Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76731.t1 | XP_013455181.1 | 90.7 | 215 | 20 | 0 | 1 | 215 | 1 | 215 | 1.10E-109 | 406 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76731.t1 | P07602 | 35.0 | 100 | 59 | 3 | 14 | 109 | 43 | 140 | 4.2e-09 | 63.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76731.t1 | A0A072UHH9 | 90.7 | 215 | 20 | 0 | 1 | 215 | 1 | 215 | 7.9e-110 | 406.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene76731 | MS.gene002990 | PPI |
| MS.gene76731 | MS.gene012660 | PPI |
| MS.gene02356 | MS.gene76731 | PPI |
| MS.gene76731 | MS.gene042166 | PPI |
| MS.gene76731 | MS.gene68947 | PPI |
| MS.gene76731 | MS.gene68850 | PPI |
| MS.gene76731 | MS.gene27206 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76731.t1 | MTR_4g029040 | 90.698 | 215 | 20 | 0 | 1 | 215 | 1 | 215 | 8.32e-146 | 405 |
| MS.gene76731.t1 | MTR_7g072560 | 49.107 | 224 | 102 | 2 | 1 | 212 | 1 | 224 | 1.47e-78 | 236 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76731.t1 | AT3G51730 | 43.719 | 199 | 107 | 2 | 1 | 194 | 1 | 199 | 7.79e-57 | 179 |
| MS.gene76731.t1 | AT5G01800 | 38.624 | 189 | 104 | 3 | 16 | 195 | 15 | 200 | 2.17e-51 | 166 |
Find 40 sgRNAs with CRISPR-Local
Find 192 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGATACCGTTGCGGAATTAT+TGG | 0.223574 | 4.1:+70888990 | MS.gene76731:CDS |
| GAGATTATGGAAAGCAAAAT+AGG | 0.235192 | 4.1:+70887058 | None:intergenic |
| CTTCCATGATTGCAGCTTCC+TGG | 0.235209 | 4.1:-70890145 | None:intergenic |
| ACTAAAGGCATGCAATAATA+TGG | 0.295458 | 4.1:+70889212 | MS.gene76731:CDS |
| TGCATATATCTGCTGTCTTC+AGG | 0.324490 | 4.1:-70890085 | None:intergenic |
| AAATCACTAACCTTAGTTTC+AGG | 0.327947 | 4.1:-70889027 | None:intergenic |
| GTTGAATGATCCTGAAACTA+AGG | 0.370785 | 4.1:+70889017 | MS.gene76731:CDS |
| TCACAAATTGAACACGCATT+TGG | 0.400191 | 4.1:-70888365 | None:intergenic |
| AAGATTTCTTCACAGGTTCA+TGG | 0.418003 | 4.1:+70888946 | MS.gene76731:CDS |
| TTCTTCCACTATTGTTAGCC+AGG | 0.431054 | 4.1:+70890127 | MS.gene76731:CDS |
| CATTGTACAGTGCTTTGAAT+TGG | 0.437748 | 4.1:+70888834 | MS.gene76731:intron |
| GTCTGCAAAGATTTCTTCAC+AGG | 0.444344 | 4.1:+70888939 | MS.gene76731:CDS |
| AGATTATGGAAAGCAAAATA+GGG | 0.475417 | 4.1:+70887059 | None:intergenic |
| TGTACAGTGCTTTGAATTGG+TGG | 0.491267 | 4.1:+70888837 | MS.gene76731:intron |
| AAAATAGCTCTAATGAAGCC+TGG | 0.494193 | 4.1:+70888886 | MS.gene76731:CDS |
| AACAATAGTGGAAGAAGGGC+AGG | 0.499361 | 4.1:-70890120 | None:intergenic |
| TAGCCAGGAAGCTGCAATCA+TGG | 0.501752 | 4.1:+70890142 | MS.gene76731:CDS |
| AGCTTCCTGGCTAACAATAG+TGG | 0.513011 | 4.1:-70890132 | None:intergenic |
| TCTGCATTGACTAGAATCAA+TGG | 0.518668 | 4.1:-70890056 | None:intergenic |
| TCTTCCGTCTTTCAACGAGC+AGG | 0.520321 | 4.1:+70888475 | MS.gene76731:CDS |
| TGAGATACTTGATTATCTAA+AGG | 0.525760 | 4.1:+70888400 | MS.gene76731:CDS |
