Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
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Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
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Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
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TFs/TRs:
Gene ID | Type | Classification |
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Protein Kinases:
Gene ID | Type | Classification |
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Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene055818 | MS.gene76354 | 0.802898 | 4.51E-49 | -1.69E-46 |
MS.gene056366 | MS.gene76354 | 0.818405 | 1.99E-52 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
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Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
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Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Find 13 sgRNAs with CRISPR-Local
Find 133 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTTCCGAGGAAGTGACATTA+AGG | 0.317568 | 8.1:+29725988 | MS.gene76354:CDS |
CATTCATAAACCTTGTCACT+TGG | 0.462160 | 8.1:-29725959 | None:intergenic |
AAGCTCTAGAGCAATTAATC+TGG | 0.476879 | 8.1:+29727731 | MS.gene76354:CDS |
AAGTAAACTTGTCTCTGAAA+AGG | 0.481023 | 8.1:+29726856 | MS.gene76354:intron |
TCATAAACCTTGTCACTTGG+AGG | 0.500736 | 8.1:-29725956 | None:intergenic |
AATTTATCAATCACATCAGC+AGG | 0.520508 | 8.1:-29727700 | None:intergenic |
TTACCTTAATGTCACTTCCT+CGG | 0.538524 | 8.1:-29725991 | None:intergenic |
GTTAGATGCTATGGAACAGT+GGG | 0.539899 | 8.1:+29725908 | None:intergenic |
ATGTGATTGATAAATTTGAC+AGG | 0.544982 | 8.1:+29727707 | MS.gene76354:CDS |
ACAGTGGGGAGAAGAAAAGA+TGG | 0.615197 | 8.1:+29725923 | MS.gene76354:CDS |
AGTTAGATGCTATGGAACAG+TGG | 0.663318 | 8.1:+29725907 | None:intergenic |
ACAAGTACCTCCAAGTGACA+AGG | 0.677388 | 8.1:+29725949 | MS.gene76354:CDS |
TTAGATGCTATGGAACAGTG+GGG | 0.796776 | 8.1:+29725909 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TTTTAAAAAATCAAAAGTAT+AGG | - | chr8.1:29727275-29727294 | None:intergenic | 10.0% |
!! | AAAAGGAAAATAATATACAA+AGG | - | chr8.1:29726366-29726385 | None:intergenic | 15.0% |
!! | CTATATTATCATTATTTAAC+TGG | + | chr8.1:29726014-29726033 | MS.gene76354:intron | 15.0% |
!! | TACGAAAAAAATAAATAACA+TGG | - | chr8.1:29726907-29726926 | None:intergenic | 15.0% |
!!! | ATATAATCTGACTTATTTTT+AGG | + | chr8.1:29728373-29728392 | MS.gene76354:intron | 15.0% |
!!! | TGTTATTTATTTTTTTCGTA+AGG | + | chr8.1:29726907-29726926 | MS.gene76354:intron | 15.0% |
!!! | TTGATCATATTCTTTTTAAT+AGG | + | chr8.1:29726412-29726431 | MS.gene76354:intron | 15.0% |
!! | ACTATTTAGATAGAATATGA+TGG | + | chr8.1:29727854-29727873 | MS.gene76354:intron | 20.0% |
!! | AGAAATTTGAGAAACAAAAA+TGG | - | chr8.1:29727656-29727675 | None:intergenic | 20.0% |
!! | ATGATTAGAAGAAAGATATA+TGG | + | chr8.1:29727125-29727144 | MS.gene76354:intron | 20.0% |
!! | TAAAATACTTCAACGAAAAA+TGG | - | chr8.1:29727803-29727822 | None:intergenic | 20.0% |
