Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77480.t1 | XP_003601588.1 | 88.4 | 251 | 25 | 2 | 1 | 247 | 1 | 251 | 3.70E-117 | 431 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77480.t1 | G7J9K0 | 88.4 | 251 | 25 | 2 | 1 | 247 | 1 | 251 | 2.6e-117 | 431.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050781 | MS.gene77480 | 0.852353 | 4.88E-61 | -1.69E-46 |
| MS.gene050783 | MS.gene77480 | 0.819117 | 1.37E-52 | -1.69E-46 |
| MS.gene056040 | MS.gene77480 | 0.803983 | 2.69E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77480.t1 | MTR_3g083310 | 86.853 | 251 | 29 | 2 | 1 | 247 | 1 | 251 | 8.43e-151 | 420 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77480.t1 | AT3G32930 | 63.934 | 244 | 83 | 3 | 9 | 247 | 6 | 249 | 5.18e-109 | 314 |
| MS.gene77480.t1 | AT3G32930 | 63.934 | 244 | 83 | 3 | 9 | 247 | 6 | 249 | 5.18e-109 | 314 |
Find 70 sgRNAs with CRISPR-Local
Find 227 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAGGATGCCATTTGCTCTTA+AGG | 0.271455 | 3.2:+72124670 | None:intergenic |
| CCTGAGAGAATTGGGTTTGA+TGG | 0.285331 | 3.2:+72126796 | None:intergenic |
| TTCCACAAATCCCTTCTTCC+TGG | 0.294040 | 3.2:-72126958 | MS.gene77480:CDS |
| GTGACTTAGGGTTCTCTAAA+TGG | 0.308895 | 3.2:-72126651 | MS.gene77480:CDS |
| CTGAGTGTACCCTTGGTTGT+AGG | 0.345170 | 3.2:+72124651 | None:intergenic |
| CTGTTAAAACCTGAGAGAAT+TGG | 0.355797 | 3.2:+72126787 | None:intergenic |
| AATGAATCTGGTGGTGACTT+AGG | 0.370530 | 3.2:-72126664 | MS.gene77480:CDS |
| AGCACGGGTAGTGGGTGTTC+TGG | 0.381888 | 3.2:+72126900 | None:intergenic |
| TGTTAAAACCTGAGAGAATT+GGG | 0.383123 | 3.2:+72126788 | None:intergenic |
| TACTACGCCCTTCTCAAAAC+TGG | 0.396977 | 3.2:-72126832 | MS.gene77480:CDS |
| ATCCTACCAACCCACAGAAC+TGG | 0.421635 | 3.2:+72126862 | None:intergenic |
| CTTCTCAAAACTGGCTTCGT+TGG | 0.431395 | 3.2:-72126823 | MS.gene77480:CDS |
| GTTCCTTCTGAGTGTACCCT+TGG | 0.438395 | 3.2:+72124644 | None:intergenic |
| TTGTGGAAGATGGTTGAAGA+AGG | 0.447962 | 3.2:+72126973 | None:intergenic |
| CCATCAAACCCAATTCTCTC+AGG | 0.453906 | 3.2:-72126796 | MS.gene77480:intron |
| CTAAAGCTGAGAAGCTTGAG+AGG | 0.456579 | 3.2:-72124280 | MS.gene77480:CDS |
| AAATGGACGCAGGTCATACT+AGG | 0.458716 | 3.2:-72126634 | MS.gene77480:CDS |
| AAGAAGGGATTTGTGGAAGA+TGG | 0.459619 | 3.2:+72126963 | None:intergenic |
| CGTCGCCCCTCTGACTTGGA+TGG | 0.461976 | 3.2:+72124612 | None:intergenic |
| ATGAATCTGGTGGTGACTTA+GGG | 0.468357 | 3.2:-72126663 | MS.gene77480:CDS |
| TTTAATTCAGATTTGGACAT+TGG | 0.469823 | 3.2:-72126703 | MS.gene77480:intron |
| GCTAGTGACAATAATGAATC+TGG | 0.475678 | 3.2:-72126676 | MS.gene77480:CDS |
| AAGCAGCGAAGCACGGGTAG+TGG | 0.477607 | 3.2:+72126891 | None:intergenic |
| TGCTTGAAACTCCAGTTCTG+TGG | 0.482472 | 3.2:-72126873 | MS.gene77480:CDS |
| AACCAGGAAGAAGGGATTTG+TGG | 0.486657 | 3.2:+72126956 | None:intergenic |
| GTGTAATCCTTGTCACTAAG+AGG | 0.491997 | 3.2:+72124302 | None:intergenic |
| GATGGTTGAAGAAGGATTGT+GGG | 0.492916 | 3.2:+72126981 | None:intergenic |
| TAGGGAACCTTAAGAGCAAA+TGG | 0.495076 | 3.2:-72124677 | MS.gene77480:CDS |
| AGGATTGTGGGAGTGAAAGG+TGG | 0.504173 | 3.2:+72126993 | None:intergenic |
| AAGTCGTCGCCCCTCTGACT+TGG | 0.505603 | 3.2:+72124608 | None:intergenic |
| CTAAGAGGTCCAGCAGGAAA+AGG | 0.508425 | 3.2:+72124317 | None:intergenic |
| AAGTAGCAAAACCAGGAAGA+AGG | 0.520024 | 3.2:+72126947 | None:intergenic |
| CAAATGGCATCCTACAACCA+AGG | 0.526099 | 3.2:-72124661 | MS.gene77480:CDS |
| GTCGCCCCTCTGACTTGGAT+GGG | 0.530631 | 3.2:+72124613 | None:intergenic |