| TTGTTTATTTACAGTGCAAG+AGG | 0.527287 | 4.1:+70890015 | MS.gene76731:intron |
| TGGCTAACAATAGTGGAAGA+AGG | 0.530354 | 4.1:-70890125 | None:intergenic |
| TAATATGGAGAAGTATAAGA+AGG | 0.539882 | 4.1:+70889227 | MS.gene76731:CDS |
| GATAATTCAGAAACTACTAA+AGG | 0.545272 | 4.1:+70889197 | MS.gene76731:CDS |
| GGCTAACAATAGTGGAAGAA+GGG | 0.565538 | 4.1:-70890124 | None:intergenic |
| CAGGTTCATGGAAATAGTTG+TGG | 0.583323 | 4.1:+70888958 | MS.gene76731:CDS |
| TCTTTGCAGACTCGCAAAGG+TGG | 0.584711 | 4.1:-70888927 | None:intergenic |
| GCAAGAGAGTTTGCAAACCC+TGG | 0.584783 | 4.1:+70887124 | MS.gene76731:CDS |
| AAATCTTTGCAGACTCGCAA+AGG | 0.587749 | 4.1:-70888930 | None:intergenic |
| TTATTTACAGTGCAAGAGGA+TGG | 0.587964 | 4.1:+70890019 | MS.gene76731:intron |
| TCTAAAGGATAACAAGACTC+AGG | 0.588548 | 4.1:+70888415 | MS.gene76731:CDS |
| TATGGAGAAGTATAAGAAGG+AGG | 0.591525 | 4.1:+70889230 | MS.gene76731:CDS |
| GAAAGACGGAAGATGACGGC+AGG | 0.600239 | 4.1:-70888465 | None:intergenic |
| CGTTGAAAGACGGAAGATGA+CGG | 0.615812 | 4.1:-70888469 | None:intergenic |
| CAAACCTGCTCGTTGAAAGA+CGG | 0.623702 | 4.1:-70888479 | None:intergenic |
| AAATGCGTGTTCAATTTGTG+AGG | 0.646128 | 4.1:+70888367 | MS.gene76731:CDS |
| CTCAACCAATAATTCCGCAA+CGG | 0.648292 | 4.1:-70888995 | None:intergenic |
| GATTAAGAGTCAGAAAACAA+TGG | 0.672126 | 4.1:-70890173 | None:intergenic |
| GATGACGGCAGGTATTGTGA+AGG | 0.680867 | 4.1:-70888454 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATGACATTTAATAATAAA+AGG | - | chr4.1:70889306-70889325 | None:intergenic | 10.0% |
| !! | AAAAAAAAAGAGAAAACAAA+AGG | - | chr4.1:70889274-70889293 | None:intergenic | 15.0% |
| !! | AAACATGAATGAATTTATTA+TGG | - | chr4.1:70889969-70889988 | None:intergenic | 15.0% |
| !! | ACTATATAAAAAATTAACCA+TGG | - | chr4.1:70888132-70888151 | None:intergenic | 15.0% |
| !! | ATAAACAAGAAAATAATTGT+TGG | + | chr4.1:70887285-70887304 | MS.gene76731:intron | 15.0% |
| !!! | GGTTAATTTTTTATATAGTT+CGG | + | chr4.1:70888133-70888152 | MS.gene76731:intron | 15.0% |
| !! | AAAATAACTACTTTCTGAAT+TGG | + | chr4.1:70889109-70889128 | MS.gene76731:intron | 20.0% |
| !! | AAAATATGCAACAAATAAAC+CGG | - | chr4.1:70889833-70889852 | None:intergenic | 20.0% |
| !! | AAATGTACATGTGATATTAT+AGG | - | chr4.1:70888240-70888259 | None:intergenic | 20.0% |
| !! | AACAAGATCAGTTAAAAATA+AGG | - | chr4.1:70888800-70888819 | None:intergenic | 20.0% |
| !! | AATTTGGACTAATTAAATCA+AGG | - | chr4.1:70887747-70887766 | None:intergenic | 20.0% |
| !! | ATATATGTAACTGCAAAAAT+TGG | - | chr4.1:70889922-70889941 | None:intergenic | 20.0% |
| !! | ATTTATGTAATCTTAGAAGA+TGG | + | chr4.1:70887220-70887239 | MS.gene76731:intron | 20.0% |
| !! | TAATTAGTCCAAATTAAACT+CGG | + | chr4.1:70887752-70887771 | MS.gene76731:intron | 20.0% |
| !! | TATAAATTCGTTAAATTTGC+TGG | - | chr4.1:70888743-70888762 | None:intergenic | 20.0% |
| !! | TGTAAAGTACAAAGATTAAT+AGG | + | chr4.1:70887243-70887262 | MS.gene76731:intron | 20.0% |
