.MS.gene76327.t1;Parent=MS.gene76327.t1 |
| 24290 | exon | 8360 | 8425 | 8360 | ID=MS.gene76327.t1.exon10;Parent=MS.gene76327.t1 |
| 24290 | CDS | 8360 | 8425 | 8360 | ID=cds.MS.gene76327.t1;Parent=MS.gene76327.t1 |
| 24290 | exon | 9288 | 9365 | 9288 | ID=MS.gene76327.t1.exon11;Parent=MS.gene76327.t1 |
| 24290 | CDS | 9288 | 9365 | 9288 | ID=cds.MS.gene76327.t1;Parent=MS.gene76327.t1 |
| 24290 | exon | 9449 | 9621 | 9449 | ID=MS.gene76327.t1.exon12;Parent=MS.gene76327.t1 |
| 24290 | CDS | 9449 | 9621 | 9449 | ID=cds.MS.gene76327.t1;Parent=MS.gene76327.t1 |
| 24290 | exon | 9885 | 9931 | 9885 | ID=MS.gene76327.t1.exon13;Parent=MS.gene76327.t1 |
| 24290 | CDS | 9885 | 9931 | 9885 | ID=cds.MS.gene76327.t1;Parent=MS.gene76327.t1 |
| 24290 | exon | 10354 | 10594 | 10354 | ID=MS.gene76327.t1.exon14;Parent=MS.gene76327.t1 |
| 24290 | CDS | 10354 | 10594 | 10354 | ID=cds.MS.gene76327.t1;Parent=MS.gene76327.t1 |
| 24290 | exon | 10683 | 10981 | 10683 | ID=MS.gene76327.t1.exon15;Parent=MS.gene76327.t1 |
| 24290 | CDS | 10683 | 10981 | 10683 | ID=cds.MS.gene76327.t1;Parent=MS.gene76327.t1 |
| Gene Sequence |
| Protein sequence |