| ATTCGAAGAGAAAGTGCTCA+TGG | 0.530994 | 3.2:-72124416 | MS.gene77480:CDS |
| AGTTTCAAGCAGCGAAGCAC+GGG | 0.539509 | 3.2:+72126885 | None:intergenic |
| GAAACTCCAGTTCTGTGGGT+TGG | 0.542812 | 3.2:-72126868 | MS.gene77480:CDS |
| GCAAAGGAAGGAGCTAGCGT+AGG | 0.543999 | 3.2:-72124696 | MS.gene77480:CDS |
| GAGTTTCAAGCAGCGAAGCA+CGG | 0.549464 | 3.2:+72126884 | None:intergenic |
| CTCCAGTTCTGTGGGTTGGT+AGG | 0.555330 | 3.2:-72126864 | MS.gene77480:CDS |
| CAAAGGAAGGAGCTAGCGTA+GGG | 0.556026 | 3.2:-72124695 | MS.gene77480:CDS |
| ATTGCAAACCTTGTGAGAAG+TGG | 0.556246 | 3.2:+72124536 | None:intergenic |
| AGAAGGATTGTGGGAGTGAA+AGG | 0.556329 | 3.2:+72126990 | None:intergenic |
| ATCTGACAGTAGAGATGCAA+TGG | 0.557601 | 3.2:+72124578 | None:intergenic |
| TTTATTTGATCAGCAAAGGA+AGG | 0.561474 | 3.2:-72124708 | MS.gene77480:intron |
| TGTTGATGCCACTTCTCACA+AGG | 0.563180 | 3.2:-72124544 | MS.gene77480:intron |
| AGCAGCGAAGCACGGGTAGT+GGG | 0.564086 | 3.2:+72126892 | None:intergenic |
| AGATGGTTGAAGAAGGATTG+TGG | 0.566949 | 3.2:+72126980 | None:intergenic |
| GCTTGAAACTCCAGTTCTGT+GGG | 0.568099 | 3.2:-72126872 | MS.gene77480:CDS |
| TCCACAATGAGATGAGGAGT+TGG | 0.577242 | 3.2:+72124347 | None:intergenic |
| AGTAGCAAAACCAGGAAGAA+GGG | 0.581693 | 3.2:+72126948 | None:intergenic |
| TGCTGGACCTCTTAGTGACA+AGG | 0.585319 | 3.2:-72124309 | MS.gene77480:CDS |
| CCAAAGAAGGCTCAAACAGA+AGG | 0.589954 | 3.2:+72124242 | None:intergenic |
| TTGTCACTAAGAGGTCCAGC+AGG | 0.590375 | 3.2:+72124311 | None:intergenic |
| CAACCAAGGGTACACTCAGA+AGG | 0.601547 | 3.2:-72124647 | MS.gene77480:CDS |
| AGAGTCCCATCCAAGTCAGA+GGG | 0.604117 | 3.2:-72124618 | MS.gene77480:CDS |
| TAGAGTCCCATCCAAGTCAG+AGG | 0.616200 | 3.2:-72124619 | MS.gene77480:CDS |
| CAGGTCATACTAGGAAAACC+AGG | 0.632593 | 3.2:-72126625 | MS.gene77480:intron |
| GCAAATCACTACCACCGCAA+CGG | 0.638261 | 3.2:-72127040 | MS.gene77480:CDS |
| AAGAAAAGAGACCGTTGCGG+TGG | 0.643036 | 3.2:+72127029 | None:intergenic |
| ACCAACTCCTCATCTCATTG+TGG | 0.648776 | 3.2:-72124348 | MS.gene77480:CDS |
| GAGGGTGAAGTAGCAAAACC+AGG | 0.650465 | 3.2:+72126940 | None:intergenic |
| GTGATCTCCACAATGAGATG+AGG | 0.651259 | 3.2:+72124341 | None:intergenic |
| AGGGTTCTCTAAATGGACGC+AGG | 0.656865 | 3.2:-72126644 | MS.gene77480:CDS |
| TAAAGCTGAGAAGCTTGAGA+GGG | 0.670330 | 3.2:-72124279 | MS.gene77480:CDS |
| GAGAAGTGGCATCAACAAAG+TGG | 0.671337 | 3.2:+72124550 | None:intergenic |
| AAATGGCATCCTACAACCAA+GGG | 0.672811 | 3.2:-72124660 | MS.gene77480:CDS |
| AGTGACAATAATGAATCTGG+TGG | 0.727205 | 3.2:-72126673 | MS.gene77480:CDS |
| ATGAAGAAAAGAGACCGTTG+CGG | 0.743550 | 3.2:+72127026 | None:intergenic |
| GAGTCCCATCCAAGTCAGAG+GGG | 0.757747 | 3.2:-72124617 | MS.gene77480:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TCATTCAAGTAAAATATTTT+TGG | - | chr3.2:72125418-72125437 | MS.gene77480:intron | 15.0% |
| !!! | TTCATTTTTTAATTCAGATT+TGG | - | chr3.2:72124603-72124622 | MS.gene77480:CDS | 15.0% |
| !! | TAAGTTAAAAAAGGATTTGA+AGG | + | chr3.2:72126294-72126313 | None:intergenic | 20.0% |
| !! | TTTATAGAAGATTAAAGATC+TGG | - | chr3.2:72125365-72125384 | MS.gene77480:intron | 20.0% |
| !!! | TATTTTATAGTTACATGACA+TGG | + | chr3.2:72126401-72126420 | None:intergenic | 20.0% |
| !!! | TTAGAGTATCTTATGTAATA+GGG | + | chr3.2:72126158-72126177 | None:intergenic | 20.0% |
| !!! | TTTAGAGTATCTTATGTAAT+AGG | + | chr3.2:72126159-72126178 | None:intergenic | 20.0% |
| ! | AAAAAAATTAACCCCAGTAA+AGG | + | chr3.2:72124573-72124592 | None:intergenic | 25.0% |
