Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056853.t1 | XP_013468026.1 | 95.4 | 968 | 33 | 1 | 1 | 956 | 1 | 968 | 0.00E+00 | 1624.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056853.t1 | A0A072VKV4 | 95.4 | 968 | 33 | 1 | 1 | 956 | 1 | 968 | 0.0e+00 | 1624.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene056853 | MS.gene76132 | 0.846379 | 2.25E-59 | -1.69E-46 |
| MS.gene056853 | MS.gene76194 | 0.821689 | 3.53E-53 | -1.69E-46 |
| MS.gene056853 | MS.gene76327 | 0.823206 | 1.57E-53 | -1.69E-46 |
| MS.gene056853 | MS.gene81721 | 0.874161 | 8.38E-68 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056853.t1 | MTR_1g060580 | 95.455 | 968 | 32 | 1 | 1 | 956 | 1 | 968 | 0.0 | 1913 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056853.t1 | AT1G19485 | 43.045 | 913 | 384 | 24 | 57 | 943 | 3 | 805 | 0.0 | 643 |
| MS.gene056853.t1 | AT1G19485 | 43.045 | 913 | 384 | 24 | 57 | 943 | 3 | 805 | 0.0 | 643 |
Find 223 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACAAATTGGTTCTCACAATT+TGG | 0.152126 | 1.1:-46088712 | None:intergenic |
| GTGAGAGATGGTTGTGCTTT+GGG | 0.208094 | 1.1:+46097256 | MS.gene056853:CDS |
| ATTAAACGCAATTCTGCTTT+TGG | 0.218518 | 1.1:-46096844 | None:intergenic |
| CTCTAATATTGATAAGAAAA+TGG | 0.221187 | 1.1:+46097317 | MS.gene056853:CDS |
| TGGTTCATCTTATCACAAAA+TGG | 0.221693 | 1.1:+46088270 | MS.gene056853:CDS |
| TATGGTGTCTTCTAAATATC+AGG | 0.232318 | 1.1:+46088326 | MS.gene056853:CDS |
| CCTCATGATTATTTACTTGC+TGG | 0.237869 | 1.1:+46091610 | MS.gene056853:CDS |
| AATAATGGCCTACTTGTATC+TGG | 0.238881 | 1.1:-46089006 | None:intergenic |
| TCTTTGTGATGGTGATAATA+TGG | 0.240883 | 1.1:+46096996 | MS.gene056853:CDS |
| TTATGCAATGCTGCCATCTT+AGG | 0.244199 | 1.1:-46097207 | None:intergenic |
| GATAATGAAAAGCCGGATTC+TGG | 0.244429 | 1.1:+46097162 | MS.gene056853:CDS |
| GACATGAAGGCCTCAAGTTT+TGG | 0.251482 | 1.1:+46093997 | MS.gene056853:CDS |
| TGTATTCGCAGCAGCTTTCT+TGG | 0.251698 | 1.1:-46088848 | None:intergenic |
| GTATGCAGAAGCAGCTTTCT+TGG | 0.268262 | 1.1:-46088920 | None:intergenic |
| AGTGAGAGATGGTTGTGCTT+TGG | 0.288593 | 1.1:+46097255 | MS.gene056853:CDS |
| CCTCTTTCTTGCAGCTTCAA+TGG | 0.294909 | 1.1:-46096789 | None:intergenic |
| GCATTCTTTCCCTTTGTATT+CGG | 0.294913 | 1.1:-46088898 | None:intergenic |
| ATTAGGTTTACTTACGGAAT+TGG | 0.296469 | 1.1:+46086282 | MS.gene056853:CDS |
| GGGCTATCTTGCTGTCTTGT+TGG | 0.306280 | 1.1:+46089188 | MS.gene056853:CDS |
| CGTATTCATCTTATGCCATT+TGG | 0.307057 | 1.1:+46095872 | MS.gene056853:CDS |
| GGCTATCTTGCTGTCTTGTT+GGG | 0.307911 | 1.1:+46089189 | MS.gene056853:CDS |
| CCAGACTGTAAATGATTCTC+TGG | 0.312361 | 1.1:-46095622 | None:intergenic |
