AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene049378


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene049378.t1 MTR_3g094300 99.177 243 2 0 1 243 44 286 0.0 512
MS.gene049378.t1 MTR_1g090867 45.213 188 96 3 23 204 68 254 5.40e-44 152
MS.gene049378.t1 MTR_7g034465 39.205 176 105 2 29 204 208 381 1.25e-30 119
MS.gene049378.t1 MTR_7g034465 39.205 176 105 2 29 204 314 487 3.36e-30 118
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene049378.t1 AT3G10940 79.565 230 46 1 15 243 53 282 3.05e-140 394
MS.gene049378.t1 AT3G52180 42.439 205 116 2 22 225 66 269 1.44e-46 156
MS.gene049378.t1 AT3G52180 42.439 205 116 2 22 225 66 269 2.57e-46 156
MS.gene049378.t1 AT3G52180 42.439 205 116 2 22 225 66 269 3.68e-45 155
MS.gene049378.t1 AT3G52180 44.000 175 96 2 52 225 1 174 1.66e-39 138
MS.gene049378.t1 AT3G01510 38.220 191 115 3 14 204 111 298 5.96e-32 121
MS.gene049378.t1 AT3G01510 38.220 191 115 3 14 204 111 298 5.96e-32 121
MS.gene049378.t1 AT3G01510 38.220 191 115 3 14 204 253 440 1.79e-31 121

Find 54 sgRNAs with CRISPR-Local

Find 186 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGACAATTGCTTATTTGTTC+TGG 0.251643 3.1:-75450993 MS.gene049378:CDS
ATCTAAATCTAATGATTTAA+TGG 0.263330 3.1:-75452894 MS.gene049378:CDS
AGTCTTCCAGACCATGCTTT+TGG 0.273596 3.1:-75450164 MS.gene049378:CDS
TCTAAGGATGACACTGCTTT+AGG 0.291760 3.1:+75451087 None:intergenic
CTCAGAAATTGCCCATTCTA+AGG 0.297875 3.1:+75451071 None:intergenic
TTAAGGTGATCTAAATCTTC+AGG 0.302598 3.1:+75451749 None:intergenic
ATCTTCAGGTTTCTGTGGTT+GGG 0.311400 3.1:+75451763 None:intergenic
CCACACCTTCTTCCTTCTTA+AGG 0.313968 3.1:+75451732 None:intergenic
AGGATAAGGATGCTGAGTTT+TGG 0.315172 3.1:-75451688 MS.gene049378:CDS
AGTGCACTTCGCAAAGAGTT+TGG 0.350408 3.1:+75451111 None:intergenic
ACAAGGAGCAACTTATGATT+TGG 0.358184 3.1:-75450219 MS.gene049378:CDS
AATCTTCAGGTTTCTGTGGT+TGG 0.369739 3.1:+75451762 None:intergenic
CTTTGAAGTTAGCATATCAT+AGG 0.392022 3.1:+75450271 None:intergenic
TCTAAACTTGCAACAGGATA+AGG 0.402340 3.1:-75451702 MS.gene049378:CDS
AACCGTGTCCGCGCTCTTCG+TGG 0.426634 3.1:-75450107 MS.gene049378:CDS
TTATGAGTATCATCACGATC+TGG 0.441184 3.1:-75452831 MS.gene049378:CDS
AGATTTAGATACCCTCTTGC+TGG 0.449666 3.1:+75452907 None:intergenic
ATATATTCTAAACTTGCAAC+AGG 0.450710 3.1:-75451708 MS.gene049378:CDS
AGATCGTGATGATACTCATA+AGG 0.451970 3.1:+75452833 None:intergenic
AAGCAGTGTCATCCTTAGAA+TGG 0.458306 3.1:-75451083 MS.gene049378:CDS
CTCTCAAATGGCTCCTTCCA+TGG 0.458673 3.1:+75450185 None:intergenic
TTTGTTGTACACTATCAGAA+AGG 0.464043 3.1:-75452949 MS.gene049378:CDS
AAATAAGCAATTGTCACTGC+TGG 0.476094 3.1:+75451000 None:intergenic
ATAACTGACAATTTGATTGT+GGG 0.477333 3.1:-75451788 MS.gene049378:CDS
TTGTTGTACACTATCAGAAA+GGG 0.479495 3.1:-75452948 MS.gene049378:CDS
ATATCCCCAAAAGCATGGTC+TGG 0.485767 3.1:+75450158 None:intergenic
TATAACTGACAATTTGATTG+TGG 0.487738 3.1:-75451789 MS.gene049378:CDS