| !!! | AATTTTTGCAGTTACATATA+TGG | + | chr4.1:70889921-70889940 | MS.gene76731:intron | 20.0% |
| !!! | ACATTTTTTTAAAGGAAAAC+CGG | - | chr4.1:70887995-70888014 | None:intergenic | 20.0% |
| !!! | ACTTAATTTTATGTAACCAA+AGG | - | chr4.1:70889339-70889358 | None:intergenic | 20.0% |
| !!! | AGGTTTATCTTATTTTTCTT+TGG | - | chr4.1:70887866-70887885 | None:intergenic | 20.0% |
| !!! | ATATAAAACAATTACTGACT+AGG | - | chr4.1:70889417-70889436 | None:intergenic | 20.0% |
| !!! | ATTCATTACAATGATTTTTC+TGG | + | chr4.1:70889375-70889394 | MS.gene76731:intron | 20.0% |
| !!! | ATTGAGCTTTGAATTTTAAT+CGG | + | chr4.1:70888657-70888676 | MS.gene76731:intron | 20.0% |
| !!! | ATTTTCTTGTTTATCATTGA+TGG | - | chr4.1:70887279-70887298 | None:intergenic | 20.0% |
| !!! | CTTTTATTTCTGATTTTGTT+GGG | + | chr4.1:70887082-70887101 | MS.gene76731:CDS | 20.0% |
| !!! | TAATTAAATCAAGGTTCTAA+GGG | - | chr4.1:70887738-70887757 | None:intergenic | 20.0% |
| ! | AAATAAACTTCAAACCATCT+AGG | - | chr4.1:70887200-70887219 | None:intergenic | 25.0% |
| ! | ACCTTACTAATGAATGAAAA+TGG | - | chr4.1:70887822-70887841 | None:intergenic | 25.0% |
| ! | ATATCAATCCGAGTTTAATT+TGG | - | chr4.1:70887763-70887782 | None:intergenic | 25.0% |
| ! | CTAATTAAATCAAGGTTCTA+AGG | - | chr4.1:70887739-70887758 | None:intergenic | 25.0% |
| ! | GATAATTCAGAAACTACTAA+AGG | + | chr4.1:70889197-70889216 | MS.gene76731:CDS | 25.0% |
| ! | TAACATAAGAAGTTGAGTTA+GGG | + | chr4.1:70887450-70887469 | MS.gene76731:intron | 25.0% |
| ! | TAATTCTGCATATGAAAGAT+AGG | - | chr4.1:70888336-70888355 | None:intergenic | 25.0% |
| ! | TATTAAGGAAGGATAATGTA+CGG | - | chr4.1:70889058-70889077 | None:intergenic | 25.0% |
| ! | TGAGATACTTGATTATCTAA+AGG | + | chr4.1:70888400-70888419 | MS.gene76731:CDS | 25.0% |
| ! | TTAACATAAGAAGTTGAGTT+AGG | + | chr4.1:70887449-70887468 | MS.gene76731:intron | 25.0% |
| ! | TTAGATAGAATGAGTTTGAA+TGG | - | chr4.1:70887532-70887551 | None:intergenic | 25.0% |
| ! | TTGGTCAATGTTATAAAAAG+CGG | - | chr4.1:70889903-70889922 | None:intergenic | 25.0% |
| ! | TTTATAGTGTAGAATTGTGA+AGG | + | chr4.1:70888757-70888776 | MS.gene76731:intron | 25.0% |
| !! | ATTACAATGATTTTTCTGGA+AGG | + | chr4.1:70889379-70889398 | MS.gene76731:intron | 25.0% |
| !! | GAAGTTAACAAATTTTGCAT+TGG | - | chr4.1:70888181-70888200 | None:intergenic | 25.0% |
| !! | TAATATGGAGAAGTATAAGA+AGG | + | chr4.1:70889227-70889246 | MS.gene76731:CDS | 25.0% |
| !!! | AGAAAAGTGAGTCATTTTAT+TGG | - | chr4.1:70888559-70888578 | None:intergenic | 25.0% |
| !!! | GACAAGCTACATTTTTTTAA+AGG | - | chr4.1:70888003-70888022 | None:intergenic | 25.0% |
| !!! | GCTATTTTTGAGAAGAAAAT+CGG | - | chr4.1:70888874-70888893 | None:intergenic | 25.0% |
| !!! | GCTTTTATTTCTGATTTTGT+TGG | + | chr4.1:70887081-70887100 | MS.gene76731:CDS | 25.0% |
| AAAAACTAAGCTGCTTATTC+AGG | - | chr4.1:70888632-70888651 | None:intergenic | 30.0% | |