| AATATCCATCTAAAAGCATT+AGG | 0.316447 | 1.1:+46086265 | MS.gene056853:CDS |
| AAAATGGGTGCCTCACTTAC+TGG | 0.325896 | 1.1:+46088286 | MS.gene056853:CDS |
| ATTATTGATTAGCCCTGTAT+TGG | 0.333129 | 1.1:+46089023 | MS.gene056853:CDS |
| TTCTTCTTCCCCACAGAGTT+TGG | 0.336068 | 1.1:-46085623 | None:intergenic |
| TTTCTGCTACAGCTCAGTTT+TGG | 0.338281 | 1.1:-46097072 | None:intergenic |
| AACATTGAGCATTTGAATAC+AGG | 0.343917 | 1.1:-46090571 | None:intergenic |
| ATTTCTCCAGATGTAGTTCC+TGG | 0.344586 | 1.1:+46088772 | MS.gene056853:CDS |
| CTCTTTCTTGCAGCTTCAAT+GGG | 0.352650 | 1.1:-46096788 | None:intergenic |
| GAACAGTAAGAGGAACAAAT+TGG | 0.352749 | 1.1:-46088726 | None:intergenic |
| GAAATAAATTCAGCTGAATC+TGG | 0.353877 | 1.1:-46088754 | None:intergenic |
| CTGAGGAAGCATTGTCTTCT+CGG | 0.361974 | 1.1:+46097034 | MS.gene056853:CDS |
| GCAAGAGCTGTGCTTTCATC+TGG | 0.371132 | 1.1:-46097102 | None:intergenic |
| TGCAGCCTTCGCCAAGCTAA+TGG | 0.372323 | 1.1:-46095785 | None:intergenic |
| TAAATAGTGTGGCAATAGTT+AGG | 0.374286 | 1.1:-46085405 | None:intergenic |
| CTTGTTGGGCAATGGATCTC+TGG | 0.375077 | 1.1:+46089203 | MS.gene056853:CDS |
| CTTTCCAGTGTATATCGTTC+CGG | 0.378783 | 1.1:-46095824 | None:intergenic |
| GCAGAGGTGCCGTGCAAATA+TGG | 0.381854 | 1.1:+46088308 | MS.gene056853:CDS |
| ATACTTGGATTCTTGAGGTT+TGG | 0.382563 | 1.1:-46086568 | None:intergenic |
| GTGTATATCGTTCCGGTGAC+AGG | 0.384153 | 1.1:-46095817 | None:intergenic |
| GCCCATGCAACTGTTCTAAT+AGG | 0.389486 | 1.1:-46092911 | None:intergenic |
| GTAGGTTGGATATTAATCAT+AGG | 0.390058 | 1.1:+46088968 | MS.gene056853:CDS |
| AATACAGGGCTAATCAATAA+TGG | 0.393448 | 1.1:-46089021 | None:intergenic |
| ACTATTAAGTTAGAAGTCTC+TGG | 0.395932 | 1.1:-46093966 | None:intergenic |
| CCAGAGAATCATTTACAGTC+TGG | 0.402777 | 1.1:+46095622 | MS.gene056853:CDS |
| GTTCAAGTGTCACCGATAAC+AGG | 0.413037 | 1.1:+46095898 | MS.gene056853:CDS |
| CCGAAAACAGTACCTGTTAT+CGG | 0.414337 | 1.1:-46095910 | None:intergenic |
| ACAAAGCCTATACTTTGTTT+CGG | 0.415181 | 1.1:+46092875 | MS.gene056853:CDS |
| GGGAAAGGAGAGTTTGATAC+TGG | 0.422684 | 1.1:-46096768 | None:intergenic |
| TGATGGTGATAATATGGGTT+TGG | 0.424625 | 1.1:+46097002 | MS.gene056853:CDS |
| TTAGGTTTACTTACGGAATT+GGG | 0.426191 | 1.1:+46086283 | MS.gene056853:CDS |
| ATATCAAACAAAGAAACCTT+AGG | 0.426697 | 1.1:-46085562 | None:intergenic |
| GATGCTTGAGGTTCCAATAC+AGG | 0.430718 | 1.1:-46089036 | None:intergenic |
| GCTGTTGCTGCTCATCCGCC+TGG | 0.432574 | 1.1:+46088250 | MS.gene056853:CDS |
| CTTTGTGATGGTGATAATAT+GGG | 0.434640 | 1.1:+46096997 | MS.gene056853:CDS |
| ATAATGAAAAGCCGGATTCT+GGG | 0.437268 | 1.1:+46097163 | MS.gene056853:CDS |
