AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene056040


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene056040.t1 MTR_1g082900 93.175 337 10 5 1 334 1 327 0.0 624
MS.gene056040.t1 MTR_1g082900 89.455 275 16 5 1 272 1 265 1.24e-167 467
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene056040.t1 AT5G27560 63.777 323 101 4 27 334 20 341 7.11e-142 405
MS.gene056040.t1 AT5G27560 63.777 323 101 4 27 334 20 341 7.11e-142 405
MS.gene056040.t1 AT5G27560 63.777 323 101 4 27 334 20 341 7.11e-142 405
MS.gene056040.t1 AT5G27560 63.009 319 102 4 27 330 20 337 6.95e-138 395

Find 87 sgRNAs with CRISPR-Local

Find 205 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTGCAAGCAAATATCTATT+TGG 0.206377 1.1:+61370800 None:intergenic
CTCAAACTTGGCGCCAAGTT+TGG 0.262372 1.1:+61373452 None:intergenic
TATGTTGCGCAGATGTTATT+TGG 0.303732 1.1:-61370584 MS.gene056040:intron
AAATGGAGTGGGTGAGGGTG+AGG 0.313772 1.1:+61373536 None:intergenic
GAAAATTGAGGATGGGAAAA+TGG 0.319876 1.1:+61373519 None:intergenic
TGCCATTTGGTGCAGTATTT+CGG 0.343945 1.1:-61371199 MS.gene056040:CDS
ACCTCAATATCTTCAGTATC+AGG 0.376552 1.1:+61370761 None:intergenic
ATTACTGCACCTTCCAAGTC+TGG 0.380610 1.1:+61373257 None:intergenic
ACCGCATCATTTGTATCTTC+AGG 0.381954 1.1:-61373218 MS.gene056040:CDS
GATATAATGTACGGCAGTTA+AGG 0.386410 1.1:-61371650 MS.gene056040:CDS
AGAGCTGCAGCACCGGCATC+TGG 0.389473 1.1:+61372461 None:intergenic
TCCACCTCCACCTCCAAACT+TGG 0.392380 1.1:-61373465 MS.gene056040:CDS
ACCTTGGAATTTCTCAAACT+TGG 0.396675 1.1:+61373440 None:intergenic
AACAGACTTTGTCCTTGCTC+TGG 0.399492 1.1:+61370542 None:intergenic
AGAGTGTTGTTGAGTGGAAC+TGG 0.404963 1.1:+61373562 None:intergenic
GAGGATGATGAAGGAGGTTC+AGG 0.407540 1.1:+61373414 None:intergenic
TGCAGTATTTCGGTGTTATC+CGG 0.410669 1.1:-61371189 MS.gene056040:CDS
TATTCTAACATTTGATGATC+AGG 0.417206 1.1:+61372117 None:intergenic
CTGCAGCTCTTCTAAAATAT+CGG 0.417986 1.1:-61372448 MS.gene056040:CDS
CCCCGACATCTTTGCTATAC+AGG 0.421963 1.1:+61371676 None:intergenic
AAGGCGCACAGTTGGAGCTC+TGG 0.422719 1.1:-61373055 MS.gene056040:CDS
ATTCTTCCATTGGAAAATTG+AGG 0.430950 1.1:+61373507 None:intergenic
GCGTGGATTCCACATGATAA+GGG 0.432418 1.1:+61371698 None:intergenic
GGCGTGGATTCCACATGATA+AGG 0.432489 1.1:+61371697 None:intergenic
GCCTGTATAGCAAAGATGTC+GGG 0.439653 1.1:-61371677 MS.gene056040:CDS
ATGGGAAAATGGAGTGGGTG+AGG 0.443249 1.1:+61373530 None:intergenic
TTCCACATGATAAGGGGCCT+TGG 0.447832 1.1:+61371705 None:intergenic
TGCAGTAATACAATCAAGTC+AGG 0.453229 1.1:-61373243 MS.gene056040:CDS
CACCGAAATACTGCACCAAA+TGG 0.466864 1.1:+61371197 None:intergenic
CATATGCGACCTATGCCATT+TGG 0.467305 1.1:-61371212 MS.gene056040:CDS
CAGTTGTTTACCTCCAGACT+TGG 0.469645 1.1:-61373270 MS.gene056040:CDS
GCCAAGTTTGGAGGTGGAGG+TGG 0.474503 1.1:+61373464 None:intergenic
GGCGCCAAGTTTGGAGGTGG+AGG 0.475987 1.1:+61373461 None:intergenic
GCGAAGGGAAATTCTTCCAT+TGG 0.484219 1.1:+61373497 None:intergenic
TATTCAAGAAACTAAATGTC+AGG 0.484409 1.1:-61373003 MS.gene056040:intron
AAGTTTGGAGGTGGAGGTGG+AGG 0.487859 1.1:+61373467 None:intergenic
TCCATTGGAAAATTGAGGAT+GGG 0.490691 1.1:+61373512 None:intergenic
AAACTTGGCGCCAAGTTTGG+AGG 0.491870 1.1:+61373455 None:intergenic
AGGTGGAGGTTGAAGAGCGA+AGG 0.495518 1.1:+61373481 None:intergenic
AATGGAGTGGGTGAGGGTGA+GGG 0.497870 1.1:+61373537 None:intergenic
TTCCATTGGAAAATTGAGGA+TGG 0.502142 1.1:+61373511 None:intergenic
GTAAAGAGAAAATGAGTTGT+CGG 0.511361 1.1:-61373605 None:intergenic