| ! | AATATGGAAGGTAATGTTAA+AGG | + | chr3.2:72126516-72126535 | None:intergenic | 25.0% |
| ! | AGTAGCAATTATATAACTAC+TGG | - | chr3.2:72124798-72124817 | MS.gene77480:intron | 25.0% |
| ! | ATTGTAACAAAAAGACACTT+TGG | + | chr3.2:72126562-72126581 | None:intergenic | 25.0% |
| ! | CTATCAATAGGTCTAATTTA+CGG | - | chr3.2:72125962-72125981 | MS.gene77480:intron | 25.0% |
| ! | TATAAATGAGAAGTGATTCT+GGG | + | chr3.2:72125351-72125370 | None:intergenic | 25.0% |
| ! | TGAACAGCATAAGTTAAAAA+AGG | + | chr3.2:72126303-72126322 | None:intergenic | 25.0% |
| ! | TTAACATTACCTTCCATATT+GGG | - | chr3.2:72126516-72126535 | MS.gene77480:intron | 25.0% |
| ! | TTTAACATTACCTTCCATAT+TGG | - | chr3.2:72126515-72126534 | MS.gene77480:intron | 25.0% |
| ! | TTTAATTCAGATTTGGACAT+TGG | - | chr3.2:72124610-72124629 | MS.gene77480:CDS | 25.0% |
| !! | CAACTTGATTTCTTACATTT+TGG | - | chr3.2:72125478-72125497 | MS.gene77480:intron | 25.0% |
| !! | CAATTTTCATTTGTCTGTTT+CGG | - | chr3.2:72126796-72126815 | MS.gene77480:intron | 25.0% |
| !! | GAAAGTACAAAACATATGTT+CGG | - | chr3.2:72126463-72126482 | MS.gene77480:intron | 25.0% |
| !! | TTTTACTTGAATGAGACTTA+CGG | + | chr3.2:72125412-72125431 | None:intergenic | 25.0% |
| !!! | AAGTAAAATATTTTTGGCCA+AGG | - | chr3.2:72125424-72125443 | MS.gene77480:intron | 25.0% |
| !!! | TCTTACATTTTGGTTTAGTT+GGG | - | chr3.2:72125488-72125507 | MS.gene77480:intron | 25.0% |
| !!! | TTCTTACATTTTGGTTTAGT+TGG | - | chr3.2:72125487-72125506 | MS.gene77480:intron | 25.0% |
| !!! | TTGTTTTATTTGATCAGCAA+AGG | - | chr3.2:72126601-72126620 | MS.gene77480:intron | 25.0% |
| !!! | TTTTTAACTTATGCTGTTCA+CGG | - | chr3.2:72126303-72126322 | MS.gene77480:intron | 25.0% |
| AACTCATACCTCGATAATAA+TGG | + | chr3.2:72125820-72125839 | None:intergenic | 30.0% | |
| ACAAGTTTGATAAGAAGAGT+TGG | - | chr3.2:72126425-72126444 | MS.gene77480:intron | 30.0% | |
| AGCAATTATATAACTACTGG+TGG | - | chr3.2:72124801-72124820 | MS.gene77480:intron | 30.0% | |
| AGGATAGGAGATAATGTTAA+AGG | - | chr3.2:72125579-72125598 | MS.gene77480:intron | 30.0% | |
| ATAAATGAGAAGTGATTCTG+GGG | + | chr3.2:72125350-72125369 | None:intergenic | 30.0% | |
| ATAATGTTAAAGGCAAACCT+AGG | - | chr3.2:72125589-72125608 | MS.gene77480:intron | 30.0% | |
| ATCTGTCATTACCAACTATA+AGG | + | chr3.2:72125634-72125653 | None:intergenic | 30.0% | |
| ATCTGTGAATGCAAAGAATT+AGG | - | chr3.2:72124942-72124961 | MS.gene77480:intron | 30.0% | |
| CAGGGTAATAATAAACCTTA+AGG | + | chr3.2:72125783-72125802 | None:intergenic | 30.0% | |
| CATATTCTAGTCCTATCAAT+AGG | - | chr3.2:72125950-72125969 | MS.gene77480:intron | 30.0% | |
| CGTAAATTAGACCTATTGAT+AGG | + | chr3.2:72125964-72125983 | None:intergenic | 30.0% | |
| CTAGGATATTTCATTCTACA+AGG | + | chr3.2:72125680-72125699 | None:intergenic | 30.0% | |
| CTATAAATGAGAAGTGATTC+TGG | + | chr3.2:72125352-72125371 | None:intergenic | 30.0% | |
| CTATTGATAGGACTAGAATA+TGG | + | chr3.2:72125952-72125971 | None:intergenic | 30.0% | |
| GATGGAAGCAAAAATCAAAA+TGG | + | chr3.2:72126347-72126366 | None:intergenic | 30.0% | |
| GGATAATAACTATTGTAGAG+AGG | - | chr3.2:72124974-72124993 | MS.gene77480:intron | 30.0% | |
| GTAAAGGAAGAATGCTAAAA+TGG | + | chr3.2:72124557-72124576 | None:intergenic | 30.0% | |
| TGTAAACTTAACATAACAGC+AGG | - | chr3.2:72125194-72125213 | MS.gene77480:intron | 30.0% | |
| TGTTAAAACCTGAGAGAATT+GGG | + | chr3.2:72124528-72124547 | None:intergenic | 30.0% | |
| TTTAGCATTCTTCCTTTACT+GGG | - | chr3.2:72124558-72124577 | MS.gene77480:CDS | 30.0% | |
