AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene055942


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene055942.t1 MTR_7g094190 95.164 579 27 1 1 578 2 580 0.0 1149
MS.gene055942.t1 MTR_7g094190 95.208 480 23 0 99 578 1 480 0.0 956
MS.gene055942.t1 MTR_7g094330 85.621 306 13 2 99 403 1 276 0.0 534
MS.gene055942.t1 MTR_7g117110 34.965 572 339 14 4 563 11 561 1.82e-96 306
MS.gene055942.t1 MTR_0102s0060 30.976 594 364 17 4 573 19 590 3.15e-90 290
MS.gene055942.t1 MTR_4g045903 30.890 573 372 10 3 566 29 586 3.59e-90 290
MS.gene055942.t1 MTR_8g027965 33.333 573 350 16 4 566 11 561 1.28e-89 288
MS.gene055942.t1 MTR_8g027920 32.578 574 353 14 4 566 11 561 3.26e-89 287
MS.gene055942.t1 MTR_8g027970 32.092 564 349 14 4 557 11 550 1.20e-87 283
MS.gene055942.t1 MTR_0035s0150 30.944 572 365 12 3 567 19 567 5.67e-85 276
MS.gene055942.t1 MTR_8g027955 31.763 573 359 13 4 566 18 568 1.03e-84 275
MS.gene055942.t1 MTR_2g081860 30.717 586 355 13 10 567 20 582 2.45e-82 270
MS.gene055942.t1 MTR_5g016320 29.636 577 375 11 4 567 21 579 1.92e-79 262
MS.gene055942.t1 MTR_8g467000 30.017 583 372 13 3 566 14 579 1.23e-77 257
MS.gene055942.t1 MTR_1g088765 29.649 570 374 11 4 557 11 569 8.84e-77 254
MS.gene055942.t1 MTR_7g117110 36.320 413 245 9 4 410 11 411 1.56e-69 230
MS.gene055942.t1 MTR_1g088765 30.769 429 279 6 141 557 3 425 2.41e-63 215
MS.gene055942.t1 MTR_8g037720 31.773 299 167 8 264 557 144 410 9.86e-35 136
MS.gene055942.t1 MTR_8g037720 35.156 128 79 2 4 131 2 125 5.10e-17 84.0
MS.gene055942.t1 MTR_1g047730 32.812 256 142 6 315 563 112 344 1.59e-30 123
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene055942.t1 AT1G28130 30.584 582 375 10 7 567 14 587 8.94e-93 297
MS.gene055942.t1 AT1G59500 31.588 573 370 12 2 567 19 576 3.27e-92 295
MS.gene055942.t1 AT1G48660 32.297 579 357 12 7 573 7 562 6.54e-90 288
MS.gene055942.t1 AT1G48660 32.241 580 359 13 7 573 7 565 9.81e-90 288
MS.gene055942.t1 AT1G23160 32.000 575 358 13 7 568 15 569 1.53e-89 288
MS.gene055942.t1 AT5G13320 32.105 570 360 12 8 567 13 565 2.30e-89 287
MS.gene055942.t1 AT5G13320 32.105 570 360 12 8 567 13 565 2.30e-89 287
MS.gene055942.t1 AT5G13320 32.105 570 360 12 8 567 28 580 4.63e-89 287
MS.gene055942.t1 AT4G37390 30.862 580 369 13 3 567 20 582 7.18e-86 279
MS.gene055942.t1 AT5G13360 31.478 575 356 12 10 567 17 570 5.63e-85 276
MS.gene055942.t1 AT5G13360 31.478 575 356 12 10 567 17 570 5.63e-85 276
MS.gene055942.t1 AT2G23170 30.366 573 374 12 3 567 19 574 1.47e-84 275
MS.gene055942.t1 AT5G13360 31.478 575 356 12 10 567 95 648 3.19e-84 276
MS.gene055942.t1 AT4G03400 31.175 587 362 14 4 566 9 577 2.09e-83 272
MS.gene055942.t1 AT4G03400 31.175 587 362 14 4 566 9 577 2.09e-83 272
MS.gene055942.t1 AT5G13370 31.349 571 363 11 10 567 17 571 2.67e-83 272
MS.gene055942.t1 AT5G51470 31.746 567 360 12 10 568 16 563 5.23e-83 271
MS.gene055942.t1 AT2G46370 32.465 576 352 18 4 566 22 573 5.72e-83 271
MS.gene055942.t1 AT2G46370 32.465 576 352 18 4 566 11 562 7.26e-83 270
MS.gene055942.t1 AT2G46370 32.465 576 352 18 4 566 11 562 7.26e-83 270
MS.gene055942.t1 AT2G14960 30.087 575 367 12 3 567 19 568 9.61e-83 270
MS.gene055942.t1 AT4G27260 31.606 579 360 13 7 566 25 586 1.44e-81 268
MS.gene055942.t1 AT5G13350 30.823 571 366 12 10 567 17 571 2.76e-80 264