| AAATCACTAACCTTAGTTTC+AGG | - | chr4.1:70889030-70889049 | None:intergenic | 30.0% | |
| AAGATAAACCTATTGAGAAG+AGG | + | chr4.1:70887875-70887894 | MS.gene76731:intron | 30.0% | |
| AAGCTATTCATGATAGATCA+CGG | - | chr4.1:70889524-70889543 | None:intergenic | 30.0% | |
| ATAGCTTACGAAAGTAAACT+TGG | + | chr4.1:70889537-70889556 | MS.gene76731:intron | 30.0% | |
| ATATAGTTCGGTTCATTTGA+TGG | + | chr4.1:70888145-70888164 | MS.gene76731:intron | 30.0% | |
| ATTTGCAAATTACACATGAG+AGG | - | chr4.1:70887485-70887504 | None:intergenic | 30.0% | |
| CATTATCCTTCCTTAATATG+AGG | + | chr4.1:70889060-70889079 | MS.gene76731:intron | 30.0% | |
| GCATTCTAAACTAGCATATA+GGG | + | chr4.1:70887307-70887326 | MS.gene76731:intron | 30.0% | |
| GCTTAGGCCAATAATATATA+GGG | + | chr4.1:70887415-70887434 | MS.gene76731:intron | 30.0% | |
| GTTATGAGAAACTGATAACA+TGG | - | chr4.1:70888610-70888629 | None:intergenic | 30.0% | |
| TAAACGCTTGTGCAAATATT+AGG | - | chr4.1:70889603-70889622 | None:intergenic | 30.0% | |
| TATAGTTCGGTTCATTTGAT+GGG | + | chr4.1:70888146-70888165 | MS.gene76731:intron | 30.0% | |
| TTGTTTATTTACAGTGCAAG+AGG | + | chr4.1:70890015-70890034 | MS.gene76731:intron | 30.0% | |
| TTTCTCGCCCTATATATTAT+TGG | - | chr4.1:70887425-70887444 | None:intergenic | 30.0% | |
| TTTGCAAATTACACATGAGA+GGG | - | chr4.1:70887484-70887503 | None:intergenic | 30.0% | |
| ! | AAACAATTACTGACTAGGTA+AGG | - | chr4.1:70889412-70889431 | None:intergenic | 30.0% |
| ! | ACTAAAGGCATGCAATAATA+TGG | + | chr4.1:70889212-70889231 | MS.gene76731:CDS | 30.0% |
| ! | AGGCTAAAGTACTTAAGAAA+CGG | - | chr4.1:70888220-70888239 | None:intergenic | 30.0% |
| ! | TGTTTCTATTCGAAAACACT+TGG | - | chr4.1:70887922-70887941 | None:intergenic | 30.0% |
| !! | GCCATTTTCATTCATTAGTA+AGG | + | chr4.1:70887818-70887837 | MS.gene76731:intron | 30.0% |
| !! | GTCATTTTATTGGATAAGGA+AGG | - | chr4.1:70888549-70888568 | None:intergenic | 30.0% |
| !! | GTGAGTCATTTTATTGGATA+AGG | - | chr4.1:70888553-70888572 | None:intergenic | 30.0% |
| !! | TCTTTTCTTTTTTGCCTAGA+TGG | + | chr4.1:70887183-70887202 | MS.gene76731:intron | 30.0% |
| !! | TTGCTTAGATTGATTTTCAG+AGG | + | chr4.1:70888086-70888105 | MS.gene76731:intron | 30.0% |
| !!! | CGGTCAGATTTTTAAAACAT+TGG | - | chr4.1:70889711-70889730 | None:intergenic | 30.0% |
| AAATGCGTGTTCAATTTGTG+AGG | + | chr4.1:70888367-70888386 | MS.gene76731:CDS | 35.0% | |
| AAGATTTCTTCACAGGTTCA+TGG | + | chr4.1:70888946-70888965 | MS.gene76731:CDS | 35.0% | |
| AAGCGGATAAGAGATTAAAC+CGG | - | chr4.1:70889886-70889905 | None:intergenic | 35.0% | |
| AATGCTCCTCATATTAAGGA+AGG | - | chr4.1:70889069-70889088 | None:intergenic | 35.0% | |
| ACAGTATCCAGGTTATATAC+AGG | - | chr4.1:70888029-70888048 | None:intergenic | 35.0% | |
| ACCCTGGTAATTAACAATGT+TGG | + | chr4.1:70887140-70887159 | MS.gene76731:intron | 35.0% | |