GATCACCTTAAGAAGGAAGA+AGG 0.505838 3.1:-75451737 MS.gene049378:CDS
GTTTATGTGCACTGTACTGC+AGG 0.506912 3.1:-75451036 MS.gene049378:CDS
AGCAGTGTCATCCTTAGAAT+GGG 0.512745 3.1:-75451082 MS.gene049378:CDS
GGGATATAGCAGATTGGGAG+AGG 0.512919 3.1:-75450142 MS.gene049378:CDS
GATCGTGATGATACTCATAA+GGG 0.517872 3.1:+75452834 None:intergenic
TGGGCAATTTCTGAGGGAAA+AGG 0.518950 3.1:-75451063 MS.gene049378:CDS
TGGTCTGGAAGACTCTCAAA+TGG 0.522030 3.1:+75450173 None:intergenic
CTTAGAATGGGCAATTTCTG+AGG 0.532588 3.1:-75451070 MS.gene049378:CDS
TCTAAATCTTCAGGTTTCTG+TGG 0.534119 3.1:+75451758 None:intergenic
TATGAGTATCATCACGATCT+GGG 0.535409 3.1:-75452830 MS.gene049378:intron
GTGCACTGTACTGCAGGACT+TGG 0.536912 3.1:-75451030 MS.gene049378:CDS
AGATTTAGATCACCTTAAGA+AGG 0.538768 3.1:-75451744 MS.gene049378:CDS
CCAAATAAAAGAGCAATACA+AGG 0.573394 3.1:-75450236 MS.gene049378:CDS
TTAGAATGGGCAATTTCTGA+GGG 0.579734 3.1:-75451069 MS.gene049378:CDS
TAACTGACAATTTGATTGTG+GGG 0.583931 3.1:-75451787 MS.gene049378:CDS
TTCCACGAAGAGCGCGGACA+CGG 0.585377 3.1:+75450105 None:intergenic
TAGCTATGAAGAAGATGATG+AGG 0.589831 3.1:-75452859 MS.gene049378:CDS
CTGCTATATCCCCAAAAGCA+TGG 0.592436 3.1:+75450153 None:intergenic
TTAGATACCCTCTTGCTGGT+AGG 0.594440 3.1:+75452911 None:intergenic
CCTTAAGAAGGAAGAAGGTG+TGG 0.624960 3.1:-75451732 MS.gene049378:CDS
AAGAGAATCCTACCAGCAAG+AGG 0.628874 3.1:-75452919 MS.gene049378:CDS
GTTGTACACTATCAGAAAGG+GGG 0.629451 3.1:-75452946 MS.gene049378:CDS
TGTTGTACACTATCAGAAAG+GGG 0.630282 3.1:-75452947 MS.gene049378:CDS
GTCAGGTTCCACGAAGAGCG+CGG 0.664911 3.1:+75450099 None:intergenic
AGAGAATCCTACCAGCAAGA+GGG 0.665221 3.1:-75452918 MS.gene049378:CDS
CTAACTTCAAAGAGACCTTG+TGG 0.666372 3.1:-75450260 MS.gene049378:CDS
AACTTGAAATTAGACACATG+AGG 0.720805 3.1:-75451628 MS.gene049378:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AACAATTAATGAAAAATAAT+TGG + chr3.1:75451176-75451195 None:intergenic 10.0%
!!! ATCACATTTTTAAAAAAATT+GGG + chr3.1:75451669-75451688 None:intergenic 10.0%
!!! CTATTTATTTTCATAAAAAA+AGG + chr3.1:75452615-75452634 None:intergenic 10.0%
!!! TATCACATTTTTAAAAAAAT+TGG + chr3.1:75451670-75451689 None:intergenic 10.0%
!!! TTTTGTTTATTTACATTATT+AGG - chr3.1:75451911-75451930 MS.gene049378:intron 10.0%
!! ATCTAAATCTAATGATTTAA+TGG - chr3.1:75450165-75450184 MS.gene049378:CDS 15.0%
!! TAAATTAATGTACTAAAAAG+AGG + chr3.1:75451472-75451491 None:intergenic 15.0%
!!! AAAAATAATTGGTTTTCTTA+GGG + chr3.1:75451165-75451184 None:intergenic 15.0%
!!! AAATTTTTCACAAATGAATA+TGG - chr3.1:75452736-75452755 MS.gene049378:intron 15.0%
!!! TCACATTTTTAAAAAAATTG+GGG + chr3.1:75451668-75451687 None:intergenic 15.0%
!! GAAATTATTATCATTTGAAG+TGG + chr3.1:75451639-75451658 None:intergenic 20.0%
!! TATAATTCATACCTGAAATT+AGG + chr3.1:75451246-75451265 None:intergenic 20.0%
!!! AGAAAGACATATTTTGAAAT+TGG - chr3.1:75450644-75450663 MS.gene049378:intron 20.0%
!!! ATAGAAGTATAGAACTATAA+AGG - chr3.1:75450416-75450435 MS.gene049378:intron 20.0%