MS.gene055942.t1 AT5G13350 30.823 571 366 12 10 567 17 571 2.76e-80 264
MS.gene055942.t1 AT5G54510 30.915 579 364 13 7 566 25 586 2.84e-80 264
MS.gene055942.t1 AT2G47750 31.414 573 356 16 4 560 9 560 1.80e-77 256
MS.gene055942.t1 AT5G13380 30.756 569 368 12 10 567 47 600 2.48e-76 254
MS.gene055942.t1 AT1G28130 32.266 406 254 5 180 567 42 444 1.03e-73 243
MS.gene055942.t1 AT2G46370 32.544 507 307 16 71 566 1 483 6.66e-72 239
MS.gene055942.t1 AT1G48670 29.545 572 333 12 7 573 8 514 1.16e-71 239
MS.gene055942.t1 AT5G51470 31.697 489 310 10 88 568 1 473 2.58e-71 237
MS.gene055942.t1 AT1G48670 33.416 401 251 6 178 573 14 403 1.36e-70 233

Find 116 sgRNAs with CRISPR-Local

Find 145 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAAAAGCTGCCTCCTTTCT+TGG 0.216718 7.4:+14942937 MS.gene055942:CDS
TACAACTAAACGCGGCTTAA+AGG 0.223574 7.4:+14943160 MS.gene055942:CDS
TCATGATTCCTTATAATCTT+TGG 0.243867 7.4:-14944367 None:intergenic
CTCTTCTCTGCTTCTTCTAT+AGG 0.284728 7.4:+14942594 MS.gene055942:CDS
TTTCGATCAGTTATCAGATT+TGG 0.291888 7.4:+14944306 MS.gene055942:CDS
AGTCCCCTGGAAGTTATAAT+TGG 0.292019 7.4:+14943251 MS.gene055942:CDS
TGTTGAGTTTGCAAGTTTCT+TGG 0.299538 7.4:+14944081 MS.gene055942:CDS
TCCTCTCTTGAGAATGGTTT+AGG 0.317132 7.4:+14944211 MS.gene055942:CDS
TCAAAGTAAGGGATCAGTTT+TGG 0.319994 7.4:-14942904 None:intergenic
CGATCAATCGTTCAACATAA+TGG 0.324848 7.4:+14942413 MS.gene055942:CDS
AGTTTGTGAAGGTAAGAATT+GGG 0.327806 7.4:+14943529 MS.gene055942:CDS
ATAAGCCACCAAAGATTATA+AGG 0.328611 7.4:+14944359 MS.gene055942:CDS
TCATGAAGTTGTCAAGTTCT+TGG 0.335217 7.4:+14944384 MS.gene055942:CDS
CATAGGGTCTTGTTTACATT+TGG 0.339542 7.4:-14943110 None:intergenic
GTCTTGTTTACATTTGGCCT+TGG 0.347840 7.4:-14943104 None:intergenic
ATAAATACCTTCAACTGCTT+TGG 0.348086 7.4:-14944118 None:intergenic
TAGATCCAATTATAACTTCC+AGG 0.355197 7.4:-14943256 None:intergenic
AGGAATCTTGATGTTATAGA+TGG 0.357105 7.4:+14943320 MS.gene055942:CDS
TACAAGGTGCAGAGAGAAAA+AGG 0.360703 7.4:+14944241 MS.gene055942:CDS
GGCGATATAGTTAGAGTTGT+TGG 0.370089 7.4:+14943911 MS.gene055942:CDS
GAAAGGCTTGAATCAAAGTA+AGG 0.381997 7.4:-14942916 None:intergenic
GTTTGCAAGTTTCTTGGATC+AGG 0.392810 7.4:+14944087 MS.gene055942:CDS
TCATCTGAAATTTCATGACT+TGG 0.392995 7.4:-14943437 None:intergenic
GCCACCTTCTCTGTGGCCTT+AGG 0.400497 7.4:+14943300 MS.gene055942:CDS
TAGTTTGTGAAGGTAAGAAT+TGG 0.402669 7.4:+14943528 MS.gene055942:CDS
TCATTCTCATTCATCTCAAA+TGG 0.405812 7.4:-14943782 None:intergenic
AGTCTAATAACTTGAAAGAA+TGG 0.406895 7.4:+14944164 MS.gene055942:CDS
AATTTCCATCTTGCAATAAG+AGG 0.409926 7.4:+14944031 MS.gene055942:CDS
TCTTCATACTCTTTACAAAC+TGG 0.413261 7.4:+14943194 MS.gene055942:CDS
TACACATAGCTGCTCCCATT+TGG 0.419597 7.4:-14943396 None:intergenic
CATGTTCTCCATCAGCCATC+TGG 0.419650 7.4:-14942544 None:intergenic
TGTATTTCCTCTCTTGAGAA+TGG 0.427898 7.4:+14944205 MS.gene055942:CDS
TAGTACGAACCGTGTTGTCT+CGG 0.428215 7.4:-14943729 None:intergenic
GGTGGCTTATATTGACTAGC+TGG 0.437086 7.4:-14944346 None:intergenic
TAAACGCGGCTTAAAGGTTA+TGG 0.437413 7.4:+14943166 MS.gene055942:CDS
TTTATCAAGTGCGTTACAAC+AGG 0.439169 7.4:+14943587 MS.gene055942:CDS
TTGTTTACATTTGGCCTTGG+AGG 0.440497 7.4:-14943101 None:intergenic
AAAGTCAACGTAATCATCAT+AGG 0.442906 7.4:-14942516 None:intergenic
ATAGATTGTTTCCGAATGTT+CGG 0.446193 7.4:+14943564 MS.gene055942:CDS
