AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene76585

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene76585.t1 MTR_5g040770 72.937 303 34 1 1 303 586 840 4.24e-123 372
MS.gene76585.t1 MTR_5g037450 59.868 304 118 3 1 303 825 1125 1.03e-111 348
MS.gene76585.t1 MTR_5g035530 56.579 304 129 2 1 303 700 1001 5.62e-104 325
MS.gene76585.t1 MTR_3g026660 59.928 277 109 1 1 277 805 1079 1.07e-97 310
MS.gene76585.t1 MTR_3g026660 59.928 277 109 1 1 277 862 1136 3.40e-97 310
MS.gene76585.t1 MTR_5g035280 57.609 276 115 1 1 276 818 1091 8.50e-91 293
MS.gene76585.t1 MTR_5g037500 47.826 276 94 2 2 277 757 982 2.88e-58 201
MS.gene76585.t1 MTR_5g037460 51.630 184 66 1 120 303 666 826 8.54e-51 179
MS.gene76585.t1 MTR_5g035200 41.219 279 90 5 3 281 159 363 6.20e-50 169
MS.gene76585.t1 MTR_5g035480 42.491 273 105 4 2 273 775 996 5.88e-49 175
MS.gene76585.t1 MTR_5g035240 57.325 157 65 1 3 159 818 972 2.15e-47 170
MS.gene76585.t1 MTR_6g046750 34.915 295 147 5 2 272 160 433 1.74e-42 152
MS.gene76585.t1 MTR_6g046750 34.843 287 142 5 10 272 121 386 3.45e-41 147
MS.gene76585.t1 MTR_0144s0010 36.120 299 156 8 1 277 119 404 1.12e-40 147
MS.gene76585.t1 MTR_8g036195 36.877 301 155 8 2 279 793 1081 1.41e-40 150
MS.gene76585.t1 MTR_3g086070 34.680 297 159 5 2 277 808 1090 1.87e-37 142
MS.gene76585.t1 MTR_6g046620 35.216 301 148 7 2 282 758 1031 3.17e-37 141
MS.gene76585.t1 MTR_0133s0020 35.154 293 147 6 2 272 817 1088 1.07e-36 139
MS.gene76585.t1 MTR_3g023320 34.853 307 160 7 2 282 811 1103 1.20e-36 139
MS.gene76585.t1 MTR_6g046760 34.122 296 153 6 2 276 157 431 1.47e-36 136
MS.gene76585.t1 MTR_0256s0050 35.197 304 161 6 2 283 778 1067 4.05e-36 137
MS.gene76585.t1 MTR_6g052455 34.884 301 150 7 1 277 702 980 8.26e-36 137
MS.gene76585.t1 MTR_0511s0020 35.548 301 147 8 1 277 794 1071 2.30e-35 135
MS.gene76585.t1 MTR_6g046130 35.932 295 136 7 2 272 804 1069 4.49e-35 135
MS.gene76585.t1 MTR_6g046480 35.786 299 142 8 2 277 807 1078 6.09e-35 134
MS.gene76585.t1 MTR_6g052760 33.981 309 157 7 1 284 812 1098 1.09e-34 134
MS.gene76585.t1 MTR_5g035450 40.670 209 106 5 67 275 90 280 7.85e-34 128
MS.gene76585.t1 MTR_6g046570 33.993 303 154 6 2 280 800 1080 1.08e-33 130
MS.gene76585.t1 MTR_6g047450 32.997 297 163 7 2 272 809 1095 1.69e-33 130
MS.gene76585.t1 MTR_6g046550 35.179 307 145 7 2 280 378 658 8.90e-33 127
MS.gene76585.t1 MTR_4g055630 34.892 278 126 7 2 277 818 1042 1.62e-32 127
MS.gene76585.t1 MTR_6g046440 33.779 299 162 6 1 277 751 1035 7.70e-32 125