| AGCCAACATTGTTAATTACC+AGG | - | chr4.1:70887145-70887164 | None:intergenic | 35.0% | |
| ATGTGTTCATGTTCATTCCA+TGG | + | chr4.1:70888112-70888131 | MS.gene76731:intron | 35.0% | |
| CAGAAGAAAGAATCAAGCAA+AGG | - | chr4.1:70888508-70888527 | None:intergenic | 35.0% | |
| CAGTATCCAGGTTATATACA+GGG | - | chr4.1:70888028-70888047 | None:intergenic | 35.0% | |
| CATAAGAACAGGTAACGTAT+CGG | - | chr4.1:70887956-70887975 | None:intergenic | 35.0% | |
| CGCTTAGGCCAATAATATAT+AGG | + | chr4.1:70887414-70887433 | MS.gene76731:intron | 35.0% | |
| CTCTAATGCTCCTCATATTA+AGG | - | chr4.1:70889073-70889092 | None:intergenic | 35.0% | |
| CTTCTGAGTCATGGTTTAAT+TGG | - | chr4.1:70889858-70889877 | None:intergenic | 35.0% | |
| CTTTGGCTACTTCACTTATT+TGG | - | chr4.1:70887849-70887868 | None:intergenic | 35.0% | |
| GCCAACATTGTTAATTACCA+GGG | - | chr4.1:70887144-70887163 | None:intergenic | 35.0% | |
| GGCATTCTAAACTAGCATAT+AGG | + | chr4.1:70887306-70887325 | MS.gene76731:intron | 35.0% | |
| GTTACCTGTTCTTATGTAGT+CGG | + | chr4.1:70887960-70887979 | MS.gene76731:intron | 35.0% | |
| GTTGAATGATCCTGAAACTA+AGG | + | chr4.1:70889017-70889036 | MS.gene76731:CDS | 35.0% | |
| TACAATCAGAAACAGTATCC+AGG | - | chr4.1:70888040-70888059 | None:intergenic | 35.0% | |
| TAGATAAGTAGTAGCTCACT+TGG | - | chr4.1:70889669-70889688 | None:intergenic | 35.0% | |
| TCACAAATTGAACACGCATT+TGG | - | chr4.1:70888368-70888387 | None:intergenic | 35.0% | |
| TCTAAAGGATAACAAGACTC+AGG | + | chr4.1:70888415-70888434 | MS.gene76731:CDS | 35.0% | |
| TGAAGGAATAAGAACTTAGC+AGG | + | chr4.1:70888774-70888793 | MS.gene76731:intron | 35.0% | |
| TTATTTACAGTGCAAGAGGA+TGG | + | chr4.1:70890019-70890038 | MS.gene76731:intron | 35.0% | |
| TTCTAAACTAGCATATAGGG+CGG | + | chr4.1:70887310-70887329 | MS.gene76731:intron | 35.0% | |
| ! | AAACGGGCTTAGATTTGAAA+GGG | - | chr4.1:70888203-70888222 | None:intergenic | 35.0% |
| ! | CATTGTACAGTGCTTTGAAT+TGG | + | chr4.1:70888834-70888853 | MS.gene76731:intron | 35.0% |
| ! | GGCTAAAGTACTTAAGAAAC+GGG | - | chr4.1:70888219-70888238 | None:intergenic | 35.0% |
| ! | TAGCGTAATGGTAAGGTTTT+TGG | - | chr4.1:70887708-70887727 | None:intergenic | 35.0% |
| ! | TATGGAGAAGTATAAGAAGG+AGG | + | chr4.1:70889230-70889249 | MS.gene76731:CDS | 35.0% |
| ! | TCATTTTGCATGAGATCCTT+TGG | + | chr4.1:70889320-70889339 | MS.gene76731:intron | 35.0% |
| ! | TCGAAAACACTTGGACTTTT+TGG | - | chr4.1:70887913-70887932 | None:intergenic | 35.0% |
| !! | AAAATAGCTCTAATGAAGCC+TGG | + | chr4.1:70888886-70888905 | MS.gene76731:CDS | 35.0% |
| !! | TCTGCATTGACTAGAATCAA+TGG | - | chr4.1:70890059-70890078 | None:intergenic | 35.0% |
| AAATCTTTGCAGACTCGCAA+AGG | - | chr4.1:70888933-70888952 | None:intergenic | 40.0% | |
| ACTCGGATTGATATCTGATG+TGG | + | chr4.1:70887769-70887788 | MS.gene76731:intron | 40.0% | |
| AGATACCGTTGCGGAATTAT+TGG | + | chr4.1:70888990-70889009 | MS.gene76731:CDS | 40.0% | |