TGATTCCTTATAATCTTTGG+TGG 0.451928 7.4:-14944364 None:intergenic
TTAATCAAACCTATGGCATA+AGG 0.457001 7.4:-14943353 None:intergenic
TTTGCTTCTGAGTGTTGTGT+AGG 0.460989 7.4:+14943680 MS.gene055942:CDS
GAAGCTGTAATCAACACTAT+TGG 0.466393 7.4:+14943470 MS.gene055942:CDS
ACCTTCAACTGCTTTGGCAT+CGG 0.468257 7.4:-14944112 None:intergenic
GCGGGAGATGTACCGATTGT+AGG 0.468970 7.4:+14943647 MS.gene055942:CDS
AGTACGAACCGTGTTGTCTC+GGG 0.470826 7.4:-14943728 None:intergenic
GATCGAAAGCTCCTTGCCTT+AGG 0.471571 7.4:-14944291 None:intergenic
GTCTAATAACTTGAAAGAAT+GGG 0.471987 7.4:+14944165 MS.gene055942:CDS
GAAGGTATTTATAGAAGTAG+AGG 0.481000 7.4:+14944129 MS.gene055942:CDS
CACTTGATAAACCGAACATT+CGG 0.481170 7.4:-14943575 None:intergenic
AAATGCTTTAATCAAACCTA+TGG 0.485080 7.4:-14943360 None:intergenic
ATTAGTACTCCTTATGCCAT+AGG 0.485763 7.4:+14943344 MS.gene055942:CDS
GTTTGTGAAGGTAAGAATTG+GGG 0.497604 7.4:+14943530 MS.gene055942:CDS
ACAGCCTCGGTGACCAAGAA+AGG 0.505851 7.4:-14942950 None:intergenic
ACAAGACTTGTGAAAGTAGC+AGG 0.506161 7.4:-14942482 None:intergenic
GATCTTTGCGGCGTTGAGGT+TGG 0.507445 7.4:+14943833 MS.gene055942:CDS
ACCGATGCCAAAGCAGTTGA+AGG 0.508276 7.4:+14944111 MS.gene055942:CDS
GAGAATGATGAGGATGTTGT+TGG 0.515858 7.4:+14943797 MS.gene055942:CDS
AAGTAATCTCCTCCTACAAT+CGG 0.525370 7.4:-14943659 None:intergenic
TGCAACGTTCTCTAGTCCCC+TGG 0.529657 7.4:+14943238 MS.gene055942:CDS
ATACTCTTTACAAACTGGTA+AGG 0.530086 7.4:+14943199 MS.gene055942:CDS
TCTTGCAATAAGAGGTGCTA+CGG 0.531095 7.4:+14944039 MS.gene055942:CDS
AGAATCTCAGCTGAAGACTT+AGG 0.531876 7.4:-14943977 None:intergenic
AGAAGTAGAGGAAGTTCAAG+AGG 0.534240 7.4:+14944141 MS.gene055942:CDS
CTATTTGACAATTCATGTTG+AGG 0.536323 7.4:-14943497 None:intergenic
CAACTTGAGGTGATGAATTG+TGG 0.539457 7.4:-14943937 None:intergenic
TTTATCCACCAGATGGCTGA+TGG 0.540871 7.4:+14942536 MS.gene055942:CDS
AGAATAAGATTAGTTTGTGA+AGG 0.542973 7.4:+14943518 MS.gene055942:CDS
CAAATGTAAACAAGACCCTA+TGG 0.544695 7.4:+14943111 MS.gene055942:CDS
GGATGCAAAACATCATCAGT+TGG 0.547643 7.4:+14942382 MS.gene055942:CDS
GAGAACGTTGCAAGTTGTTG+AGG 0.552779 7.4:-14943227 None:intergenic
GAGCAAACAGTGGATCTTTG+CGG 0.554405 7.4:+14943821 MS.gene055942:CDS
AGATCCAATTATAACTTCCA+GGG 0.558522 7.4:-14943255 None:intergenic
TGTGAAGGTAAGAATTGGGG+TGG 0.563626 7.4:+14943533 MS.gene055942:CDS
TGTCAGCATAGAGAAACCAT+AGG 0.564785 7.4:-14943127 None:intergenic
AAATGGAAGAAACTCAAAGT+AGG 0.564938 7.4:-14943765 None:intergenic
AGTTATAATTGGATCTAATG+TGG 0.566485 7.4:+14943262 MS.gene055942:CDS
AACTCAAAGTAGGCAAAAGT+AGG 0.567325 7.4:-14943755 None:intergenic
CGTTGACTTTATCCACCAGA+TGG 0.567543 7.4:+14942529 MS.gene055942:CDS
GTTCTCCATCAGCCATCTGG+TGG 0.567675 7.4:-14942541 None:intergenic
AAGTCATGAAATTTCAGATG+AGG 0.571087 7.4:+14943439 MS.gene055942:CDS
GCTGTATCGCTGTTCTTCAA+AGG 0.571437 7.4:+14942968 MS.gene055942:CDS
AGTGGATCTTTGCGGCGTTG+AGG 0.572967 7.4:+14943829 MS.gene055942:CDS
CTTGCAATAAGAGGTGCTAC+GGG 0.573391 7.4:+14944040 MS.gene055942:CDS
TGGTTTAGGAGCATTGTACA+AGG 0.576214 7.4:+14944225 MS.gene055942:CDS
CTCATAACAAATTCAACTTG+AGG 0.577362 7.4:-14943950 None:intergenic
GATTCCTAAGGCCACAGAGA+AGG 0.577447 7.4:-14943304 None:intergenic
ACTTAATGATAATTATCCTA+AGG 0.579665 7.4:+14944275 MS.gene055942:CDS
ATGATAATTATCCTAAGGCA+AGG 0.584299 7.4:+14944280 MS.gene055942:CDS
