Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77042.t1 | XP_013455181.1 | 90.2 | 215 | 21 | 0 | 1 | 215 | 1 | 215 | 3.20E-109 | 404.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77042.t1 | P07602 | 35.0 | 100 | 59 | 3 | 14 | 109 | 43 | 140 | 4.2e-09 | 63.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77042.t1 | A0A072UHH9 | 90.2 | 215 | 21 | 0 | 1 | 215 | 1 | 215 | 2.3e-109 | 404.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene77042 | MS.gene68850 | PPI |
| MS.gene02356 | MS.gene77042 | PPI |
| MS.gene68947 | MS.gene77042 | PPI |
| MS.gene77042 | MS.gene002990 | PPI |
| MS.gene012660 | MS.gene77042 | PPI |
| MS.gene27206 | MS.gene77042 | PPI |
| MS.gene042166 | MS.gene77042 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77042.t1 | MTR_4g029040 | 90.233 | 215 | 21 | 0 | 1 | 215 | 1 | 215 | 4.56e-145 | 403 |
| MS.gene77042.t1 | MTR_7g072560 | 49.107 | 224 | 102 | 2 | 1 | 212 | 1 | 224 | 1.71e-78 | 235 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77042.t1 | AT3G51730 | 43.719 | 199 | 107 | 2 | 1 | 194 | 1 | 199 | 8.05e-57 | 179 |
| MS.gene77042.t1 | AT5G01800 | 38.624 | 189 | 104 | 3 | 16 | 195 | 15 | 200 | 2.25e-51 | 166 |
Find 40 sgRNAs with CRISPR-Local
Find 205 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGATACCGTTGCGGAATTAT+TGG | 0.223574 | 4.3:+70585760 | MS.gene77042:CDS |
| GAGATTATGGAAAGCAAAAT+AGG | 0.235192 | 4.3:+70583826 | None:intergenic |
| CTTCCATGATTGCAGTTTCC+TGG | 0.269689 | 4.3:-70587029 | None:intergenic |
| ACTAAAGGCATGCAATAATA+TGG | 0.295458 | 4.3:+70585982 | MS.gene77042:CDS |
| TGCATATATCTGCTGTCTTC+AGG | 0.324490 | 4.3:-70586969 | None:intergenic |
| AAATCACTAACCTTAGTTTC+AGG | 0.327947 | 4.3:-70585797 | None:intergenic |
| GTTGAATGATCCTGAAACTA+AGG | 0.370785 | 4.3:+70585787 | MS.gene77042:CDS |
| TCACAAATTGAACACGCATT+TGG | 0.400191 | 4.3:-70585135 | None:intergenic |
| TTCTTCCACTATTGTTAGCC+AGG | 0.411455 | 4.3:+70587011 | MS.gene77042:CDS |
| AAGATTTCTTCACAGGTTCA+TGG | 0.418003 | 4.3:+70585716 | MS.gene77042:CDS |
| CATTGTACAGTGCTTTGAAT+TGG | 0.437748 | 4.3:+70585604 | MS.gene77042:intron |
| GTCTGCAAAGATTTCTTCAC+AGG | 0.444344 | 4.3:+70585709 | MS.gene77042:CDS |
| AGATTATGGAAAGCAAAATA+GGG | 0.475417 | 4.3:+70583827 | None:intergenic |
| AGTTTCCTGGCTAACAATAG+TGG | 0.478296 | 4.3:-70587016 | None:intergenic |
| TAGCCAGGAAACTGCAATCA+TGG | 0.491121 | 4.3:+70587026 | MS.gene77042:CDS |
| TGTACAGTGCTTTGAATTGG+TGG | 0.491267 | 4.3:+70585607 | MS.gene77042:intron |
| AAAATAGCTCTAATGAAGCC+TGG | 0.494193 | 4.3:+70585656 | MS.gene77042:CDS |
| AACAATAGTGGAAGAAGGGC+AGG | 0.499361 | 4.3:-70587004 | None:intergenic |
| TCTGCATTGACTAGAATCAA+TGG | 0.518668 | 4.3:-70586940 | None:intergenic |
| TCTTCCGTCTTTCAACGAGC+AGG | 0.520321 | 4.3:+70585245 | MS.gene77042:CDS |
| TGAGATACTTGATTATCTAA+AGG | 0.525760 | 4.3:+70585170 | MS.gene77042:CDS |
| TTGTTTATTTACAGTGCAAG+AGG | 0.527287 | 4.3:+70586899 | MS.gene77042:intron |
| TGGCTAACAATAGTGGAAGA+AGG | 0.530354 | 4.3:-70587009 | None:intergenic |