!! | TCAAAATAACTTAAAAGTCT+TGG | - | chr8.1:29728011-29728030 | None:intergenic | 20.0% |
!! | TCAAATTTCATAATAGCAAA+GGG | - | chr8.1:29726640-29726659 | None:intergenic | 20.0% |
!!! | AAACAAAAATGGTTGTTTTA+TGG | - | chr8.1:29727645-29727664 | None:intergenic | 20.0% |
!!! | TTGATATGATAACATTTTAG+TGG | + | chr8.1:29727067-29727086 | MS.gene76354:intron | 20.0% |
!!! | TTTTGTTTCTCAAATTTCTT+AGG | + | chr8.1:29727657-29727676 | MS.gene76354:intron | 20.0% |
! | AAAGATAGCAAACTTCAATT+AGG | - | chr8.1:29726808-29726827 | None:intergenic | 25.0% |
! | AGAATATGATCAACCTAAAA+AGG | - | chr8.1:29726405-29726424 | None:intergenic | 25.0% |
! | ATGTGATTGATAAATTTGAC+AGG | + | chr8.1:29727707-29727726 | MS.gene76354:CDS | 25.0% |
! | CAAATTTCATAATAGCAAAG+GGG | - | chr8.1:29726639-29726658 | None:intergenic | 25.0% |
! | CTACTTGTAAATGTAACTTT+CGG | + | chr8.1:29727958-29727977 | MS.gene76354:intron | 25.0% |
! | CTCAAATTTCATAATAGCAA+AGG | - | chr8.1:29726641-29726660 | None:intergenic | 25.0% |
! | TAGATAAACAATAGTGCTAT+GGG | + | chr8.1:29727879-29727898 | MS.gene76354:intron | 25.0% |
! | TCACATTGAATGCAATTAAT+TGG | + | chr8.1:29728194-29728213 | MS.gene76354:intron | 25.0% |
! | TCTCTGTAATAAATAGCTAA+TGG | + | chr8.1:29728228-29728247 | MS.gene76354:intron | 25.0% |
! | TTTGTCAAAAATAACCACTA+TGG | - | chr8.1:29728259-29728278 | None:intergenic | 25.0% |
!! | GAGAATTTTGTAGAAGTAAA+AGG | - | chr8.1:29726383-29726402 | None:intergenic | 25.0% |
!! | GTGTTAATTGCTATTCTTTA+AGG | - | chr8.1:29726757-29726776 | None:intergenic | 25.0% |
!! | TCTACAAAATTCTCCTTTTT+AGG | + | chr8.1:29726389-29726408 | MS.gene76354:intron | 25.0% |
!!! | CGTTGAAGTATTTTATTAAG+TGG | + | chr8.1:29727808-29727827 | MS.gene76354:intron | 25.0% |
!!! | CTTTGCTATTATGAAATTTG+AGG | + | chr8.1:29726639-29726658 | MS.gene76354:intron | 25.0% |
!!! | GAAGTATTTTATTAAGTGGT+GGG | + | chr8.1:29727812-29727831 | MS.gene76354:intron | 25.0% |
!!! | TAATCTGACTTATTTTTAGG+TGG | + | chr8.1:29728376-29728395 | MS.gene76354:intron | 25.0% |
!!! | TAATTGAAGTTTGCTATCTT+TGG | + | chr8.1:29726807-29726826 | MS.gene76354:intron | 25.0% |
!!! | TATGATAACATTTTAGTGGT+TGG | + | chr8.1:29727071-29727090 | MS.gene76354:intron | 25.0% |
!!! | TGAAGTATTTTATTAAGTGG+TGG | + | chr8.1:29727811-29727830 | MS.gene76354:intron | 25.0% |
!!! | TGTGATATATCTTAGTTTTG+AGG | + | chr8.1:29726158-29726177 | MS.gene76354:intron | 25.0% |
!!! | TTTTTCGTAAGGTATTTTGA+TGG | + | chr8.1:29726918-29726937 | MS.gene76354:intron | 25.0% |
AAAAGTTGCATAAACGAACT+AGG | - | chr8.1:29726244-29726263 | None:intergenic | 30.0% | |
AAAGTTGCATAAACGAACTA+GGG | - | chr8.1:29726243-29726262 | None:intergenic | 30.0% | |
AATTTATCAATCACATCAGC+AGG | - | chr8.1:29727703-29727722 | None:intergenic | 30.0% | |
ACTCAACAACTATTGATATG+TGG | + | chr8.1:29727572-29727591 | MS.gene76354:intron | 30.0% | |
ACTCAATAGATTGATGTGTA+TGG | + | chr8.1:29726282-29726301 | MS.gene76354:intron | 30.0% | |
CTAGATAAACAATAGTGCTA+TGG | + | chr8.1:29727878-29727897 | MS.gene76354:intron | 30.0% | |