MS.gene76585.t1 MTR_0133s0030 33.882 304 157 9 2 278 808 1094 2.62e-30 121
MS.gene76585.t1 MTR_5g071780 39.806 206 115 5 2 206 812 1009 1.69e-29 118
MS.gene76585.t1 MTR_6g046930 32.667 300 156 9 2 272 805 1087 6.66e-29 117
MS.gene76585.t1 MTR_5g071220 42.077 183 100 4 2 183 816 993 1.43e-28 115
MS.gene76585.t1 MTR_5g071220 42.077 183 100 4 2 183 816 993 1.56e-28 115
MS.gene76585.t1 MTR_5g071823 40.659 182 102 4 2 182 813 989 3.20e-28 115
MS.gene76585.t1 MTR_5g071823 30.037 273 149 9 28 277 759 1012 3.30e-18 85.5
MS.gene76585.t1 MTR_5g071850 40.659 182 102 4 2 182 813 989 3.20e-28 115
MS.gene76585.t1 MTR_5g071850 30.037 273 149 9 28 277 759 1012 3.30e-18 85.5
MS.gene76585.t1 MTR_0511s0010 35.648 216 116 4 88 281 23 237 5.13e-28 108
MS.gene76585.t1 MTR_7g071940 42.623 183 99 4 2 183 807 984 6.62e-28 114
MS.gene76585.t1 MTR_7g071940 33.333 168 91 6 120 277 850 1006 6.80e-16 78.6
MS.gene76585.t1 MTR_1g022380 34.783 207 126 5 2 207 809 1007 8.97e-28 113
MS.gene76585.t1 MTR_5g072140 43.103 174 94 3 2 174 771 940 4.27e-27 111
MS.gene76585.t1 MTR_0230s0010 32.234 273 144 6 1 251 753 1006 1.07e-26 110
MS.gene76585.t1 MTR_5g070960 38.462 208 119 5 2 208 817 1016 2.22e-26 109
MS.gene76585.t1 MTR_5g070960 32.653 245 146 10 43 277 781 1016 1.93e-14 74.3
MS.gene76585.t1 MTR_5g034770 36.719 256 140 8 37 275 625 875 6.55e-26 108
MS.gene76585.t1 MTR_6g046450 38.596 171 92 4 113 282 939 1097 2.64e-25 106
MS.gene76585.t1 MTR_1g023600 39.444 180 103 4 2 180 811 985 3.27e-25 106
MS.gene76585.t1 MTR_1g023600 31.022 274 145 11 27 278 760 1011 5.40e-15 75.9
MS.gene76585.t1 MTR_5g028750 28.627 255 163 6 26 275 831 1071 3.98e-25 105
MS.gene76585.t1 MTR_6g046900 30.263 304 154 5 35 280 75 378 1.09e-24 102
MS.gene76585.t1 MTR_5g028340 27.682 289 168 7 2 273 811 1075 3.86e-23 100
MS.gene76585.t1 MTR_5g028420 30.830 253 152 8 26 273 848 1082 4.66e-23 99.8
MS.gene76585.t1 MTR_8g445980 30.502 259 133 5 67 279 586 843 1.16e-22 98.6
MS.gene76585.t1 MTR_0534s0010 33.854 192 104 4 90 281 2 170 3.12e-22 91.7
MS.gene76585.t1 MTR_4g119140 30.000 260 159 6 23 279 475 714 6.79e-22 96.3
MS.gene76585.t1 MTR_4g094540 34.082 267 158 11 24 279 595 854 6.93e-22 96.3
MS.gene76585.t1 MTR_5g028290 27.839 273 169 7 26 284 867 1125 1.37e-21 95.5
MS.gene76585.t1 MTR_5g076840 32.474 194 124 3 88 277 663 853 1.67e-21 95.1
MS.gene76585.t1 MTR_5g028610 30.796 289 160 9 2 277 814 1075 1.97e-21 95.1
MS.gene76585.t1 MTR_5g071470 38.251 183 84 5 2 183 811 965 2.23e-21 94.7
MS.gene76585.t1 MTR_5g071470 34.821 224 129 7 64 277 771 987 9.49e-17 81.3