| TAATATGGAGAAGTATAAGA+AGG | 0.539882 | 4.3:+70585997 | MS.gene77042:CDS |
| GATAATTCAGAAACTACTAA+AGG | 0.545272 | 4.3:+70585967 | MS.gene77042:CDS |
| GGCTAACAATAGTGGAAGAA+GGG | 0.565538 | 4.3:-70587008 | None:intergenic |
| CAGGTTCATGGAAATAGTTG+TGG | 0.583323 | 4.3:+70585728 | MS.gene77042:CDS |
| TCTTTGCAGACTCGCAAAGG+TGG | 0.584711 | 4.3:-70585697 | None:intergenic |
| GCAAGAGAGTTTGCAAACCC+TGG | 0.584783 | 4.3:+70583892 | MS.gene77042:CDS |
| AAATCTTTGCAGACTCGCAA+AGG | 0.587749 | 4.3:-70585700 | None:intergenic |
| TTATTTACAGTGCAAGAGGA+TGG | 0.587964 | 4.3:+70586903 | MS.gene77042:intron |
| TCTAAAGGATAACAAGACTC+AGG | 0.588548 | 4.3:+70585185 | MS.gene77042:CDS |
| TATGGAGAAGTATAAGAAGG+AGG | 0.591525 | 4.3:+70586000 | MS.gene77042:CDS |
| GAAAGACGGAAGATGACGGC+AGG | 0.600239 | 4.3:-70585235 | None:intergenic |
| CGTTGAAAGACGGAAGATGA+CGG | 0.615812 | 4.3:-70585239 | None:intergenic |
| CAAACCTGCTCGTTGAAAGA+CGG | 0.623702 | 4.3:-70585249 | None:intergenic |
| AAATGCGTGTTCAATTTGTG+AGG | 0.646128 | 4.3:+70585137 | MS.gene77042:CDS |
| CTCAACCAATAATTCCGCAA+CGG | 0.648292 | 4.3:-70585765 | None:intergenic |
| GATGACGGCAGGTATTGTGA+AGG | 0.680867 | 4.3:-70585224 | None:intergenic |
| GATTAAGAGTCAGAAAACAA+CGG | 0.712508 | 4.3:-70587057 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATAAAAAATTACTGACA+AGG | - | chr4.3:70586200-70586219 | None:intergenic | 15.0% |
| !! | AAATGACATTTAAGAATAAA+AGG | - | chr4.3:70586076-70586095 | None:intergenic | 15.0% |
| !! | AATGACATTTAAGAATAAAA+GGG | - | chr4.3:70586075-70586094 | None:intergenic | 15.0% |
| !! | ACTATATAAAAAATTAACCA+TGG | - | chr4.3:70584902-70584921 | None:intergenic | 15.0% |
| !! | ATAAACAAGAAAATAATTGT+TGG | + | chr4.3:70584053-70584072 | MS.gene77042:intron | 15.0% |
| !! | TAAAAAAAAGAGAAAACAAA+AGG | - | chr4.3:70586044-70586063 | None:intergenic | 15.0% |
| !! | TAATGAATTGAATAAGAATA+TGG | - | chr4.3:70586132-70586151 | None:intergenic | 15.0% |
| !!! | GGTTAATTTTTTATATAGTT+CGG | + | chr4.3:70584903-70584922 | MS.gene77042:intron | 15.0% |
| !! | AAAATAACTACTTTCTGAAT+TGG | + | chr4.3:70585879-70585898 | MS.gene77042:intron | 20.0% |
| !! | AAATGTACATGTGATATTAT+AGG | - | chr4.3:70585010-70585029 | None:intergenic | 20.0% |
| !! | AACAAGATCAGTTAAAAATA+AGG | - | chr4.3:70585570-70585589 | None:intergenic | 20.0% |
| !! | AACTTAATTTATGTAACCAA+AGG | - | chr4.3:70586109-70586128 | None:intergenic | 20.0% |
| !! | AATTTGGACTAATTAAATCA+AGG | - | chr4.3:70584515-70584534 | None:intergenic | 20.0% |
| !! | ATAGCTTATGAAAGTAAAAT+AGG | + | chr4.3:70586410-70586429 | MS.gene77042:intron | 20.0% |
| !! | ATGGTTTAATTGGTTAAAAT+AGG | - | chr4.3:70586720-70586739 | None:intergenic | 20.0% |
| !! | ATTTATGTAATCTTAGAAGA+TGG | + | chr4.3:70583988-70584007 | MS.gene77042:intron | 20.0% |
| !! | CAAATATTTATTCGTTGTAT+TGG | - | chr4.3:70586794-70586813 | None:intergenic | 20.0% |
| !! | TAATTAGTCCAAATTAAACT+CGG | + | chr4.3:70584520-70584539 | MS.gene77042:intron | 20.0% |
| !! | TATAAATTCGTTAAATTTGC+TGG | - | chr4.3:70585513-70585532 | None:intergenic | 20.0% |