| CTTGCTGTCTTGTTGGGCAA+TGG | 0.437681 | 1.1:+46089195 | MS.gene056853:CDS |
| GAACTGCCAGGAACTACATC+TGG | 0.439083 | 1.1:-46088778 | None:intergenic |
| GTTCTGTATGGGCATTAGAT+TGG | 0.440759 | 1.1:+46086781 | MS.gene056853:CDS |
| GCATCTGGTAGTGTCTCAAA+TGG | 0.442876 | 1.1:+46088586 | MS.gene056853:CDS |
| AGGTGGCATGGGATGTCAAA+TGG | 0.446867 | 1.1:+46089124 | MS.gene056853:CDS |
| TCACATTTAATTGAACAATC+AGG | 0.451414 | 1.1:-46086825 | None:intergenic |
| TAATGGACTTGTACGTTGTC+AGG | 0.453115 | 1.1:+46097284 | MS.gene056853:CDS |
| TTACTTGCTGGCTGCCATGA+TGG | 0.453345 | 1.1:+46091622 | MS.gene056853:CDS |
| AGCCTATACTTTGTTTCGGT+GGG | 0.453635 | 1.1:+46092879 | MS.gene056853:CDS |
| TGCAAAAGGAGGAGCAACTT+GGG | 0.454385 | 1.1:+46086541 | MS.gene056853:CDS |
| TCAGGCTCCCCATGCATCCT+AGG | 0.455090 | 1.1:-46086807 | None:intergenic |
| TTCATCTGCCACTGTTCCTA+AGG | 0.455578 | 1.1:+46086362 | MS.gene056853:CDS |
| ATTATCACTAACCCTTCAAA+AGG | 0.457036 | 1.1:-46092935 | None:intergenic |
| ATGCTACTCTTACCTGAAAA+CGG | 0.460532 | 1.1:-46096220 | None:intergenic |
| CGAGAATTTCTTTGAAGACA+TGG | 0.460588 | 1.1:+46085591 | MS.gene056853:CDS |
| AAAAGCATTAGGTTTACTTA+CGG | 0.463447 | 1.1:+46086276 | MS.gene056853:CDS |
| AGGAGCCTCAGAGGACGAAA+TGG | 0.465031 | 1.1:-46095590 | None:intergenic |
| CGACTTCCATTCTTTCTATG+TGG | 0.466917 | 1.1:+46096705 | MS.gene056853:CDS |
| CCACCTTTCCATTATGAGCT+AGG | 0.467563 | 1.1:-46089107 | None:intergenic |
| ATGCAAAAGGAGGAGCAACT+TGG | 0.467583 | 1.1:+46086540 | MS.gene056853:CDS |
| TCCTCATGCAAGCATCGAAT+GGG | 0.467596 | 1.1:+46089168 | MS.gene056853:CDS |
| GTGTCATGCCTAGCTCATAA+TGG | 0.467799 | 1.1:+46089099 | MS.gene056853:CDS |
| ATCATATCTCCCCGGGAAGA+AGG | 0.467886 | 1.1:+46088366 | MS.gene056853:CDS |
| GCTCTCAGTGCATGAGGAAG+AGG | 0.476909 | 1.1:-46090499 | None:intergenic |
| GGTTCATCTTATCACAAAAT+GGG | 0.477171 | 1.1:+46088271 | MS.gene056853:CDS |
| ACTGATCCACATAGAAAGAA+TGG | 0.482260 | 1.1:-46096711 | None:intergenic |
| TGAGAGATGGTTGTGCTTTG+GGG | 0.482698 | 1.1:+46097257 | MS.gene056853:CDS |
| GGGCATTAGATTGGTGTCCT+AGG | 0.483270 | 1.1:+46086790 | MS.gene056853:CDS |
| TCTGGAAGTTGAACAGTAAG+AGG | 0.486423 | 1.1:-46088736 | None:intergenic |
| CTCTTTGATATTAAATAGTG+TGG | 0.488495 | 1.1:-46085416 | None:intergenic |
| CTATCCACTGCTATTACAGT+TGG | 0.488965 | 1.1:-46088538 | None:intergenic |
| ATCTTAGGAGGAAAGACTTC+GGG | 0.492038 | 1.1:-46097192 | None:intergenic |
| TTCCCCACAGAGTTTGGCAA+TGG | 0.498095 | 1.1:-46085617 | None:intergenic |
| TCTTGTTGCAAGAAGTAGGT+TGG | 0.499166 | 1.1:+46088954 | MS.gene056853:CDS |
| CCATTGAAGCTGCAAGAAAG+AGG | 0.499192 | 1.1:+46096789 | MS.gene056853:CDS |