| TTTAGTGGCATCAATTTATG+AGG | + | chr3.2:72126856-72126875 | None:intergenic | 30.0% | |
| TTTATTATTACCCTGAACAC+AGG | - | chr3.2:72125788-72125807 | MS.gene77480:intron | 30.0% | |
| TTTATTTGATCAGCAAAGGA+AGG | - | chr3.2:72126605-72126624 | MS.gene77480:intron | 30.0% | |
| ! | AAAAAAAAACTTCGGCTTGT+TGG | + | chr3.2:72125009-72125028 | None:intergenic | 30.0% |
| ! | AATGTCTTTAGAGATCCTTA+AGG | - | chr3.2:72125765-72125784 | MS.gene77480:intron | 30.0% |
| ! | GATATCATGTTGGAAGTATA+AGG | - | chr3.2:72126037-72126056 | MS.gene77480:intron | 30.0% |
| ! | TAGACTTTTCAATTTTGTCG+TGG | + | chr3.2:72125090-72125109 | None:intergenic | 30.0% |
| ! | TTTTAGCATTCTTCCTTTAC+TGG | - | chr3.2:72124557-72124576 | MS.gene77480:CDS | 30.0% |
| !! | GTATAAGGTTTTAGTCTTTG+AGG | - | chr3.2:72126052-72126071 | MS.gene77480:intron | 30.0% |
| !! | TTTAGTCTTTGAGGTATAGA+TGG | - | chr3.2:72126061-72126080 | MS.gene77480:intron | 30.0% |
| !!! | CTTACATTTTGGTTTAGTTG+GGG | - | chr3.2:72125489-72125508 | MS.gene77480:intron | 30.0% |
| AACCTATATGACCTCAGATT+TGG | + | chr3.2:72125848-72125867 | None:intergenic | 35.0% | |
| AGATTAAAGATCTGGTAGAG+TGG | - | chr3.2:72125373-72125392 | MS.gene77480:intron | 35.0% | |
| AGCTGAGTTTATGAGATAGA+TGG | + | chr3.2:72126267-72126286 | None:intergenic | 35.0% | |
| AGTGACAATAATGAATCTGG+TGG | - | chr3.2:72124640-72124659 | MS.gene77480:CDS | 35.0% | |
| AGTTGAAATTCCATCACTTG+CGG | + | chr3.2:72125463-72125482 | None:intergenic | 35.0% | |
| ATGGTGCGATATTAGAAGAA+TGG | - | chr3.2:72125279-72125298 | MS.gene77480:intron | 35.0% | |
| CTGTTAAAACCTGAGAGAAT+TGG | + | chr3.2:72124529-72124548 | None:intergenic | 35.0% | |
| CTTCCAACATGATATCAATG+TGG | + | chr3.2:72126033-72126052 | None:intergenic | 35.0% | |
| GCTAGTGACAATAATGAATC+TGG | - | chr3.2:72124637-72124656 | MS.gene77480:CDS | 35.0% | |
| GGATCTGACTATGCAAATAA+AGG | - | chr3.2:72125552-72125571 | MS.gene77480:intron | 35.0% | |
| GTTTGTGTATGTAAGAAAGC+AGG | - | chr3.2:72124877-72124896 | MS.gene77480:intron | 35.0% | |
| TCTTTGCATTCACAGATTGT+TGG | + | chr3.2:72124939-72124958 | None:intergenic | 35.0% | |
| TGTTAGCTGCAGGTATTATT+AGG | - | chr3.2:72125914-72125933 | MS.gene77480:intron | 35.0% | |
| TTAGCATTCTTCCTTTACTG+GGG | - | chr3.2:72124559-72124578 | MS.gene77480:CDS | 35.0% | |
| ! | ACTATGCAAATAAAGGTGTG+AGG | - | chr3.2:72125559-72125578 | MS.gene77480:intron | 35.0% |
| ! | CATGAAGTTCCGTAGATTTT+GGG | + | chr3.2:72125258-72125277 | None:intergenic | 35.0% |
| !! | TTGGTAATGACAGATTTGCA+AGG | - | chr3.2:72125639-72125658 | MS.gene77480:intron | 35.0% |
| !!! | AATTTTGAAACCGCAAGTGA+TGG | - | chr3.2:72125450-72125469 | MS.gene77480:intron | 35.0% |
| !!! | GTAACTCATTAGCTTTTGCT+CGG | - | chr3.2:72124850-72124869 | MS.gene77480:intron | 35.0% |
| !!! | GTTTTTTTGAGGGAAATGGA+GGG | + | chr3.2:72124394-72124413 | None:intergenic | 35.0% |
| !!! | TAACTCATTAGCTTTTGCTC+GGG | - | chr3.2:72124851-72124870 | MS.gene77480:intron | 35.0% |
| !!! | TCTGGTTTTTTTGAGGGAAA+TGG | + | chr3.2:72124398-72124417 | None:intergenic | 35.0% |
| AAATGGCATCCTACAACCAA+GGG | - | chr3.2:72126653-72126672 | MS.gene77480:CDS | 40.0% | |
| AAGAAACTGCAACTAACAGC+AGG | - | chr3.2:72125122-72125141 | MS.gene77480:intron | 40.0% | |
| AAGAAGGGATTTGTGGAAGA+TGG | + | chr3.2:72124353-72124372 | None:intergenic | 40.0% | |
| AAGTAGCAAAACCAGGAAGA+AGG | + | chr3.2:72124369-72124388 | None:intergenic | 40.0% | |
| AATCGCAAAGTAGGTATACC+TGG | + | chr3.2:72124709-72124728 | None:intergenic | 40.0% | |