| !! | TGTAAAGTACAAAGATTAAT+AGG | + | chr4.3:70584011-70584030 | MS.gene77042:intron | 20.0% |
| !!! | ACATTTTTTTAAAGGAAAAC+CGG | - | chr4.3:70584763-70584782 | None:intergenic | 20.0% |
| !!! | AGGTTTATCTTATTTTTCTT+TGG | - | chr4.3:70584634-70584653 | None:intergenic | 20.0% |
| !!! | ATTGAGCTTTGAATTTTAAT+CGG | + | chr4.3:70585427-70585446 | MS.gene77042:intron | 20.0% |
| !!! | ATTTTCTTGTTTATCATTGA+TGG | - | chr4.3:70584047-70584066 | None:intergenic | 20.0% |
| !!! | CTTTTATTTCTGATTTTGTT+GGG | + | chr4.3:70583850-70583869 | MS.gene77042:CDS | 20.0% |
| !!! | TAATTAAATCAAGGTTCTAA+GGG | - | chr4.3:70584506-70584525 | None:intergenic | 20.0% |
| ! | AAAATAGGCAACAAATAAAC+CGG | - | chr4.3:70586705-70586724 | None:intergenic | 25.0% |
| ! | AAATAAACTTCAAACCATCT+AGG | - | chr4.3:70583968-70583987 | None:intergenic | 25.0% |
| ! | AAGCTATTCATGATAGATTA+CGG | - | chr4.3:70586397-70586416 | None:intergenic | 25.0% |
| ! | ACCTTACTAATGAATGAAAA+TGG | - | chr4.3:70584590-70584609 | None:intergenic | 25.0% |
| ! | ATATCAATCCGAGTTTAATT+TGG | - | chr4.3:70584531-70584550 | None:intergenic | 25.0% |
| ! | ATTACAATGATTATCATGGA+AGG | + | chr4.3:70586167-70586186 | MS.gene77042:intron | 25.0% |
| ! | CGAATAAATATTTGCAGTTA+CGG | + | chr4.3:70586800-70586819 | MS.gene77042:intron | 25.0% |
| ! | CTAATTAAATCAAGGTTCTA+AGG | - | chr4.3:70584507-70584526 | None:intergenic | 25.0% |
| ! | CTTGATTACAATGATTATCA+TGG | + | chr4.3:70586163-70586182 | MS.gene77042:intron | 25.0% |
| ! | GATAATTCAGAAACTACTAA+AGG | + | chr4.3:70585967-70585986 | MS.gene77042:CDS | 25.0% |
| ! | TAACATAAGAAGTTGAGTTA+GGG | + | chr4.3:70584218-70584237 | MS.gene77042:intron | 25.0% |
| ! | TAATTCTGCATATGAAAGAT+AGG | - | chr4.3:70585106-70585125 | None:intergenic | 25.0% |
| ! | TATGAGTAATTTATCCTAGT+GGG | - | chr4.3:70586354-70586373 | None:intergenic | 25.0% |
| ! | TATTAAGGAAGGATAATGTA+CGG | - | chr4.3:70585828-70585847 | None:intergenic | 25.0% |
| ! | TGAGATACTTGATTATCTAA+AGG | + | chr4.3:70585170-70585189 | MS.gene77042:CDS | 25.0% |
| ! | TGTATCTTACGATTCATAAT+AGG | - | chr4.3:70585914-70585933 | None:intergenic | 25.0% |
| ! | TTAACATAAGAAGTTGAGTT+AGG | + | chr4.3:70584217-70584236 | MS.gene77042:intron | 25.0% |
| ! | TTAGATAGAATGAGTTTGAA+TGG | - | chr4.3:70584300-70584319 | None:intergenic | 25.0% |
| ! | TTATGAGTAATTTATCCTAG+TGG | - | chr4.3:70586355-70586374 | None:intergenic | 25.0% |
| ! | TTTATAGTGTAGAATTGTGA+AGG | + | chr4.3:70585527-70585546 | MS.gene77042:intron | 25.0% |
| !! | GAAGTTAACAAATTTTGCAT+TGG | - | chr4.3:70584951-70584970 | None:intergenic | 25.0% |
| !! | TAATATGGAGAAGTATAAGA+AGG | + | chr4.3:70585997-70586016 | MS.gene77042:CDS | 25.0% |
| !! | TAGATTACGGAAACAAATTT+TGG | - | chr4.3:70586384-70586403 | None:intergenic | 25.0% |
| !!! | AGAAAAGTGAGTCATTTTAT+TGG | - | chr4.3:70585329-70585348 | None:intergenic | 25.0% |
| !!! | GACAAGCTACATTTTTTTAA+AGG | - | chr4.3:70584771-70584790 | None:intergenic | 25.0% |
| !!! | GCTATTTTTGAGAAGAAAAT+CGG | - | chr4.3:70585644-70585663 | None:intergenic | 25.0% |
