Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76944.t1 | RHN44099.1 | 90.8 | 304 | 28 | 0 | 1 | 304 | 141 | 444 | 1.20E-149 | 539.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76944.t1 | A0A396GSG1 | 90.8 | 304 | 28 | 0 | 1 | 304 | 141 | 444 | 8.5e-150 | 539.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049378 | MS.gene76944 | 0.80626 | 8.97E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76944.t1 | MTR_7g007590 | 82.237 | 304 | 29 | 2 | 1 | 304 | 139 | 417 | 3.19e-178 | 498 |
| MS.gene76944.t1 | MTR_8g047200 | 72.125 | 287 | 43 | 5 | 1 | 271 | 1 | 266 | 2.19e-135 | 384 |
| MS.gene76944.t1 | MTR_8g006760 | 47.179 | 195 | 99 | 4 | 2 | 193 | 147 | 340 | 6.94e-47 | 162 |
| MS.gene76944.t1 | MTR_6g066120 | 83.051 | 59 | 10 | 0 | 245 | 303 | 4 | 62 | 3.37e-27 | 102 |
| MS.gene76944.t1 | MTR_7g407120 | 65.000 | 80 | 10 | 1 | 120 | 199 | 1 | 62 | 2.29e-26 | 104 |
| MS.gene76944.t1 | MTR_7g407120 | 90.000 | 30 | 3 | 0 | 268 | 297 | 176 | 205 | 6.35e-12 | 64.7 |
| MS.gene76944.t1 | MTR_4g087360 | 29.464 | 224 | 127 | 6 | 1 | 198 | 115 | 333 | 9.36e-16 | 77.8 |
| MS.gene76944.t1 | MTR_4g087360 | 29.464 | 224 | 127 | 6 | 1 | 198 | 143 | 361 | 1.60e-15 | 77.0 |
| MS.gene76944.t1 | MTR_4g087350 | 30.864 | 162 | 105 | 3 | 2 | 160 | 103 | 260 | 4.00e-12 | 65.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76944.t1 | AT4G37440 | 32.558 | 215 | 105 | 4 | 1 | 194 | 145 | 340 | 3.95e-26 | 107 |
| MS.gene76944.t1 | AT4G37440 | 32.558 | 215 | 105 | 4 | 1 | 194 | 145 | 340 | 4.43e-26 | 107 |
| MS.gene76944.t1 | AT4G37440 | 32.558 | 215 | 105 | 4 | 1 | 194 | 145 | 340 | 6.27e-26 | 106 |
| MS.gene76944.t1 | AT3G59670 | 31.276 | 243 | 140 | 9 | 1 | 229 | 147 | 376 | 1.80e-20 | 91.7 |
| MS.gene76944.t1 | AT3G50040 | 47.253 | 91 | 47 | 1 | 1 | 90 | 123 | 213 | 3.26e-17 | 82.0 |
| MS.gene76944.t1 | AT3G50040 | 47.253 | 91 | 47 | 1 | 1 | 90 | 123 | 213 | 3.26e-17 | 82.0 |
| MS.gene76944.t1 | AT3G50040 | 47.253 | 91 | 47 | 1 | 1 | 90 | 123 | 213 | 3.26e-17 | 82.0 |
| MS.gene76944.t1 | AT3G50040 | 47.253 | 91 | 47 | 1 | 1 | 90 | 123 | 213 | 3.94e-17 | 81.3 |
Find 54 sgRNAs with CRISPR-Local
Find 106 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCAACTCAATCGAACATAAT+TGG | 0.156674 | 7.2:+90449632 | MS.gene76944:CDS |
| CTATAATGTGGCGCTCTAAA+TGG | 0.246676 | 7.2:+90448794 | None:intergenic |
| TAGGACTCAGTTTGAGGTTC+AGG | 0.288400 | 7.2:+90449829 | MS.gene76944:CDS |