| AATCTACGGAACTTCATGGA+TGG | - | chr3.2:72125260-72125279 | MS.gene77480:intron | 40.0% | |
| ACCCTACAATGGTCATTTAG+TGG | + | chr3.2:72126871-72126890 | None:intergenic | 40.0% | |
| AGATGGTTGAAGAAGGATTG+TGG | + | chr3.2:72124336-72124355 | None:intergenic | 40.0% | |
| AGTAGCAAAACCAGGAAGAA+GGG | + | chr3.2:72124368-72124387 | None:intergenic | 40.0% | |
| ATCTGACAGTAGAGATGCAA+TGG | + | chr3.2:72126738-72126757 | None:intergenic | 40.0% | |
| ATCTGCAGCATCCTTATAGT+TGG | - | chr3.2:72125620-72125639 | MS.gene77480:intron | 40.0% | |
| ATGAAGAAAAGAGACCGTTG+CGG | + | chr3.2:72124290-72124309 | None:intergenic | 40.0% | |
| ATTGCAAACCTTGTGAGAAG+TGG | + | chr3.2:72126780-72126799 | None:intergenic | 40.0% | |
| CCAAAATCTACGGAACTTCA+TGG | - | chr3.2:72125256-72125275 | MS.gene77480:intron | 40.0% | |
| CGAATTTGACAACCCTACAA+TGG | + | chr3.2:72126882-72126901 | None:intergenic | 40.0% | |
| CGATATTAGAAGAATGGACC+GGG | - | chr3.2:72125285-72125304 | MS.gene77480:intron | 40.0% | |
| GAAAGGACTACAGTTGACTA+GGG | - | chr3.2:72125316-72125335 | MS.gene77480:intron | 40.0% | |
| GAAGTGATCAATCGCAAAGT+AGG | + | chr3.2:72124718-72124737 | None:intergenic | 40.0% | |
| GATAGGACTAGAATATGGAC+TGG | + | chr3.2:72125947-72125966 | None:intergenic | 40.0% | |
| GATCACTTCATGCTTCATAG+TGG | - | chr3.2:72124729-72124748 | MS.gene77480:intron | 40.0% | |
| GATGGTTGAAGAAGGATTGT+GGG | + | chr3.2:72124335-72124354 | None:intergenic | 40.0% | |
| GCCACTAAATGACCATTGTA+GGG | - | chr3.2:72126867-72126886 | MS.gene77480:CDS | 40.0% | |
| GCGATATTAGAAGAATGGAC+CGG | - | chr3.2:72125284-72125303 | MS.gene77480:intron | 40.0% | |
| GCGGTTTCAAAATTACTCCT+TGG | + | chr3.2:72125444-72125463 | None:intergenic | 40.0% | |
| GGATCATGCCATTATTATCG+AGG | - | chr3.2:72125809-72125828 | MS.gene77480:intron | 40.0% | |
| GTGACTTAGGGTTCTCTAAA+TGG | - | chr3.2:72124662-72124681 | MS.gene77480:CDS | 40.0% | |
| GTGCCACATTGATATCATGT+TGG | - | chr3.2:72126027-72126046 | MS.gene77480:intron | 40.0% | |
| GTGTAATCCTTGTCACTAAG+AGG | + | chr3.2:72127014-72127033 | None:intergenic | 40.0% | |
| TAAAGCTGAGAAGCTTGAGA+GGG | - | chr3.2:72127034-72127053 | MS.gene77480:CDS | 40.0% | |
| TAATTTACGGAACTCAGCAG+CGG | - | chr3.2:72125975-72125994 | MS.gene77480:intron | 40.0% | |
| TACCCTCTAGTATCAAGTAG+CGG | - | chr3.2:72125228-72125247 | MS.gene77480:intron | 40.0% | |
| TAGGGAACCTTAAGAGCAAA+TGG | - | chr3.2:72126636-72126655 | MS.gene77480:CDS | 40.0% | |
| TAGGTTACCTAACCATCAGA+AGG | - | chr3.2:72125862-72125881 | MS.gene77480:intron | 40.0% | |
| TGAAAGGACTACAGTTGACT+AGG | - | chr3.2:72125315-72125334 | MS.gene77480:intron | 40.0% | |
| TGAGTTGTATGCCAAATCTG+AGG | - | chr3.2:72125834-72125853 | MS.gene77480:intron | 40.0% | |
| TGCCACTAAATGACCATTGT+AGG | - | chr3.2:72126866-72126885 | MS.gene77480:CDS | 40.0% | |
| TTGTGGAAGATGGTTGAAGA+AGG | + | chr3.2:72124343-72124362 | None:intergenic | 40.0% | |
| TTGTTGGATGCATCCATACA+CGG | + | chr3.2:72124923-72124942 | None:intergenic | 40.0% | |
| ! | AATGAATCTGGTGGTGACTT+AGG | - | chr3.2:72124649-72124668 | MS.gene77480:CDS | 40.0% |
| ! | ATGAATCTGGTGGTGACTTA+GGG | - | chr3.2:72124650-72124669 | MS.gene77480:CDS | 40.0% |
| ! | CCATGAAGTTCCGTAGATTT+TGG | + | chr3.2:72125259-72125278 | None:intergenic | 40.0% |
| ! | GCAAATAAAGGTGTGAGGAT+AGG | - | chr3.2:72125564-72125583 | MS.gene77480:intron | 40.0% |
| ! | GTGTGTGACATTTAGAGTGT+TGG | + | chr3.2:72126230-72126249 | None:intergenic | 40.0% |
| ! | TAGGATGCCATTTGCTCTTA+AGG | + | chr3.2:72126646-72126665 | None:intergenic | 40.0% |