GTTTCTAGTGAGGATGATGA+AGG 0.517280 1.1:+61373405 None:intergenic
ATCTTCAGTATCAGGACGGT+TGG 0.519070 1.1:+61370769 None:intergenic
TGGGAAAATGGAGTGGGTGA+GGG 0.519803 1.1:+61373531 None:intergenic
AGACGATGAAGGCGCACAGT+TGG 0.532946 1.1:-61373063 MS.gene056040:CDS
CTTGGCGCCAAGTTTGGAGG+TGG 0.536310 1.1:+61373458 None:intergenic
AGGCGCACAGTTGGAGCTCT+GGG 0.537017 1.1:-61373054 MS.gene056040:CDS
CGCCTGTATAGCAAAGATGT+CGG 0.538948 1.1:-61371678 MS.gene056040:CDS
TCCTGATACTGAAGATATTG+AGG 0.543903 1.1:-61370762 MS.gene056040:intron
AGCACCGGCATCTGGAAATA+CGG 0.545922 1.1:+61372469 None:intergenic
GGTGGAGGTTGAAGAGCGAA+GGG 0.546997 1.1:+61373482 None:intergenic
TGGAGCTCTGGGAATTGTCA+AGG 0.547143 1.1:-61373043 MS.gene056040:CDS
CTCGAATTCTTAGACGATGA+AGG 0.553819 1.1:-61373074 MS.gene056040:CDS
TCGGAGACTTACTGGATCAT+CGG 0.565049 1.1:+61372068 None:intergenic
ATCACATAGACTTCATGAAA+CGG 0.569010 1.1:+61370486 None:intergenic
AAGATAAAGACGAAACCGAC+AGG 0.570019 1.1:-61373371 MS.gene056040:intron
AGGGAGAGAGTGTTGTTGAG+TGG 0.580484 1.1:+61373556 None:intergenic
GCCAAGTTTGAGAAATTCCA+AGG 0.586495 1.1:-61373441 MS.gene056040:CDS
AAGGAGGTTCAGGTTCACCT+TGG 0.587647 1.1:+61373424 None:intergenic
TGTTTACCTCCAGACTTGGA+AGG 0.589318 1.1:-61373266 MS.gene056040:CDS
AGTCTGTTTGACAAAGCGGC+AGG 0.600065 1.1:-61370527 MS.gene056040:CDS
GCATCATTTGTATCTTCAGG+AGG 0.601953 1.1:-61373215 MS.gene056040:CDS
AGCCAAGGCCCCTTATCATG+TGG 0.607460 1.1:-61371707 MS.gene056040:CDS
TTGAGGATGGGAAAATGGAG+TGG 0.610141 1.1:+61373524 None:intergenic
CAGCTCTTCTAAAATATCGG+TGG 0.611070 1.1:-61372445 MS.gene056040:CDS
CGTGGATTCCACATGATAAG+GGG 0.614438 1.1:+61371699 None:intergenic
AAAGCCGTATTTCCAGATGC+CGG 0.614566 1.1:-61372473 MS.gene056040:CDS
TGAGGATGGGAAAATGGAGT+GGG 0.615442 1.1:+61373525 None:intergenic
TCGGGGTCGGATATAATGTA+CGG 0.616280 1.1:-61371659 MS.gene056040:CDS
AATACTGCACCAAATGGCAT+AGG 0.619316 1.1:+61371203 None:intergenic
TCGTCTAAGAATTCGAGTTG+AGG 0.622785 1.1:+61373080 None:intergenic
TGTAGACAGTGGTGATGAGA+TGG 0.623609 1.1:-61372154 MS.gene056040:CDS
ACATCTTTGCTATACAGGCG+TGG 0.625104 1.1:+61371681 None:intergenic
TATAGCAAAGATGTCGGGGT+CGG 0.629850 1.1:-61371672 MS.gene056040:CDS
TCCTGAAGATACAAATGATG+CGG 0.639331 1.1:+61373217 None:intergenic
ACAAAGTCTGTTTGACAAAG+CGG 0.639727 1.1:-61370531 MS.gene056040:CDS
CATCATTTGTATCTTCAGGA+GGG 0.641311 1.1:-61373214 MS.gene056040:CDS
AGACAGTGGTGATGAGATGG+TGG 0.647426 1.1:-61372151 MS.gene056040:CDS
TCTAGTGAGGATGATGAAGG+AGG 0.648033 1.1:+61373408 None:intergenic
GAAGAACAGAAACCAGAGCA+AGG 0.653627 1.1:-61370554 MS.gene056040:CDS
CAATATCTTCAGTATCAGGA+CGG 0.662055 1.1:+61370765 None:intergenic
TGTAATGATAGTTTCTAGTG+AGG 0.671448 1.1:+61373395 None:intergenic
CCTGTATAGCAAAGATGTCG+GGG 0.673720 1.1:-61371676 MS.gene056040:CDS
GAAAGTGTTCAGTGATGACA+AGG 0.693169 1.1:-61370828 MS.gene056040:CDS
ACTGCACCTTCCAAGTCTGG+AGG 0.699886 1.1:+61373260 None:intergenic
GATCGAAAGCTTGTAGACAG+TGG 0.729914 1.1:-61372165 MS.gene056040:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAAAAATATAAATGACAA+GGG - chr1.1:61372204-61372223 MS.gene056040:intron 10.0%
!! TTAAAAAAATATAAATGACA+AGG - chr1.1:61372203-61372222 MS.gene056040:intron 10.0%
!!! TACATTTTATTTTGAATAAT+TGG - chr1.1:61372779-61372798 MS.gene056040:intron 10.0%
!! TAAATGATTAAGGTTATTAT+AGG + chr1.1:61371344-61371363 None:intergenic 15.0%
!! TTAAAAAAAAGGAAGAATAA+TGG + chr1.1:61373426-61373445 None:intergenic 15.0%
!!! AATGAAGTATTAAATGATTA+AGG + chr1.1:61371354-61371373 None:intergenic 15.0%