MS.gene76585.t1 MTR_4g126000 39.011 182 105 4 2 183 678 853 2.70e-21 94.7
MS.gene76585.t1 MTR_5g072340 38.251 183 84 4 2 183 813 967 2.16e-20 92.0
MS.gene76585.t1 MTR_5g072340 31.250 256 143 10 32 280 763 992 4.94e-15 75.9
MS.gene76585.t1 MTR_7g078300 30.597 268 132 5 62 279 585 848 2.24e-20 91.7
MS.gene76585.t1 MTR_5g071800 32.197 264 154 9 32 280 761 1014 1.92e-19 89.0
MS.gene76585.t1 MTR_1g078490 28.571 301 140 8 29 279 567 842 2.38e-19 89.0
MS.gene76585.t1 MTR_5g071670 33.597 253 135 10 32 277 754 980 4.40e-19 88.2
MS.gene76585.t1 MTR_5g071670 34.272 213 108 6 2 213 804 985 6.15e-19 87.8
MS.gene76585.t1 MTR_5g028070 29.293 198 133 3 94 285 1047 1243 4.50e-19 88.2
MS.gene76585.t1 MTR_1g047910 31.818 198 125 5 86 277 669 862 1.42e-18 86.7
MS.gene76585.t1 MTR_5g070490 36.066 183 88 4 2 183 808 962 1.50e-18 86.7
MS.gene76585.t1 MTR_5g070490 32.394 213 135 6 70 276 774 983 3.11e-13 70.5
MS.gene76585.t1 MTR_5g070470 32.258 248 141 8 70 297 782 1022 4.16e-18 85.1
MS.gene76585.t1 MTR_5g070470 34.783 184 89 5 2 183 816 970 1.74e-16 80.5
MS.gene76585.t1 MTR_7g491180 29.851 201 122 4 86 277 671 861 5.93e-18 84.7
MS.gene76585.t1 MTR_7g091190 29.851 201 122 4 86 277 671 861 5.93e-18 84.7
MS.gene76585.t1 MTR_7g078640 29.960 247 121 5 82 279 572 815 8.23e-18 84.3
MS.gene76585.t1 MTR_4g119195 28.195 266 135 7 62 277 589 848 3.04e-17 82.4
MS.gene76585.t1 MTR_0144s0060 36.019 211 121 6 45 250 801 1002 9.75e-17 81.3
MS.gene76585.t1 MTR_8g445160 28.315 279 138 6 44 279 421 680 1.74e-16 80.1
MS.gene76585.t1 MTR_5g071310 31.356 236 139 7 70 289 744 972 1.88e-16 80.5
MS.gene76585.t1 MTR_5g071310 31.100 209 89 6 3 183 751 932 1.91e-14 74.3
MS.gene76585.t1 MTR_5g071310 32.317 164 82 3 2 140 778 937 4.51e-12 67.0
MS.gene76585.t1 MTR_7g091140 29.018 224 148 5 62 281 649 865 1.92e-16 80.5
MS.gene76585.t1 MTR_3g015560 35.338 133 82 2 148 277 709 840 7.80e-16 78.2
MS.gene76585.t1 MTR_2g062360 27.132 258 153 4 53 278 343 597 9.55e-16 77.8
MS.gene76585.t1 MTR_5g040900 29.392 296 150 11 38 277 590 882 6.03e-15 75.9
MS.gene76585.t1 MTR_5g040900 35.366 164 95 6 27 183 701 860 7.69e-12 66.2
MS.gene76585.t1 MTR_8g037220 31.928 166 95 3 115 279 1815 1963 7.92e-15 75.5
MS.gene76585.t1 MTR_8g037220 31.928 166 95 3 115 279 1594 1742 7.95e-15 75.5
MS.gene76585.t1 MTR_3g086080 31.343 201 85 6 87 279 65 220 2.32e-14 71.6
MS.gene76585.t1 MTR_7g091110 28.571 196 131 4 86 277 650 840 4.38e-14 73.2
MS.gene76585.t1 MTR_7g022290 38.983 118 66 2 161 272 395 512 7.01e-14 72.0