| ! | TGCCAAATCTGAGGTCATAT+AGG | - | chr3.2:72125843-72125862 | MS.gene77480:intron | 40.0% |
| ! | TTCATGCTTCATAGTGGAAC+TGG | - | chr3.2:72124735-72124754 | MS.gene77480:intron | 40.0% |
| !! | ATGTCAGTTCTCTAAAGCAG+AGG | - | chr3.2:72125041-72125060 | MS.gene77480:intron | 40.0% |
| !! | ATTCGAAGAGAAAGTGCTCA+TGG | - | chr3.2:72126897-72126916 | MS.gene77480:CDS | 40.0% |
| !! | CTCTGAAATCACTCCAAACT+CGG | + | chr3.2:72125715-72125734 | None:intergenic | 40.0% |
| !!! | AACGAAGCCAGTTTTGAGAA+GGG | + | chr3.2:72124491-72124510 | None:intergenic | 40.0% |
| !!! | ACATTTTGGTTTAGTTGGGG+TGG | - | chr3.2:72125492-72125511 | MS.gene77480:intron | 40.0% |
| !!! | ATTTTGGTTTAGTTGGGGTG+GGG | - | chr3.2:72125494-72125513 | MS.gene77480:intron | 40.0% |
| !!! | CATTTTGGTTTAGTTGGGGT+GGG | - | chr3.2:72125493-72125512 | MS.gene77480:intron | 40.0% |
| !!! | GGGTGTTCTGGTTTTTTTGA+GGG | + | chr3.2:72124404-72124423 | None:intergenic | 40.0% |
| !!! | GGTTTTTTTGAGGGAAATGG+AGG | + | chr3.2:72124395-72124414 | None:intergenic | 40.0% |
| !!! | TGGGTGTTCTGGTTTTTTTG+AGG | + | chr3.2:72124405-72124424 | None:intergenic | 40.0% |
| AAATGGACGCAGGTCATACT+AGG | - | chr3.2:72124679-72124698 | MS.gene77480:CDS | 45.0% | |
| AACCAGGAAGAAGGGATTTG+TGG | + | chr3.2:72124360-72124379 | None:intergenic | 45.0% | |
| AATGGCATGATCCTGTGTTC+AGG | + | chr3.2:72125802-72125821 | None:intergenic | 45.0% | |
| ACCAACTCCTCATCTCATTG+TGG | - | chr3.2:72126965-72126984 | MS.gene77480:CDS | 45.0% | |
| ACTCGGCAGAGGAAATAACT+AGG | + | chr3.2:72125698-72125717 | None:intergenic | 45.0% | |
| AGAAGGATTGTGGGAGTGAA+AGG | + | chr3.2:72124326-72124345 | None:intergenic | 45.0% | |
| AGATCCGAATGCATATCGAG+GGG | + | chr3.2:72126378-72126397 | None:intergenic | 45.0% | |
| ATGCAAAGAATTAGGCAGCG+AGG | - | chr3.2:72124950-72124969 | MS.gene77480:intron | 45.0% | |
| ATGGCATGATCCTGTGTTCA+GGG | + | chr3.2:72125801-72125820 | None:intergenic | 45.0% | |
| ATTAGAAGAATGGACCGGGA+TGG | - | chr3.2:72125289-72125308 | MS.gene77480:intron | 45.0% | |
| CAAATGGCATCCTACAACCA+AGG | - | chr3.2:72126652-72126671 | MS.gene77480:CDS | 45.0% | |
| CACCGCTACTTGATACTAGA+GGG | + | chr3.2:72125233-72125252 | None:intergenic | 45.0% | |
| CAGGTCATACTAGGAAAACC+AGG | - | chr3.2:72124688-72124707 | MS.gene77480:CDS | 45.0% | |
| CATATTGGGCTCAACACTCA+AGG | - | chr3.2:72126530-72126549 | MS.gene77480:intron | 45.0% | |
| CCATCAAACCCAATTCTCTC+AGG | - | chr3.2:72124517-72124536 | MS.gene77480:intron | 45.0% | |
| CCTGAGAGAATTGGGTTTGA+TGG | + | chr3.2:72124520-72124539 | None:intergenic | 45.0% | |
| CTAAAGCTGAGAAGCTTGAG+AGG | - | chr3.2:72127033-72127052 | MS.gene77480:CDS | 45.0% | |
| CTGAGGACAGGAAAACTTAG+CGG | - | chr3.2:72125885-72125904 | MS.gene77480:intron | 45.0% | |
| GAGAAGTGGCATCAACAAAG+TGG | + | chr3.2:72126766-72126785 | None:intergenic | 45.0% | |
| GAGATCCGAATGCATATCGA+GGG | + | chr3.2:72126379-72126398 | None:intergenic | 45.0% | |
| GCTTGAAACTCCAGTTCTGT+GGG | - | chr3.2:72124441-72124460 | MS.gene77480:intron | 45.0% | |
| GTGATCTCCACAATGAGATG+AGG | + | chr3.2:72126975-72126994 | None:intergenic | 45.0% | |
| TACTACGCCCTTCTCAAAAC+TGG | - | chr3.2:72124481-72124500 | MS.gene77480:intron | 45.0% | |
| TCAACCCCTCGATATGCATT+CGG | - | chr3.2:72126371-72126390 | MS.gene77480:intron | 45.0% | |
| TCCACAATGAGATGAGGAGT+TGG | + | chr3.2:72126969-72126988 | None:intergenic | 45.0% | |
| TGAGGACAGGAAAACTTAGC+GGG | - | chr3.2:72125886-72125905 | MS.gene77480:intron | 45.0% | |