| CTGCTCTTCAACTGATTCAT+TGG | 0.289020 | 7.2:-90450495 | None:intergenic |
| AAGTTTGCAGTAGACGATTT+TGG | 0.304395 | 7.2:+90448910 | MS.gene76944:CDS |
| AACATAATTGGGACATCTAA+TGG | 0.306111 | 7.2:+90449644 | MS.gene76944:CDS |
| CGCATATAACTCAGATTTAC+CGG | 0.319505 | 7.2:-90449735 | None:intergenic |
| CTTACCCTCCTTGTGTTCCT+AGG | 0.334663 | 7.2:-90450623 | None:intergenic |
| GTTGCAGAACAGAACTTTCC+TGG | 0.352244 | 7.2:-90449614 | None:intergenic |
| CTTTGAATTCCCTCAGATCT+AGG | 0.356218 | 7.2:-90448946 | None:intergenic |
| TGGAAATGGAATTTCTTTAC+CGG | 0.384742 | 7.2:-90449702 | None:intergenic |
| GGTAAAGAAATTCCATTTCC+AGG | 0.396939 | 7.2:+90449704 | MS.gene76944:CDS |
| GCTCATGATGGTCCCGTAGA+AGG | 0.405262 | 7.2:+90449164 | MS.gene76944:CDS |
| GGTTTAATAGAATGAGCATT+TGG | 0.407887 | 7.2:-90450575 | None:intergenic |
| CTGAGTCCTATTGGCAGATT+CGG | 0.414887 | 7.2:-90449816 | None:intergenic |
| AACCTCAAACTGAGTCCTAT+TGG | 0.417377 | 7.2:-90449825 | None:intergenic |
| CCGGCAAAACTACCTGGAAA+TGG | 0.424474 | 7.2:-90449716 | None:intergenic |
| AGGAGGGTAAGGAGGAAGTT+TGG | 0.434590 | 7.2:+90450635 | MS.gene76944:CDS |
| CAACTCAATCGAACATAATT+GGG | 0.435770 | 7.2:+90449633 | MS.gene76944:CDS |
| TGCCAATAGGACTCAGTTTG+AGG | 0.450554 | 7.2:+90449823 | MS.gene76944:CDS |
| CTTCCACCGAATCTGCCAAT+AGG | 0.458771 | 7.2:+90449810 | MS.gene76944:CDS |
| TGAAACTTGAGCTCGAGAAA+TGG | 0.461659 | 7.2:-90450522 | None:intergenic |
| AAAGGTAATGCTGATAATGT+TGG | 0.470836 | 7.2:+90449443 | MS.gene76944:intron |
| CTACGGGACCATCATGAGCT+TGG | 0.481763 | 7.2:-90449160 | None:intergenic |
| AGGACTCAGTTTGAGGTTCA+GGG | 0.482936 | 7.2:+90449830 | MS.gene76944:CDS |
| TTACCCTCCTTGTGTTCCTA+GGG | 0.489585 | 7.2:-90450622 | None:intergenic |
| AAGGTAATGCTGATAATGTT+GGG | 0.490300 | 7.2:+90449444 | MS.gene76944:intron |
| ATCATCGTGAAAACCTTCTA+CGG | 0.501729 | 7.2:-90449177 | None:intergenic |
| GATTTACCGGCAAAACTACC+TGG | 0.513694 | 7.2:-90449722 | None:intergenic |
| CTAGGAACACAAGGAGGGTA+AGG | 0.514099 | 7.2:+90450624 | MS.gene76944:CDS |
| AAGTCATGTGGAGAAAGAAC+AGG | 0.518229 | 7.2:+90448974 | MS.gene76944:CDS |
| AAGTTAAGAATTTGAAAACT+CGG | 0.530278 | 7.2:+90449567 | MS.gene76944:CDS |
| TCTGACATGGTCAGTGAGAA+TGG | 0.539568 | 7.2:+90450548 | MS.gene76944:CDS |
| GTTCCTAGGGAAATGAGTCT+TGG | 0.546241 | 7.2:-90450609 | None:intergenic |
| CTATTGGCAGATTCGGTGGA+AGG | 0.562254 | 7.2:-90449809 | None:intergenic |