MS.gene76585.t1 MTR_2g078070 28.169 284 159 7 2 275 837 1085 1.74e-13 71.2
MS.gene76585.t1 MTR_3g070650 27.419 310 167 11 28 283 194 499 5.44e-13 69.3
MS.gene76585.t1 MTR_7g491190 25.287 261 142 6 67 278 557 813 5.45e-13 69.7
MS.gene76585.t1 MTR_7g091200 25.287 261 142 6 67 278 576 832 6.06e-13 69.7
MS.gene76585.t1 MTR_8g011600 26.848 257 122 4 29 279 598 794 7.25e-13 69.3
MS.gene76585.t1 MTR_8g011850 31.818 176 99 5 97 270 1852 2008 2.77e-12 67.8
MS.gene76585.t1 MTR_3g071080 27.097 310 168 10 28 283 113 418 6.70e-12 65.9
MS.gene76585.t1 MTR_3g071040 27.097 310 168 10 28 283 113 418 6.70e-12 65.9
MS.gene76585.t1 MTR_3g071010 27.097 310 168 10 28 283 122 427 7.15e-12 65.9
MS.gene76585.t1 MTR_6g084540 29.384 211 131 7 73 278 30 227 1.70e-11 63.2
MS.gene76585.t1 MTR_8g011180 26.400 250 125 7 26 275 741 931 2.60e-11 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene76585.t1 AT1G69550 30.859 256 166 6 1 251 956 1205 8.65e-12 66.2

Find 72 sgRNAs with CRISPR-Local

Find 69 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGAAGTGGTGGTCGATATTA+TGG 0.244977 5.1:-30934374 MS.gene76585:CDS
TCAGGCAAATATTCTAGTTT+TGG 0.266038 5.1:+30934620 None:intergenic
AACTAGAATATTTGCCTGAT+TGG 0.273646 5.1:-30934616 MS.gene76585:CDS
TGAAGGTTAATGATTTCATT+TGG 0.290980 5.1:+30934890 None:intergenic
CCTCCCTTGATAGCCTTATC+AGG 0.309794 5.1:+30935191 None:intergenic
GGGAAACCTTTCCTTACTTC+AGG 0.321971 5.1:-30934591 MS.gene76585:CDS
GAACAATGGTGAACCCTATA+TGG 0.332439 5.1:+30934325 None:intergenic
CAAGGCAAACCAGACAAATT+AGG 0.335148 5.1:+30935118 None:intergenic
ATTTGGGAGTACCTCGAGTT+TGG 0.349835 5.1:+30934907 None:intergenic
CTTGATAGCCTTATCAGGTT+TGG 0.357678 5.1:+30935196 None:intergenic
TTCCTAGGGTACTCCATATA+GGG 0.360056 5.1:-30934338 None:intergenic
TTTCCTAGGGTACTCCATAT+AGG 0.360732 5.1:-30934339 None:intergenic
AGTTGGAGGTTTAATGGCTT+TGG 0.362956 5.1:-30935242 None:intergenic
GCTGGAAGACAGCTCAAATT+AGG 0.365091 5.1:+30934548 None:intergenic
GGAAGTGATAAACAAGGATA+TGG 0.372171 5.1:-30934398 MS.gene76585:CDS
TATAGAGAAGCGATGCAAAA+AGG 0.373292 5.1:-30934471 MS.gene76585:CDS
CATGTTCAGCGTATTGAAAT+AGG 0.381179 5.1:-30934419 MS.gene76585:CDS
GAAGGTTAATGATTTCATTT+GGG 0.386733 5.1:+30934891 None:intergenic
TGGTGCAAACTTTCTACTTC+CGG 0.391902 5.1:+30934692 None:intergenic
ACTGAATGTCCTAATTTGTC+TGG 0.395236 5.1:-30935127 MS.gene76585:CDS
TTGCATCGCTTCTCTATATG+AGG 0.396418 5.1:+30934476 None:intergenic
GGGGCCAATGCAGGTTTCCT+AGG 0.399884 5.1:-30934353 MS.gene76585:CDS
CTTGCATCTGTAAAGACATT+AGG 0.404029 5.1:-30934944 MS.gene76585:CDS