!!! TGATGTTTCTATTAAAAAAA+AGG + chr1.1:61373437-61373456 None:intergenic 15.0%
!! AACGATATATACATAGAAAA+TGG + chr1.1:61373390-61373409 None:intergenic 20.0%
!! AATAGACAAGAAATAATAGA+TGG + chr1.1:61373214-61373233 None:intergenic 20.0%
!! AGTGAAAGAAAAAGATATAT+TGG + chr1.1:61370922-61370941 None:intergenic 20.0%
!! ATATAATAATCCTTATGGTA+GGG + chr1.1:61372938-61372957 None:intergenic 20.0%
!! ATGTATATATCGTTATAGTT+GGG - chr1.1:61373396-61373415 MS.gene056040:CDS 20.0%
!! CAATGCAAATAAAAATATAC+AGG + chr1.1:61371833-61371852 None:intergenic 20.0%
!! CATGTATATAATAATCCTTA+TGG + chr1.1:61372943-61372962 None:intergenic 20.0%
!! TAAATATATAGGGGTAATAT+AGG - chr1.1:61371396-61371415 MS.gene056040:intron 20.0%
!! TATATAATAATCCTTATGGT+AGG + chr1.1:61372939-61372958 None:intergenic 20.0%
!! TATGTATATATCGTTATAGT+TGG - chr1.1:61373395-61373414 MS.gene056040:CDS 20.0%
!! TCAAAATGTGACAATTAAAA+AGG + chr1.1:61371258-61371277 None:intergenic 20.0%
!! TTTATAAGTAATATCTAGCA+AGG + chr1.1:61373366-61373385 None:intergenic 20.0%
!!! AATAAAAGTATTTGTTGTCT+TGG + chr1.1:61371294-61371313 None:intergenic 20.0%
!!! ATTATTTCTTGTCTATTTTC+TGG - chr1.1:61373217-61373236 MS.gene056040:CDS 20.0%
!!! ATTTTTCTTATGCTTGTTTT+TGG + chr1.1:61373075-61373094 None:intergenic 20.0%
!!! CCATTTTTAATATAAGATCA+GGG + chr1.1:61371141-61371160 None:intergenic 20.0%
!!! TCCATTTTTAATATAAGATC+AGG + chr1.1:61371142-61371161 None:intergenic 20.0%
!!! TTTGTTATTTCTTCTCTTTT+CGG - chr1.1:61372624-61372643 MS.gene056040:intron 20.0%
!!! TTTTAACTCTATTCTTATGT+GGG + chr1.1:61372189-61372208 None:intergenic 20.0%
!!! TTTTTAACTCTATTCTTATG+TGG + chr1.1:61372190-61372209 None:intergenic 20.0%
!!! TTTTTCTTATGCTTGTTTTT+GGG + chr1.1:61373074-61373093 None:intergenic 20.0%
! AAAGATATATTGGAAGTAGT+TGG + chr1.1:61370912-61370931 None:intergenic 25.0%
! AACATGTACAGTTATTTGTT+CGG - chr1.1:61371877-61371896 MS.gene056040:intron 25.0%
! AAGTCAAAATCATTTACAGA+CGG + chr1.1:61373150-61373169 None:intergenic 25.0%
! AAGTGACAATTATAAAGGAA+CGG - chr1.1:61371488-61371507 MS.gene056040:intron 25.0%
! AATGATATAAGTTAGTAGTC+TGG + chr1.1:61372820-61372839 None:intergenic 25.0%
! ACCCTACTGATAAAAAATTA+GGG - chr1.1:61371161-61371180 MS.gene056040:intron 25.0%
! CAAAAGACTTTAGATATGTT+TGG - chr1.1:61372493-61372512 MS.gene056040:intron 25.0%
! CCCTGATCTTATATTAAAAA+TGG - chr1.1:61371138-61371157 MS.gene056040:intron 25.0%
! CTCTCTGCAATAAATATATA+GGG - chr1.1:61371386-61371405 MS.gene056040:intron 25.0%
! TATAATAATCCTTATGGTAG+GGG + chr1.1:61372937-61372956 None:intergenic 25.0%
! TATTAAAACACAAGAATGCA+TGG + chr1.1:61372319-61372338 None:intergenic 25.0%
! TATTCAAGAAACTAAATGTC+AGG - chr1.1:61371078-61371097 MS.gene056040:intron 25.0%
! TATTCATATATTTACAGCCA+AGG - chr1.1:61372359-61372378 MS.gene056040:intron 25.0%
! TCTCTCTGCAATAAATATAT+AGG - chr1.1:61371385-61371404 MS.gene056040:intron 25.0%
! TCTCTGCAATAAATATATAG+GGG - chr1.1:61371387-61371406 MS.gene056040:intron 25.0%
! TGCAAAAGTGACAATTATAA+AGG - chr1.1:61371483-61371502 MS.gene056040:intron 25.0%
! TTAACAACCATCTTAATTAC+AGG - chr1.1:61370964-61370983 MS.gene056040:intron 25.0%
! TTTGCAAGCAAATATCTATT+TGG + chr1.1:61373284-61373303 None:intergenic 25.0%
!! ACATAAAGCATTAATCAATG+TGG + chr1.1:61371698-61371717 None:intergenic 25.0%
!! GTTCAAAGTATCATTAAATG+TGG + chr1.1:61371427-61371446 None:intergenic 25.0%
!! TATTCTAACATTTGATGATC+AGG + chr1.1:61371967-61371986 None:intergenic 25.0%
!! TGTATGATTGTCTGAAATTT+AGG + chr1.1:61372598-61372617 None:intergenic 25.0%