| CTCATTTCCCTAGGAACACA+AGG | 0.573519 | 7.2:+90450615 | MS.gene76944:CDS |
| AATGCATTATCAACTCGAGA+AGG | 0.574177 | 7.2:+90449779 | MS.gene76944:CDS |
| CAAGTCAGTACCTAGATCTG+AGG | 0.578521 | 7.2:+90448936 | MS.gene76944:CDS |
| AGTCCTATTGGCAGATTCGG+TGG | 0.582070 | 7.2:-90449813 | None:intergenic |
| AGATCAAGTTAAACGATATG+TGG | 0.585624 | 7.2:+90449468 | MS.gene76944:CDS |
| TCATCGTGAAAACCTTCTAC+GGG | 0.589226 | 7.2:-90449176 | None:intergenic |
| CATCCAAGACTCATTTCCCT+AGG | 0.590843 | 7.2:+90450606 | MS.gene76944:CDS |
| GGAACACAAGGAGGGTAAGG+AGG | 0.597368 | 7.2:+90450627 | MS.gene76944:CDS |
| GAAATACGTAAAAGAGATTG+CGG | 0.605017 | 7.2:+90448855 | MS.gene76944:CDS |
| TTCAAAGGACTAAAGTCATG+TGG | 0.606978 | 7.2:+90448962 | MS.gene76944:CDS |
| AAGTCAGTACCTAGATCTGA+GGG | 0.610939 | 7.2:+90448937 | MS.gene76944:CDS |
| ATGCATTATCAACTCGAGAA+GGG | 0.618272 | 7.2:+90449780 | MS.gene76944:CDS |
| AGGTAATGCTGATAATGTTG+GGG | 0.628901 | 7.2:+90449445 | MS.gene76944:intron |
| TGAGTCTTGGATGTTGAACA+TGG | 0.629245 | 7.2:-90450596 | None:intergenic |
| ATTTCCCTAGGAACACAAGG+AGG | 0.639278 | 7.2:+90450618 | MS.gene76944:CDS |
| TCAAGTTTCAGACTCTGACA+TGG | 0.640134 | 7.2:+90450535 | MS.gene76944:CDS |
| CTAGATCTGAGGGAATTCAA+AGG | 0.647893 | 7.2:+90448947 | MS.gene76944:CDS |
| TTTCCCTAGGAACACAAGGA+GGG | 0.649586 | 7.2:+90450619 | MS.gene76944:CDS |
| CGGTAAATCTGAGTTATATG+CGG | 0.673597 | 7.2:+90449736 | MS.gene76944:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTAAAAATTTAGAATCTCA+TGG | - | chr7.2:90449398-90449417 | None:intergenic | 15.0% |
| !!! | ATTATAAACATTTTTCAAAC+TGG | + | chr7.2:90449342-90449361 | MS.gene76944:intron | 15.0% |
| !! | AAATGAGTATTAACAAAAAC+TGG | - | chr7.2:90450013-90450032 | None:intergenic | 20.0% |
| !! | AAGTTAAGAATTTGAAAACT+CGG | + | chr7.2:90449567-90449586 | MS.gene76944:CDS | 20.0% |
| !! | TTATCCTGAAAAAATGTTAT+TGG | + | chr7.2:90450037-90450056 | MS.gene76944:intron | 20.0% |
| !!! | AACTCCAAAATTTAAAGTAA+AGG | - | chr7.2:90450311-90450330 | None:intergenic | 20.0% |
| !!! | TATTTTACTATACAAATGAC+TGG | - | chr7.2:90450128-90450147 | None:intergenic | 20.0% |
| ! | AACAAAGAATACAGATAACA+TGG | - | chr7.2:90450173-90450192 | None:intergenic | 25.0% |
| ! | GGAAACTTATGCAATAAAAA+TGG | - | chr7.2:90449881-90449900 | None:intergenic | 25.0% |
| ! | TACTATGGTATGAAATTACT+TGG | + | chr7.2:90449054-90449073 | MS.gene76944:intron | 25.0% |