| !!! | GCTTTTATTTCTGATTTTGT+TGG | + | chr4.3:70583849-70583868 | MS.gene77042:CDS | 25.0% |
| !!! | GTATTGGTCAATGTTTTAAA+AGG | - | chr4.3:70586778-70586797 | None:intergenic | 25.0% |
| AAAAACTAAGCTGCTTATTC+AGG | - | chr4.3:70585402-70585421 | None:intergenic | 30.0% | |
| AAATCACTAACCTTAGTTTC+AGG | - | chr4.3:70585800-70585819 | None:intergenic | 30.0% | |
| AAGATAAACCTATTGAGAAG+AGG | + | chr4.3:70584643-70584662 | MS.gene77042:intron | 30.0% | |
| AGTAAAATAGGAACGACTTT+CGG | + | chr4.3:70586422-70586441 | MS.gene77042:intron | 30.0% | |
| AGTTAACTAGTTAAAGTTCC+AGG | - | chr4.3:70586288-70586307 | None:intergenic | 30.0% | |
| ATATAGTTCGGTTCATTTGA+TGG | + | chr4.3:70584915-70584934 | MS.gene77042:intron | 30.0% | |
| ATTTGCAAATTACACATGAG+AGG | - | chr4.3:70584253-70584272 | None:intergenic | 30.0% | |
| CAAGCGTTTATACTATAAGT+TGG | + | chr4.3:70586486-70586505 | MS.gene77042:intron | 30.0% | |
| CATTATCCTTCCTTAATATG+AGG | + | chr4.3:70585830-70585849 | MS.gene77042:intron | 30.0% | |
| GCATTCTAAACTAGCATATA+GGG | + | chr4.3:70584075-70584094 | MS.gene77042:intron | 30.0% | |
| GCTTAGGCCAATAATATATA+GGG | + | chr4.3:70584183-70584202 | MS.gene77042:intron | 30.0% | |
| GTTAACTAGTTAAAGTTCCA+GGG | - | chr4.3:70586287-70586306 | None:intergenic | 30.0% | |
| GTTATGAGAAACTGATAACA+TGG | - | chr4.3:70585380-70585399 | None:intergenic | 30.0% | |
| TAAACGCTTGTGCATATATT+AGG | - | chr4.3:70586476-70586495 | None:intergenic | 30.0% | |
| TATAGTTCGGTTCATTTGAT+GGG | + | chr4.3:70584916-70584935 | MS.gene77042:intron | 30.0% | |
| TTGTTTATTTACAGTGCAAG+AGG | + | chr4.3:70586899-70586918 | MS.gene77042:intron | 30.0% | |
| TTTCTCGCCCTATATATTAT+TGG | - | chr4.3:70584193-70584212 | None:intergenic | 30.0% | |
| TTTGCAAATTACACATGAGA+GGG | - | chr4.3:70584252-70584271 | None:intergenic | 30.0% | |
| ! | ACTAAAGGCATGCAATAATA+TGG | + | chr4.3:70585982-70586001 | MS.gene77042:CDS | 30.0% |
| ! | AGGCTAAAGTACTTAAGAAA+CGG | - | chr4.3:70584990-70585009 | None:intergenic | 30.0% |
| ! | TCATTTTGCATGAAATCCTT+TGG | + | chr4.3:70586090-70586109 | MS.gene77042:intron | 30.0% |
| ! | TGTTTCTATTCGAAAACACT+TGG | - | chr4.3:70584690-70584709 | None:intergenic | 30.0% |
| ! | TTCGGTCAGATTTAAAACAT+TGG | - | chr4.3:70586585-70586604 | None:intergenic | 30.0% |
| !! | GCCATTTTCATTCATTAGTA+AGG | + | chr4.3:70584586-70584605 | MS.gene77042:intron | 30.0% |
| !! | GTCATTTTATTGGATAAGGA+AGG | - | chr4.3:70585319-70585338 | None:intergenic | 30.0% |
| !! | GTGAGTCATTTTATTGGATA+AGG | - | chr4.3:70585323-70585342 | None:intergenic | 30.0% |
| !! | TCTTTTCTTTTTTGCCTAGA+TGG | + | chr4.3:70583951-70583970 | MS.gene77042:intron | 30.0% |
| !! | TTGCTTAGATTGATTTTCAG+AGG | + | chr4.3:70584854-70584873 | MS.gene77042:intron | 30.0% |
| !!! | ATGTTAGTTTTCTTCTTGCT+AGG | + | chr4.3:70586254-70586273 | MS.gene77042:intron | 30.0% |
| AAATGCGTGTTCAATTTGTG+AGG | + | chr4.3:70585137-70585156 | MS.gene77042:CDS | 35.0% | |
| AAGATTTCTTCACAGGTTCA+TGG | + | chr4.3:70585716-70585735 | MS.gene77042:CDS | 35.0% | |