TGAGTAGTCTAAGAATACAA+AGG | + | chr8.1:29728038-29728057 | MS.gene76354:intron | 30.0% | |
TTATAAAACTCTCACCAAGA+AGG | + | chr8.1:29726444-29726463 | MS.gene76354:intron | 30.0% | |
TTGAGTTCCTTCACTAAATT+TGG | + | chr8.1:29728072-29728091 | MS.gene76354:intron | 30.0% | |
TTTACTGCTGTATATTTGTG+CGG | + | chr8.1:29727338-29727357 | MS.gene76354:intron | 30.0% | |
! | AAGTAAACTTGTCTCTGAAA+AGG | + | chr8.1:29726856-29726875 | MS.gene76354:intron | 30.0% |
! | CAAGAGGATCATTTATTTCT+AGG | + | chr8.1:29726576-29726595 | MS.gene76354:intron | 30.0% |
! | CAGAAACATGTTTTGTGTAT+TGG | - | chr8.1:29727186-29727205 | None:intergenic | 30.0% |
! | GGTTTCCGGTTAAATTTTTA+GGG | + | chr8.1:29727469-29727488 | MS.gene76354:intron | 30.0% |
! | GTGGGTATAGATTATGATTT+TGG | + | chr8.1:29727830-29727849 | MS.gene76354:intron | 30.0% |
! | GTTAAGTATTGCTCAAATTC+AGG | + | chr8.1:29726312-29726331 | MS.gene76354:intron | 30.0% |
! | TGGTTTCCGGTTAAATTTTT+AGG | + | chr8.1:29727468-29727487 | MS.gene76354:intron | 30.0% |
! | TGTTTTGTGTATTGGATACT+TGG | - | chr8.1:29727178-29727197 | None:intergenic | 30.0% |
ACCGTCCCTAAAAATTTAAC+CGG | - | chr8.1:29727477-29727496 | None:intergenic | 35.0% | |
ACTTCAACGAAAAATGGTAG+AGG | - | chr8.1:29727797-29727816 | None:intergenic | 35.0% | |
AGCTAATGGTTATTCCATAG+TGG | + | chr8.1:29728242-29728261 | MS.gene76354:intron | 35.0% | |
AGTTCCTTCACTAAATTTGG+AGG | + | chr8.1:29728075-29728094 | MS.gene76354:intron | 35.0% | |
CATTCATAAACCTTGTCACT+TGG | - | chr8.1:29725962-29725981 | None:intergenic | 35.0% | |
CTCAGGTATTTAAGCTATGT+CGG | + | chr8.1:29727511-29727530 | MS.gene76354:intron | 35.0% | |
CTTCAACGAAAAATGGTAGA+GGG | - | chr8.1:29727796-29727815 | None:intergenic | 35.0% | |
GAATGTTGCAATGGAAATTC+TGG | + | chr8.1:29726965-29726984 | MS.gene76354:intron | 35.0% | |
GATGAGATTGGATTATGTGT+AGG | + | chr8.1:29726536-29726555 | MS.gene76354:intron | 35.0% | |
GTTCCTTCACTAAATTTGGA+GGG | + | chr8.1:29728076-29728095 | MS.gene76354:intron | 35.0% | |
TGTGTATTGGATACTTGGTT+TGG | - | chr8.1:29727173-29727192 | None:intergenic | 35.0% | |
TTTATGTGTCTAACTGCCAA+TGG | + | chr8.1:29726943-29726962 | MS.gene76354:intron | 35.0% | |
TTTCCATTGCAACATTCCAT+TGG | - | chr8.1:29726962-29726981 | None:intergenic | 35.0% | |
! | ATTGCTCAAATTCAGGTTCT+TGG | + | chr8.1:29726319-29726338 | MS.gene76354:intron | 35.0% |
! | GACAAGTTTACTTGATGACA+AGG | - | chr8.1:29726849-29726868 | None:intergenic | 35.0% |
! | TATGAATGCATTCTTTTCCG+AGG | + | chr8.1:29725974-29725993 | MS.gene76354:CDS | 35.0% |
! | TGGTGCAACTGATGTATTTT+GGG | + | chr8.1:29726339-29726358 | MS.gene76354:intron | 35.0% |
! | TTAACCGGAAACCAATTTTC+CGG | - | chr8.1:29727462-29727481 | None:intergenic | 35.0% |
! | TTACCTTAATGTCACTTCCT+CGG | - | chr8.1:29725994-29726013 | None:intergenic | 35.0% |
! | TTGGTGCAACTGATGTATTT+TGG | + | chr8.1:29726338-29726357 | MS.gene76354:intron | 35.0% |
!! | AAGCTCTAGAGCAATTAATC+TGG | + | chr8.1:29727731-29727750 | MS.gene76354:CDS | 35.0% |
