Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77512.t1 | XP_003601648.1 | 98.4 | 382 | 6 | 0 | 3 | 384 | 8 | 389 | 2.80E-217 | 764.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77512.t1 | P51081 | 95.5 | 382 | 17 | 0 | 3 | 384 | 8 | 389 | 1.5e-214 | 746.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77512.t1 | G7JA71 | 98.4 | 382 | 6 | 0 | 3 | 384 | 8 | 389 | 2.0e-217 | 764.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene05015 | MS.gene77512 | 0.802284 | 6.04E-49 | -1.69E-46 |
| MS.gene052053 | MS.gene77512 | 0.831523 | 1.59E-55 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77512.t1 | MTR_3g083920 | 98.429 | 382 | 6 | 0 | 3 | 384 | 8 | 389 | 0.0 | 782 |
| MS.gene77512.t1 | MTR_3g083910 | 94.241 | 382 | 22 | 0 | 3 | 384 | 8 | 389 | 0.0 | 757 |
| MS.gene77512.t1 | MTR_5g007713 | 90.814 | 381 | 35 | 0 | 3 | 383 | 8 | 388 | 0.0 | 737 |
| MS.gene77512.t1 | MTR_5g007717 | 90.289 | 381 | 37 | 0 | 3 | 383 | 8 | 388 | 0.0 | 736 |
| MS.gene77512.t1 | MTR_1g098140 | 90.814 | 381 | 35 | 0 | 3 | 383 | 8 | 388 | 0.0 | 736 |
| MS.gene77512.t1 | MTR_7g016800 | 90.551 | 381 | 36 | 0 | 3 | 383 | 8 | 388 | 0.0 | 733 |
| MS.gene77512.t1 | MTR_7g016720 | 90.814 | 381 | 35 | 0 | 3 | 383 | 8 | 388 | 0.0 | 733 |
| MS.gene77512.t1 | MTR_7g016820 | 90.551 | 381 | 36 | 0 | 3 | 383 | 8 | 388 | 0.0 | 732 |
| MS.gene77512.t1 | MTR_1g097935 | 90.551 | 381 | 36 | 0 | 3 | 383 | 8 | 388 | 0.0 | 732 |
| MS.gene77512.t1 | MTR_1g097910 | 90.289 | 381 | 37 | 0 | 3 | 383 | 8 | 388 | 0.0 | 732 |
| MS.gene77512.t1 | MTR_7g016700 | 90.026 | 381 | 38 | 0 | 3 | 383 | 8 | 388 | 0.0 | 731 |
| MS.gene77512.t1 | MTR_7g016780 | 90.289 | 381 | 37 | 0 | 3 | 383 | 8 | 388 | 0.0 | 730 |
| MS.gene77512.t1 | MTR_5g007760 | 90.289 | 381 | 37 | 0 | 3 | 383 | 8 | 388 | 0.0 | 730 |
| MS.gene77512.t1 | MTR_5g007730 | 90.026 | 381 | 38 | 0 | 3 | 383 | 8 | 388 | 0.0 | 730 |
| MS.gene77512.t1 | MTR_3g086260 | 86.911 | 382 | 50 | 0 | 3 | 384 | 8 | 389 | 0.0 | 697 |
| MS.gene77512.t1 | MTR_2g058470 | 84.514 | 381 | 59 | 0 | 3 | 383 | 8 | 388 | 0.0 | 685 |
| MS.gene77512.t1 | MTR_7g084300 | 82.105 | 380 | 68 | 0 | 3 | 382 | 8 | 387 | 0.0 | 671 |
| MS.gene77512.t1 | MTR_3g088675 | 69.816 | 381 | 115 | 0 | 3 | 383 | 8 | 388 | 0.0 | 585 |
| MS.gene77512.t1 | MTR_7g113405 | 89.735 | 302 | 31 | 0 | 82 | 383 | 1 | 302 | 0.0 | 565 |
| MS.gene77512.t1 | MTR_5g007740 | 79.012 | 324 | 68 | 0 | 59 | 382 | 1 | 324 | 0.0 | 534 |
| MS.gene77512.t1 | MTR_5g007723 | 65.228 | 394 | 90 | 5 | 7 | 382 | 32 | 396 | 0.0 | 510 |