!!! AGTTAAGGCAATACTTTTTA+AGG - chr1.1:61372446-61372465 MS.gene056040:CDS 25.0%
!!! CAAACATATCTAAAGTCTTT+TGG + chr1.1:61372495-61372514 None:intergenic 25.0%
AAACTAAATGTCAGGTTAGT+GGG - chr1.1:61371086-61371105 MS.gene056040:intron 30.0%
AGCATAAGAAAAATCACTGT+TGG - chr1.1:61373081-61373100 MS.gene056040:CDS 30.0%
AGGGGTAATAAGAGATAATT+TGG - chr1.1:61371180-61371199 MS.gene056040:intron 30.0%
AGTTCAACCTGTAATTAAGA+TGG + chr1.1:61370974-61370993 None:intergenic 30.0%
ATCACTGTTGGATTTAAAAG+TGG - chr1.1:61373093-61373112 MS.gene056040:CDS 30.0%
ATTCTCAAGTGAAACGAAAA+AGG + chr1.1:61371783-61371802 None:intergenic 30.0%
ATTCTTCCATTGGAAAATTG+AGG + chr1.1:61370577-61370596 None:intergenic 30.0%
CCCTACTGATAAAAAATTAG+GGG - chr1.1:61371162-61371181 MS.gene056040:intron 30.0%
CTAGCAATAGATAAATTCTG+AGG - chr1.1:61372694-61372713 MS.gene056040:intron 30.0%
GACAATTAAAAAGGAACAGA+GGG + chr1.1:61371249-61371268 None:intergenic 30.0%
GACCCTACTGATAAAAAATT+AGG - chr1.1:61371160-61371179 MS.gene056040:intron 30.0%
GATGGTTGTTAAAAATTGAG+TGG + chr1.1:61370956-61370975 None:intergenic 30.0%
GTAGTAATACTAATACCTGT+CGG + chr1.1:61370728-61370747 None:intergenic 30.0%
TGACAATTAAAAAGGAACAG+AGG + chr1.1:61371250-61371269 None:intergenic 30.0%
TGTTAAAAATTGAGTGGAAG+CGG + chr1.1:61370950-61370969 None:intergenic 30.0%
TTCACATTTCTATCATGATG+AGG + chr1.1:61372130-61372149 None:intergenic 30.0%
! TAAAGCATTAATCAATGTGG+TGG + chr1.1:61371695-61371714 None:intergenic 30.0%
!! TAGTTTTTCAACTGTTAACC+AGG - chr1.1:61372550-61372569 MS.gene056040:intron 30.0%
!! TCTTTTGGAAAGAAATAGCT+TGG + chr1.1:61372480-61372499 None:intergenic 30.0%
!! TGTAATGATAGTTTCTAGTG+AGG + chr1.1:61370689-61370708 None:intergenic 30.0%
!!! ACCCCTAATTTTTTATCAGT+AGG + chr1.1:61371166-61371185 None:intergenic 30.0%
!!! ATGCTTTGTTTTGTTTTGCA+AGG - chr1.1:61371663-61371682 MS.gene056040:CDS 30.0%
!!! ATTTTCTGGTTTTCAGATTG+TGG - chr1.1:61373231-61373250 MS.gene056040:CDS 30.0%
!!! CCCCTAATTTTTTATCAGTA+GGG + chr1.1:61371165-61371184 None:intergenic 30.0%
AAATAACATCTGCGCAACAT+AGG + chr1.1:61373498-61373517 None:intergenic 35.0%
AACTAAATGTCAGGTTAGTG+GGG - chr1.1:61371087-61371106 MS.gene056040:intron 35.0%
ACAAAGTCTGTTTGACAAAG+CGG - chr1.1:61373550-61373569 MS.gene056040:CDS 35.0%
ACCTCAATATCTTCAGTATC+AGG + chr1.1:61373323-61373342 None:intergenic 35.0%
ACCTTGGAATTTCTCAAACT+TGG + chr1.1:61370644-61370663 None:intergenic 35.0%
ACGAAAAAGGAAGAATTCAG+TGG + chr1.1:61371770-61371789 None:intergenic 35.0%
ATACTATGCAGAGTTAACCA+TGG + chr1.1:61373039-61373058 None:intergenic 35.0%
CAAGAATCTCCAACAGAAAA+TGG + chr1.1:61372062-61372081 None:intergenic 35.0%
CAATATCTTCAGTATCAGGA+CGG + chr1.1:61373319-61373338 None:intergenic 35.0%
CATCATTTGTATCTTCAGGA+GGG - chr1.1:61370867-61370886 MS.gene056040:intron 35.0%
CGTTTCACTTGAGAATTTGA+TGG - chr1.1:61371787-61371806 MS.gene056040:intron 35.0%
CTATAATGCAGAGTTAACCA+TGG + chr1.1:61373009-61373028 None:intergenic 35.0%
CTATCTGAAAATTACGAGCA+AGG + chr1.1:61372979-61372998 None:intergenic 35.0%
GAAAATTGAGGATGGGAAAA+TGG + chr1.1:61370565-61370584 None:intergenic 35.0%
GAAACTAAATGTCAGGTTAG+TGG - chr1.1:61371085-61371104 MS.gene056040:intron 35.0%
GAAGTAGTTGGAACATACAA+TGG + chr1.1:61370900-61370919 None:intergenic 35.0%
GACAATTATAAAGGAACGGA+GGG - chr1.1:61371492-61371511 MS.gene056040:intron 35.0%
GAGCTCTGTTCTATCTTTAA+CGG - chr1.1:61372034-61372053 MS.gene056040:intron 35.0%
GATATAATGTACGGCAGTTA+AGG - chr1.1:61372431-61372450 MS.gene056040:CDS 35.0%