!! | AGACTGGTGTTTTGAATGAA+AGG | + | chr8.1:29728154-29728173 | MS.gene76354:intron | 35.0% |
!! | GACTGGTGTTTTGAATGAAA+GGG | + | chr8.1:29728155-29728174 | MS.gene76354:intron | 35.0% |
!! | GTTAAATTTTTAGGGACGGT+TGG | + | chr8.1:29727477-29727496 | MS.gene76354:intron | 35.0% |
!! | TCCGGTTAAATTTTTAGGGA+CGG | + | chr8.1:29727473-29727492 | MS.gene76354:intron | 35.0% |
!!! | TCTGTTTTTTTGGCCTCTTT+CGG | + | chr8.1:29727432-29727451 | MS.gene76354:intron | 35.0% |
!!! | TTGCTGCTGTTCTGTTTTTT+TGG | + | chr8.1:29727422-29727441 | MS.gene76354:intron | 35.0% |
AATTTGGAGGGTTCAAATGC+TGG | + | chr8.1:29728088-29728107 | MS.gene76354:intron | 40.0% | |
AGAAGGCTTAATCGACTGAT+TGG | + | chr8.1:29726461-29726480 | MS.gene76354:intron | 40.0% | |
AGCTTGGAATGATGAACAAG+AGG | + | chr8.1:29726560-29726579 | MS.gene76354:intron | 40.0% | |
ATCAGTCGATTAAGCCTTCT+TGG | - | chr8.1:29726461-29726480 | None:intergenic | 40.0% | |
ATCCAATCTCATCAGTTGTG+TGG | - | chr8.1:29726529-29726548 | None:intergenic | 40.0% | |
ATGATTGTTGTGTTCTAGCG+TGG | + | chr8.1:29726997-29727016 | MS.gene76354:intron | 40.0% | |
CAGAACAGCAGCAAAACAAA+TGG | - | chr8.1:29727416-29727435 | None:intergenic | 40.0% | |
CGACATAGCTTAAATACCTG+AGG | - | chr8.1:29727513-29727532 | None:intergenic | 40.0% | |
GAACCCTCCAAATTTAGTGA+AGG | - | chr8.1:29728082-29728101 | None:intergenic | 40.0% | |
GAAGGCTTAATCGACTGATT+GGG | + | chr8.1:29726462-29726481 | MS.gene76354:intron | 40.0% | |
TACCACACAACTGATGAGAT+TGG | + | chr8.1:29726524-29726543 | MS.gene76354:intron | 40.0% | |
TGCTGCAGAAAACAAAGACA+AGG | - | chr8.1:29726779-29726798 | None:intergenic | 40.0% | |
TGGATTATGTGTAGGTAGCT+TGG | + | chr8.1:29726544-29726563 | MS.gene76354:intron | 40.0% | |
TTGAGTTCAAGCAAAACTCC+AGG | - | chr8.1:29728135-29728154 | None:intergenic | 40.0% | |
TTTCCGAGGAAGTGACATTA+AGG | + | chr8.1:29725988-29726007 | MS.gene76354:CDS | 40.0% | |
! | GGTGCAACTGATGTATTTTG+GGG | + | chr8.1:29726340-29726359 | MS.gene76354:intron | 40.0% |
! | GTTTTGCTTGAACTCAAGAC+TGG | + | chr8.1:29728138-29728157 | MS.gene76354:intron | 40.0% |
! | TCATAAACCTTGTCACTTGG+AGG | - | chr8.1:29725959-29725978 | None:intergenic | 40.0% |
!! | GTCTGTTTTCTTGTCGTTTG+TGG | + | chr8.1:29727360-29727379 | MS.gene76354:intron | 40.0% |
!!! | CTGTTTTTTTGGCCTCTTTC+GGG | + | chr8.1:29727433-29727452 | MS.gene76354:intron | 40.0% |
!!! | TGTTTTTTTGGCCTCTTTCG+GGG | + | chr8.1:29727434-29727453 | MS.gene76354:intron | 40.0% |
!!! | TTTAGGGACGGTTGGTTTTT+AGG | + | chr8.1:29727485-29727504 | MS.gene76354:intron | 40.0% |
AAACTCCAGGTACTCCAGTA+TGG | - | chr8.1:29728122-29728141 | None:intergenic | 45.0% | |
AAATGGTAGAGGGCAATGCA+TGG | - | chr8.1:29727786-29727805 | None:intergenic | 45.0% | |
ACAAGTACCTCCAAGTGACA+AGG | + | chr8.1:29725949-29725968 | MS.gene76354:CDS | 45.0% | |
ACAGGGGAGTTAATAAGGCT+TGG | + | chr8.1:29726117-29726136 | MS.gene76354:intron | 45.0% | |
ACAGTGGGGAGAAGAAAAGA+TGG | + | chr8.1:29725923-29725942 | MS.gene76354:CDS | 45.0% | |
CGGCAAGCAAATTCGAATCT+GGG | + | chr8.1:29727978-29727997 | MS.gene76354:intron | 45.0% | |