| AATGCTCCTCATATTAAGGA+AGG | - | chr4.3:70585839-70585858 | None:intergenic | 35.0% | |
| ACAGTATCCAGGTTATATAC+AGG | - | chr4.3:70584797-70584816 | None:intergenic | 35.0% | |
| ACCCTGGTAATTAACAATGT+TGG | + | chr4.3:70583908-70583927 | MS.gene77042:intron | 35.0% | |
| AGCCAACATTGTTAATTACC+AGG | - | chr4.3:70583913-70583932 | None:intergenic | 35.0% | |
| ATACAAACCAGCGAATTTAC+TGG | - | chr4.3:70586608-70586627 | None:intergenic | 35.0% | |
| CAGAAGAAAGAATCAAGCAA+AGG | - | chr4.3:70585278-70585297 | None:intergenic | 35.0% | |
| CAGTATCCAGGTTATATACA+GGG | - | chr4.3:70584796-70584815 | None:intergenic | 35.0% | |
| CATAAGAACAGGTAACGTAT+CGG | - | chr4.3:70584724-70584743 | None:intergenic | 35.0% | |
| CGCTTAGGCCAATAATATAT+AGG | + | chr4.3:70584182-70584201 | MS.gene77042:intron | 35.0% | |
| CTCTAATGCTCCTCATATTA+AGG | - | chr4.3:70585843-70585862 | None:intergenic | 35.0% | |
| CTTCTGAGTCATGGTTTAAT+TGG | - | chr4.3:70586730-70586749 | None:intergenic | 35.0% | |
| CTTTGGCTACTTCACTTATT+TGG | - | chr4.3:70584617-70584636 | None:intergenic | 35.0% | |
| GCCAACATTGTTAATTACCA+GGG | - | chr4.3:70583912-70583931 | None:intergenic | 35.0% | |
| GGCATTCTAAACTAGCATAT+AGG | + | chr4.3:70584074-70584093 | MS.gene77042:intron | 35.0% | |
| GTGTTCAATTGTTCATTCCA+TGG | + | chr4.3:70584882-70584901 | MS.gene77042:intron | 35.0% | |
| GTTACCTGTTCTTATGTAGT+CGG | + | chr4.3:70584728-70584747 | MS.gene77042:intron | 35.0% | |
| GTTGAATGATCCTGAAACTA+AGG | + | chr4.3:70585787-70585806 | MS.gene77042:CDS | 35.0% | |
| TACAATCAGAAACAGTATCC+AGG | - | chr4.3:70584808-70584827 | None:intergenic | 35.0% | |
| TCACAAATTGAACACGCATT+TGG | - | chr4.3:70585138-70585157 | None:intergenic | 35.0% | |
| TCTAAAGGATAACAAGACTC+AGG | + | chr4.3:70585185-70585204 | MS.gene77042:CDS | 35.0% | |
| TCTGTTGAACTGGATTGAAT+CGG | + | chr4.3:70586648-70586667 | MS.gene77042:intron | 35.0% | |
| TGAAGGAATAAGAACTTAGC+AGG | + | chr4.3:70585544-70585563 | MS.gene77042:intron | 35.0% | |
| TTATTTACAGTGCAAGAGGA+TGG | + | chr4.3:70586903-70586922 | MS.gene77042:intron | 35.0% | |
| TTCTAAACTAGCATATAGGG+CGG | + | chr4.3:70584078-70584097 | MS.gene77042:intron | 35.0% | |
| ! | AAACGGGCTTAGATTTGAAA+GGG | - | chr4.3:70584973-70584992 | None:intergenic | 35.0% |
| ! | AGTAATTTATCCTAGTGGGT+GGG | - | chr4.3:70586350-70586369 | None:intergenic | 35.0% |
| ! | CATTGTACAGTGCTTTGAAT+TGG | + | chr4.3:70585604-70585623 | MS.gene77042:intron | 35.0% |
| ! | GGCTAAAGTACTTAAGAAAC+GGG | - | chr4.3:70584989-70585008 | None:intergenic | 35.0% |
| ! | TAGCGTAATGGTAAGGTTTT+TGG | - | chr4.3:70584476-70584495 | None:intergenic | 35.0% |
| ! | TATGGAGAAGTATAAGAAGG+AGG | + | chr4.3:70586000-70586019 | MS.gene77042:CDS | 35.0% |
| ! | TCGAAAACACTTGGACTTTT+TGG | - | chr4.3:70584681-70584700 | None:intergenic | 35.0% |
| !! | AAAATAGCTCTAATGAAGCC+TGG | + | chr4.3:70585656-70585675 | MS.gene77042:CDS | 35.0% |
| !! | TCTGCATTGACTAGAATCAA+TGG | - | chr4.3:70586943-70586962 | None:intergenic | 35.0% |