| ! | TCTGTTTCATTGATATGAAA+AGG | + | chr7.2:90449425-90449444 | MS.gene76944:intron | 25.0% |
| ! | TTCTTGTAATGTTATGATTC+AGG | + | chr7.2:90450460-90450479 | MS.gene76944:intron | 25.0% |
| !! | AAAAAATGTTATTGGTGTCT+TGG | + | chr7.2:90450045-90450064 | MS.gene76944:intron | 25.0% |
| !! | ACTGGATTATAAAAGTTTTG+TGG | - | chr7.2:90449995-90450014 | None:intergenic | 25.0% |
| !! | GGTACCTTTACTTTAAATTT+TGG | + | chr7.2:90450304-90450323 | MS.gene76944:intron | 25.0% |
| AACATAATTGGGACATCTAA+TGG | + | chr7.2:90449644-90449663 | MS.gene76944:CDS | 30.0% | |
| AACCTTAGTAGATGAACAAA+CGG | - | chr7.2:90450358-90450377 | None:intergenic | 30.0% | |
| AATAAAAACCAAGCTCATGA+TGG | + | chr7.2:90449152-90449171 | MS.gene76944:CDS | 30.0% | |
| ACTATCAACGCAAAATAAAC+TGG | - | chr7.2:90449102-90449121 | None:intergenic | 30.0% | |
| AGATCAAGTTAAACGATATG+TGG | + | chr7.2:90449468-90449487 | MS.gene76944:CDS | 30.0% | |
| ATATCAATGAAACAGAACAC+GGG | - | chr7.2:90449421-90449440 | None:intergenic | 30.0% | |
| CAACTCAATCGAACATAATT+GGG | + | chr7.2:90449633-90449652 | MS.gene76944:CDS | 30.0% | |
| CATAGTACGAGAAAAAACAA+TGG | - | chr7.2:90449041-90449060 | None:intergenic | 30.0% | |
| CATATCAATGAAACAGAACA+CGG | - | chr7.2:90449422-90449441 | None:intergenic | 30.0% | |
| GAAATACGTAAAAGAGATTG+CGG | + | chr7.2:90448855-90448874 | MS.gene76944:CDS | 30.0% | |
| GGTTTAATAGAATGAGCATT+TGG | - | chr7.2:90450578-90450597 | None:intergenic | 30.0% | |
| TGGAAATGGAATTTCTTTAC+CGG | - | chr7.2:90449705-90449724 | None:intergenic | 30.0% | |
| TTGTCAAATAAACGCTATAG+CGG | - | chr7.2:90450280-90450299 | None:intergenic | 30.0% | |
| ! | AAAGGTAATGCTGATAATGT+TGG | + | chr7.2:90449443-90449462 | MS.gene76944:intron | 30.0% |
| ! | AAGGTAATGCTGATAATGTT+GGG | + | chr7.2:90449444-90449463 | MS.gene76944:intron | 30.0% |
| ! | AATTTTCTTATGACCAGTCT+TGG | + | chr7.2:90450081-90450100 | MS.gene76944:intron | 30.0% |
| ! | ATTTTCAATCATGTCAACGA+AGG | - | chr7.2:90449528-90449547 | None:intergenic | 30.0% |
| ! | ATTTTGAACAACTTCCTTCA+CGG | - | chr7.2:90449955-90449974 | None:intergenic | 30.0% |
| !! | TAATGTTATGATTCAGGTTG+AGG | + | chr7.2:90450466-90450485 | MS.gene76944:intron | 30.0% |
| !! | TCCTGGATTTTCATTTTTCA+CGG | - | chr7.2:90449600-90449619 | None:intergenic | 30.0% |
| !!! | CATTGTTTTTTCTCGTACTA+TGG | + | chr7.2:90449039-90449058 | MS.gene76944:CDS | 30.0% |
| !!! | GACACCAATAACATTTTTTC+AGG | - | chr7.2:90450044-90450063 | None:intergenic | 30.0% |