| TCGGGAGTAGTCCCAGAATC+CGG | 0.499534 | 1.1:-46097174 | None:intergenic |
| TGAATGTTGGAGGTTCTGTA+TGG | 0.503920 | 1.1:+46086769 | MS.gene056853:CDS |
| ACAAATCGATAGAAATAAAG+AGG | 0.505265 | 1.1:+46088422 | MS.gene056853:CDS |
| GAATCATTTACAGTCTGGAT+TGG | 0.508798 | 1.1:+46095627 | MS.gene056853:CDS |
| TGATTCTCTGGGAAGGTTGG+AGG | 0.509208 | 1.1:-46095610 | None:intergenic |
| TCTTGCAGCTTCAATGGGAA+AGG | 0.509900 | 1.1:-46096783 | None:intergenic |
| CGAAGTCTTTCCTCCTAAGA+TGG | 0.511144 | 1.1:+46097194 | MS.gene056853:CDS |
| TTCCTATTAGAACAGTTGCA+TGG | 0.511742 | 1.1:+46092909 | MS.gene056853:CDS |
| AAGAAACAACCTTGGTTGCA+TGG | 0.512538 | 1.1:+46095844 | MS.gene056853:CDS |
| TGCAATGCTGCCATCTTAGG+AGG | 0.515229 | 1.1:-46097204 | None:intergenic |
| CTCATAATGGAAAGGTGGCA+TGG | 0.517043 | 1.1:+46089112 | MS.gene056853:CDS |
| TGAGGAAGCATTGTCTTCTC+GGG | 0.518917 | 1.1:+46097035 | MS.gene056853:CDS |
| TGACACTTGAACACTCCAAA+TGG | 0.520023 | 1.1:-46095887 | None:intergenic |
| AACAATGAAAACCATTAGCT+TGG | 0.520423 | 1.1:+46095774 | MS.gene056853:CDS |
| TCAACTCCGGGAGTATTTGT+CGG | 0.520616 | 1.1:-46097141 | None:intergenic |
| TATCAAACAAAGAAACCTTA+GGG | 0.521010 | 1.1:-46085561 | None:intergenic |
| ACAGCTCTTGCTTGTAGAGA+TGG | 0.522738 | 1.1:+46097114 | MS.gene056853:CDS |
| AAATGATTCTCTGGGAAGGT+TGG | 0.522935 | 1.1:-46095613 | None:intergenic |
| TAGGTTGGATATTAATCATA+GGG | 0.524008 | 1.1:+46088969 | MS.gene056853:CDS |
| AAACTCTTGTTGCAAGAAGT+AGG | 0.524383 | 1.1:+46088950 | MS.gene056853:CDS |
| AAAACGCTATCATCTCTTCA+AGG | 0.525511 | 1.1:-46097340 | None:intergenic |
| AAGCCTATACTTTGTTTCGG+TGG | 0.531447 | 1.1:+46092878 | MS.gene056853:CDS |
| CTTAGGGTTAGCACCACTGC+TGG | 0.532612 | 1.1:-46085545 | None:intergenic |
| ATTGGTGTCCTAGGATGCAT+GGG | 0.532952 | 1.1:+46086799 | MS.gene056853:CDS |
| TTCTTTCTAGGCCTTCCTCT+AGG | 0.533374 | 1.1:-46088445 | None:intergenic |
| CAAATTATACCGTTCCATCA+TGG | 0.534327 | 1.1:-46091636 | None:intergenic |
| TTCCTCATGCAAGCATCGAA+TGG | 0.535078 | 1.1:+46089167 | MS.gene056853:CDS |
| GGGACCAAGTACATAGCATC+TGG | 0.536684 | 1.1:+46088571 | MS.gene056853:CDS |
| ACTACCAGATGCTATGTACT+TGG | 0.537317 | 1.1:-46088575 | None:intergenic |
| AAGCCATACTTGGATTCTTG+AGG | 0.541078 | 1.1:-46086573 | None:intergenic |
| GATTGGTGTCCTAGGATGCA+TGG | 0.541625 | 1.1:+46086798 | MS.gene056853:CDS |
| CGGAGTTGATAATGAAAAGC+CGG | 0.542156 | 1.1:+46097155 | MS.gene056853:CDS |
| CAGCAGTGGTGCTAACCCTA+AGG | 0.543146 | 1.1:+46085546 | MS.gene056853:CDS |
| TCCTATTAGAACAGTTGCAT+GGG | 0.543628 | 1.1:+46092910 | MS.gene056853:CDS |
| TCAGGCATGGTTGCATATTG+TGG | 0.547666 | 1.1:+46096179 | MS.gene056853:intron |