| AGTAAACTTGGAGCGACTTA+TGG | + | chr4.1:70889549-70889568 | MS.gene76731:intron | 40.0% | |
| ATCTTCTTACCATTGCGCTT+AGG | + | chr4.1:70887399-70887418 | MS.gene76731:intron | 40.0% | |
| CAATCAGAGAGATTGTGTCT+AGG | + | chr4.1:70887372-70887391 | MS.gene76731:intron | 40.0% | |
| CAGGTTCATGGAAATAGTTG+TGG | + | chr4.1:70888958-70888977 | MS.gene76731:CDS | 40.0% | |
| CTAGACACAATCTCTCTGAT+TGG | - | chr4.1:70887374-70887393 | None:intergenic | 40.0% | |
| CTCAACCAATAATTCCGCAA+CGG | - | chr4.1:70888998-70889017 | None:intergenic | 40.0% | |
| GAGGTGACAGGTTTAAATCT+TGG | - | chr4.1:70887674-70887693 | None:intergenic | 40.0% | |
| GGATTGATATCTGATGTGGA+AGG | + | chr4.1:70887773-70887792 | MS.gene76731:intron | 40.0% | |
| GTCTGCAAAGATTTCTTCAC+AGG | + | chr4.1:70888939-70888958 | MS.gene76731:CDS | 40.0% | |
| TCAGAATGCCTCTTCTCAAT+AGG | - | chr4.1:70887886-70887905 | None:intergenic | 40.0% | |
| TCTGTTGAACCGGATTGAAT+CGG | + | chr4.1:70889776-70889795 | MS.gene76731:intron | 40.0% | |
| TGAGCATTAGCGTAATGGTA+AGG | - | chr4.1:70887715-70887734 | None:intergenic | 40.0% | |
| TGATATCTGATGTGGAAGGA+TGG | + | chr4.1:70887777-70887796 | MS.gene76731:intron | 40.0% | |
| TGCATATATCTGCTGTCTTC+AGG | - | chr4.1:70890088-70890107 | None:intergenic | 40.0% | |
| TTCTCTCTGTGAATTGTGAG+AGG | + | chr4.1:70887565-70887584 | MS.gene76731:intron | 40.0% | |
| TTCTTCCACTATTGTTAGCC+AGG | + | chr4.1:70890127-70890146 | MS.gene76731:CDS | 40.0% | |
| ! | AGGTAACGTATCGGTCAAAA+GGG | - | chr4.1:70887947-70887966 | None:intergenic | 40.0% |
| ! | CTTTTGCAAAGATACCGTTG+CGG | + | chr4.1:70888981-70889000 | MS.gene76731:CDS | 40.0% |
| ! | GAAACGGGCTTAGATTTGAA+AGG | - | chr4.1:70888204-70888223 | None:intergenic | 40.0% |
| ! | GGCTAACAATAGTGGAAGAA+GGG | - | chr4.1:70890127-70890146 | None:intergenic | 40.0% |
| ! | TATTATTGGCCTAAGCGCAA+TGG | - | chr4.1:70887411-70887430 | None:intergenic | 40.0% |
| ! | TGGCTAACAATAGTGGAAGA+AGG | - | chr4.1:70890128-70890147 | None:intergenic | 40.0% |
| ! | TGTACAGTGCTTTGAATTGG+TGG | + | chr4.1:70888837-70888856 | MS.gene76731:intron | 40.0% |
| !! | TTGAGAAGAGGCATTCTGAA+AGG | + | chr4.1:70887887-70887906 | MS.gene76731:intron | 40.0% |
| !!! | AAGAGGATGGTTTTCGAGTA+TGG | + | chr4.1:70890032-70890051 | MS.gene76731:CDS | 40.0% |
| !!! | GTTTTTGGTTTGTAACCTCG+AGG | - | chr4.1:70887693-70887712 | None:intergenic | 40.0% |
| AACAGAGCTGCAGTATAACC+GGG | - | chr4.1:70889762-70889781 | None:intergenic | 45.0% | |
| AAGGGTGAGCATTAGCGTAA+TGG | - | chr4.1:70887720-70887739 | None:intergenic | 45.0% | |
| AGCTTCCTGGCTAACAATAG+TGG | - | chr4.1:70890135-70890154 | None:intergenic | 45.0% | |
| ATAACCGGGGTTAAACAGAC+CGG | - | chr4.1:70889748-70889767 | None:intergenic | 45.0% | |
| ATACTGCAGCTCTGTTGAAC+CGG | + | chr4.1:70889766-70889785 | MS.gene76731:intron | 45.0% | |
| ATGTAGTCGGCTAGTATAGC+CGG | + | chr4.1:70887973-70887992 | MS.gene76731:intron | 45.0% | |