!!! GAAAAATAATTGGTTTTCTT+AGG + chr3.1:75451166-75451185 None:intergenic 20.0%
!!! TATAGTTTTCGAGTTTATAA+AGG - chr3.1:75450617-75450636 MS.gene049378:intron 20.0%
!!! TTGACTGTTTTATATAACAA+AGG + chr3.1:75452463-75452482 None:intergenic 20.0%
!!! TTTTAAAAAAATTGGGGAAA+GGG + chr3.1:75451662-75451681 None:intergenic 20.0%
!!! TTTTTAAAAAAATTGGGGAA+AGG + chr3.1:75451663-75451682 None:intergenic 20.0%
! AAACAAGATACTATTGGAAT+GGG + chr3.1:75450794-75450813 None:intergenic 25.0%
! AATAAGCTGAAAACAACTTA+AGG + chr3.1:75452367-75452386 None:intergenic 25.0%
! AATTGAATTCACAAAGAAAG+TGG + chr3.1:75450289-75450308 None:intergenic 25.0%
! ACTAAATATGTTTGTAGCTT+AGG - chr3.1:75451703-75451722 MS.gene049378:CDS 25.0%
! AGAAAAGACACTATAAATCA+GGG - chr3.1:75452250-75452269 MS.gene049378:intron 25.0%
! ATAACTGACAATTTGATTGT+GGG - chr3.1:75451271-75451290 MS.gene049378:intron 25.0%
! ATATATTCTAAACTTGCAAC+AGG - chr3.1:75451351-75451370 MS.gene049378:intron 25.0%
! GTCTTTATACACTAAAATTG+TGG - chr3.1:75450680-75450699 MS.gene049378:intron 25.0%
! TAAGTTATATATCCCATACA+GGG - chr3.1:75452676-75452695 MS.gene049378:intron 25.0%
! TAATTCAATCAAGAACAAGT+AGG + chr3.1:75451882-75451901 None:intergenic 25.0%
! TAGAAAAGACACTATAAATC+AGG - chr3.1:75452249-75452268 MS.gene049378:intron 25.0%
! TATAACTGACAATTTGATTG+TGG - chr3.1:75451270-75451289 MS.gene049378:intron 25.0%
! TTAAGTTATATATCCCATAC+AGG - chr3.1:75452675-75452694 MS.gene049378:intron 25.0%
! TTAGCTGTGCAAAAAATAAA+AGG + chr3.1:75452762-75452781 None:intergenic 25.0%
! TTATCCAAACAAGATACTAT+TGG + chr3.1:75450800-75450819 None:intergenic 25.0%
! TTTAAAAAAATTGGGGAAAG+GGG + chr3.1:75451661-75451680 None:intergenic 25.0%
!! ACTTTTACAATTCATGTGAA+TGG - chr3.1:75451139-75451158 MS.gene049378:intron 25.0%
!! CTTTTAAATTTAAACCGGAA+GGG - chr3.1:75450514-75450533 MS.gene049378:intron 25.0%
!! TCTCCATTTCTTTTCAAAAT+TGG + chr3.1:75450585-75450604 None:intergenic 25.0%
!! TGTGCCTTTTAAATTTAAAC+CGG - chr3.1:75450509-75450528 MS.gene049378:intron 25.0%
!! TTAGGTTGTATTAGGAAATA+GGG - chr3.1:75451721-75451740 MS.gene049378:CDS 25.0%
!!! TGTTTTTTGATTCAAAGACA+AGG + chr3.1:75452125-75452144 None:intergenic 25.0%
AACCACTTGTGTAAAAAAAC+AGG - chr3.1:75452507-75452526 MS.gene049378:intron 30.0%
AACTTGAAATTAGACACATG+AGG - chr3.1:75451431-75451450 MS.gene049378:intron 30.0%
AAGAAAGTGGCAAAACAAAT+AGG + chr3.1:75450276-75450295 None:intergenic 30.0%
ACCACTTGTGTAAAAAAACA+GGG - chr3.1:75452508-75452527 MS.gene049378:intron 30.0%
AGATTGTTTGGAAGAGTTTA+TGG - chr3.1:75452323-75452342 MS.gene049378:intron 30.0%
AGATTTAGATCACCTTAAGA+AGG - chr3.1:75451315-75451334 MS.gene049378:intron 30.0%
ATAGGAATGAATGCAATTGT+TGG - chr3.1:75450357-75450376 MS.gene049378:intron 30.0%
ATTTGGCTAAAAATGATCCA+TGG - chr3.1:75452857-75452876 MS.gene049378:CDS 30.0%
CAAACAAGATACTATTGGAA+TGG + chr3.1:75450795-75450814 None:intergenic 30.0%
CAAATTTATAGTTCAAGTCC+TGG - chr3.1:75452480-75452499 MS.gene049378:intron 30.0%