GTTAAAGATAGAACAGAGCT+CGG + chr1.1:61372035-61372054 None:intergenic 35.0%
TATGTTGCGCAGATGTTATT+TGG - chr1.1:61373497-61373516 MS.gene056040:CDS 35.0%
TCCATTGGAAAATTGAGGAT+GGG + chr1.1:61370572-61370591 None:intergenic 35.0%
TCCTGAAGATACAAATGATG+CGG + chr1.1:61370867-61370886 None:intergenic 35.0%
TCCTGATACTGAAGATATTG+AGG - chr1.1:61373319-61373338 MS.gene056040:intron 35.0%
TGACAATTATAAAGGAACGG+AGG - chr1.1:61371491-61371510 MS.gene056040:intron 35.0%
TGCAGTAATACAATCAAGTC+AGG - chr1.1:61370838-61370857 MS.gene056040:intron 35.0%
TTACTCTGACAAAATAGCTG+CGG - chr1.1:61371731-61371750 MS.gene056040:intron 35.0%
TTCCATTGGAAAATTGAGGA+TGG + chr1.1:61370573-61370592 None:intergenic 35.0%
! AATTCCATCAAGTTGTCACA+TGG + chr1.1:61372106-61372125 None:intergenic 35.0%
! TTAACGGAACCATTTTCTGT+TGG - chr1.1:61372050-61372069 MS.gene056040:intron 35.0%
!! AGCAAATTTGCTAGATCACT+TGG - chr1.1:61373459-61373478 MS.gene056040:CDS 35.0%
!! CTGCAGCTCTTCTAAAATAT+CGG - chr1.1:61371633-61371652 MS.gene056040:intron 35.0%
AAGATAAAGACGAAACCGAC+AGG - chr1.1:61370710-61370729 MS.gene056040:intron 40.0%
AATAATCCTTATGGTAGGGG+AGG + chr1.1:61372934-61372953 None:intergenic 40.0%
AATACTGCACCAAATGGCAT+AGG + chr1.1:61372881-61372900 None:intergenic 40.0%
ACCGCATCATTTGTATCTTC+AGG - chr1.1:61370863-61370882 MS.gene056040:intron 40.0%
ACTGTTAACCAGGTGCATAA+TGG - chr1.1:61372560-61372579 MS.gene056040:intron 40.0%
AGGACAGAATTGTATCAGCA+TGG + chr1.1:61371813-61371832 None:intergenic 40.0%
ATAATCCTTATGGTAGGGGA+GGG + chr1.1:61372933-61372952 None:intergenic 40.0%
CAAGTTGCAAATGCACGTTT+GGG - chr1.1:61372519-61372538 MS.gene056040:intron 40.0%
CCAACTATGTGCGAATTTCA+CGG + chr1.1:61373126-61373145 None:intergenic 40.0%
CTCGAATTCTTAGACGATGA+AGG - chr1.1:61371007-61371026 MS.gene056040:intron 40.0%
GAATGATACCATTATGCACC+TGG + chr1.1:61372571-61372590 None:intergenic 40.0%
GCATCATTTGTATCTTCAGG+AGG - chr1.1:61370866-61370885 MS.gene056040:intron 40.0%
GCCAAGTTTGAGAAATTCCA+AGG - chr1.1:61370640-61370659 MS.gene056040:intron 40.0%
TGCATTATAGTCTGCATCCA+TGG - chr1.1:61373019-61373038 MS.gene056040:CDS 40.0%
TTTCAGATAGTCTGCATCCA+TGG - chr1.1:61372989-61373008 MS.gene056040:intron 40.0%
! GGAATTGTCAAGGCTTTTCT+TGG - chr1.1:61371048-61371067 MS.gene056040:intron 40.0%
! TCAAGTTGCAAATGCACGTT+TGG - chr1.1:61372518-61372537 MS.gene056040:intron 40.0%
! TCCCATCCTCAATTTTCCAA+TGG - chr1.1:61370568-61370587 MS.gene056040:CDS 40.0%
!! CAGCTCTTCTAAAATATCGG+TGG - chr1.1:61371636-61371655 MS.gene056040:CDS 40.0%
!! GAAAGTGTTCAGTGATGACA+AGG - chr1.1:61373253-61373272 MS.gene056040:CDS 40.0%
!! GTTTCTAGTGAGGATGATGA+AGG + chr1.1:61370679-61370698 None:intergenic 40.0%
!! TAGCAAGGTATTGAAGACGA+AGG + chr1.1:61373351-61373370 None:intergenic 40.0%
!! TCGTCTAAGAATTCGAGTTG+AGG + chr1.1:61371004-61371023 None:intergenic 40.0%
!! TGCAGTATTTCGGTGTTATC+CGG - chr1.1:61372892-61372911 MS.gene056040:intron 40.0%
!! TGCCATTTGGTGCAGTATTT+CGG - chr1.1:61372882-61372901 MS.gene056040:intron 40.0%
!!! GCTTGTTTTTGGGTGATCTA+GGG + chr1.1:61373064-61373083 None:intergenic 40.0%
!!! TGCTTGTTTTTGGGTGATCT+AGG + chr1.1:61373065-61373084 None:intergenic 40.0%
AAAGCCGTATTTCCAGATGC+CGG - chr1.1:61371608-61371627 MS.gene056040:intron 45.0%
AACAGACTTTGTCCTTGCTC+TGG + chr1.1:61373542-61373561 None:intergenic 45.0%
AAGGAACGGAGGGAGTAATT+TGG - chr1.1:61371502-61371521 MS.gene056040:intron 45.0%
ACAGCCATGTGACAACTTGA+TGG - chr1.1:61372099-61372118 MS.gene056040:CDS 45.0%