| AATGCATTATCAACTCGAGA+AGG | + | chr7.2:90449779-90449798 | MS.gene76944:CDS | 35.0% | |
| ACCGTGAAAAATGAAAATCC+AGG | + | chr7.2:90449596-90449615 | MS.gene76944:CDS | 35.0% | |
| ACCTTAGTAGATGAACAAAC+GGG | - | chr7.2:90450357-90450376 | None:intergenic | 35.0% | |
| ACTAAACAAAACCAAGAGCA+TGG | - | chr7.2:90449914-90449933 | None:intergenic | 35.0% | |
| AGTCTCAACTTGTCATAACT+CGG | + | chr7.2:90450147-90450166 | MS.gene76944:intron | 35.0% | |
| ATCATCGTGAAAACCTTCTA+CGG | - | chr7.2:90449180-90449199 | None:intergenic | 35.0% | |
| ATCCTATTACGCAGAGTAAT+TGG | - | chr7.2:90450405-90450424 | None:intergenic | 35.0% | |
| ATGCATTATCAACTCGAGAA+GGG | + | chr7.2:90449780-90449799 | MS.gene76944:CDS | 35.0% | |
| ATGTAACTCTTGAACCTTGT+TGG | - | chr7.2:90449278-90449297 | None:intergenic | 35.0% | |
| ATTATGCAATCTATCCGTGA+AGG | + | chr7.2:90449938-90449957 | MS.gene76944:intron | 35.0% | |
| ATTTCACTATACACCAAGAC+TGG | - | chr7.2:90450097-90450116 | None:intergenic | 35.0% | |
| CGCATATAACTCAGATTTAC+CGG | - | chr7.2:90449738-90449757 | None:intergenic | 35.0% | |
| CGGTAAATCTGAGTTATATG+CGG | + | chr7.2:90449736-90449755 | MS.gene76944:CDS | 35.0% | |
| GCAACTCAATCGAACATAAT+TGG | + | chr7.2:90449632-90449651 | MS.gene76944:CDS | 35.0% | |
| GGTAAAGAAATTCCATTTCC+AGG | + | chr7.2:90449704-90449723 | MS.gene76944:CDS | 35.0% | |
| GTTAAAGTGTGAATCCAACA+AGG | + | chr7.2:90449261-90449280 | MS.gene76944:intron | 35.0% | |
| TAGCGTTTATTTGACAAGAC+TGG | + | chr7.2:90450283-90450302 | MS.gene76944:intron | 35.0% | |
| TTCAAAGGACTAAAGTCATG+TGG | + | chr7.2:90448962-90448981 | MS.gene76944:CDS | 35.0% | |
| ! | AAGTTTGCAGTAGACGATTT+TGG | + | chr7.2:90448910-90448929 | MS.gene76944:CDS | 35.0% |
| ! | AGGTAATGCTGATAATGTTG+GGG | + | chr7.2:90449445-90449464 | MS.gene76944:intron | 35.0% |
| ! | CATAATTCTGCTTCTTTTGC+CGG | + | chr7.2:90449683-90449702 | MS.gene76944:CDS | 35.0% |
| !! | TGAGCTTGGTTTTTATTCTC+TGG | - | chr7.2:90449149-90449168 | None:intergenic | 35.0% |
| AACCTCAAACTGAGTCCTAT+TGG | - | chr7.2:90449828-90449847 | None:intergenic | 40.0% | |
| AAGTCAGTACCTAGATCTGA+GGG | + | chr7.2:90448937-90448956 | MS.gene76944:CDS | 40.0% | |
| AAGTCATGTGGAGAAAGAAC+AGG | + | chr7.2:90448974-90448993 | MS.gene76944:CDS | 40.0% | |
| ACCCGTTTGTTCATCTACTA+AGG | + | chr7.2:90450353-90450372 | MS.gene76944:intron | 40.0% | |