| GCAAATGACCTCCCTGTCAC+CGG | 0.549534 | 1.1:+46095805 | MS.gene056853:CDS |
| AGAGACTTTGTGATGAATGT+TGG | 0.551861 | 1.1:+46086756 | MS.gene056853:intron |
| AAAGCTGCTGCGAATACAAA+GGG | 0.552131 | 1.1:+46088853 | MS.gene056853:CDS |
| TTTGTTGCAGCTCTTTGTGA+TGG | 0.553499 | 1.1:+46096985 | MS.gene056853:intron |
| AAAGCTGCTCCGAATACAAA+GGG | 0.553544 | 1.1:+46088889 | MS.gene056853:CDS |
| ATAATGGCCTACTTGTATCT+GGG | 0.555195 | 1.1:-46089005 | None:intergenic |
| CATCTGGTAGTGTCTCAAAT+GGG | 0.555891 | 1.1:+46088587 | MS.gene056853:CDS |
| GAGAGCAGTTTATATGCAGA+AGG | 0.556960 | 1.1:+46090516 | MS.gene056853:CDS |
| TGCTGGCTGCCATGATGGAA+CGG | 0.557319 | 1.1:+46091627 | MS.gene056853:CDS |
| TTAAATGTGCAGAGAATGGA+AGG | 0.560081 | 1.1:+46086236 | MS.gene056853:intron |
| GCTACAGCGGCAAATGATGA+AGG | 0.560213 | 1.1:+46085508 | MS.gene056853:CDS |
| CATCTTAGGAGGAAAGACTT+CGG | 0.564444 | 1.1:-46097193 | None:intergenic |
| GCCTATACTTTGTTTCGGTG+GGG | 0.564923 | 1.1:+46092880 | MS.gene056853:CDS |
| TAGAAGACACCATATTTGCA+CGG | 0.566075 | 1.1:-46088317 | None:intergenic |
| AATTCTTCATCTAAATGTGA+TGG | 0.566247 | 1.1:+46092716 | MS.gene056853:CDS |
| GTTGTAGCCCAGATACAAGT+AGG | 0.566508 | 1.1:+46088998 | MS.gene056853:CDS |
| GACTTTGTGATGAATGTTGG+AGG | 0.568156 | 1.1:+46086759 | MS.gene056853:CDS |
| GAAAGCTGCTCCGAATACAA+AGG | 0.568270 | 1.1:+46088888 | MS.gene056853:CDS |
| TCCCCACCGAAACAAAGTAT+AGG | 0.572203 | 1.1:-46092881 | None:intergenic |
| TGCTGATGATTCTGCTACAG+CGG | 0.574927 | 1.1:+46085495 | MS.gene056853:CDS |
| ACACCATTGCCAAACTCTGT+GGG | 0.575153 | 1.1:+46085614 | MS.gene056853:CDS |
| AGCAAGTAAATAATCATGAG+GGG | 0.577811 | 1.1:-46091608 | None:intergenic |
| CAGCATTGCATAAAGTGAGA+TGG | 0.578502 | 1.1:+46097217 | MS.gene056853:CDS |
| AAATAAAGAGGCCTAGAGGA+AGG | 0.580422 | 1.1:+46088434 | MS.gene056853:CDS |
| AGCAGTTTATATGCAGAAGG+AGG | 0.581837 | 1.1:+46090519 | MS.gene056853:CDS |
| TGATGTTCATCAGAACTGCC+AGG | 0.583511 | 1.1:-46088790 | None:intergenic |
| GGTGCCTCACTTACTGGCAG+AGG | 0.584837 | 1.1:+46088292 | MS.gene056853:CDS |
| ACTGACCACTCCACTGTCAG+TGG | 0.585703 | 1.1:-46091580 | None:intergenic |
| TCATAATGGAAAGGTGGCAT+GGG | 0.586605 | 1.1:+46089113 | MS.gene056853:CDS |
| TGTATATCGTTCCGGTGACA+GGG | 0.587304 | 1.1:-46095816 | None:intergenic |
| AAGAAGTATCATATCTCCCC+GGG | 0.588430 | 1.1:+46088359 | MS.gene056853:CDS |
| CAGCAAGTAAATAATCATGA+GGG | 0.589131 | 1.1:-46091609 | None:intergenic |
| GAATCCAACTGTAATAGCAG+TGG | 0.589763 | 1.1:+46088534 | MS.gene056853:CDS |
| GAAAGCTGCTGCGAATACAA+AGG | 0.590265 | 1.1:+46088852 | MS.gene056853:CDS |
| CAGTGGATAGTACAAATTGT+GGG | 0.590541 | 1.1:+46088551 | MS.gene056853:CDS |