GCTGTAATCAACACTATTGG+TGG 0.584574 7.4:+14943473 MS.gene055942:CDS
AAAGGCTTGAATCAAAGTAA+GGG 0.587333 7.4:-14942915 None:intergenic
GTCAGCATAGAGAAACCATA+GGG 0.587941 7.4:-14943126 None:intergenic
TCCTAAGGCCACAGAGAAGG+TGG 0.588668 7.4:-14943301 None:intergenic
CTATAGAAGAAGCAGAGAAG+AGG 0.590382 7.4:-14942593 None:intergenic
TAGCACCTCTTATTGCAAGA+TGG 0.591411 7.4:-14944036 None:intergenic
CTATGTGTAGATCTTGATTG+TGG 0.591963 7.4:+14943410 MS.gene055942:CDS
TCCTAAACCATTCTCAAGAG+AGG 0.592651 7.4:-14944212 None:intergenic
CTATAACATCAAGATTCCTA+AGG 0.593541 7.4:-14943316 None:intergenic
GAAGAACAGCGATACAGCCT+CGG 0.604012 7.4:-14942963 None:intergenic
GGAGATGTACCGATTGTAGG+AGG 0.609545 7.4:+14943650 MS.gene055942:CDS
ACGAACCGTGTTGTCTCGGG+TGG 0.628593 7.4:-14943725 None:intergenic
ATTACTACTACAACTAAACG+CGG 0.642820 7.4:+14943152 MS.gene055942:CDS
CACAACCACCCGAGACAACA+CGG 0.644768 7.4:+14943720 MS.gene055942:CDS
GATCCAATTATAACTTCCAG+GGG 0.646433 7.4:-14943254 None:intergenic
GATGCAGGAAGTTTCCTCCA+AGG 0.648953 7.4:+14943087 MS.gene055942:intron
GCCTCCTTTCTTGGTCACCG+AGG 0.653577 7.4:+14942946 MS.gene055942:CDS
GGTTGGAAAGATGTATGAAG+TGG 0.655471 7.4:+14943850 MS.gene055942:CDS
AGTTTGTAAAGAGTATGAAG+AGG 0.658887 7.4:-14943192 None:intergenic
TAATCATCATAGGAAGACAA+AGG 0.675878 7.4:-14942506 None:intergenic
GAAGCTAGAAGAGTTGACAA+TGG 0.676230 7.4:+14942361 MS.gene055942:CDS
ATGTATTGCCACCTTCTCTG+TGG 0.676460 7.4:+14943293 MS.gene055942:CDS
GCCTCGGTGACCAAGAAAGG+AGG 0.681075 7.4:-14942947 None:intergenic
ATTTGTATCGATAAAATCCG+CGG 0.690641 7.4:-14943886 None:intergenic
TGAGATGAATGAGAATGATG+AGG 0.693524 7.4:+14943787 MS.gene055942:CDS
TGTTGTTGGTGAGCAAACAG+TGG 0.703428 7.4:+14943811 MS.gene055942:CDS
GTGGTTGTTACTACTTACCG+CGG 0.726364 7.4:+14943869 MS.gene055942:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CAATTTTGTTTATAAATTAT+AGG - chr7.4:14942788-14942807 None:intergenic 10.0%
!!! AATGCAATTTCATTAATTTT+AGG + chr7.4:14942746-14942765 MS.gene055942:intron 15.0%
!! ACTTAATGATAATTATCCTA+AGG + chr7.4:14944275-14944294 MS.gene055942:CDS 20.0%
!! TCAATGATTTAGATCAAAAA+GGG - chr7.4:14942705-14942724 None:intergenic 20.0%
!!! AAATTGCATTTTTAATGCAA+AGG - chr7.4:14942736-14942755 None:intergenic 20.0%
!!! GATTAAAGCATTTAGTTTTT+TGG + chr7.4:14943370-14943389 MS.gene055942:CDS 20.0%
!!! TCAAAAACTTAAGTTTTATG+CGG + chr7.4:14943628-14943647 MS.gene055942:CDS 20.0%
!!! TTTCAATTAGTTCTTTTTCT+AGG + chr7.4:14942639-14942658 MS.gene055942:intron 20.0%
!!! TTTGTTATAGGAGAATTTAT+TGG + chr7.4:14942663-14942682 MS.gene055942:intron 20.0%
! AAATGCTTTAATCAAACCTA+TGG - chr7.4:14943363-14943382 None:intergenic 25.0%
! ACGTAAGAACTTTCAAAATT+TGG - chr7.4:14943032-14943051 None:intergenic 25.0%
! AGTCTAATAACTTGAAAGAA+TGG + chr7.4:14944164-14944183 MS.gene055942:CDS 25.0%
! AGTTATAATTGGATCTAATG+TGG + chr7.4:14943262-14943281 MS.gene055942:CDS 25.0%
! GTCAATGATTTAGATCAAAA+AGG - chr7.4:14942706-14942725 None:intergenic 25.0%
! GTCTAATAACTTGAAAGAAT+GGG + chr7.4:14944165-14944184 MS.gene055942:CDS 25.0%
! TCATGATTCCTTATAATCTT+TGG - chr7.4:14944370-14944389 None:intergenic 25.0%
! TTGAAATGAAGAGTTAAAAG+TGG - chr7.4:14942625-14942644 None:intergenic 25.0%
!! GGATTTTATCGATACAAATT+GGG + chr7.4:14943890-14943909 MS.gene055942:CDS 25.0%