CAATTTATATGCACACTTCA+AGG - chr3.1:75451764-75451783 MS.gene049378:CDS 30.0%
CATTCCAATAGTATCTTGTT+TGG - chr3.1:75450793-75450812 MS.gene049378:intron 30.0%
CCAAATAAAAGAGCAATACA+AGG - chr3.1:75452823-75452842 MS.gene049378:intron 30.0%
CCTTCCGGTTTAAATTTAAA+AGG + chr3.1:75450516-75450535 None:intergenic 30.0%
CTAGATTATCACATAATGCA+TGG + chr3.1:75451510-75451529 None:intergenic 30.0%
CTCACTTCTATAAACTATCT+CGG + chr3.1:75450960-75450979 None:intergenic 30.0%
CTTGAAACTATTTCAAGAGT+CGG + chr3.1:75451843-75451862 None:intergenic 30.0%
CTTGAAGTGTGCATATAAAT+TGG + chr3.1:75451766-75451785 None:intergenic 30.0%
GTTACTGTTGCATTAGATTT+AGG - chr3.1:75450379-75450398 MS.gene049378:intron 30.0%
TAACTGACAATTTGATTGTG+GGG - chr3.1:75451272-75451291 MS.gene049378:intron 30.0%
TAATCACTTGTGAGATTGTT+TGG - chr3.1:75452311-75452330 MS.gene049378:intron 30.0%
TATGAATACTCTTGAGAGAT+AGG - chr3.1:75450339-75450358 MS.gene049378:intron 30.0%
TCGTATAAGCAAATCAAAAC+AGG + chr3.1:75452276-75452295 None:intergenic 30.0%
TGACAATTGCTTATTTGTTC+TGG - chr3.1:75452066-75452085 MS.gene049378:intron 30.0%
TTAAGGTGATCTAAATCTTC+AGG + chr3.1:75451313-75451332 None:intergenic 30.0%
TTGTGTAAAAAAACAGGGTA+AGG - chr3.1:75452513-75452532 MS.gene049378:intron 30.0%
TTGTTGTACACTATCAGAAA+GGG - chr3.1:75450111-75450130 MS.gene049378:CDS 30.0%
! AAGCTATAAGTTGCTTTCAT+AGG - chr3.1:75450930-75450949 MS.gene049378:intron 30.0%
! CCTTGTATTGCTCTTTTATT+TGG + chr3.1:75452826-75452845 None:intergenic 30.0%
! CCTTTTAAATTTAAACCGGA+AGG - chr3.1:75450513-75450532 MS.gene049378:intron 30.0%
! CTTAGGTTGTATTAGGAAAT+AGG - chr3.1:75451720-75451739 MS.gene049378:CDS 30.0%
! TGAAATGTTAGCTTAACAGT+AGG - chr3.1:75451540-75451559 MS.gene049378:intron 30.0%
! TTTGTAGCTTAGGTTGTATT+AGG - chr3.1:75451713-75451732 MS.gene049378:CDS 30.0%
! TTTGTTGTACACTATCAGAA+AGG - chr3.1:75450110-75450129 MS.gene049378:CDS 30.0%
!! CTTTGAAGTTAGCATATCAT+AGG + chr3.1:75452791-75452810 None:intergenic 30.0%
!! GCACCAATTTTGAAAAGAAA+TGG - chr3.1:75450579-75450598 MS.gene049378:intron 30.0%
!!! TGTTTTGATTTGCTTATACG+AGG - chr3.1:75452275-75452294 MS.gene049378:intron 30.0%
AAATAAGCAATTGTCACTGC+TGG + chr3.1:75452062-75452081 None:intergenic 35.0%
ACAAGGAGCAACTTATGATT+TGG - chr3.1:75452840-75452859 MS.gene049378:CDS 35.0%
ACCAAATGCAATGAAGGAAA+AGG + chr3.1:75450454-75450473 None:intergenic 35.0%
ACTGTTGCATTAGATTTAGG+TGG - chr3.1:75450382-75450401 MS.gene049378:intron 35.0%
AGATCGTGATGATACTCATA+AGG + chr3.1:75450229-75450248 None:intergenic 35.0%
CTTCTATAAACTATCTCGGA+TGG + chr3.1:75450956-75450975 None:intergenic 35.0%
GAACTATCATTGAGAGCTTA+TGG + chr3.1:75452391-75452410 None:intergenic 35.0%
GATCGTGATGATACTCATAA+GGG + chr3.1:75450228-75450247 None:intergenic 35.0%
TAGCTATGAAGAAGATGATG+AGG - chr3.1:75450200-75450219 MS.gene049378:CDS 35.0%
TATCAGTGATGCCTAATTTC+AGG - chr3.1:75451232-75451251 MS.gene049378:intron 35.0%