| ATGGTGTCTTCTAAATATCA+GGG | 0.592032 | 1.1:+46088327 | MS.gene056853:CDS |
| GACACCATTGCCAAACTCTG+TGG | 0.595970 | 1.1:+46085613 | MS.gene056853:CDS |
| CAGACTGTAAATGATTCTCT+GGG | 0.598089 | 1.1:-46095621 | None:intergenic |
| ATGCTTGAGGTTCCAATACA+GGG | 0.598484 | 1.1:-46089035 | None:intergenic |
| GGGTTTGGAATCTGTATCTG+AGG | 0.600826 | 1.1:+46097017 | MS.gene056853:CDS |
| GAAAACCATTAGCTTGGCGA+AGG | 0.602327 | 1.1:+46095780 | MS.gene056853:CDS |
| GCAAATGATGAAGGTGGTGG+TGG | 0.602662 | 1.1:+46085517 | MS.gene056853:CDS |
| TTGTATCAATTGCAGGTGGG+AGG | 0.602833 | 1.1:+46090474 | MS.gene056853:intron |
| TCAGCATAATATGCAAAAGG+AGG | 0.605517 | 1.1:+46086530 | MS.gene056853:intron |
| AAACAAGAGAGTAATGGAAG+AGG | 0.607256 | 1.1:+46085372 | None:intergenic |
| GAAGAAGTATCATATCTCCC+CGG | 0.607569 | 1.1:+46088358 | MS.gene056853:CDS |
| GGCACCTCTGCCAGTAAGTG+AGG | 0.611285 | 1.1:-46088296 | None:intergenic |
| ATAGTAACCGCAGGACATGA+AGG | 0.613215 | 1.1:+46093984 | MS.gene056853:CDS |
| GTCACCGGAACGATATACAC+TGG | 0.613239 | 1.1:+46095820 | MS.gene056853:CDS |
| CTGTAAATGATTCTCTGGGA+AGG | 0.613421 | 1.1:-46095617 | None:intergenic |
| GAGGAATCAAGATTGCTAAG+AGG | 0.614969 | 1.1:-46089150 | None:intergenic |
| TAAACTGCTCTCAGTGCATG+AGG | 0.615335 | 1.1:-46090505 | None:intergenic |
| TCAGCTAACAACTAAATCAG+TGG | 0.616202 | 1.1:+46096662 | MS.gene056853:intron |
| CCAGCAAGTAAATAATCATG+AGG | 0.616229 | 1.1:-46091610 | None:intergenic |
| CCTAGCTCATAATGGAAAGG+TGG | 0.620737 | 1.1:+46089107 | MS.gene056853:CDS |
| GCAGTGGATAGTACAAATTG+TGG | 0.626003 | 1.1:+46088550 | MS.gene056853:CDS |
| GAGAGATGGTTGTGCTTTGG+GGG | 0.626750 | 1.1:+46097258 | MS.gene056853:CDS |
| ATGCCTAGCTCATAATGGAA+AGG | 0.628963 | 1.1:+46089104 | MS.gene056853:CDS |
| GCAGTTTATATGCAGAAGGA+GGG | 0.629576 | 1.1:+46090520 | MS.gene056853:CDS |
| TGATTGTTCAATTAAATGTG+AGG | 0.630368 | 1.1:+46086827 | MS.gene056853:CDS |
| TTAACAAGGGTAGTGAGAGA+TGG | 0.634556 | 1.1:+46097244 | MS.gene056853:CDS |
| GCCCATTCGATGCTTGCATG+AGG | 0.635290 | 1.1:-46089169 | None:intergenic |
| GTAATCCATTTCGTCCTCTG+AGG | 0.636836 | 1.1:+46095585 | MS.gene056853:intron |
| CTTGAGGCCTTCATGTCCTG+CGG | 0.638879 | 1.1:-46093991 | None:intergenic |
| GTTGCATATTGTGGTGCAGA+CGG | 0.639024 | 1.1:+46096188 | MS.gene056853:CDS |
| ATGTGGATCAGTGACTGAAG+AGG | 0.639441 | 1.1:+46096722 | MS.gene056853:CDS |
| GCTAGGCATGACACAACTCT+AGG | 0.640886 | 1.1:-46089090 | None:intergenic |
| GAATGTTGGAGGTTCTGTAT+GGG | 0.641333 | 1.1:+46086770 | MS.gene056853:CDS |
| TCTAACTTAATAGTAACCGC+AGG | 0.643606 | 1.1:+46093975 | MS.gene056853:CDS |
| GGTGCACCGACAAATACTCC+CGG | 0.644237 | 1.1:+46097135 | MS.gene056853:CDS |