!!! AGAATAAGATTAGTTTGTGA+AGG + chr7.4:14943518-14943537 MS.gene055942:CDS 25.0%
!!! CAAAAACTTAAGTTTTATGC+GGG + chr7.4:14943629-14943648 MS.gene055942:CDS 25.0%
!!! TGCTTTTATTAGAGTATCAA+TGG + chr7.4:14944414-14944433 MS.gene055942:CDS 25.0%
AAAGGCTTGAATCAAAGTAA+GGG - chr7.4:14942918-14942937 None:intergenic 30.0%
AAAGTCAACGTAATCATCAT+AGG - chr7.4:14942519-14942538 None:intergenic 30.0%
AAATGGAAGAAACTCAAAGT+AGG - chr7.4:14943768-14943787 None:intergenic 30.0%
AAGTCATGAAATTTCAGATG+AGG + chr7.4:14943439-14943458 MS.gene055942:CDS 30.0%
AATTTCCATCTTGCAATAAG+AGG + chr7.4:14944031-14944050 MS.gene055942:CDS 30.0%
AGAGAGAAAAAGGTCATATA+AGG + chr7.4:14944251-14944270 MS.gene055942:CDS 30.0%
AGATCCAATTATAACTTCCA+GGG - chr7.4:14943258-14943277 None:intergenic 30.0%
AGGAATCTTGATGTTATAGA+TGG + chr7.4:14943320-14943339 MS.gene055942:CDS 30.0%
AGTTTGTGAAGGTAAGAATT+GGG + chr7.4:14943529-14943548 MS.gene055942:CDS 30.0%
ATAAATACCTTCAACTGCTT+TGG - chr7.4:14944121-14944140 None:intergenic 30.0%
ATAAGCCACCAAAGATTATA+AGG + chr7.4:14944359-14944378 MS.gene055942:CDS 30.0%
ATACTCTTTACAAACTGGTA+AGG + chr7.4:14943199-14943218 MS.gene055942:CDS 30.0%
ATAGATTGTTTCCGAATGTT+CGG + chr7.4:14943564-14943583 MS.gene055942:CDS 30.0%
ATGATAATTATCCTAAGGCA+AGG + chr7.4:14944280-14944299 MS.gene055942:CDS 30.0%
ATTACTACTACAACTAAACG+CGG + chr7.4:14943152-14943171 MS.gene055942:CDS 30.0%
CTATAACATCAAGATTCCTA+AGG - chr7.4:14943319-14943338 None:intergenic 30.0%
CTATTTGACAATTCATGTTG+AGG - chr7.4:14943500-14943519 None:intergenic 30.0%
CTCATAACAAATTCAACTTG+AGG - chr7.4:14943953-14943972 None:intergenic 30.0%
TAATCATCATAGGAAGACAA+AGG - chr7.4:14942509-14942528 None:intergenic 30.0%
TAGATCCAATTATAACTTCC+AGG - chr7.4:14943259-14943278 None:intergenic 30.0%
TCATTCTCATTCATCTCAAA+TGG - chr7.4:14943785-14943804 None:intergenic 30.0%
TCTTCATACTCTTTACAAAC+TGG + chr7.4:14943194-14943213 MS.gene055942:CDS 30.0%
TGATTCCTTATAATCTTTGG+TGG - chr7.4:14944367-14944386 None:intergenic 30.0%
TTAATCAAACCTATGGCATA+AGG - chr7.4:14943356-14943375 None:intergenic 30.0%
TTTCGATCAGTTATCAGATT+TGG + chr7.4:14944306-14944325 MS.gene055942:CDS 30.0%
! AGTTTGTAAAGAGTATGAAG+AGG - chr7.4:14943195-14943214 None:intergenic 30.0%
! ATTTGTATCGATAAAATCCG+CGG - chr7.4:14943889-14943908 None:intergenic 30.0%
! CGGATTTTATCGATACAAAT+TGG + chr7.4:14943889-14943908 MS.gene055942:CDS 30.0%
! TAGTTTGTGAAGGTAAGAAT+TGG + chr7.4:14943528-14943547 MS.gene055942:CDS 30.0%
! TCATCTGAAATTTCATGACT+TGG - chr7.4:14943440-14943459 None:intergenic 30.0%
! TTTTTAATGCAAAGGTGATG+AGG - chr7.4:14942728-14942747 None:intergenic 30.0%
!! GAAGGTATTTATAGAAGTAG+AGG + chr7.4:14944129-14944148 MS.gene055942:CDS 30.0%
!!! CTTTTTCTAGGCTTTGTTAT+AGG + chr7.4:14942651-14942670 MS.gene055942:intron 30.0%
!!! TAGTTTTTTGGAGTCCAAAT+GGG + chr7.4:14943382-14943401 MS.gene055942:CDS 30.0%
!!! TCAGATTTGGCTTTTAAGAA+TGG + chr7.4:14944319-14944338 MS.gene055942:CDS 30.0%
!!! TTAGTTTTTTGGAGTCCAAA+TGG + chr7.4:14943381-14943400 MS.gene055942:CDS 30.0%
AACTCAAAGTAGGCAAAAGT+AGG - chr7.4:14943758-14943777 None:intergenic 35.0%
AAGTAATCTCCTCCTACAAT+CGG - chr7.4:14943662-14943681 None:intergenic 35.0%
ATTAGTACTCCTTATGCCAT+AGG + chr7.4:14943344-14943363 MS.gene055942:CDS 35.0%
CAAATGTAAACAAGACCCTA+TGG + chr7.4:14943111-14943130 MS.gene055942:CDS 35.0%