TATGAGTATCATCACGATCT+GGG - chr3.1:75450229-75450248 MS.gene049378:CDS 35.0%
TATTGTTGCACAAAACCTCT+TGG - chr3.1:75452182-75452201 MS.gene049378:intron 35.0%
TCTAAACTTGCAACAGGATA+AGG - chr3.1:75451357-75451376 MS.gene049378:intron 35.0%
TGTTGTACACTATCAGAAAG+GGG - chr3.1:75450112-75450131 MS.gene049378:CDS 35.0%
TTAGAATGGGCAATTTCTGA+GGG - chr3.1:75451990-75452009 MS.gene049378:intron 35.0%
TTATGAGTATCATCACGATC+TGG - chr3.1:75450228-75450247 MS.gene049378:CDS 35.0%
TTGATTCAAAGACAAGGTGA+GGG + chr3.1:75452119-75452138 None:intergenic 35.0%
TTTGAATCCATGTCAGATTG+AGG + chr3.1:75452702-75452721 None:intergenic 35.0%
TTTGATTCAAAGACAAGGTG+AGG + chr3.1:75452120-75452139 None:intergenic 35.0%
TTTGGTGGAAACAACTAACA+AGG - chr3.1:75452205-75452224 MS.gene049378:intron 35.0%
! ATCATTTGAAGTGGCACTAA+GGG + chr3.1:75451630-75451649 None:intergenic 35.0%
! CTAAAAAGAGGTTTGCTTAC+AGG + chr3.1:75451460-75451479 None:intergenic 35.0%
! TATCATTTGAAGTGGCACTA+AGG + chr3.1:75451631-75451650 None:intergenic 35.0%
! TCCTTTTCCTTCATTGCATT+TGG - chr3.1:75450450-75450469 MS.gene049378:intron 35.0%
! TCTAAATCTTCAGGTTTCTG+TGG + chr3.1:75451304-75451323 None:intergenic 35.0%
!! TTGCACTTTAGGATCTGTTT+GGG + chr3.1:75451066-75451085 None:intergenic 35.0%
!! TTTGCACTTTAGGATCTGTT+TGG + chr3.1:75451067-75451086 None:intergenic 35.0%
!! TTTTGGGGATATAGCAGATT+GGG - chr3.1:75452912-75452931 MS.gene049378:CDS 35.0%
!!! ACCCTGTTTTTTTACACAAG+TGG + chr3.1:75452512-75452531 None:intergenic 35.0%
AAGCAGTGTCATCCTTAGAA+TGG - chr3.1:75451976-75451995 MS.gene049378:intron 40.0%
ACACAGACCAAATGCAATGA+AGG + chr3.1:75450460-75450479 None:intergenic 40.0%
ACGTACAATACACCAAATGG+TGG - chr3.1:75452538-75452557 MS.gene049378:intron 40.0%
AGATTTAGATACCCTCTTGC+TGG + chr3.1:75450155-75450174 None:intergenic 40.0%
AGCAGTGTCATCCTTAGAAT+GGG - chr3.1:75451977-75451996 MS.gene049378:intron 40.0%
CAGCACAAAGTTTGCACTTT+AGG + chr3.1:75451077-75451096 None:intergenic 40.0%
CAGCTTATGACAAAAGCTGA+TGG - chr3.1:75450987-75451006 MS.gene049378:CDS 40.0%
CGTACAATACACCAAATGGT+GGG - chr3.1:75452539-75452558 MS.gene049378:intron 40.0%
CTAACTTCAAAGAGACCTTG+TGG - chr3.1:75452799-75452818 MS.gene049378:intron 40.0%
CTCAGAAATTGCCCATTCTA+AGG + chr3.1:75451991-75452010 None:intergenic 40.0%
CTCTACCACTGAACATAACA+GGG + chr3.1:75450756-75450775 None:intergenic 40.0%
CTCTGGCGTTGTAATTTCTA+GGG - chr3.1:75451566-75451585 MS.gene049378:intron 40.0%
CTTAGAATGGGCAATTTCTG+AGG - chr3.1:75451989-75452008 MS.gene049378:intron 40.0%
GATACTATTGGAATGGGAAG+TGG + chr3.1:75450788-75450807 None:intergenic 40.0%
GATCACCTTAAGAAGGAAGA+AGG - chr3.1:75451322-75451341 MS.gene049378:intron 40.0%
GCTACGTACAATACACCAAA+TGG - chr3.1:75452535-75452554 MS.gene049378:intron 40.0%
GGCTAAAAATGATCCATGGA+AGG - chr3.1:75452861-75452880 MS.gene049378:CDS 40.0%
GTTGTACACTATCAGAAAGG+GGG - chr3.1:75450113-75450132 MS.gene049378:CDS 40.0%
TCTAAGGATGACACTGCTTT+AGG + chr3.1:75451975-75451994 None:intergenic 40.0%