| ATGGGACAAGTAGATGCTTG+AGG | 0.647867 | 1.1:-46089048 | None:intergenic |
| GCAAAAGGAGGAGCAACTTG+GGG | 0.648508 | 1.1:+46086542 | MS.gene056853:CDS |
| ACACTGGAAAGAAACAACCT+TGG | 0.652297 | 1.1:+46095836 | MS.gene056853:CDS |
| ATAGAAATAAAGAGGCCTAG+AGG | 0.655432 | 1.1:+46088430 | MS.gene056853:CDS |
| GTGAGATGGAACATTAACAA+GGG | 0.656102 | 1.1:+46097231 | MS.gene056853:CDS |
| GAAGGTTGGAGGAGCCTCAG+AGG | 0.658311 | 1.1:-46095599 | None:intergenic |
| TGGATTGGCAGTCAAAGCCA+AGG | 0.660146 | 1.1:+46095642 | MS.gene056853:CDS |
| AGTGAGATGGAACATTAACA+AGG | 0.663871 | 1.1:+46097230 | MS.gene056853:CDS |
| TACGTAGTACCATGCAACCA+AGG | 0.666142 | 1.1:-46095853 | None:intergenic |
| GCGGCAAATGATGAAGGTGG+TGG | 0.666480 | 1.1:+46085514 | MS.gene056853:CDS |
| GCATTCCACTGACAGTGGAG+TGG | 0.668981 | 1.1:+46091575 | MS.gene056853:intron |
| GGTGGTGGTAGTACCAGCAG+TGG | 0.670189 | 1.1:+46085532 | MS.gene056853:CDS |
| ACACAGCATTCCACTGACAG+TGG | 0.671873 | 1.1:+46091570 | MS.gene056853:intron |
| GCAAGTAAATAATCATGAGG+GGG | 0.677289 | 1.1:-46091607 | None:intergenic |
| TGGCATGGGATGTCAAATGG+AGG | 0.678240 | 1.1:+46089127 | MS.gene056853:CDS |
| GACTTGTACCTTAGGAACAG+TGG | 0.679559 | 1.1:-46086370 | None:intergenic |
| CACCATTGCCAAACTCTGTG+GGG | 0.682548 | 1.1:+46085615 | MS.gene056853:CDS |
| TGAAACGTGGCAGCTTACAG+AGG | 0.684971 | 1.1:+46090593 | MS.gene056853:CDS |
| TTTATATGTAGGTTGCTCTG+TGG | 0.688819 | 1.1:+46092681 | MS.gene056853:intron |
| AAATGCTCAATGTTGAAACG+TGG | 0.713740 | 1.1:+46090580 | MS.gene056853:CDS |
| TTGGTGTCCTAGGATGCATG+GGG | 0.719461 | 1.1:+46086800 | MS.gene056853:CDS |
| ACCGTAGGTCCCAAAACTTG+AGG | 0.731840 | 1.1:-46094007 | None:intergenic |
| TTGTGATAAGATGAACCAGG+CGG | 0.737973 | 1.1:-46088265 | None:intergenic |
| ACAGCGGCAAATGATGAAGG+TGG | 0.745146 | 1.1:+46085511 | MS.gene056853:CDS |
| ATATCGTTCCGGTGACAGGG+AGG | 0.770381 | 1.1:-46095813 | None:intergenic |
| ACAGTGGCAGATGAAAACTG+AGG | 0.800494 | 1.1:-46086354 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 46085385 | 46097353 | 46085385 | ID=MS.gene056853 |
| chr1.1 | mRNA | 46085385 | 46097353 | 46085385 | ID=MS.gene056853.t1;Parent=MS.gene056853 |
| chr1.1 | exon | 46085385 | 46085707 | 46085385 | ID=MS.gene056853.t1.exon1;Parent=MS.gene056853.t1 |
| chr1.1 | CDS | 46085385 | 46085707 | 46085385 | ID=cds.MS.gene056853.t1;Parent=MS.gene056853.t1 |
| chr1.1 | exon | 46086248 | 46086383 | 46086248 | ID=MS.gene056853.t1.exon2;Parent=MS.gene056853.t1 |
| chr1.1 | CDS | 46086248 | 46086383 | 46086248 | ID=cds.MS.gene056853.t1;Parent=MS.gene056853.t1 |