CACTTGATAAACCGAACATT+CGG - chr7.4:14943578-14943597 None:intergenic 35.0%
CGATCAATCGTTCAACATAA+TGG + chr7.4:14942413-14942432 MS.gene055942:CDS 35.0%
CTATGTGTAGATCTTGATTG+TGG + chr7.4:14943410-14943429 MS.gene055942:CDS 35.0%
GAAAGGCTTGAATCAAAGTA+AGG - chr7.4:14942919-14942938 None:intergenic 35.0%
GAAGCTGTAATCAACACTAT+TGG + chr7.4:14943470-14943489 MS.gene055942:CDS 35.0%
GATCCAATTATAACTTCCAG+GGG - chr7.4:14943257-14943276 None:intergenic 35.0%
GTTTGTGAAGGTAAGAATTG+GGG + chr7.4:14943530-14943549 MS.gene055942:CDS 35.0%
TCATGAAGTTGTCAAGTTCT+TGG + chr7.4:14944384-14944403 MS.gene055942:CDS 35.0%
TGAGATGAATGAGAATGATG+AGG + chr7.4:14943787-14943806 MS.gene055942:CDS 35.0%
TGTATTTCCTCTCTTGAGAA+TGG + chr7.4:14944205-14944224 MS.gene055942:CDS 35.0%
TGTTGAGTTTGCAAGTTTCT+TGG + chr7.4:14944081-14944100 MS.gene055942:CDS 35.0%
TTACTCTGATGTGATTGTGA+TGG + chr7.4:14942813-14942832 MS.gene055942:intron 35.0%
TTTATCAAGTGCGTTACAAC+AGG + chr7.4:14943587-14943606 MS.gene055942:CDS 35.0%
! TCAAAGTAAGGGATCAGTTT+TGG - chr7.4:14942907-14942926 None:intergenic 35.0%
!! CATAGGGTCTTGTTTACATT+TGG - chr7.4:14943113-14943132 None:intergenic 35.0%
ACAAGACTTGTGAAAGTAGC+AGG - chr7.4:14942485-14942504 None:intergenic 40.0%
AGAAGTAGAGGAAGTTCAAG+AGG + chr7.4:14944141-14944160 MS.gene055942:CDS 40.0%
AGAATCTCAGCTGAAGACTT+AGG - chr7.4:14943980-14943999 None:intergenic 40.0%
AGTCCCCTGGAAGTTATAAT+TGG + chr7.4:14943251-14943270 MS.gene055942:CDS 40.0%
CAACTTGAGGTGATGAATTG+TGG - chr7.4:14943940-14943959 None:intergenic 40.0%
CTATAGAAGAAGCAGAGAAG+AGG - chr7.4:14942596-14942615 None:intergenic 40.0%
CTCTTCTCTGCTTCTTCTAT+AGG + chr7.4:14942594-14942613 MS.gene055942:CDS 40.0%
GAAGCTAGAAGAGTTGACAA+TGG + chr7.4:14942361-14942380 MS.gene055942:CDS 40.0%
GAGAATGATGAGGATGTTGT+TGG + chr7.4:14943797-14943816 MS.gene055942:CDS 40.0%
GCTGTAATCAACACTATTGG+TGG + chr7.4:14943473-14943492 MS.gene055942:CDS 40.0%
GGATGCAAAACATCATCAGT+TGG + chr7.4:14942382-14942401 MS.gene055942:CDS 40.0%
GGCGATATAGTTAGAGTTGT+TGG + chr7.4:14943911-14943930 MS.gene055942:CDS 40.0%
GGTTGGAAAGATGTATGAAG+TGG + chr7.4:14943850-14943869 MS.gene055942:CDS 40.0%
GTCAGCATAGAGAAACCATA+GGG - chr7.4:14943129-14943148 None:intergenic 40.0%
GTTTGCAAGTTTCTTGGATC+AGG + chr7.4:14944087-14944106 MS.gene055942:CDS 40.0%
TAAACGCGGCTTAAAGGTTA+TGG + chr7.4:14943166-14943185 MS.gene055942:CDS 40.0%
TACAACTAAACGCGGCTTAA+AGG + chr7.4:14943160-14943179 MS.gene055942:CDS 40.0%
TACAAGGTGCAGAGAGAAAA+AGG + chr7.4:14944241-14944260 MS.gene055942:CDS 40.0%
TAGCACCTCTTATTGCAAGA+TGG - chr7.4:14944039-14944058 None:intergenic 40.0%
TCCTAAACCATTCTCAAGAG+AGG - chr7.4:14944215-14944234 None:intergenic 40.0%
TCCTCTCTTGAGAATGGTTT+AGG + chr7.4:14944211-14944230 MS.gene055942:CDS 40.0%
TGTCAGCATAGAGAAACCAT+AGG - chr7.4:14943130-14943149 None:intergenic 40.0%
! TTTGCTTCTGAGTGTTGTGT+AGG + chr7.4:14943680-14943699 MS.gene055942:CDS 40.0%
!! GTCTTGTTTACATTTGGCCT+TGG - chr7.4:14943107-14943126 None:intergenic 40.0%
!! TCTTGCAATAAGAGGTGCTA+CGG + chr7.4:14944039-14944058 MS.gene055942:CDS 40.0%
!! TGGTTTAGGAGCATTGTACA+AGG + chr7.4:14944225-14944244 MS.gene055942:CDS 40.0%
!! TTGTTTACATTTGGCCTTGG+AGG - chr7.4:14943104-14943123 None:intergenic 40.0%
!!! AGGGATCAGTTTTGGTTTCA+TGG - chr7.4:14942899-14942918 None:intergenic 40.0%