TCTACCACTGAACATAACAG+GGG + chr3.1:75450755-75450774 None:intergenic 40.0%
TCTCTACCACTGAACATAAC+AGG + chr3.1:75450757-75450776 None:intergenic 40.0%
TCTCTGGCGTTGTAATTTCT+AGG - chr3.1:75451565-75451584 MS.gene049378:intron 40.0%
TTGCACAAAACCTCTTGGTT+TGG - chr3.1:75452187-75452206 MS.gene049378:intron 40.0%
TTTCTACTCTTAGCAGCTCA+AGG + chr3.1:75452235-75452254 None:intergenic 40.0%
! AATCTTCAGGTTTCTGTGGT+TGG + chr3.1:75451300-75451319 None:intergenic 40.0%
! AGGATAAGGATGCTGAGTTT+TGG - chr3.1:75451371-75451390 MS.gene049378:intron 40.0%
! ATCTTCAGGTTTCTGTGGTT+GGG + chr3.1:75451299-75451318 None:intergenic 40.0%
! GATAAGGATGCTGAGTTTTG+GGG - chr3.1:75451373-75451392 MS.gene049378:intron 40.0%
! GGATAAGGATGCTGAGTTTT+GGG - chr3.1:75451372-75451391 MS.gene049378:intron 40.0%
! GGTGCTTTTCAGAAATGAAG+AGG + chr3.1:75450564-75450583 None:intergenic 40.0%
! TTACACAAGTGGTTGTTTCC+AGG + chr3.1:75452501-75452520 None:intergenic 40.0%
!! CTTTTGGGGATATAGCAGAT+TGG - chr3.1:75452911-75452930 MS.gene049378:CDS 40.0%
!! GCTCTTTTATTTGGTCCACA+AGG + chr3.1:75452817-75452836 None:intergenic 40.0%
AAGAGAATCCTACCAGCAAG+AGG - chr3.1:75450140-75450159 MS.gene049378:CDS 45.0%
ACAGAATCCAAAACACGTCG+AGG - chr3.1:75451589-75451608 MS.gene049378:intron 45.0%
AGAGAATCCTACCAGCAAGA+GGG - chr3.1:75450141-75450160 MS.gene049378:CDS 45.0%
AGCTTAACAGTAGGAGTCTC+TGG - chr3.1:75451549-75451568 MS.gene049378:intron 45.0%
AGTGCACTTCGCAAAGAGTT+TGG + chr3.1:75451951-75451970 None:intergenic 45.0%
CCACACCTTCTTCCTTCTTA+AGG + chr3.1:75451330-75451349 None:intergenic 45.0%
CCTTAAGAAGGAAGAAGGTG+TGG - chr3.1:75451327-75451346 MS.gene049378:intron 45.0%
CGTCGAGGACGATTGTAAAA+TGG - chr3.1:75451604-75451623 MS.gene049378:intron 45.0%
CTGCTATATCCCCAAAAGCA+TGG + chr3.1:75452909-75452928 None:intergenic 45.0%
GAAGAGGATCTCTACTCCTT+CGG + chr3.1:75450548-75450567 None:intergenic 45.0%
GTTTATGTGCACTGTACTGC+AGG - chr3.1:75452023-75452042 MS.gene049378:intron 45.0%
TCTACCCCTGTTATGTTCAG+TGG - chr3.1:75450748-75450767 MS.gene049378:intron 45.0%
TGGTCTGGAAGACTCTCAAA+TGG + chr3.1:75452889-75452908 None:intergenic 45.0%
TTAGATACCCTCTTGCTGGT+AGG + chr3.1:75450151-75450170 None:intergenic 45.0%
! AGTCTTCCAGACCATGCTTT+TGG - chr3.1:75452895-75452914 MS.gene049378:CDS 45.0%
! ATATCCCCAAAAGCATGGTC+TGG + chr3.1:75452904-75452923 None:intergenic 45.0%
! GTCTTCCAGACCATGCTTTT+GGG - chr3.1:75452896-75452915 MS.gene049378:CDS 45.0%
! GTTGTTTCCACCAAACCAAG+AGG + chr3.1:75452200-75452219 None:intergenic 45.0%
! TCTTCCAGACCATGCTTTTG+GGG - chr3.1:75452897-75452916 MS.gene049378:CDS 45.0%
! TGGGCAATTTCTGAGGGAAA+AGG - chr3.1:75451996-75452015 MS.gene049378:intron 45.0%
!! CACAAAACCTCTTGGTTTGG+TGG - chr3.1:75452190-75452209 MS.gene049378:intron 45.0%
!!! TATTTATTTTCATAAAAAAA+GGG + chr3.1:75452614-75452633 None:intergenic 5.0%
CTCTCAAATGGCTCCTTCCA+TGG + chr3.1:75452877-75452896 None:intergenic 50.0%