| CTAGATCTGAGGGAATTCAA+AGG | + | chr7.2:90448947-90448966 | MS.gene76944:CDS | 40.0% | |
| CTTTGAATTCCCTCAGATCT+AGG | - | chr7.2:90448949-90448968 | None:intergenic | 40.0% | |
| GGGATATAACACTCTAGTGT+AGG | - | chr7.2:90450255-90450274 | None:intergenic | 40.0% | |
| GTCCAATTACTCTGCGTAAT+AGG | + | chr7.2:90450400-90450419 | MS.gene76944:intron | 40.0% | |
| TCAAATAAACGCTATAGCGG+CGG | - | chr7.2:90450277-90450296 | None:intergenic | 40.0% | |
| TCAAGTTTCAGACTCTGACA+TGG | + | chr7.2:90450535-90450554 | MS.gene76944:CDS | 40.0% | |
| TCATCGTGAAAACCTTCTAC+GGG | - | chr7.2:90449179-90449198 | None:intergenic | 40.0% | |
| TGAAACTTGAGCTCGAGAAA+TGG | - | chr7.2:90450525-90450544 | None:intergenic | 40.0% | |
| TGAGTCTTGGATGTTGAACA+TGG | - | chr7.2:90450599-90450618 | None:intergenic | 40.0% | |
| ! | CTGCTCTTCAACTGATTCAT+TGG | - | chr7.2:90450498-90450517 | None:intergenic | 40.0% |
| AAATAAACGCTATAGCGGCG+GGG | - | chr7.2:90450275-90450294 | None:intergenic | 45.0% | |
| ATTTCCCTAGGAACACAAGG+AGG | + | chr7.2:90450618-90450637 | MS.gene76944:CDS | 45.0% | |
| CAAATAAACGCTATAGCGGC+GGG | - | chr7.2:90450276-90450295 | None:intergenic | 45.0% | |
| CAAGTCAGTACCTAGATCTG+AGG | + | chr7.2:90448936-90448955 | MS.gene76944:CDS | 45.0% | |
| CATCCAAGACTCATTTCCCT+AGG | + | chr7.2:90450606-90450625 | MS.gene76944:CDS | 45.0% | |
| CTCATTTCCCTAGGAACACA+AGG | + | chr7.2:90450615-90450634 | MS.gene76944:CDS | 45.0% | |
| CTGAGTCCTATTGGCAGATT+CGG | - | chr7.2:90449819-90449838 | None:intergenic | 45.0% | |
| GATTTACCGGCAAAACTACC+TGG | - | chr7.2:90449725-90449744 | None:intergenic | 45.0% | |
| GTTCCTAGGGAAATGAGTCT+TGG | - | chr7.2:90450612-90450631 | None:intergenic | 45.0% | |
| GTTGCAGAACAGAACTTTCC+TGG | - | chr7.2:90449617-90449636 | None:intergenic | 45.0% | |
| TCTGACATGGTCAGTGAGAA+TGG | + | chr7.2:90450548-90450567 | MS.gene76944:CDS | 45.0% | |
| TGCCAATAGGACTCAGTTTG+AGG | + | chr7.2:90449823-90449842 | MS.gene76944:CDS | 45.0% | |
| TTACCCTCCTTGTGTTCCTA+GGG | - | chr7.2:90450625-90450644 | None:intergenic | 45.0% | |
| TTTCCCTAGGAACACAAGGA+GGG | + | chr7.2:90450619-90450638 | MS.gene76944:CDS | 45.0% | |
| ! | AGGACTCAGTTTGAGGTTCA+GGG | + | chr7.2:90449830-90449849 | MS.gene76944:CDS | 45.0% |
| ! | AGGTTTTCACGATGATGTCG+TGG | + | chr7.2:90449184-90449203 | MS.gene76944:CDS | 45.0% |
| ! | GGTTTTCACGATGATGTCGT+GGG | + | chr7.2:90449185-90449204 | MS.gene76944:CDS | 45.0% |
| ! | TAGGACTCAGTTTGAGGTTC+AGG | + | chr7.2:90449829-90449848 | MS.gene76944:CDS | 45.0% |