| AAATCTTTGCAGACTCGCAA+AGG | - | chr4.3:70585703-70585722 | None:intergenic | 40.0% | |
| ACTCGGATTGATATCTGATG+TGG | + | chr4.3:70584537-70584556 | MS.gene77042:intron | 40.0% | |
| AGATACCGTTGCGGAATTAT+TGG | + | chr4.3:70585760-70585779 | MS.gene77042:CDS | 40.0% | |
| AGTTTCCTGGCTAACAATAG+TGG | - | chr4.3:70587019-70587038 | None:intergenic | 40.0% | |
| ATCTTCTTACCATTGCGCTT+AGG | + | chr4.3:70584167-70584186 | MS.gene77042:intron | 40.0% | |
| ATTTGCAGTTACGGACATGA+AGG | + | chr4.3:70586809-70586828 | MS.gene77042:intron | 40.0% | |
| CAATCAGAGAGATTGTGTCT+AGG | + | chr4.3:70584140-70584159 | MS.gene77042:intron | 40.0% | |
| CAGGTTCATGGAAATAGTTG+TGG | + | chr4.3:70585728-70585747 | MS.gene77042:CDS | 40.0% | |
| CATGTGAAACTTCTGAGTCA+TGG | - | chr4.3:70586739-70586758 | None:intergenic | 40.0% | |
| CTAGACACAATCTCTCTGAT+TGG | - | chr4.3:70584142-70584161 | None:intergenic | 40.0% | |
| CTCAACCAATAATTCCGCAA+CGG | - | chr4.3:70585768-70585787 | None:intergenic | 40.0% | |
| CTGTTGAACTGGATTGAATC+GGG | + | chr4.3:70586649-70586668 | MS.gene77042:intron | 40.0% | |
| GAGGTGACAGGTTTAAATCT+TGG | - | chr4.3:70584442-70584461 | None:intergenic | 40.0% | |
| GAGTAATTTATCCTAGTGGG+TGG | - | chr4.3:70586351-70586370 | None:intergenic | 40.0% | |
| GGATTGATATCTGATGTGGA+AGG | + | chr4.3:70584541-70584560 | MS.gene77042:intron | 40.0% | |
| GTCTGCAAAGATTTCTTCAC+AGG | + | chr4.3:70585709-70585728 | MS.gene77042:CDS | 40.0% | |
| TAGAGAAGTAGTAGCTCACT+TGG | - | chr4.3:70586543-70586562 | None:intergenic | 40.0% | |
| TCAGAATGCCTCTTCTCAAT+AGG | - | chr4.3:70584654-70584673 | None:intergenic | 40.0% | |
| TGAGCATTAGCGTAATGGTA+AGG | - | chr4.3:70584483-70584502 | None:intergenic | 40.0% | |
| TGATATCTGATGTGGAAGGA+TGG | + | chr4.3:70584545-70584564 | MS.gene77042:intron | 40.0% | |
| TGCATATATCTGCTGTCTTC+AGG | - | chr4.3:70586972-70586991 | None:intergenic | 40.0% | |
| TGTTGAACTGGATTGAATCG+GGG | + | chr4.3:70586650-70586669 | MS.gene77042:intron | 40.0% | |
| TTCTCTCTGTGAATTGTGAG+AGG | + | chr4.3:70584333-70584352 | MS.gene77042:intron | 40.0% | |
| TTCTTCCACTATTGTTAGCC+AGG | + | chr4.3:70587011-70587030 | MS.gene77042:CDS | 40.0% | |
| ! | AACCAGCGAATTTACTGGTT+CGG | - | chr4.3:70586603-70586622 | None:intergenic | 40.0% |
| ! | AGGTAACGTATCGGTCAAAA+GGG | - | chr4.3:70584715-70584734 | None:intergenic | 40.0% |
| ! | CTTTTGCAAAGATACCGTTG+CGG | + | chr4.3:70585751-70585770 | MS.gene77042:CDS | 40.0% |
| ! | GAAACGGGCTTAGATTTGAA+AGG | - | chr4.3:70584974-70584993 | None:intergenic | 40.0% |
| ! | GGCTAACAATAGTGGAAGAA+GGG | - | chr4.3:70587011-70587030 | None:intergenic | 40.0% |
| ! | TATTATTGGCCTAAGCGCAA+TGG | - | chr4.3:70584179-70584198 | None:intergenic | 40.0% |
| ! | TGGCTAACAATAGTGGAAGA+AGG | - | chr4.3:70587012-70587031 | None:intergenic | 40.0% |
| ! | TGTACAGTGCTTTGAATTGG+TGG | + | chr4.3:70585607-70585626 | MS.gene77042:intron | 40.0% |
| !! | TTGAGAAGAGGCATTCTGAA+AGG | + | chr4.3:70584655-70584674 | MS.gene77042:intron | 40.0% |
| !!! | AAGAGGATGGTTTTCGAGTA+TGG | + | chr4.3:70586916-70586935 | MS.gene77042:CDS | 40.0% |