!!! GATCAGTTTTGGTTTCATGG+AGG - chr7.4:14942896-14942915 None:intergenic 40.0%
ACCTTCAACTGCTTTGGCAT+CGG - chr7.4:14944115-14944134 None:intergenic 45.0%
ATGTATTGCCACCTTCTCTG+TGG + chr7.4:14943293-14943312 MS.gene055942:CDS 45.0%
GACTTTGTCTTTCTCAGCTC+AGG + chr7.4:14942865-14942884 MS.gene055942:intron 45.0%
GAGAACGTTGCAAGTTGTTG+AGG - chr7.4:14943230-14943249 None:intergenic 45.0%
GAGCAAACAGTGGATCTTTG+CGG + chr7.4:14943821-14943840 MS.gene055942:CDS 45.0%
GCTGTATCGCTGTTCTTCAA+AGG + chr7.4:14942968-14942987 MS.gene055942:CDS 45.0%
GTGGTTGTTACTACTTACCG+CGG + chr7.4:14943869-14943888 MS.gene055942:CDS 45.0%
TACACATAGCTGCTCCCATT+TGG - chr7.4:14943399-14943418 None:intergenic 45.0%
TAGTACGAACCGTGTTGTCT+CGG - chr7.4:14943732-14943751 None:intergenic 45.0%
TCAAAAGCTGCCTCCTTTCT+TGG + chr7.4:14942937-14942956 MS.gene055942:CDS 45.0%
TGTGAAGGTAAGAATTGGGG+TGG + chr7.4:14943533-14943552 MS.gene055942:CDS 45.0%
TTTATCCACCAGATGGCTGA+TGG + chr7.4:14942536-14942555 MS.gene055942:CDS 45.0%
! ATCTGAAACCTCCATGATGC+AGG + chr7.4:14943072-14943091 MS.gene055942:intron 45.0%
! GAAAGGAGGCAGCTTTTGAA+AGG - chr7.4:14942936-14942955 None:intergenic 45.0%
! GGTGGCTTATATTGACTAGC+TGG - chr7.4:14944349-14944368 None:intergenic 45.0%
! TGTTGTTGGTGAGCAAACAG+TGG + chr7.4:14943811-14943830 MS.gene055942:CDS 45.0%
!! CGTTGACTTTATCCACCAGA+TGG + chr7.4:14942529-14942548 MS.gene055942:CDS 45.0%
!! CTTGCAATAAGAGGTGCTAC+GGG + chr7.4:14944040-14944059 MS.gene055942:CDS 45.0%
ACCGATGCCAAAGCAGTTGA+AGG + chr7.4:14944111-14944130 MS.gene055942:CDS 50.0%
AGTACGAACCGTGTTGTCTC+GGG - chr7.4:14943731-14943750 None:intergenic 50.0%
CATGTTCTCCATCAGCCATC+TGG - chr7.4:14942547-14942566 None:intergenic 50.0%
GAAGAACAGCGATACAGCCT+CGG - chr7.4:14942966-14942985 None:intergenic 50.0%
GATCGAAAGCTCCTTGCCTT+AGG - chr7.4:14944294-14944313 None:intergenic 50.0%
GATGCAGGAAGTTTCCTCCA+AGG + chr7.4:14943087-14943106 MS.gene055942:intron 50.0%
GATTCCTAAGGCCACAGAGA+AGG - chr7.4:14943307-14943326 None:intergenic 50.0%
GGAAACTTCCTGCATCATGG+AGG - chr7.4:14943083-14943102 None:intergenic 50.0%
GGAGGAAACTTCCTGCATCA+TGG - chr7.4:14943086-14943105 None:intergenic 50.0%
!! GGAGATGTACCGATTGTAGG+AGG + chr7.4:14943650-14943669 MS.gene055942:CDS 50.0%
ACAGCCTCGGTGACCAAGAA+AGG - chr7.4:14942953-14942972 None:intergenic 55.0%
AGTGGATCTTTGCGGCGTTG+AGG + chr7.4:14943829-14943848 MS.gene055942:CDS 55.0%
CACAACCACCCGAGACAACA+CGG + chr7.4:14943720-14943739 MS.gene055942:CDS 55.0%
GTTCTCCATCAGCCATCTGG+TGG - chr7.4:14942544-14942563 None:intergenic 55.0%
TCCTAAGGCCACAGAGAAGG+TGG - chr7.4:14943304-14943323 None:intergenic 55.0%
TGCAACGTTCTCTAGTCCCC+TGG + chr7.4:14943238-14943257 MS.gene055942:CDS 55.0%
! GATCTTTGCGGCGTTGAGGT+TGG + chr7.4:14943833-14943852 MS.gene055942:CDS 55.0%
!! GCGGGAGATGTACCGATTGT+AGG + chr7.4:14943647-14943666 MS.gene055942:CDS 55.0%
ACGAACCGTGTTGTCTCGGG+TGG - chr7.4:14943728-14943747 None:intergenic 60.0%
GCCACCTTCTCTGTGGCCTT+AGG + chr7.4:14943300-14943319 MS.gene055942:CDS 60.0%
GCCTCCTTTCTTGGTCACCG+AGG + chr7.4:14942946-14942965 MS.gene055942:CDS 60.0%
GCCTCGGTGACCAAGAAAGG+AGG - chr7.4:14942950-14942969 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr7.4 gene 14942338 14944444 14942338 ID=MS.gene055942
chr7.4 mRNA 14942338 14944444 14942338 ID=MS.gene055942.t1;Parent=MS.gene055942