| MS.gene77512.t1 | MTR_5g007770 | 73.667 | 300 | 46 | 2 | 65 | 364 | 1 | 267 | 7.95e-161 | 452 |
| MS.gene77512.t1 | MTR_3g088670 | 47.826 | 391 | 190 | 6 | 4 | 383 | 1 | 388 | 3.18e-129 | 377 |
| MS.gene77512.t1 | MTR_4g075560 | 43.158 | 380 | 209 | 4 | 6 | 382 | 13 | 388 | 1.29e-104 | 314 |
| MS.gene77512.t1 | MTR_4g078730 | 38.338 | 373 | 223 | 2 | 10 | 382 | 24 | 389 | 1.75e-95 | 290 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77512.t1 | AT5G13930 | 84.252 | 381 | 59 | 1 | 3 | 382 | 13 | 393 | 0.0 | 677 |
| MS.gene77512.t1 | AT4G34850 | 41.067 | 375 | 217 | 3 | 10 | 382 | 18 | 390 | 1.82e-98 | 298 |
| MS.gene77512.t1 | AT4G00040 | 41.114 | 377 | 212 | 5 | 9 | 382 | 16 | 385 | 1.92e-96 | 293 |
| MS.gene77512.t1 | AT1G02050 | 40.476 | 378 | 215 | 5 | 10 | 384 | 24 | 394 | 8.56e-90 | 276 |
| MS.gene77512.t1 | AT4G34850 | 41.509 | 318 | 183 | 2 | 67 | 382 | 1 | 317 | 4.65e-84 | 259 |
| MS.gene77512.t1 | AT3G52160 | 28.395 | 243 | 158 | 9 | 145 | 384 | 97 | 326 | 3.93e-13 | 70.1 |
| MS.gene77512.t1 | AT3G52160 | 28.631 | 241 | 156 | 9 | 145 | 382 | 210 | 437 | 8.29e-13 | 70.1 |
Find 96 sgRNAs with CRISPR-Local
Find 128 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGGATTACAATTCCATCTTT+TGG | 0.222422 | 3.2:-72419657 | MS.gene77512:CDS |
| GACCAAGTTGAACTCAAATT+AGG | 0.280063 | 3.2:-72419604 | MS.gene77512:CDS |
| AACAAAGGCTTCTCAACTTC+TGG | 0.283514 | 3.2:+72419847 | None:intergenic |
| CGACATGTACTTAGCGAATA+TGG | 0.292871 | 3.2:-72419553 | MS.gene77512:CDS |
| CTTGTGGGGCAGGCATTGTT+TGG | 0.310912 | 3.2:-72419910 | MS.gene77512:CDS |
| CAACAAAGGTGCTCGTGTTT+TGG | 0.312169 | 3.2:-72419995 | MS.gene77512:CDS |
| TCAATAGCCCCTTCACTATC+TGG | 0.313851 | 3.2:+72419793 | None:intergenic |
| GAAGACGGACTTGCCACAAC+TGG | 0.316140 | 3.2:-72419472 | MS.gene77512:CDS |
| TATCAGCTCACAAAGCTATT+AGG | 0.326867 | 3.2:-72420111 | MS.gene77512:CDS |
| AGCCTTTGTTTGAATTGGTT+TGG | 0.328022 | 3.2:-72419834 | MS.gene77512:CDS |
| AACTGGGGAGGGACTTGAAT+GGG | 0.331088 | 3.2:-72419455 | MS.gene77512:CDS |
| TGAGAAGCCTTTGTTTGAAT+TGG | 0.342314 | 3.2:-72419839 | MS.gene77512:CDS |
| GCTTCGTTTGGCTAAAGATT+TGG | 0.342769 | 3.2:-72420025 | MS.gene77512:CDS |
| CATCTCCTCAAGGATGTTCC+TGG | 0.370213 | 3.2:-72419739 | MS.gene77512:CDS |
| AACAGTCTCGATTGTGAGTC+CGG | 0.377576 | 3.2:+72419411 | None:intergenic |
| CCTGCCACTGTCTTTGCAAT+AGG | 0.391107 | 3.2:-72420586 | MS.gene77512:CDS |
| TCAACTTGGTCAAGAATTGC+TGG | 0.392629 | 3.2:+72419616 | None:intergenic |
| ATTGGATGCAAGACAGGATA+TGG | 0.394068 | 3.2:-72420265 | MS.gene77512:CDS |
| TCAAGAATTGCTGGTCCACC+TGG | 0.408988 | 3.2:+72419625 | None:intergenic |