| !!! | GTTTTTGGTTTGTAACCTCG+AGG | - | chr4.3:70584461-70584480 | None:intergenic | 40.0% |
| AACAGAGCTGCAGTATAACC+GGG | - | chr4.3:70586634-70586653 | None:intergenic | 45.0% | |
| AAGGGTGAGCATTAGCGTAA+TGG | - | chr4.3:70584488-70584507 | None:intergenic | 45.0% | |
| ATACTGCAGCTCTGTTGAAC+TGG | + | chr4.3:70586638-70586657 | MS.gene77042:intron | 45.0% | |
| ATGTAGTCGGCTAGTATAGC+CGG | + | chr4.3:70584741-70584760 | MS.gene77042:intron | 45.0% | |
| CAAACCTGCTCGTTGAAAGA+CGG | - | chr4.3:70585252-70585271 | None:intergenic | 45.0% | |
| CAACAGAGCTGCAGTATAAC+CGG | - | chr4.3:70586635-70586654 | None:intergenic | 45.0% | |
| CGTTGAAAGACGGAAGATGA+CGG | - | chr4.3:70585242-70585261 | None:intergenic | 45.0% | |
| CTAGCCGACTACATAAGAAC+AGG | - | chr4.3:70584735-70584754 | None:intergenic | 45.0% | |
| CTTCCATGATTGCAGTTTCC+TGG | - | chr4.3:70587032-70587051 | None:intergenic | 45.0% | |
| GATTTAAACCTGTCACCTCG+AGG | + | chr4.3:70584443-70584462 | MS.gene77042:intron | 45.0% | |
| TAGCCAGGAAACTGCAATCA+TGG | + | chr4.3:70587026-70587045 | MS.gene77042:CDS | 45.0% | |
| TGTCAGCCCTGTATATAACC+TGG | + | chr4.3:70584787-70584806 | MS.gene77042:intron | 45.0% | |
| ! | AACAATAGTGGAAGAAGGGC+AGG | - | chr4.3:70587007-70587026 | None:intergenic | 45.0% |
| ! | AACTTTTCGCAGAGTTCTCC+AGG | - | chr4.3:70585677-70585696 | None:intergenic | 45.0% |
| ! | AATTTATCCTAGTGGGTGGG+TGG | - | chr4.3:70586347-70586366 | None:intergenic | 45.0% |
| ! | ATTTATCCTAGTGGGTGGGT+GGG | - | chr4.3:70586346-70586365 | None:intergenic | 45.0% |
| ! | CAGGTAACGTATCGGTCAAA+AGG | - | chr4.3:70584716-70584735 | None:intergenic | 45.0% |
| !! | TTCGCTGGTTTGTATAACCC+CGG | + | chr4.3:70586613-70586632 | MS.gene77042:intron | 45.0% |
| !!! | GATTTTGTTGGGTGCTGCTT+GGG | + | chr4.3:70583861-70583880 | MS.gene77042:CDS | 45.0% |
| !!! | TGATTTTGTTGGGTGCTGCT+TGG | + | chr4.3:70583860-70583879 | MS.gene77042:CDS | 45.0% |
| AATTCCGCTAGGTGAGGTCA+GGG | + | chr4.3:70584114-70584133 | MS.gene77042:intron | 50.0% | |
| ACAGAGCTGCAGTATAACCG+GGG | - | chr4.3:70586633-70586652 | None:intergenic | 50.0% | |
| AGAAGTTGAGTTAGGGCGAG+TGG | + | chr4.3:70584225-70584244 | MS.gene77042:intron | 50.0% | |
| ATGATCCGCTCATGTGAGGT+TGG | + | chr4.3:70584393-70584412 | MS.gene77042:intron | 50.0% | |
| CAATGCACGAGAATTCCGCT+AGG | + | chr4.3:70584103-70584122 | MS.gene77042:intron | 50.0% | |
| GACCGAACCAGTAAATTCGC+TGG | + | chr4.3:70586598-70586617 | MS.gene77042:intron | 50.0% | |
| GCAAGAGAGTTTGCAAACCC+TGG | + | chr4.3:70583892-70583911 | MS.gene77042:CDS | 50.0% | |
| GTTTGTAACCTCGAGGTGAC+AGG | - | chr4.3:70584454-70584473 | None:intergenic | 50.0% | |
| TAGTAGCTCACTTGGCACTG+CGG | - | chr4.3:70586535-70586554 | None:intergenic | 50.0% | |
| TCAACCAACCCTGGCTGAAA+AGG | - | chr4.3:70586681-70586700 | None:intergenic | 50.0% | |
| TCTTCCGTCTTTCAACGAGC+AGG | + | chr4.3:70585245-70585264 | MS.gene77042:CDS | 50.0% | |
| TCTTGCTAGGACTTGAACCC+TGG | + | chr4.3:70586267-70586286 | MS.gene77042:intron | 50.0% | |