| chr1.1 | exon | 46086534 | 46086586 | 46086534 | ID=MS.gene056853.t1.exon3;Parent=MS.gene056853.t1 |
| chr1.1 | CDS | 46086534 | 46086586 | 46086534 | ID=cds.MS.gene056853.t1;Parent=MS.gene056853.t1 |
| chr1.1 | exon | 46086758 | 46086848 | 46086758 | ID=MS.gene056853.t1.exon4;Parent=MS.gene056853.t1 |
| chr1.1 | CDS | 46086758 | 46086848 | 46086758 | ID=cds.MS.gene056853.t1;Parent=MS.gene056853.t1 |
| chr1.1 | exon | 46088244 | 46089229 | 46088244 | ID=MS.gene056853.t1.exon5;Parent=MS.gene056853.t1 |
| chr1.1 | CDS | 46088244 | 46089229 | 46088244 | ID=cds.MS.gene056853.t1;Parent=MS.gene056853.t1 |
| chr1.1 | exon | 46090489 | 46090614 | 46090489 | ID=MS.gene056853.t1.exon6;Parent=MS.gene056853.t1 |
| chr1.1 | CDS | 46090489 | 46090614 | 46090489 | ID=cds.MS.gene056853.t1;Parent=MS.gene056853.t1 |
| chr1.1 | exon | 46091576 | 46091648 | 46091576 | ID=MS.gene056853.t1.exon7;Parent=MS.gene056853.t1 |
| chr1.1 | CDS | 46091576 | 46091648 | 46091576 | ID=cds.MS.gene056853.t1;Parent=MS.gene056853.t1 |
| chr1.1 | exon | 46092692 | 46092737 | 46092692 | ID=MS.gene056853.t1.exon8;Parent=MS.gene056853.t1 |
| chr1.1 | CDS | 46092692 | 46092737 | 46092692 | ID=cds.MS.gene056853.t1;Parent=MS.gene056853.t1 |
| chr1.1 | exon | 46092873 | 46092945 | 46092873 | ID=MS.gene056853.t1.exon9;Parent=MS.gene056853.t1 |
| chr1.1 | CDS | 46092873 | 46092945 | 46092873 | ID=cds.MS.gene056853.t1;Parent=MS.gene056853.t1 |
| chr1.1 | exon | 46093962 | 46094027 | 46093962 | ID=MS.gene056853.t1.exon10;Parent=MS.gene056853.t1 |
| chr1.1 | CDS | 46093962 | 46094027 | 46093962 | ID=cds.MS.gene056853.t1;Parent=MS.gene056853.t1 |
| chr1.1 | exon | 46095586 | 46095663 | 46095586 | ID=MS.gene056853.t1.exon11;Parent=MS.gene056853.t1 |
| chr1.1 | CDS | 46095586 | 46095663 | 46095586 | ID=cds.MS.gene056853.t1;Parent=MS.gene056853.t1 |
| chr1.1 | exon | 46095747 | 46095919 | 46095747 | ID=MS.gene056853.t1.exon12;Parent=MS.gene056853.t1 |
| chr1.1 | CDS | 46095747 | 46095919 | 46095747 | ID=cds.MS.gene056853.t1;Parent=MS.gene056853.t1 |
| chr1.1 | exon | 46096183 | 46096229 | 46096183 | ID=MS.gene056853.t1.exon13;Parent=MS.gene056853.t1 |
| chr1.1 | CDS | 46096183 | 46096229 | 46096183 | ID=cds.MS.gene056853.t1;Parent=MS.gene056853.t1 |
| chr1.1 | exon | 46096666 | 46096906 | 46096666 | ID=MS.gene056853.t1.exon14;Parent=MS.gene056853.t1 |
| chr1.1 | CDS | 46096666 | 46096906 | 46096666 | ID=cds.MS.gene056853.t1;Parent=MS.gene056853.t1 |
| chr1.1 | exon | 46096995 | 46097353 | 46096995 | ID=MS.gene056853.t1.exon15;Parent=MS.gene056853.t1 |
| chr1.1 | CDS | 46096995 | 46097353 | 46096995 | ID=cds.MS.gene056853.t1;Parent=MS.gene056853.t1 |
| Gene Sequence |
| Protein sequence |