| TGAGTACATGGCACCTTCAT+TGG | 0.415295 | 3.2:-72420283 | MS.gene77512:CDS |
| TCTTGATAGTCTTGTGGGGC+AGG | 0.418345 | 3.2:-72419920 | MS.gene77512:CDS |
| AACAAAGGCTATCAAGGAAT+GGG | 0.424210 | 3.2:-72420205 | MS.gene77512:CDS |
| TGGTGGCACGGTGCTTCGTT+TGG | 0.426992 | 3.2:-72420037 | MS.gene77512:CDS |
| AGATGAGTAATCTTTGACTT+CGG | 0.435403 | 3.2:+72420177 | None:intergenic |
| ACTCATCTTGATAGTCTTGT+GGG | 0.449676 | 3.2:-72419925 | MS.gene77512:CDS |
| ATGTTCTTTGAGACGAGGCC+AGG | 0.453712 | 3.2:+72419721 | None:intergenic |
| CCTATTGCAAAGACAGTGGC+AGG | 0.460571 | 3.2:+72420586 | None:intergenic |
| ACCTTCATTGGATGCAAGAC+AGG | 0.464180 | 3.2:-72420271 | MS.gene77512:CDS |
| GATAGTGAAGGGGCTATTGA+TGG | 0.464379 | 3.2:-72419790 | MS.gene77512:CDS |
| TGCGTGTGTGTTATTCATCT+TGG | 0.470585 | 3.2:-72419518 | MS.gene77512:CDS |
| ATTTCAGCCTTTGAATATCT+CGG | 0.471656 | 3.2:-72419677 | MS.gene77512:CDS |
| GGCTGCAACAAAGGCTATCA+AGG | 0.472973 | 3.2:-72420211 | MS.gene77512:CDS |
| GGGCAGGCATTGTTTGGAGA+TGG | 0.475842 | 3.2:-72419904 | MS.gene77512:CDS |
| ATCATATAACGCTTCACAGA+CGG | 0.478105 | 3.2:+72420081 | None:intergenic |
| TACTCATCTTGATAGTCTTG+TGG | 0.487158 | 3.2:-72419926 | MS.gene77512:CDS |
| ATCACTGCAGTTACTTTCCG+TGG | 0.495969 | 3.2:-72419958 | MS.gene77512:CDS |
| GGTGCAGCAGCTGTGATTGT+TGG | 0.502726 | 3.2:-72419883 | MS.gene77512:CDS |
| AGGAAAAGAGGCTGCAACAA+AGG | 0.503571 | 3.2:-72420220 | MS.gene77512:CDS |
| TCATATAACGCTTCACAGAC+GGG | 0.503757 | 3.2:+72420082 | None:intergenic |
| CAACAAAGGCTATCAAGGAA+TGG | 0.506508 | 3.2:-72420206 | MS.gene77512:CDS |
| TCCTGTCTTGCATCCAATGA+AGG | 0.510738 | 3.2:+72420270 | None:intergenic |
| GTGATACGGAAGTAAAAGTC+AGG | 0.511667 | 3.2:+72420523 | None:intergenic |
| CAGGAACATCCTTGAGGAGA+TGG | 0.526587 | 3.2:+72419740 | None:intergenic |
| GTGAGCTGATAGTCAGCGCC+AGG | 0.530050 | 3.2:+72420123 | None:intergenic |
| AGCCTAATTTGAGTTCAACT+TGG | 0.530563 | 3.2:+72419602 | None:intergenic |
| GATGGTCACCTTCGAGAAGC+AGG | 0.531933 | 3.2:-72419772 | MS.gene77512:CDS |
| TGTGTTCACTGTTTGTGATA+CGG | 0.533500 | 3.2:+72420509 | None:intergenic |
| TCCTAGTTTATGTGAGTACA+TGG | 0.536509 | 3.2:-72420295 | MS.gene77512:CDS |
| TGGGTGCGCGATCCAAAAGA+TGG | 0.539710 | 3.2:+72419645 | None:intergenic |
| GGCTTCTCAACTTCTGGCAA+CGG | 0.544110 | 3.2:+72419853 | None:intergenic |
| CGCCAGGCACAGAGAGCTGA+AGG | 0.545066 | 3.2:-72420610 | MS.gene77512:intron |
| TATATATCTTACACATGCGC+TGG | 0.547544 | 3.2:+72420464 | None:intergenic |
| AGTACCAAAGCTAGGAAAAG+AGG | 0.551914 | 3.2:-72420232 | MS.gene77512:CDS |