| TCTTTGCAGACTCGCAAAGG+TGG | - | chr4.3:70585700-70585719 | None:intergenic | 50.0% | |
| TGAGATGATCCGCTCATGTG+AGG | + | chr4.3:70584389-70584408 | MS.gene77042:intron | 50.0% | |
| TGATCCGCTCATGTGAGGTT+GGG | + | chr4.3:70584394-70584413 | MS.gene77042:intron | 50.0% | |
| TGCAGTTACGGACATGAAGG+CGG | + | chr4.3:70586812-70586831 | MS.gene77042:intron | 50.0% | |
| TGTGAGGTTGGGGAGTCAAA+CGG | + | chr4.3:70584405-70584424 | MS.gene77042:intron | 50.0% | |
| ! | GATGACGGCAGGTATTGTGA+AGG | - | chr4.3:70585227-70585246 | None:intergenic | 50.0% |
| ! | TAAACCGGTTCAACCAACCC+TGG | - | chr4.3:70586690-70586709 | None:intergenic | 50.0% |
| ! | TGAACCTTTTCAGCCAGGGT+TGG | + | chr4.3:70586674-70586693 | MS.gene77042:intron | 50.0% |
| ACTCCCCAACCTCACATGAG+CGG | - | chr4.3:70584401-70584420 | None:intergenic | 55.0% | |
| AGTAGCTCACTTGGCACTGC+GGG | - | chr4.3:70586534-70586553 | None:intergenic | 55.0% | |
| CACGAGAATTCCGCTAGGTG+AGG | + | chr4.3:70584108-70584127 | MS.gene77042:intron | 55.0% | |
| GAATTCCGCTAGGTGAGGTC+AGG | + | chr4.3:70584113-70584132 | MS.gene77042:intron | 55.0% | |
| GATCCGCTCATGTGAGGTTG+GGG | + | chr4.3:70584395-70584414 | MS.gene77042:intron | 55.0% | |
| ! | GAAAGACGGAAGATGACGGC+AGG | - | chr4.3:70585238-70585257 | None:intergenic | 55.0% |
| ! | GGGCTGAACCTTTTCAGCCA+GGG | + | chr4.3:70586670-70586689 | MS.gene77042:intron | 55.0% |
| !! | TCAGCCAGGGTTGGTTGAAC+CGG | + | chr4.3:70586683-70586702 | MS.gene77042:intron | 55.0% |
| GTAGCTCACTTGGCACTGCG+GGG | - | chr4.3:70586533-70586552 | None:intergenic | 60.0% | |
| ! | GGGGCTGAACCTTTTCAGCC+AGG | + | chr4.3:70586669-70586688 | MS.gene77042:intron | 60.0% |
| GCTACACCCACCCACCCACT+AGG | + | chr4.3:70586337-70586356 | MS.gene77042:intron | 65.0% | |
| GGCGCCCTGACCTCACCTAG+CGG | - | chr4.3:70584121-70584140 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 70583832 | 70587077 | 70583832 | ID=MS.gene77042 |
| chr4.3 | mRNA | 70583832 | 70587077 | 70583832 | ID=MS.gene77042.t1;Parent=MS.gene77042 |
| chr4.3 | exon | 70583832 | 70583913 | 70583832 | ID=MS.gene77042.t1.exon1;Parent=MS.gene77042.t1 |
| chr4.3 | CDS | 70583832 | 70583913 | 70583832 | ID=cds.MS.gene77042.t1;Parent=MS.gene77042.t1 |
| chr4.3 | exon | 70585121 | 70585266 | 70585121 | ID=MS.gene77042.t1.exon2;Parent=MS.gene77042.t1 |
| chr4.3 | CDS | 70585121 | 70585266 | 70585121 | ID=cds.MS.gene77042.t1;Parent=MS.gene77042.t1 |
| chr4.3 | exon | 70585614 | 70585808 | 70585614 | ID=MS.gene77042.t1.exon3;Parent=MS.gene77042.t1 |
| chr4.3 | CDS | 70585614 | 70585808 | 70585614 | ID=cds.MS.gene77042.t1;Parent=MS.gene77042.t1 |
| chr4.3 | exon | 70585962 | 70586021 | 70585962 | ID=MS.gene77042.t1.exon4;Parent=MS.gene77042.t1 |
| chr4.3 | CDS | 70585962 | 70586021 | 70585962 | ID=cds.MS.gene77042.t1;Parent=MS.gene77042.t1 |
| chr4.3 | exon | 70586913 | 70587077 | 70586913 | ID=MS.gene77042.t1.exon5;Parent=MS.gene77042.t1 |
| chr4.3 | CDS | 70586913 | 70587077 | 70586913 | ID=cds.MS.gene77042.t1;Parent=MS.gene77042.t1 |
| Gene Sequence |
| Protein sequence |