AATAATTAATTCCTGAAGTA+AGG 0.419317 5.1:+30934580 None:intergenic
ATAAGCTGCCAAACCTGATA+AGG 0.430834 5.1:-30935204 MS.gene76585:CDS
GAAGTGGTGGTCGATATTAT+GGG 0.435253 5.1:-30934373 MS.gene76585:CDS
AGGTTTACTAAGATGTCATC+TGG 0.435722 5.1:+30934965 None:intergenic
CAAACCTGATAAGGCTATCA+AGG 0.442704 5.1:-30935195 MS.gene76585:CDS
GAATATTTGCCTGATTGGTT+GGG 0.442787 5.1:-30934611 MS.gene76585:CDS
CGATATTATGGGGCCAATGC+AGG 0.443408 5.1:-30934362 MS.gene76585:CDS
CCAATGCCTCTAGACTAGTT+AGG 0.446409 5.1:+30934729 None:intergenic
GAAAGGTTTCCCAACCAATC+AGG 0.451382 5.1:+30934602 None:intergenic
AGAATATTTGCCTGATTGGT+TGG 0.459559 5.1:-30934612 MS.gene76585:CDS
AAGTCATATGTTGCAAGGCC+TGG 0.479321 5.1:+30934672 None:intergenic
CCTAACTAGTCTAGAGGCAT+TGG 0.492146 5.1:-30934729 MS.gene76585:CDS
ATTGGTGATTGCTAGCTGTC+CGG 0.512676 5.1:-30934711 MS.gene76585:CDS
CTAAGACATTTGATGCTCGC+TGG 0.519257 5.1:+30934530 None:intergenic
ATTTGTATTTGTATACAGAA+GGG 0.522467 5.1:-30935078 MS.gene76585:CDS
TGACACAGTTGGTAATATAC+AGG 0.523586 5.1:+30934855 None:intergenic
CTAATGTCTTTACAGATGCA+AGG 0.530717 5.1:+30934945 None:intergenic
AAAAGGAAATAGGCGAGGAC+TGG 0.530743 5.1:-30934454 MS.gene76585:CDS
AAATACAAATTCTTGAGAGA+TGG 0.537084 5.1:+30935091 None:intergenic
AATTTGTATTTGTATACAGA+AGG 0.540948 5.1:-30935079 MS.gene76585:CDS
AAACAAGGATATGGTGGAAG+TGG 0.541890 5.1:-30934389 MS.gene76585:CDS
TTAATTCCTGAAGTAAGGAA+AGG 0.544753 5.1:+30934585 None:intergenic
CAGTTATTTGAAGTACACTC+AGG 0.550816 5.1:+30935146 None:intergenic
GGGCCAATGCAGGTTTCCTA+GGG 0.556392 5.1:-30934352 MS.gene76585:CDS
AGTTGGTAATATACAGGTGT+TGG 0.561908 5.1:+30934861 None:intergenic
AACCCTATATGGAGTACCCT+AGG 0.566175 5.1:+30934336 None:intergenic
CAAGGATATGGTGGAAGTGG+TGG 0.566807 5.1:-30934386 MS.gene76585:CDS
AGTGATAAACAAGGATATGG+TGG 0.570661 5.1:-30934395 MS.gene76585:CDS
CTTCTGACAGATTCAACTTG+TGG 0.578256 5.1:+30934762 None:intergenic
ATAAGGCTATCAAGGGAGGA+TGG 0.579010 5.1:-30935187 MS.gene76585:CDS
TGCATCGCTTCTCTATATGA+GGG 0.585319 5.1:+30934477 None:intergenic
TTGACAGATGAAGTATTGAA+AGG 0.593441 5.1:-30934821 MS.gene76585:CDS
AGTTATTTGAAGTACACTCA+GGG 0.593881 5.1:+30935147 None:intergenic
GGAAGTAGAAAGTTTGCACC+AGG 0.596438 5.1:-30934690 MS.gene76585:CDS
TTCTTGAGAGATGGAAGACA+AGG 0.598249 5.1:+30935100 None:intergenic
CACAAGTTGAATCTGTCAGA+AGG 0.600093 5.1:-30934761 MS.gene76585:CDS
GGAGTACCTCGAGTTTGGAG+TGG 0.600814 5.1:+30934912 None:intergenic
ACAGGTGTTGGAGAGCATGA+AGG 0.607382 5.1:+30934873 None:intergenic
CAGAGAAGTCATATGTTGCA+AGG 0.607722 5.1:+30934667 None:intergenic