GGGATATAGCAGATTGGGAG+AGG - chr3.1:75452917-75452936 MS.gene049378:CDS 50.0%
GTCAGATTGAGGCCCTGTAT+GGG + chr3.1:75452691-75452710 None:intergenic 50.0%
TACAGGGCCTCAATCTGACA+TGG - chr3.1:75452692-75452711 MS.gene049378:intron 50.0%
TGTCAGATTGAGGCCCTGTA+TGG + chr3.1:75452692-75452711 None:intergenic 50.0%
! CAATCGTCCTCGACGTGTTT+TGG + chr3.1:75451599-75451618 None:intergenic 50.0%
!! TTTAAACCGGAAGGGTGCTG+TGG - chr3.1:75450522-75450541 MS.gene049378:intron 50.0%
ACTAAAGCTCCCGCATACGC+AGG + chr3.1:75452580-75452599 None:intergenic 55.0%
ATACGCAGGGGTCTAGGAAG+GGG + chr3.1:75452566-75452585 None:intergenic 55.0%
CATACGCAGGGGTCTAGGAA+GGG + chr3.1:75452567-75452586 None:intergenic 55.0%
CTAAAGCTCCCGCATACGCA+GGG + chr3.1:75452579-75452598 None:intergenic 55.0%
GTGCACTGTACTGCAGGACT+TGG - chr3.1:75452029-75452048 MS.gene049378:intron 55.0%
TAAAGCTCCCGCATACGCAG+GGG + chr3.1:75452578-75452597 None:intergenic 55.0%
TAGGAAGGGGTCCCACCATT+TGG + chr3.1:75452553-75452572 None:intergenic 55.0%
TTCCTAGACCCCTGCGTATG+CGG - chr3.1:75452567-75452586 MS.gene049378:intron 55.0%
! ATGCGGGAGCTTTAGTGCAC+TGG - chr3.1:75452584-75452603 MS.gene049378:intron 55.0%
!!! CGCGGACACGGTTTTGAATC+AGG + chr3.1:75452945-75452964 None:intergenic 55.0%
GCATACGCAGGGGTCTAGGA+AGG + chr3.1:75452568-75452587 None:intergenic 60.0%
TCCTAGACCCCTGCGTATGC+GGG - chr3.1:75452568-75452587 MS.gene049378:intron 60.0%
! TTCCACGAAGAGCGCGGACA+CGG + chr3.1:75452957-75452976 None:intergenic 60.0%
AACCGTGTCCGCGCTCTTCG+TGG - chr3.1:75452952-75452971 MS.gene049378:CDS 65.0%
CTTCGGCCACAGCACCCTTC+CGG + chr3.1:75450531-75450550 None:intergenic 65.0%
TCCCGCATACGCAGGGGTCT+AGG + chr3.1:75452572-75452591 None:intergenic 65.0%
!! CGGAAGGGTGCTGTGGCCGA+AGG - chr3.1:75450529-75450548 MS.gene049378:intron 70.0%


Chromosome Type Strat End Strand Name
chr3.1 gene 75450100 75452981 75450100 ID=MS.gene049378
chr3.1 mRNA 75450100 75452981 75450100 ID=MS.gene049378.t1;Parent=MS.gene049378
chr3.1 exon 75452831 75452981 75452831 ID=MS.gene049378.t1.exon1;Parent=MS.gene049378.t1
chr3.1 CDS 75452831 75452981 75452831 ID=cds.MS.gene049378.t1;Parent=MS.gene049378.t1
chr3.1 exon 75451622 75451827 75451622 ID=MS.gene049378.t1.exon2;Parent=MS.gene049378.t1
chr3.1 CDS 75451622 75451827 75451622 ID=cds.MS.gene049378.t1;Parent=MS.gene049378.t1
chr3.1 exon 75450978 75451148 75450978 ID=MS.gene049378.t1.exon3;Parent=MS.gene049378.t1
chr3.1 CDS 75450978 75451148 75450978 ID=cds.MS.gene049378.t1;Parent=MS.gene049378.t1
chr3.1 exon 75450100 75450303 75450100 ID=MS.gene049378.t1.exon4;Parent=MS.gene049378.t1
chr3.1 CDS 75450100 75450303 75450100 ID=cds.MS.gene049378.t1;Parent=MS.gene049378.t1
Gene Sequence

>MS.gene049378