| CAAACCTGCTCGTTGAAAGA+CGG | - | chr4.1:70888482-70888501 | None:intergenic | 45.0% | |
| CAACAGAGCTGCAGTATAAC+CGG | - | chr4.1:70889763-70889782 | None:intergenic | 45.0% | |
| CCATGACTCAGAAGTTTCAC+CGG | + | chr4.1:70889864-70889883 | MS.gene76731:intron | 45.0% | |
| CGTTGAAAGACGGAAGATGA+CGG | - | chr4.1:70888472-70888491 | None:intergenic | 45.0% | |
| CTAGCCGACTACATAAGAAC+AGG | - | chr4.1:70887967-70887986 | None:intergenic | 45.0% | |
| CTGTTGAACCGGATTGAATC+GGG | + | chr4.1:70889777-70889796 | MS.gene76731:intron | 45.0% | |
| GATTTAAACCTGTCACCTCG+AGG | + | chr4.1:70887675-70887694 | MS.gene76731:intron | 45.0% | |
| TAGTAGCTCACTTGGCACTA+CGG | - | chr4.1:70889661-70889680 | None:intergenic | 45.0% | |
| TGAACCATTTCAACCAGGGT+TGG | + | chr4.1:70889802-70889821 | MS.gene76731:intron | 45.0% | |
| TGTCAGCCCTGTATATAACC+TGG | + | chr4.1:70888019-70888038 | MS.gene76731:intron | 45.0% | |
| TGTTGAACCGGATTGAATCG+GGG | + | chr4.1:70889778-70889797 | MS.gene76731:intron | 45.0% | |
| ! | AACAATAGTGGAAGAAGGGC+AGG | - | chr4.1:70890123-70890142 | None:intergenic | 45.0% |
| ! | AACTTTTCGCAGAGTTCTCC+AGG | - | chr4.1:70888907-70888926 | None:intergenic | 45.0% |
| ! | CAGGTAACGTATCGGTCAAA+AGG | - | chr4.1:70887948-70887967 | None:intergenic | 45.0% |
| !!! | GATTTTGTTGGGTGCTGCTT+GGG | + | chr4.1:70887093-70887112 | MS.gene76731:CDS | 45.0% |
| !!! | TGATTTTGTTGGGTGCTGCT+TGG | + | chr4.1:70887092-70887111 | MS.gene76731:CDS | 45.0% |
| !!! | TAATTGTTTTATATTTTTAA+TGG | + | chr4.1:70889423-70889442 | MS.gene76731:intron | 5.0% |
| AAACAGACCGGCGAATTGAC+TGG | - | chr4.1:70889736-70889755 | None:intergenic | 50.0% | |
| AATTCCGCTAGGTGAGGTCA+GGG | + | chr4.1:70887346-70887365 | MS.gene76731:intron | 50.0% | |
| ACAGAGCTGCAGTATAACCG+GGG | - | chr4.1:70889761-70889780 | None:intergenic | 50.0% | |
| AGAAGTTGAGTTAGGGCGAG+TGG | + | chr4.1:70887457-70887476 | MS.gene76731:intron | 50.0% | |
| AGTAGCTCACTTGGCACTAC+GGG | - | chr4.1:70889660-70889679 | None:intergenic | 50.0% | |
| ATGATCCGCTCATGTGAGGT+TGG | + | chr4.1:70887625-70887644 | MS.gene76731:intron | 50.0% | |
| CAATGCACGAGAATTCCGCT+AGG | + | chr4.1:70887335-70887354 | MS.gene76731:intron | 50.0% | |
| CCGGTGAAACTTCTGAGTCA+TGG | - | chr4.1:70889867-70889886 | None:intergenic | 50.0% | |
| CTTCCATGATTGCAGCTTCC+TGG | - | chr4.1:70890148-70890167 | None:intergenic | 50.0% | |
| GCAAGAGAGTTTGCAAACCC+TGG | + | chr4.1:70887124-70887143 | MS.gene76731:CDS | 50.0% | |
| GGGCTGAACCATTTCAACCA+GGG | + | chr4.1:70889798-70889817 | MS.gene76731:intron | 50.0% | |
| GTTTGTAACCTCGAGGTGAC+AGG | - | chr4.1:70887686-70887705 | None:intergenic | 50.0% | |
| TAGCCAGGAAGCTGCAATCA+TGG | + | chr4.1:70890142-70890161 | MS.gene76731:CDS | 50.0% | |
| TCGACCAACCCTGGTTGAAA+TGG | - | chr4.1:70889809-70889828 | None:intergenic | 50.0% | |
| TCTTCCGTCTTTCAACGAGC+AGG | + | chr4.1:70888475-70888494 | MS.gene76731:CDS | 50.0% | |