| TGCTTGAAACTCCAGTTCTG+TGG | - | chr3.2:72124440-72124459 | MS.gene77480:intron | 45.0% | |
| TTCCACAAATCCCTTCTTCC+TGG | - | chr3.2:72124355-72124374 | MS.gene77480:CDS | 45.0% | |
| ! | AGTGTTGAGCCCAATATGGA+AGG | + | chr3.2:72126528-72126547 | None:intergenic | 45.0% |
| ! | CGAGTTTGGAGTGATTTCAG+AGG | - | chr3.2:72125713-72125732 | MS.gene77480:intron | 45.0% |
| ! | CTTCTCAAAACTGGCTTCGT+TGG | - | chr3.2:72124490-72124509 | MS.gene77480:intron | 45.0% |
| ! | GCAAGATTGGTCACAGAAGA+TGG | - | chr3.2:72126005-72126024 | MS.gene77480:intron | 45.0% |
| ! | GTTATTTCCTCTGCCGAGTT+TGG | - | chr3.2:72125699-72125718 | MS.gene77480:intron | 45.0% |
| ! | TGTTGATGCCACTTCTCACA+AGG | - | chr3.2:72126769-72126788 | MS.gene77480:intron | 45.0% |
| !! | CTAGAATATGGACTGGAACG+AGG | + | chr3.2:72125940-72125959 | None:intergenic | 45.0% |
| !! | CTTGAGTGTTGAGCCCAATA+TGG | + | chr3.2:72126532-72126551 | None:intergenic | 45.0% |
| !! | TATCGAGGGGTTGATGATGA+TGG | + | chr3.2:72126365-72126384 | None:intergenic | 45.0% |
| !!! | CAACGAAGCCAGTTTTGAGA+AGG | + | chr3.2:72124492-72124511 | None:intergenic | 45.0% |
| !!! | GGAAACGAGGGTCACTTTTA+TGG | - | chr3.2:72125531-72125550 | MS.gene77480:intron | 45.0% |
| !! | AAAAAAAAAAAAAAAAACTT+CGG | + | chr3.2:72125017-72125036 | None:intergenic | 5.0% |
| !!! | AAGTTTTTTTTTTTTTTTTT+AGG | - | chr3.2:72125017-72125036 | MS.gene77480:intron | 5.0% |
| AAGAAAAGAGACCGTTGCGG+TGG | + | chr3.2:72124287-72124306 | None:intergenic | 50.0% | |
| AATCACTCCAAACTCGGCAG+AGG | + | chr3.2:72125709-72125728 | None:intergenic | 50.0% | |
| ACCTAACCATCAGAAGGCTG+AGG | - | chr3.2:72125868-72125887 | MS.gene77480:intron | 50.0% | |
| AGAGTCCCATCCAAGTCAGA+GGG | - | chr3.2:72126695-72126714 | MS.gene77480:CDS | 50.0% | |
| AGCGGTGCTCCCAAAATCTA+CGG | - | chr3.2:72125246-72125265 | MS.gene77480:intron | 50.0% | |
| AGGATTGTGGGAGTGAAAGG+TGG | + | chr3.2:72124323-72124342 | None:intergenic | 50.0% | |
| AGGGTTCTCTAAATGGACGC+AGG | - | chr3.2:72124669-72124688 | MS.gene77480:CDS | 50.0% | |
| AGTTTCAAGCAGCGAAGCAC+GGG | + | chr3.2:72124431-72124450 | None:intergenic | 50.0% | |
| ATCCTACCAACCCACAGAAC+TGG | + | chr3.2:72124454-72124473 | None:intergenic | 50.0% | |
| CAAAGAATTAGGCAGCGAGG+AGG | - | chr3.2:72124953-72124972 | MS.gene77480:intron | 50.0% | |
| CAAAGGAAGGAGCTAGCGTA+GGG | - | chr3.2:72126618-72126637 | MS.gene77480:intron | 50.0% | |
| CAGCGGAATAGTGGCAAGAT+TGG | - | chr3.2:72125992-72126011 | MS.gene77480:intron | 50.0% | |
| CTAAGAGGTCCAGCAGGAAA+AGG | + | chr3.2:72126999-72127018 | None:intergenic | 50.0% | |
| CTGAGTGTACCCTTGGTTGT+AGG | + | chr3.2:72126665-72126684 | None:intergenic | 50.0% | |
| GAAACTCCAGTTCTGTGGGT+TGG | - | chr3.2:72124445-72124464 | MS.gene77480:intron | 50.0% | |
| GACAAGCTTAGGGGAAACGA+GGG | - | chr3.2:72125519-72125538 | MS.gene77480:intron | 50.0% | |
| GAGGGTGAAGTAGCAAAACC+AGG | + | chr3.2:72124376-72124395 | None:intergenic | 50.0% | |
| GAGTTTCAAGCAGCGAAGCA+CGG | + | chr3.2:72124432-72124451 | None:intergenic | 50.0% | |
| GCAAATCACTACCACCGCAA+CGG | - | chr3.2:72124273-72124292 | MS.gene77480:CDS | 50.0% | |
| GCACCGCTACTTGATACTAG+AGG | + | chr3.2:72125234-72125253 | None:intergenic | 50.0% | |
| GGAGATCCGAATGCATATCG+AGG | + | chr3.2:72126380-72126399 | None:intergenic | 50.0% | |
| GGTACAGTAGCTCAGCTGTT+AGG | + | chr3.2:72126495-72126514 | None:intergenic | 50.0% | |
| GTTCCTTCTGAGTGTACCCT+TGG | + | chr3.2:72126672-72126691 | None:intergenic | 50.0% | |
| TAGAGTCCCATCCAAGTCAG+AGG | - | chr3.2:72126694-72126713 | MS.gene77480:CDS | 50.0% | |