GTACCCTAGGAAACCTGCAT+TGG 0.612577 5.1:+30934349 None:intergenic
AAACCTGATAAGGCTATCAA+GGG 0.618946 5.1:-30935194 MS.gene76585:CDS
TTACTAAGATGTCATCTGGA+AGG 0.622192 5.1:+30934969 None:intergenic
TATCTCTAGCAACTTGAGAG+AGG 0.629782 5.1:+30934793 None:intergenic
TCAATACCTAACTAGTCTAG+AGG 0.630493 5.1:-30934735 MS.gene76585:CDS
GAAATAGGAAGTGATAAACA+AGG 0.648366 5.1:-30934404 MS.gene76585:CDS
TGACTCAATAGTGACACAGT+TGG 0.655564 5.1:+30934844 None:intergenic
AAGTGGTGGTCGATATTATG+GGG 0.662871 5.1:-30934372 MS.gene76585:CDS
CCTGATAAGGCTATCAAGGG+AGG 0.667440 5.1:-30935191 MS.gene76585:CDS
TCATCACCACTCCAAACTCG+AGG 0.691363 5.1:-30934918 MS.gene76585:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAATTAATTCCTGAAGTA+AGG + chr5.1:30934992-30935011 None:intergenic 20.0%
!! AATTTGTATTTGTATACAGA+AGG - chr5.1:30934490-30934509 MS.gene76585:CDS 20.0%
!! ATTTGTATTTGTATACAGAA+GGG - chr5.1:30934491-30934510 MS.gene76585:CDS 20.0%
! AAATACAAATTCTTGAGAGA+TGG + chr5.1:30934481-30934500 None:intergenic 25.0%
! GAAGGTTAATGATTTCATTT+GGG + chr5.1:30934681-30934700 None:intergenic 25.0%
! TGAAGGTTAATGATTTCATT+TGG + chr5.1:30934682-30934701 None:intergenic 25.0%
AACTAGAATATTTGCCTGAT+TGG - chr5.1:30934953-30934972 MS.gene76585:CDS 30.0%
GAAATAGGAAGTGATAAACA+AGG - chr5.1:30935165-30935184 MS.gene76585:CDS 30.0%
TTAATTCCTGAAGTAAGGAA+AGG + chr5.1:30934987-30935006 None:intergenic 30.0%
! AGTTATTTGAAGTACACTCA+GGG + chr5.1:30934425-30934444 None:intergenic 30.0%
!! TTGACAGATGAAGTATTGAA+AGG - chr5.1:30934748-30934767 MS.gene76585:CDS 30.0%
!!! TCAGGCAAATATTCTAGTTT+TGG + chr5.1:30934952-30934971 None:intergenic 30.0%
AAACCTGATAAGGCTATCAA+GGG - chr5.1:30934375-30934394 MS.gene76585:CDS 35.0%
AAGCGATGCAAAAAGGAAAT+AGG - chr5.1:30935105-30935124 MS.gene76585:CDS 35.0%
AGAATATTTGCCTGATTGGT+TGG - chr5.1:30934957-30934976 MS.gene76585:CDS 35.0%
AGGTTTACTAAGATGTCATC+TGG + chr5.1:30934607-30934626 None:intergenic 35.0%
AGTGATAAACAAGGATATGG+TGG - chr5.1:30935174-30935193 MS.gene76585:CDS 35.0%
CATGTTCAGCGTATTGAAAT+AGG - chr5.1:30935150-30935169 MS.gene76585:CDS 35.0%
CTAATGTCTTTACAGATGCA+AGG + chr5.1:30934627-30934646 None:intergenic 35.0%
CTTGCATCTGTAAAGACATT+AGG - chr5.1:30934625-30934644 MS.gene76585:CDS 35.0%
GGAAGTGATAAACAAGGATA+TGG - chr5.1:30935171-30935190 MS.gene76585:CDS 35.0%
TATAGAGAAGCGATGCAAAA+AGG - chr5.1:30935098-30935117 MS.gene76585:CDS 35.0%
TTACTAAGATGTCATCTGGA+AGG + chr5.1:30934603-30934622 None:intergenic 35.0%
! ACTGAATGTCCTAATTTGTC+TGG - chr5.1:30934442-30934461 MS.gene76585:CDS 35.0%