CTGCCAATGGAATGTTGCAA+TGG | + | chr8.1:29726956-29726975 | MS.gene76354:intron | 45.0% | |
TCGGCAAGCAAATTCGAATC+TGG | + | chr8.1:29727977-29727996 | MS.gene76354:intron | 45.0% | |
! | GCTATGGGTTGAATTACTCG+AGG | + | chr8.1:29727894-29727913 | MS.gene76354:intron | 45.0% |
! | TTCTTGTCGTTTGTGGCCTT+TGG | + | chr8.1:29727367-29727386 | MS.gene76354:intron | 45.0% |
!!! | GGTTGGTTTTTAGGTTCCTC+AGG | + | chr8.1:29727494-29727513 | MS.gene76354:intron | 45.0% |
ACAAGCCTCAACCGAACCAA+AGG | - | chr8.1:29727386-29727405 | None:intergenic | 50.0% | |
CCTTATTAACTCCCCTGTGC+GGG | - | chr8.1:29726115-29726134 | None:intergenic | 50.0% | |
CTTATTAACTCCCCTGTGCG+GGG | - | chr8.1:29726114-29726133 | None:intergenic | 50.0% | |
GTCGTTTGTGGCCTTTGGTT+CGG | + | chr8.1:29727372-29727391 | MS.gene76354:intron | 50.0% | |
! | AGCATCCATACTGGAGTACC+TGG | + | chr8.1:29728114-29728133 | MS.gene76354:intron | 50.0% |
! | GCCTTATTAACTCCCCTGTG+CGG | - | chr8.1:29726116-29726135 | None:intergenic | 50.0% |
! | GGCTCCGGAAAATTGGTTTC+CGG | + | chr8.1:29727455-29727474 | MS.gene76354:intron | 50.0% |
! | TGCTGGTCTAGCATCCATAC+TGG | + | chr8.1:29728105-29728124 | MS.gene76354:intron | 50.0% |
CCCGCACAGGGGAGTTAATA+AGG | + | chr8.1:29726112-29726131 | MS.gene76354:intron | 55.0% | |
CTTTCGGGGCTCCGGAAAAT+TGG | + | chr8.1:29727448-29727467 | MS.gene76354:intron | 55.0% | |
TGGTAGAGGGCAATGCATGG+AGG | - | chr8.1:29727783-29727802 | None:intergenic | 55.0% | |
! | ATTTTCCGGAGCCCCGAAAG+AGG | - | chr8.1:29727448-29727467 | None:intergenic | 55.0% |
!! | TGTGGCCTTTGGTTCGGTTG+AGG | + | chr8.1:29727378-29727397 | MS.gene76354:intron | 55.0% |
AAGCATCTCACCCCGCACAG+GGG | + | chr8.1:29726101-29726120 | MS.gene76354:intron | 60.0% | |
TTTGGCCTCTTTCGGGGCTC+CGG | + | chr8.1:29727440-29727459 | MS.gene76354:intron | 60.0% | |
! | GAAGCATCTCACCCCGCACA+GGG | + | chr8.1:29726100-29726119 | MS.gene76354:intron | 60.0% |
!! | AGAAGCATCTCACCCCGCAC+AGG | + | chr8.1:29726099-29726118 | MS.gene76354:intron | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8.1 | gene | 29725918 | 29728407 | 29725918 | ID=MS.gene76354 |
chr8.1 | mRNA | 29725918 | 29728407 | 29725918 | ID=MS.gene76354.t1;Parent=MS.gene76354 |
chr8.1 | exon | 29725918 | 29726009 | 29725918 | ID=MS.gene76354.t1.exon1;Parent=MS.gene76354.t1 |
chr8.1 | CDS | 29725918 | 29726009 | 29725918 | ID=cds.MS.gene76354.t1;Parent=MS.gene76354.t1 |
chr8.1 | exon | 29726859 | 29726877 | 29726859 | ID=MS.gene76354.t1.exon2;Parent=MS.gene76354.t1 |
chr8.1 | CDS | 29726859 | 29726877 | 29726859 | ID=cds.MS.gene76354.t1;Parent=MS.gene76354.t1 |
chr8.1 | exon | 29727679 | 29727752 | 29727679 | ID=MS.gene76354.t1.exon3;Parent=MS.gene76354.t1 |
chr8.1 | CDS | 29727679 | 29727752 | 29727679 | ID=cds.MS.gene76354.t1;Parent=MS.gene76354.t1 |
chr8.1 | exon | 29728395 | 29728407 | 29728395 | ID=MS.gene76354.t1.exon4;Parent=MS.gene76354.t1 |
chr8.1 | CDS | 29728395 | 29728407 | 29728395 | ID=cds.MS.gene76354.t1;Parent=MS.gene76354.t1 |
Gene Sequence |
Protein sequence |