| TAGTCCTTTCACGTCCATCC+CGG | + | chr3.2:72125306-72125325 | None:intergenic | 50.0% | |
| TCCTCAGCCTTCTGATGGTT+AGG | + | chr3.2:72125872-72125891 | None:intergenic | 50.0% | |
| TGACAAGCTTAGGGGAAACG+AGG | - | chr3.2:72125518-72125537 | MS.gene77480:intron | 50.0% | |
| TGCTGGACCTCTTAGTGACA+AGG | - | chr3.2:72127004-72127023 | MS.gene77480:CDS | 50.0% | |
| TTGTCACTAAGAGGTCCAGC+AGG | + | chr3.2:72127005-72127024 | None:intergenic | 50.0% | |
| ! | CAACCAAGGGTACACTCAGA+AGG | - | chr3.2:72126666-72126685 | MS.gene77480:CDS | 50.0% |
| ! | GAGATCACACCTTTTCCTGC+TGG | - | chr3.2:72126987-72127006 | MS.gene77480:CDS | 50.0% |
| ACCATCAGAAGGCTGAGGAC+AGG | - | chr3.2:72125873-72125892 | MS.gene77480:intron | 55.0% | |
| CATCCATACACGGCGAGTCT+CGG | + | chr3.2:72124913-72124932 | None:intergenic | 55.0% | |
| GAGTCCCATCCAAGTCAGAG+GGG | - | chr3.2:72126696-72126715 | MS.gene77480:CDS | 55.0% | |
| GCAAAGGAAGGAGCTAGCGT+AGG | - | chr3.2:72126617-72126636 | MS.gene77480:intron | 55.0% | |
| GCGGGTGAAATGTTAGCTGC+AGG | - | chr3.2:72125904-72125923 | MS.gene77480:intron | 55.0% | |
| GCTGCAGATCAGCACAACCT+AGG | + | chr3.2:72125609-72125628 | None:intergenic | 55.0% | |
| GGAACTCAGCAGCGGAATAG+TGG | - | chr3.2:72125983-72126002 | MS.gene77480:intron | 55.0% | |
| TCCTGTCCTCAGCCTTCTGA+TGG | + | chr3.2:72125877-72125896 | None:intergenic | 55.0% | |
| !! | CTCCAGTTCTGTGGGTTGGT+AGG | - | chr3.2:72124449-72124468 | MS.gene77480:intron | 55.0% |
| AAGCAGCGAAGCACGGGTAG+TGG | + | chr3.2:72124425-72124444 | None:intergenic | 60.0% | |
| AAGTCGTCGCCCCTCTGACT+TGG | + | chr3.2:72126708-72126727 | None:intergenic | 60.0% | |
| AGCAGCGAAGCACGGGTAGT+GGG | + | chr3.2:72124424-72124443 | None:intergenic | 60.0% | |
| GAACCGAGACTCGCCGTGTA+TGG | - | chr3.2:72124907-72124926 | MS.gene77480:intron | 60.0% | |
| GGGTGGGGCTGACAAGCTTA+GGG | - | chr3.2:72125509-72125528 | MS.gene77480:intron | 60.0% | |
| GGTGGGGCTGACAAGCTTAG+GGG | - | chr3.2:72125510-72125529 | MS.gene77480:intron | 60.0% | |
| TGGACCGGGATGGACGTGAA+AGG | - | chr3.2:72125299-72125318 | MS.gene77480:intron | 60.0% | |
| !! | AGCACGGGTAGTGGGTGTTC+TGG | + | chr3.2:72124416-72124435 | None:intergenic | 60.0% |
| !! | GTCGCCCCTCTGACTTGGAT+GGG | + | chr3.2:72126703-72126722 | None:intergenic | 60.0% |
| GGGGTGGGGCTGACAAGCTT+AGG | - | chr3.2:72125508-72125527 | MS.gene77480:intron | 65.0% | |
| !! | CGTCGCCCCTCTGACTTGGA+TGG | + | chr3.2:72126704-72126723 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 72124253 | 72127082 | 72124253 | ID=MS.gene77480 |
| chr3.2 | mRNA | 72124253 | 72127082 | 72124253 | ID=MS.gene77480.t1;Parent=MS.gene77480 |
| chr3.2 | exon | 72126797 | 72127082 | 72126797 | ID=MS.gene77480.t1.exon1;Parent=MS.gene77480.t1 |
| chr3.2 | CDS | 72126797 | 72127082 | 72126797 | ID=cds.MS.gene77480.t1;Parent=MS.gene77480.t1 |
| chr3.2 | exon | 72126626 | 72126715 | 72126626 | ID=MS.gene77480.t1.exon2;Parent=MS.gene77480.t1 |
| chr3.2 | CDS | 72126626 | 72126715 | 72126626 | ID=cds.MS.gene77480.t1;Parent=MS.gene77480.t1 |
| chr3.2 | exon | 72124545 | 72124717 | 72124545 | ID=MS.gene77480.t1.exon3;Parent=MS.gene77480.t1 |
| chr3.2 | CDS | 72124545 | 72124717 | 72124545 | ID=cds.MS.gene77480.t1;Parent=MS.gene77480.t1 |
| chr3.2 | exon | 72124253 | 72124447 | 72124253 | ID=MS.gene77480.t1.exon4;Parent=MS.gene77480.t1 |
| chr3.2 | CDS | 72124253 | 72124447 | 72124253 | ID=cds.MS.gene77480.t1;Parent=MS.gene77480.t1 |
| Gene Sequence |
| Protein sequence |