chr7.4 exon 14942338 14942615 14942338 ID=MS.gene055942.t1.exon1;Parent=MS.gene055942.t1
chr7.4 CDS 14942338 14942615 14942338 ID=cds.MS.gene055942.t1;Parent=MS.gene055942.t1
chr7.4 exon 14942882 14942989 14942882 ID=MS.gene055942.t1.exon2;Parent=MS.gene055942.t1
chr7.4 CDS 14942882 14942989 14942882 ID=cds.MS.gene055942.t1;Parent=MS.gene055942.t1
chr7.4 exon 14943094 14944444 14943094 ID=MS.gene055942.t1.exon3;Parent=MS.gene055942.t1
chr7.4 CDS 14943094 14944444 14943094 ID=cds.MS.gene055942.t1;Parent=MS.gene055942.t1
Gene Sequence

>MS.gene055942

ATGACAGATGATGAACTTATACAGAAGCTAGAAGAGTTGACAATGGATGCAAAACATCATCAGTTGGAAACTCTTCGATCAATCGTTCAACATAATGGTTCTGTTAGATATCTTCAATCTTTCAATAATAACAAAAGTGTTGATCCTGCTACTTTCACAAGTCTTGTTCCTTTGTCTTCCTATGATGATTACGTTGACTTTATCCACCAGATGGCTGATGGAGAACATGATCATCTTGATCTTCTCTCTGTTGATCCTCTTCTCTGCTTCTTCTATAGGTGAGTCCACTTTTAACTCTTCATTTCAATTAGTTCTTTTTCTAGGCTTTGTTATAGGAGAATTTATTGGAATAAATCATAAGACACCCTTTTTGATCTAAATCATTGACCTCATCACCTTTGCATTAAAAATGCAATTTCATTAATTTTAGGATCAAATCATTCATTGCCTATAATTTATAAACAAAATTGATGATTTACTCTGATGTGATTGTGATGGATGACTTATGTTGTGCATAACACAATTGTGACTTTGTCTTTCTCAGCTCAGGAACAACCTCCATGAAACCAAAACTGATCCCTTACTTTGATTCAAGCCTTTCAAAAGCTGCCTCCTTTCTTGGTCACCGAGGCTGTATCGCTGTTCTTCAAAGGTAAACTTAAGTGATCAATATAATTTTTAAAAAATTTTGCCAAATTTTGAAAGTTCTTACGTTCATTTAACAATGAGTAAAAATCTGAAACCTCCATGATGCAGGAAGTTTCCTCCAAGGCCAAATGTAAACAAGACCCTATGGTTTCTCTATGCTGACAAAATTACTACTACAACTAAACGCGGCTTAAAGGTTATGGCAGCCTCTTCATACTCTTTACAAACTGGTAAGGTAACTCCTCAACAACTTGCAACGTTCTCTAGTCCCCTGGAAGTTATAATTGGATCTAATGTGGAACAACAAATGTATTGCCACCTTCTCTGTGGCCTTAGGAATCTTGATGTTATAGATGGAATTAGTACTCCTTATGCCATAGGTTTGATTAAAGCATTTAGTTTTTTGGAGTCCAAATGGGAGCAGCTATGTGTAGATCTTGATTGTGGATTTCCAAGTCATGAAATTTCAGATGAGGAAATGAGAGAAGCTGTAATCAACACTATTGGTGGTCCTCAACATGAATTGTCAAATAGAATAAGATTAGTTTGTGAAGGTAAGAATTGGGGTGGAATTGTACATAGATTGTTTCCGAATGTTCGGTTTATCAAGTGCGTTACAACAGGAAGCATGAAGCAGTACTATCAAAAACTTAAGTTTTATGCGGGAGATGTACCGATTGTAGGAGGAGATTACTTTGCTTCTGAGTGTTGTGTAGGTTTAAATTTAGACATAACACAACCACCCGAGACAACACGGTTCGTACTACTTCCTACTTTTGCCTACTTTGAGTTTCTTCCATTTGAGATGAATGAGAATGATGAGGATGTTGTTGGTGAGCAAACAGTGGATCTTTGCGGCGTTGAGGTTGGAAAGATGTATGAAGTGGTTGTTACTACTTACCGCGGATTTTATCGATACAAATTGGGCGATATAGTTAGAGTTGTTGGTTTCCACAATTCATCACCTCAAGTTGAATTTGTTATGAGAGCACCTAAGTCTTCAGCTGAGATTCTCAATGAGAAAGACTTGATTTCAGCAGTTGAAAATTTCCATCTTGCAATAAGAGGTGCTACGGGAATCAATTCAATTGAGATTGTTGAGTTTGCAAGTTTCTTGGATCAGGAACCGATGCCAAAGCAGTTGAAGGTATTTATAGAAGTAGAGGAAGTTCAAGAGGAGTCTAATAACTTGAAAGAATGGGTTAAAGTGTTTAAAAGTTGTATTTCCTCTCTTGAGAATGGTTTAGGAGCATTGTACAAGGTGCAGAGAGAAAAAGGTCATATAAGGAACTTAATGATAATTATCCTAAGGCAAGGAGCTTTCGATCAGTTATCAGATTTGGCTTTTAAGAATGGAACACCAGCTAGTCAATATAAGCCACCAAAGATTATAAGGAATCATGAAGTTGTCAAGTTCTTGGAAAAGTTTGCTTTTATTAGAGTATCAATGGATGACTAA

Protein sequence

>MS.gene055942.t1

MTDDELIQKLEELTMDAKHHQLETLRSIVQHNGSVRYLQSFNNNKSVDPATFTSLVPLSSYDDYVDFIHQMADGEHDHLDLLSVDPLLCFFYSSGTTSMKPKLIPYFDSSLSKAASFLGHRGCIAVLQRKFPPRPNVNKTLWFLYADKITTTTKRGLKVMAASSYSLQTGKVTPQQLATFSSPLEVIIGSNVEQQMYCHLLCGLRNLDVIDGISTPYAIGLIKAFSFLESKWEQLCVDLDCGFPSHEISDEEMREAVINTIGGPQHELSNRIRLVCEGKNWGGIVHRLFPNVRFIKCVTTGSMKQYYQKLKFYAGDVPIVGGDYFASECCVGLNLDITQPPETTRFVLLPTFAYFEFLPFEMNENDEDVVGEQTVDLCGVEVGKMYEVVVTTYRGFYRYKLGDIVRVVGFHNSSPQVEFVMRAPKSSAEILNEKDLISAVENFHLAIRGATGINSIEIVEFASFLDQEPMPKQLKVFIEVEEVQEESNNLKEWVKVFKSCISSLENGLGALYKVQREKGHIRNLMIIILRQGAFDQLSDLAFKNGTPASQYKPPKIIRNHEVVKFLEKFAFIRVSMDD