| !! | CCATTTCCAGGTAGTTTTGC+CGG | + | chr7.2:90449716-90449735 | MS.gene76944:CDS | 45.0% |
| !! | TTAAAAAACATTATATTATA+TGG | - | chr7.2:90449218-90449237 | None:intergenic | 5.0% |
| AGGAGGGTAAGGAGGAAGTT+TGG | + | chr7.2:90450635-90450654 | MS.gene76944:CDS | 50.0% | |
| AGTCCTATTGGCAGATTCGG+TGG | - | chr7.2:90449816-90449835 | None:intergenic | 50.0% | |
| CCGGCAAAACTACCTGGAAA+TGG | - | chr7.2:90449719-90449738 | None:intergenic | 50.0% | |
| CTAGGAACACAAGGAGGGTA+AGG | + | chr7.2:90450624-90450643 | MS.gene76944:CDS | 50.0% | |
| CTTACCCTCCTTGTGTTCCT+AGG | - | chr7.2:90450626-90450645 | None:intergenic | 50.0% | |
| CTTCCACCGAATCTGCCAAT+AGG | + | chr7.2:90449810-90449829 | MS.gene76944:CDS | 50.0% | |
| ! | CAAAACCAAGAGCATGGAGC+AGG | - | chr7.2:90449908-90449927 | None:intergenic | 50.0% |
| !! | CTATTGGCAGATTCGGTGGA+AGG | - | chr7.2:90449812-90449831 | None:intergenic | 50.0% |
| CTACGGGACCATCATGAGCT+TGG | - | chr7.2:90449163-90449182 | None:intergenic | 55.0% | |
| GCTCATGATGGTCCCGTAGA+AGG | + | chr7.2:90449164-90449183 | MS.gene76944:CDS | 55.0% | |
| GGAACACAAGGAGGGTAAGG+AGG | + | chr7.2:90450627-90450646 | MS.gene76944:CDS | 55.0% | |
| CACTGCCTGCTCCATGCTCT+TGG | + | chr7.2:90449900-90449919 | MS.gene76944:intron | 60.0% | |
| ! | CAAGAGCATGGAGCAGGCAG+TGG | - | chr7.2:90449902-90449921 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.2 | gene | 90448799 | 90450664 | 90448799 | ID=MS.gene76944 |
| chr7.2 | mRNA | 90448799 | 90450664 | 90448799 | ID=MS.gene76944.t1;Parent=MS.gene76944 |
| chr7.2 | exon | 90448799 | 90449060 | 90448799 | ID=MS.gene76944.t1.exon1;Parent=MS.gene76944.t1 |
| chr7.2 | CDS | 90448799 | 90449060 | 90448799 | ID=cds.MS.gene76944.t1;Parent=MS.gene76944.t1 |
| chr7.2 | exon | 90449150 | 90449206 | 90449150 | ID=MS.gene76944.t1.exon2;Parent=MS.gene76944.t1 |
| chr7.2 | CDS | 90449150 | 90449206 | 90449150 | ID=cds.MS.gene76944.t1;Parent=MS.gene76944.t1 |
| chr7.2 | exon | 90449447 | 90449859 | 90449447 | ID=MS.gene76944.t1.exon3;Parent=MS.gene76944.t1 |
| chr7.2 | CDS | 90449447 | 90449859 | 90449447 | ID=cds.MS.gene76944.t1;Parent=MS.gene76944.t1 |
| chr7.2 | exon | 90450482 | 90450664 | 90450482 | ID=MS.gene76944.t1.exon4;Parent=MS.gene76944.t1 |
| chr7.2 | CDS | 90450482 | 90450664 | 90450482 | ID=cds.MS.gene76944.t1;Parent=MS.gene76944.t1 |
| Gene Sequence |
| Protein sequence |