| TCTTTGCAGACTCGCAAAGG+TGG | - | chr4.1:70888930-70888949 | None:intergenic | 50.0% | |
| TGAGATGATCCGCTCATGTG+AGG | + | chr4.1:70887621-70887640 | MS.gene76731:intron | 50.0% | |
| TGATCCGCTCATGTGAGGTT+GGG | + | chr4.1:70887626-70887645 | MS.gene76731:intron | 50.0% | |
| TGTGAGGTTGGGGAGTCAAA+CGG | + | chr4.1:70887637-70887656 | MS.gene76731:intron | 50.0% | |
| ! | GATGACGGCAGGTATTGTGA+AGG | - | chr4.1:70888457-70888476 | None:intergenic | 50.0% |
| ACTCCCCAACCTCACATGAG+CGG | - | chr4.1:70887633-70887652 | None:intergenic | 55.0% | |
| CACGAGAATTCCGCTAGGTG+AGG | + | chr4.1:70887340-70887359 | MS.gene76731:intron | 55.0% | |
| GAATTCCGCTAGGTGAGGTC+AGG | + | chr4.1:70887345-70887364 | MS.gene76731:intron | 55.0% | |
| GACCGAACCAGTCAATTCGC+CGG | + | chr4.1:70889726-70889745 | MS.gene76731:intron | 55.0% | |
| GATCCGCTCATGTGAGGTTG+GGG | + | chr4.1:70887627-70887646 | MS.gene76731:intron | 55.0% | |
| GGGGCTGAACCATTTCAACC+AGG | + | chr4.1:70889797-70889816 | MS.gene76731:intron | 55.0% | |
| GGTTCAGCCCCGATTCAATC+CGG | - | chr4.1:70889788-70889807 | None:intergenic | 55.0% | |
| TTCGCCGGTCTGTTTAACCC+CGG | + | chr4.1:70889741-70889760 | MS.gene76731:intron | 55.0% | |
| ! | GAAAGACGGAAGATGACGGC+AGG | - | chr4.1:70888468-70888487 | None:intergenic | 55.0% |
| ! | GACCGGCGAATTGACTGGTT+CGG | - | chr4.1:70889731-70889750 | None:intergenic | 55.0% |
| !! | TAAACCGGTTCGACCAACCC+TGG | - | chr4.1:70889818-70889837 | None:intergenic | 55.0% |
| !! | TCAACCAGGGTTGGTCGAAC+CGG | + | chr4.1:70889811-70889830 | MS.gene76731:intron | 55.0% |
| GGCGCCCTGACCTCACCTAG+CGG | - | chr4.1:70887353-70887372 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 70887064 | 70890193 | 70887064 | ID=MS.gene76731 |
| chr4.1 | mRNA | 70887064 | 70890193 | 70887064 | ID=MS.gene76731.t1;Parent=MS.gene76731 |
| chr4.1 | exon | 70887064 | 70887145 | 70887064 | ID=MS.gene76731.t1.exon1;Parent=MS.gene76731.t1 |
| chr4.1 | CDS | 70887064 | 70887145 | 70887064 | ID=cds.MS.gene76731.t1;Parent=MS.gene76731.t1 |
| chr4.1 | exon | 70888351 | 70888496 | 70888351 | ID=MS.gene76731.t1.exon2;Parent=MS.gene76731.t1 |
| chr4.1 | CDS | 70888351 | 70888496 | 70888351 | ID=cds.MS.gene76731.t1;Parent=MS.gene76731.t1 |
| chr4.1 | exon | 70888844 | 70889038 | 70888844 | ID=MS.gene76731.t1.exon3;Parent=MS.gene76731.t1 |
| chr4.1 | CDS | 70888844 | 70889038 | 70888844 | ID=cds.MS.gene76731.t1;Parent=MS.gene76731.t1 |
| chr4.1 | exon | 70889192 | 70889251 | 70889192 | ID=MS.gene76731.t1.exon4;Parent=MS.gene76731.t1 |
| chr4.1 | CDS | 70889192 | 70889251 | 70889192 | ID=cds.MS.gene76731.t1;Parent=MS.gene76731.t1 |
| chr4.1 | exon | 70890029 | 70890193 | 70890029 | ID=MS.gene76731.t1.exon5;Parent=MS.gene76731.t1 |
| chr4.1 | CDS | 70890029 | 70890193 | 70890029 | ID=cds.MS.gene76731.t1;Parent=MS.gene76731.t1 |
| Gene Sequence |
| Protein sequence |