! CAGTTATTTGAAGTACACTC+AGG + chr5.1:30934426-30934445 None:intergenic 35.0%
! GAATATTTGCCTGATTGGTT+GGG - chr5.1:30934958-30934977 MS.gene76585:CDS 35.0%
! TCAATACCTAACTAGTCTAG+AGG - chr5.1:30934834-30934853 MS.gene76585:CDS 35.0%
!! AGTTGGTAATATACAGGTGT+TGG + chr5.1:30934711-30934730 None:intergenic 35.0%
!! TGACACAGTTGGTAATATAC+AGG + chr5.1:30934717-30934736 None:intergenic 35.0%
AAGTGGTGGTCGATATTATG+GGG - chr5.1:30935197-30935216 MS.gene76585:CDS 40.0%
ATAAGCTGCCAAACCTGATA+AGG - chr5.1:30934365-30934384 MS.gene76585:CDS 40.0%
ATGCAAAAAGGAAATAGGCG+AGG - chr5.1:30935110-30935129 MS.gene76585:CDS 40.0%
CAAACCTGATAAGGCTATCA+AGG - chr5.1:30934374-30934393 MS.gene76585:CDS 40.0%
CAAGGCAAACCAGACAAATT+AGG + chr5.1:30934454-30934473 None:intergenic 40.0%
CAGAGAAGTCATATGTTGCA+AGG + chr5.1:30934905-30934924 None:intergenic 40.0%
CTTCTGACAGATTCAACTTG+TGG + chr5.1:30934810-30934829 None:intergenic 40.0%
GAAGTGGTGGTCGATATTAT+GGG - chr5.1:30935196-30935215 MS.gene76585:CDS 40.0%
TATCTCTAGCAACTTGAGAG+AGG + chr5.1:30934779-30934798 None:intergenic 40.0%
TGACTCAATAGTGACACAGT+TGG + chr5.1:30934728-30934747 None:intergenic 40.0%
TGCATCGCTTCTCTATATGA+GGG + chr5.1:30935095-30935114 None:intergenic 40.0%
TGGTGCAAACTTTCTACTTC+CGG + chr5.1:30934880-30934899 None:intergenic 40.0%
TTCTTGAGAGATGGAAGACA+AGG + chr5.1:30934472-30934491 None:intergenic 40.0%
TTGCATCGCTTCTCTATATG+AGG + chr5.1:30935096-30935115 None:intergenic 40.0%
! AAACAAGGATATGGTGGAAG+TGG - chr5.1:30935180-30935199 MS.gene76585:CDS 40.0%
! CACAAGTTGAATCTGTCAGA+AGG - chr5.1:30934808-30934827 MS.gene76585:CDS 40.0%
!! CTTGATAGCCTTATCAGGTT+TGG + chr5.1:30934376-30934395 None:intergenic 40.0%
AAAAGGAAATAGGCGAGGAC+TGG - chr5.1:30935115-30935134 MS.gene76585:CDS 45.0%
AAGTCATATGTTGCAAGGCC+TGG + chr5.1:30934900-30934919 None:intergenic 45.0%
ATAAGGCTATCAAGGGAGGA+TGG - chr5.1:30934382-30934401 MS.gene76585:CDS 45.0%
CTAAGACATTTGATGCTCGC+TGG + chr5.1:30935042-30935061 None:intergenic 45.0%
GAAAGGTTTCCCAACCAATC+AGG + chr5.1:30934970-30934989 None:intergenic 45.0%
GCTGGAAGACAGCTCAAATT+AGG + chr5.1:30935024-30935043 None:intergenic 45.0%
GGAAGTAGAAAGTTTGCACC+AGG - chr5.1:30934879-30934898 MS.gene76585:CDS 45.0%
GGAAGTGGTGGTCGATATTA+TGG - chr5.1:30935195-30935214 MS.gene76585:CDS 45.0%
GGGAAACCTTTCCTTACTTC+AGG - chr5.1:30934978-30934997 MS.gene76585:CDS 45.0%
! ATTGGTGATTGCTAGCTGTC+CGG - chr5.1:30934858-30934877 MS.gene76585:CDS 45.0%
! CCAATGCCTCTAGACTAGTT+AGG + chr5.1:30934843-30934862 None:intergenic 45.0%