ATGAACAAAATTTGTTGTACACTATCAGAAAGGGGGATTGAAGAGAATCCTACCAGCAAGAGGGTATCTAAATCTAATGATTTAATGGAAGAATACAATATAGCTATGAAGAAGATGATGAGGAACCCTTATGAGTATCATCACGATCTGGGTCAGTTTCATCTCTCTCTGCACCTATTTGTTTTGCCACTTTCTTTGTGAATTCAATTGCTTCTTTGAATGTTTGATATGATTATCAATATGAATACTCTTGAGAGATAGGAATGAATGCAATTGTTGGTTACTGTTGCATTAGATTTAGGTGGTGCTTGATAGAATAGAAGTATAGAACTATAAAGGTGTCATTTTTTTCCTTTTCCTTCATTGCATTTGGTCTGTGTTGATTAATCTTCAACTATTGTATTGAGTATGTGCCTTTTAAATTTAAACCGGAAGGGTGCTGTGGCCGAAGGAGTAGAGATCCTCTTCATTTCTGAAAAGCACCAATTTTGAAAAGAAATGGAGAGATTCGATGCTATATAGTTTTCGAGTTTATAAAGGATGTAGAAAGACATATTTTGAAATTGGTAACATTAATCGAGTCTTTATACACTAAAATTGTGGTAATGCAAGTATCGATTTCTTTTAAGAAATTGAGAGAATCTCTTCTCTACCCCTGTTATGTTCAGTGGTAGAGATTCTGTGTCCACTTCCCATTCCAATAGTATCTTGTTTGGATAAACAACTTAATTTAGTGTTTATAGCATAAACGTTTATCATACAAATGTTTATGTATAATAATAAGCTATTTCTATAACAAAAGATAAACTAAAATAAAGCAATTTTCATATAAGCTATAAGTTGCTTTCATAGGCCATCCGAGATAGTTTATAGAAGTGAGCTGAAAACAGCTTATGACAAAAGCTGATGGAAATAAGTTGAAAAGAACGTAAGAACGTGTTATAAGTTGTTTTCAATAGCACTCCCAAACAGATCCTAAAGTGCAAACTTTGTGCTGTATGTTGCTTCATAAAGTTTGATTTTAATTACTAAGCACTTTACTTTTACAATTCATGTGAATGGCCCTAAGAAAACCAATTATTTTTCATTAATTGTTGATTTATTTATACATAGTACGTCACTCAACTGATACTATCAGTGATGCCTAATTTCAGGTATGAATTATACAGTTATAACTGACAATTTGATTGTGGGGTCCCAACCACAGAAACCTGAAGATTTAGATCACCTTAAGAAGGAAGAAGGTGTGGCATATATTCTAAACTTGCAACAGGATAAGGATGCTGAGTTTTGGGGAATAGACTTGCAGTCAATAGTAAAAAAGTGTCGTGAACTTGAAATTAGACACATGAGGAGACCTGTAAGCAAACCTCTTTTTAGTACATTAATTTAGAATATACAAAACTTCCATGCATTATGTGATAATCTAGACATTGTTCATGAAATGTTAGCTTAACAGTAGGAGTCTCTGGCGTTGTAATTTCTAGGGACAGAATCCAAAACACGTCGAGGACGATTGTAAAATGGCCCTTAGTGCCACTTCAAATGATAATAATTTCCCCTTTCCCCAATTTTTTTAAAAATGTGATAATCTAGACAACATACTAAATATGTTTGTAGCTTAGGTTGTATTAGGAAATAGGGCTTTGAGCTGTCATGTTTACCAATTTATATGCACACTTCAAGGATCAATATACTTTTACTGCAACTTTGACAAAATAACATGTCAGAAAAGTTATTCCGACTCTTGAAATAGTTTCAAGTTCGCTGAATCTGTTGCCTACTTGTTCTTGATTGAATTATCATTTACATTTTGTTTATTTACATTATTAGGCAGTAGACTTTGATCCAAACTCTTTGCGAAGTGCACTACCTAAAGCAGTGTCATCCTTAGAATGGGCAATTTCTGAGGGAAAAGGAAGAGTTTATGTGCACTGTACTGCAGGACTTGGAAGAGCTCCAGCAGTGACAATTGCTTATTTGTTCTGGTTTTGTGACATGAATGTAAGTCTTAAACCCTCACCTTGTCTTTGAATCAAAAAACAATTTTCATGTAACTTATTTAACATTTCATATGAGTATTATTGTTGCACAAAACCTCTTGGTTTGGTGGAAACAACTAACAAGGTTTTCCTTGAGCTGCTAAGAGTAGAAAAGACACTATAAATCAGGGCCTGTTTTGATTTGCTTATACGAGGTTATCTATTGACATAATCACTTGTGAGATTGTTTGGAAGAGTTTATGGAAACAACTTATGACATGTCCTTAAGTTGTTTTCAGCTTATTTCCATAAGCTCTCAATGATAGTTCATGAAAACAACTTGTAAGCTTATATAAAAACAGTCAAAATTTATTTTATCCTTTGTTATATAAAACAGTCAAATTTATAGTTCAAGTCCTGGAAACAACCACTTGTGTAAAAAAACAGGGTAAGGCTACGTACAATACACCAAATGGTGGGACCCCTTCCTAGACCCCTGCGTATGCGGGAGCTTTAGTGCACTGGATTGCCCTTTTTTTATGAAAATAAATAGTTTATATATATAAGCACTTATATAGTTCAGTTAGCGCTTATTAAGTTATATATCCCATACAGGGCCTCAATCTGACATGGATTCAAATTTCTTTAAGTGCTAAATTTTTCACAAATGAATATGGCCTTTTATTTTTTGCACAGCTAAATGAAGCCTATGATATGCTAACTTCAAAGAGACCTTGTGGACCAAATAAAAGAGCAATACAAGGAGCAACTTATGATTTGGCTAAAAATGATCCATGGAAGGAGCCATTTGAGAGTCTTCCAGACCATGCTTTTGGGGATATAGCAGATTGGGAGAGGAACCTGATTCAAAACCGTGTCCGCGCTCTTCGTGGAACCTGA

Protein sequence

>MS.gene049378.t1

MNKICCTLSERGIEENPTSKRVSKSNDLMEEYNIAMKKMMRNPYEYHHDLGMNYTVITDNLIVGSQPQKPEDLDHLKKEEGVAYILNLQQDKDAEFWGIDLQSIVKKCRELEIRHMRRPAVDFDPNSLRSALPKAVSSLEWAISEGKGRVYVHCTAGLGRAPAVTIAYLFWFCDMNLNEAYDMLTSKRPCGPNKRAIQGATYDLAKNDPWKEPFESLPDHAFGDIADWERNLIQNRVRALRGT