ATCAGGGCCTCCAATTTGAT+TGG + chr1.1:61371125-61371144 None:intergenic 45.0%
ATCTTCAGTATCAGGACGGT+TGG + chr1.1:61373315-61373334 None:intergenic 45.0%
ATTACTGCACCTTCCAAGTC+TGG + chr1.1:61370827-61370846 None:intergenic 45.0%
CACCGAAATACTGCACCAAA+TGG + chr1.1:61372887-61372906 None:intergenic 45.0%
CAGTTGTTTACCTCCAGACT+TGG - chr1.1:61370811-61370830 MS.gene056040:CDS 45.0%
CATATGCGACCTATGCCATT+TGG - chr1.1:61372869-61372888 MS.gene056040:intron 45.0%
CCGTGAAATTCGCACATAGT+TGG - chr1.1:61373123-61373142 MS.gene056040:intron 45.0%
CCTGTATAGCAAAGATGTCG+GGG - chr1.1:61372405-61372424 MS.gene056040:intron 45.0%
CGCCTGTATAGCAAAGATGT+CGG - chr1.1:61372403-61372422 MS.gene056040:intron 45.0%
CGTCATCCCAATCAAATTGG+AGG - chr1.1:61371115-61371134 MS.gene056040:intron 45.0%
CGTGGATTCCACATGATAAG+GGG + chr1.1:61372385-61372404 None:intergenic 45.0%
CTGCGTCATCCCAATCAAAT+TGG - chr1.1:61371112-61371131 MS.gene056040:intron 45.0%
GAAGAACAGAAACCAGAGCA+AGG - chr1.1:61373527-61373546 MS.gene056040:CDS 45.0%
GATCGAAAGCTTGTAGACAG+TGG - chr1.1:61371916-61371935 MS.gene056040:intron 45.0%
GCCTGTATAGCAAAGATGTC+GGG - chr1.1:61372404-61372423 MS.gene056040:intron 45.0%
GCGAAGGGAAATTCTTCCAT+TGG + chr1.1:61370587-61370606 None:intergenic 45.0%
GCGTGGATTCCACATGATAA+GGG + chr1.1:61372386-61372405 None:intergenic 45.0%
TAATCCTTATGGTAGGGGAG+GGG + chr1.1:61372932-61372951 None:intergenic 45.0%
TATAGCAAAGATGTCGGGGT+CGG - chr1.1:61372409-61372428 MS.gene056040:intron 45.0%
TCAGGGCCTCCAATTTGATT+GGG + chr1.1:61371124-61371143 None:intergenic 45.0%
TCGGAGACTTACTGGATCAT+CGG + chr1.1:61372016-61372035 None:intergenic 45.0%
TCGGGGTCGGATATAATGTA+CGG - chr1.1:61372422-61372441 MS.gene056040:CDS 45.0%
TCTAGTGAGGATGATGAAGG+AGG + chr1.1:61370676-61370695 None:intergenic 45.0%
TGAGGATGGGAAAATGGAGT+GGG + chr1.1:61370559-61370578 None:intergenic 45.0%
TGTTTACCTCCAGACTTGGA+AGG - chr1.1:61370815-61370834 MS.gene056040:CDS 45.0%
TTGAGGATGGGAAAATGGAG+TGG + chr1.1:61370560-61370579 None:intergenic 45.0%
TTGCAAATGCACGTTTGGGT+AGG - chr1.1:61372523-61372542 MS.gene056040:intron 45.0%
! ACATCTTTGCTATACAGGCG+TGG + chr1.1:61372403-61372422 None:intergenic 45.0%
! TGTAGACAGTGGTGATGAGA+TGG - chr1.1:61371927-61371946 MS.gene056040:intron 45.0%
!! AGAGTGTTGTTGAGTGGAAC+TGG + chr1.1:61370522-61370541 None:intergenic 45.0%
!! TTTCGGTGTTATCCGGAGTA+AGG - chr1.1:61372899-61372918 MS.gene056040:intron 45.0%
!! TTTTAGAAGAGCTGCAGCAC+CGG + chr1.1:61371630-61371649 None:intergenic 45.0%
AAACTTGGCGCCAAGTTTGG+AGG + chr1.1:61370629-61370648 None:intergenic 50.0%
AACAGAGCTCGGAGACTTAC+TGG + chr1.1:61372024-61372043 None:intergenic 50.0%
AGGGGAAAAAGGCCTTACTC+CGG + chr1.1:61372914-61372933 None:intergenic 50.0%
AGTCTGTTTGACAAAGCGGC+AGG - chr1.1:61373554-61373573 MS.gene056040:CDS 50.0%
ATGGGAAAATGGAGTGGGTG+AGG + chr1.1:61370554-61370573 None:intergenic 50.0%
CTCAAACTTGGCGCCAAGTT+TGG + chr1.1:61370632-61370651 None:intergenic 50.0%
GAGGATGATGAAGGAGGTTC+AGG + chr1.1:61370670-61370689 None:intergenic 50.0%
GGCGTGGATTCCACATGATA+AGG + chr1.1:61372387-61372406 None:intergenic 50.0%
TATGGTAGGGGAGGGGAAAA+AGG + chr1.1:61372925-61372944 None:intergenic 50.0%
TGGGAAAATGGAGTGGGTGA+GGG + chr1.1:61370553-61370572 None:intergenic 50.0%
TTCCACATGATAAGGGGCCT+TGG + chr1.1:61372379-61372398 None:intergenic 50.0%
! AAGGAGGTTCAGGTTCACCT+TGG + chr1.1:61370660-61370679 None:intergenic 50.0%
! AGACAGTGGTGATGAGATGG+TGG - chr1.1:61371930-61371949 MS.gene056040:intron 50.0%