! CCTAACTAGTCTAGAGGCAT+TGG - chr5.1:30934840-30934859 MS.gene76585:CDS 45.0%
!! ATTTGGGAGTACCTCGAGTT+TGG + chr5.1:30934665-30934684 None:intergenic 45.0%
CCTGATAAGGCTATCAAGGG+AGG - chr5.1:30934378-30934397 MS.gene76585:CDS 50.0%
CGATATTATGGGGCCAATGC+AGG - chr5.1:30935207-30935226 MS.gene76585:CDS 50.0%
GTACCCTAGGAAACCTGCAT+TGG + chr5.1:30935223-30935242 None:intergenic 50.0%
TCATCACCACTCCAAACTCG+AGG - chr5.1:30934651-30934670 MS.gene76585:CDS 50.0%
! CAAGGATATGGTGGAAGTGG+TGG - chr5.1:30935183-30935202 MS.gene76585:CDS 50.0%
!! ACAGGTGTTGGAGAGCATGA+AGG + chr5.1:30934699-30934718 None:intergenic 50.0%
!! CCTCCCTTGATAGCCTTATC+AGG + chr5.1:30934381-30934400 None:intergenic 50.0%
GGGCCAATGCAGGTTTCCTA+GGG - chr5.1:30935217-30935236 MS.gene76585:CDS 55.0%
! GGAGTACCTCGAGTTTGGAG+TGG + chr5.1:30934660-30934679 None:intergenic 55.0%
GGGGCCAATGCAGGTTTCCT+AGG - chr5.1:30935216-30935235 MS.gene76585:CDS 60.0%


Chromosome Type Strat End Strand Name
chr5.1 gene 30934340 30935251 30934340 ID=MS.gene76585
chr5.1 mRNA 30934340 30935251 30934340 ID=MS.gene76585.t1;Parent=MS.gene76585
chr5.1 exon 30934340 30935251 30934340 ID=MS.gene76585.t1.exon1;Parent=MS.gene76585.t1
chr5.1 CDS 30934340 30935251 30934340 ID=cds.MS.gene76585.t1;Parent=MS.gene76585.t1
Gene Sequence

>MS.gene76585

ATGGCTTTGGAAGCTCTTATTCTAGATAAGCTGCCAAACCTGATAAGGCTATCAAGGGAGGATGGAGAAAATATGTTCATGACCCTGAGTGTACTTCAAATAACTGAATGTCCTAATTTGTCTGGTTTGCCTTGTCTTCCATCTCTCAAGAATTTGTATTTGTATACAGAAGGGAAATACAATCAAGATTTACTAAGATCAGTTAAAAAAATTGATAGTCTTGAAACACTACATTTCTTGAAGAATGATGAGTTAACTTACCTTCCAGATGACATCTTAGTAAACCTTGCATCTGTAAAGACATTAGGCTTTCATCACCACTCCAAACTCGAGGTACTCCCAAATGAAATCATTAACCTTCATGCTCTCCAACACCTGTATATTACCAACTGTGTCACTATTGAGTCATTGACAGATGAAGTATTGAAAGGACTATCCTCTCTCAAGTTGCTAGAGATAGTGAAGTGCCACAAGTTGAATCTGTCAGAAGGTTTTCAATACCTAACTAGTCTAGAGGCATTGGTGATTGCTAGCTGTCCGGAAGTAGAAAGTTTGCACCAGGCCTTGCAACATATGACTTCTCTGCAATGCATAATATTGTCTGAACTTCCAAAACTAGAATATTTGCCTGATTGGTTGGGAAACCTTTCCTTACTTCAGGAATTAATTATTGCTCTGTGTCCTAATTTGAGCTGTCTTCCAGCGAGCATCAAATGTCTTAGCAGTTTGAAAAGATTGTGTATTCAAAGCTGCCCTCATATAGAGAAGCGATGCAAAAAGGAAATAGGCGAGGACTGGTCAAAAATAGCTCATGTTCAGCGTATTGAAATAGGAAGTGATAAACAAGGATATGGTGGAAGTGGTGGTCGATATTATGGGGCCAATGCAGGTTTCCTAGGGTACTCCATATAG
Protein sequence

>MS.gene76585.t1

MALEALILDKLPNLIRLSREDGENMFMTLSVLQITECPNLSGLPCLPSLKNLYLYTEGKYNQDLLRSVKKIDSLETLHFLKNDELTYLPDDILVNLASVKTLGFHHHSKLEVLPNEIINLHALQHLYITNCVTIESLTDEVLKGLSSLKLLEIVKCHKLNLSEGFQYLTSLEALVIASCPEVESLHQALQHMTSLQCIILSELPKLEYLPDWLGNLSLLQELIIALCPNLSCLPASIKCLSSLKRLCIQSCPHIEKRCKKEIGEDWSKIAHVQRIEIGSDKQGYGGSGGRYYGANAGFLGYSI