! CCCCGACATCTTTGCTATAC+AGG + chr1.1:61372408-61372427 None:intergenic 50.0%
! TTTTCCCCTCCCCTACCATA+AGG - chr1.1:61372925-61372944 MS.gene056040:intron 50.0%
!! AGCACCGGCATCTGGAAATA+CGG + chr1.1:61371615-61371634 None:intergenic 50.0%
!! AGGGAGAGAGTGTTGTTGAG+TGG + chr1.1:61370528-61370547 None:intergenic 50.0%
!! TGGAGCTCTGGGAATTGTCA+AGG - chr1.1:61371038-61371057 MS.gene056040:intron 50.0%
AAATGGAGTGGGTGAGGGTG+AGG + chr1.1:61370548-61370567 None:intergenic 55.0%
AAGTTTGGAGGTGGAGGTGG+AGG + chr1.1:61370617-61370636 None:intergenic 55.0%
AATGGAGTGGGTGAGGGTGA+GGG + chr1.1:61370547-61370566 None:intergenic 55.0%
ACTGCACCTTCCAAGTCTGG+AGG + chr1.1:61370824-61370843 None:intergenic 55.0%
AGCCAAGGCCCCTTATCATG+TGG - chr1.1:61372374-61372393 MS.gene056040:intron 55.0%
AGGTGGAGGTTGAAGAGCGA+AGG + chr1.1:61370603-61370622 None:intergenic 55.0%
GGTGGAGGTTGAAGAGCGAA+GGG + chr1.1:61370602-61370621 None:intergenic 55.0%
TCCACCTCCACCTCCAAACT+TGG - chr1.1:61370616-61370635 MS.gene056040:intron 55.0%
! AGACGATGAAGGCGCACAGT+TGG - chr1.1:61371018-61371037 MS.gene056040:intron 55.0%
! AGCGGCAGGCGTTTTCTCTT+CGG - chr1.1:61373568-61373587 MS.gene056040:CDS 55.0%
AAGGCGCACAGTTGGAGCTC+TGG - chr1.1:61371026-61371045 MS.gene056040:intron 60.0%
AGGCGCACAGTTGGAGCTCT+GGG - chr1.1:61371027-61371046 MS.gene056040:intron 60.0%
CTTGGCGCCAAGTTTGGAGG+TGG + chr1.1:61370626-61370645 None:intergenic 60.0%
GCCAAGTTTGGAGGTGGAGG+TGG + chr1.1:61370620-61370639 None:intergenic 60.0%
GGCGCCAAGTTTGGAGGTGG+AGG + chr1.1:61370623-61370642 None:intergenic 65.0%
!! AGAGCTGCAGCACCGGCATC+TGG + chr1.1:61371623-61371642 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr1.1 gene 61370487 61373616 61370487 ID=MS.gene056040
chr1.1 mRNA 61370487 61373616 61370487 ID=MS.gene056040.t1;Parent=MS.gene056040
chr1.1 exon 61373372 61373616 61373372 ID=MS.gene056040.t1.exon1;Parent=MS.gene056040.t1
chr1.1 CDS 61373372 61373616 61373372 ID=cds.MS.gene056040.t1;Parent=MS.gene056040.t1
chr1.1 exon 61373202 61373289 61373202 ID=MS.gene056040.t1.exon2;Parent=MS.gene056040.t1
chr1.1 CDS 61373202 61373289 61373202 ID=cds.MS.gene056040.t1;Parent=MS.gene056040.t1
chr1.1 exon 61373004 61373117 61373004 ID=MS.gene056040.t1.exon3;Parent=MS.gene056040.t1
chr1.1 CDS 61373004 61373117 61373004 ID=cds.MS.gene056040.t1;Parent=MS.gene056040.t1
chr1.1 exon 61372419 61372501 61372419 ID=MS.gene056040.t1.exon4;Parent=MS.gene056040.t1
chr1.1 CDS 61372419 61372501 61372419 ID=cds.MS.gene056040.t1;Parent=MS.gene056040.t1
chr1.1 exon 61372080 61372194 61372080 ID=MS.gene056040.t1.exon5;Parent=MS.gene056040.t1
chr1.1 CDS 61372080 61372194 61372080 ID=cds.MS.gene056040.t1;Parent=MS.gene056040.t1
chr1.1 exon 61371636 61371727 61371636 ID=MS.gene056040.t1.exon6;Parent=MS.gene056040.t1
chr1.1 CDS 61371636 61371727 61371636 ID=cds.MS.gene056040.t1;Parent=MS.gene056040.t1
chr1.1 exon 61371188 61371253 61371188 ID=MS.gene056040.t1.exon7;Parent=MS.gene056040.t1
chr1.1 CDS 61371188 61371253 61371188 ID=cds.MS.gene056040.t1;Parent=MS.gene056040.t1
chr1.1 exon 61370763 61370856 61370763 ID=MS.gene056040.t1.exon8;Parent=MS.gene056040.t1
chr1.1 CDS 61370763 61370856 61370763 ID=cds.MS.gene056040.t1;Parent=MS.gene056040.t1
chr1.1 exon 61370487 61370594 61370487 ID=MS.gene056040.t1.exon9;Parent=MS.gene056040.t1
chr1.1 CDS 61370487 61370594 61370487 ID=cds.MS.gene056040.t1;Parent=MS.gene056040.t1
Gene Sequence

>MS.gene056040

ATGAGTTGTCGGAGCTTAACTTGCTGCAACATCCAGTTCCACTCAACAACACTCTCTCCCTCACCCTCACCCACTCCATTTTCCCATCCTCAATTTTCCAATGGAAGAATTTCCCTTCGCTCTTCAACCTCCACCTCCACCTCCAAACTTGGCGCCAAGTTTGAGAAATTCCAAGGTGAACCTGAACCTCCTTCATCATCCTCACTAGAAACTATCATTACACAAGATAAAGACGAAACCGACAGGTATTAGTATTACTACTACTTTACAATCTTCATACAATCAATTTTACTAATATTTATTTGAAATCTGTTATGTATGTTTCAGTTGTTTACCTCCAGACTTGGAAGGTGCAGTAATACAATCAAGTCAGGCTACCGCATCATTTGTATCTTCAGGAGGGATGAGAGCCATTGTATGTTCCAACTACTTCCAATATATCTTTTTCTTTCACTTCATGCCGCTTCCACTCAATTTTTAACAACCATCTTAATTACAGGTTGAACTTTTAATTCCTCAACTCGAATTCTTAGACGATGAAGGCGCACAGTTGGAGCTCTGGGAATTGTCAAGGCTTTTCTTGGATACACTTATTCAAGAAACTAAATGTCAGGTTAGTGGGGTGCTGCGTCATCCCAATCAAATTGGAGGCCCTGATCTTATATTAAAAATGGACCCTACTGATAAAAAATTAGGGGTAATAAGAGATAATTTGGATGAGTTTGATTGTTAGAAAGTTAATTTGTAATAAGAGATACTCCCTCTGTTCCTTTTTAATTGTCACATTTTGACTTTTTACACAAACCAAGACAACAAATACTTTTATTACTTTTGATATAACAATTTATCTTTTTCCTATAATAACCTTAATCATTTAATACTTCATTTCATACATTTCTCTCTCTGCAATAAATATATAGGGGTAATATAGGTAAAACCACATTTAATGATACTTTGAACTTTGAAAACGACAGTTATTTAGAAACAAAAATTTTATGCAAAAGTGACAATTATAAAGGAACGGAGGGAGTAATTTGGTTTTATGATGTGTATGTTAATACATATATTGTATAAGTTGAAACTCAGTTGCTAAGTTTCATGACTTTGATTGTTAGAAAGTTAAAGCCGTATTTCCAGATGCCGGTGCTGCAGCTCTTCTAAAATATCGGTGGAAAGATGCTTTGTTTTGTTTTGCAAGGTGACTGCCACCACATTGATTAATGCTTTATGTTTTCTTTTGTTGTTTACTCTGACAAAATAGCTGCGGACTATACTTCTAACCACTGAATTCTTCCTTTTTCGTTTCACTTGAGAATTTGATGGCCATGCTGATACAATTCTGTCCTGTATATTTTTATTTGCATTGTATTTATTGTCATGCTATAGTTATAACATGTACAGTTATTTGTTCGGTTTTTTCAGCTTAAGTGATCGAAAGCTTGTAGACAGTGGTGATGAGATGGTGGTTATGATTGTTCCTGATCATCAAATGTTAGAATATGTAGAGAAAATTGCATCTACTCTCTCCGATGATCCAGTAAGTCTCCGAGCTCTGTTCTATCTTTAACGGAACCATTTTCTGTTGGAGATTCTTGTGATATCTGAAATTTAAACAGCCATGTGACAACTTGATGGAATTTCCTCATCATGATAGAAATGTGAAAGCTTTTTATATGTGTCATTGATTCTAATTCAGTGACCCACATAAGAATAGAGTTAAAAAAATATAAATGACAAGGGTTTCAGAACTAATGATATTTCTCATATTTGTCATTCTTGAGAGCAAAATAGACTGCAAGATATTCACTTTGCATCAAGTTTAGAAATTTCCATGCATTCTTGTGTTTTAATATTTATAATTTTCATACAAACTATTCATATATTTACAGCCAAGGCCCCTTATCATGTGGAATCCACGCCTGTATAGCAAAGATGTCGGGGTCGGATATAATGTACGGCAGTTAAGGCAATACTTTTTAAGGTATGCTTTCCAAGCTATTTCTTTCCAAAAGACTTTAGATATGTTTGGTTTCAAGTTGCAAATGCACGTTTGGGTAGGTATATAGTTTTTCAACTGTTAACCAGGTGCATAATGGTATCATTCACTTCCTAAATTTCAGACAATCATACATTTGTTTTTGTTATTTCTTCTCTTTTCGGACAATCATACATTTGTTTATGTCTTTTTAAGTTATATAACAGAGTAGCTAGCAATAGATAAATTCTGAGGTTCACTTCAAGTTAGTAACTTATTGTTCATTGAATAAGAATTCATTTCTTATGCTTTCTGAATACATTTTATTTTGAATAATTGGTTTATTCTGATTAATCCAGACTACTAACTTATATCATTTGATGTACAGCACTTTTACAACTGTCTATCATATGCGACCTATGCCATTTGGTGCAGTATTTCGGTGTTATCCGGAGTAAGGCCTTTTTCCCCTCCCCTACCATAAGGATTATTATATACATGAATAACAAACAATCCTTGCTCGTAATTTTCAGATAGTCTGCATCCATGGTTAACTCTGCATTATAGTCTGCATCCATGGTTAACTCTGCATAGTATAACCCTAGATCACCCAAAAACAAGCATAAGAAAAATCACTGTTGGATTTAAAAGTGGATCAAATCCGTGAAATTCGCACATAGTTGGACCGTCTGTAAATGATTTTGACTTGCGATAATTGTCTGCATGAAATATAAATTGTAAAGCTCAAACCATCTATTATTTCTTGTCTATTTTCTGGTTTTCAGATTGTGGAAAGTGTTCAGTGATGACAAGGATAAGCCAAATAGATATTTGCTTGCAAAAGAATATGCCAACCGTCCTGATACTGAAGATATTGAGGTTAGTACCTTCGTCTTCAATACCTTGCTAGATATTACTTATAAAACCATTTTCTATGTATATATCGTTATAGTTGGGATAGCCATTATTCTTCCTTTTTTTTAATAGAAACATCAACAGCAAATTTGCTAGATCACTTGGCATTCATATACTGCCTATGTTGCGCAGATGTTATTTGGCAACAACGAAGAACAGAAACCAGAGCAAGGACAAAGTCTGTTTGACAAAGCGGCAGGCGTTTTCTCTTCGGTTAACCGTTTCATGAAGTCTATGTGA

Protein sequence

>MS.gene056040.t1

MSCRSLTCCNIQFHSTTLSPSPSPTPFSHPQFSNGRISLRSSTSTSTSKLGAKFEKFQGEPEPPSSSSLETIITQDKDETDSCLPPDLEGAVIQSSQATASFVSSGGMRAIVELLIPQLEFLDDEGAQLELWELSRLFLDTLIQETKCQKVKAVFPDAGAAALLKYRWKDALFCFASLSDRKLVDSGDEMVVMIVPDHQMLEYVEKIASTLSDDPPRPLIMWNPRLYSKDVGVGYNVRQLRQYFLSTFTTVYHMRPMPFGAVFRCYPELWKVFSDDKDKPNRYLLAKEYANRPDTEDIEMLFGNNEEQKPEQGQSLFDKAAGVFSSVNRFMKSM