| TTCAAGTCCCTCCCCAGTTG+TGG | 0.554975 | 3.2:+72419459 | None:intergenic |
| CAACTGGGGAGGGACTTGAA+TGG | 0.559061 | 3.2:-72419456 | MS.gene77512:CDS |
| GGACTTGCCACAACTGGGGA+GGG | 0.560542 | 3.2:-72419466 | MS.gene77512:CDS |
| AAGACGGACTTGCCACAACT+GGG | 0.564383 | 3.2:-72419471 | MS.gene77512:CDS |
| CTATCAAGATGAGTATCACT+AGG | 0.565719 | 3.2:+72419934 | None:intergenic |
| CATTGAGAAGGCTCTTGTTG+AGG | 0.569802 | 3.2:-72419701 | MS.gene77512:CDS |
| CAATCGTTCCAGATAGTGAA+GGG | 0.573996 | 3.2:-72419801 | MS.gene77512:CDS |
| TTTGACTGAAGAGATTCTGA+AGG | 0.575431 | 3.2:-72420322 | MS.gene77512:CDS |
| AAGACAGGATATGGTGGTTG+TGG | 0.581715 | 3.2:-72420256 | MS.gene77512:CDS |
| GTAAAATGTGAGGATTTAGG+TGG | 0.583137 | 3.2:+72419372 | None:intergenic |
| ACAGTCTCGATTGTGAGTCC+GGG | 0.593437 | 3.2:+72419412 | None:intergenic |
| GTCCAAACCAATTCAAACAA+AGG | 0.596458 | 3.2:+72419832 | None:intergenic |
| AGGAGGAAATCAAAAGAAGA+CGG | 0.601763 | 3.2:-72419487 | MS.gene77512:CDS |
| AGGCATATCCACACCACTTG+TGG | 0.602144 | 3.2:+72420143 | None:intergenic |
| TTGTAATCCGAGATATTCAA+AGG | 0.602211 | 3.2:+72419670 | None:intergenic |
| CGGACTTGCCACAACTGGGG+AGG | 0.602805 | 3.2:-72419467 | MS.gene77512:CDS |
| TCTCAATGTTCTTTGAGACG+AGG | 0.602904 | 3.2:+72419716 | None:intergenic |
| ACAAGTGGTGTGGATATGCC+TGG | 0.605047 | 3.2:-72420141 | MS.gene77512:CDS |
| CGTCTCAAAGAACATTGAGA+AGG | 0.605370 | 3.2:-72419713 | MS.gene77512:CDS |
| CTACAGAGTCATGCGCAAGA+TGG | 0.610678 | 3.2:-72420998 | None:intergenic |
| ATGTCAGTCCTGCTTCTCGA+AGG | 0.612769 | 3.2:+72419764 | None:intergenic |
| ACTGACATTCCATCTCCTCA+AGG | 0.613763 | 3.2:-72419749 | MS.gene77512:CDS |
| GTTGTGGAAGTACCAAAGCT+AGG | 0.617435 | 3.2:-72420240 | MS.gene77512:CDS |
| ACAATCGTTCCAGATAGTGA+AGG | 0.620808 | 3.2:-72419802 | MS.gene77512:CDS |
| GCCATGTACTCACATAAACT+AGG | 0.622323 | 3.2:+72420294 | None:intergenic |
| TCATCTTGGATGAGATGAGG+AGG | 0.622546 | 3.2:-72419504 | MS.gene77512:CDS |
| TATTCATCTTGGATGAGATG+AGG | 0.624035 | 3.2:-72419507 | MS.gene77512:CDS |
| CAAGAATTGCTGGTCCACCT+GGG | 0.631788 | 3.2:+72419626 | None:intergenic |
| GATGAGTATCACTAGGTCCA+CGG | 0.642251 | 3.2:+72419941 | None:intergenic |
| ACTGGGGAGGGACTTGAATG+GGG | 0.644000 | 3.2:-72419454 | MS.gene77512:CDS |
| ATCGAGACTGTTGTGCTCCG+TGG | 0.647608 | 3.2:-72419400 | MS.gene77512:CDS |
| CGTTATATGATGTATCAACA+AGG | 0.650243 | 3.2:-72420069 | MS.gene77512:CDS |
| CTCATCTTGATAGTCTTGTG+GGG | 0.651714 | 3.2:-72419924 | MS.gene77512:CDS |
| TTCGCTAAGTACATGTCGAG+TGG | 0.653182 | 3.2:+72419558 | None:intergenic |
| ACAAAGGCTATCAAGGAATG+GGG | 0.667647 | 3.2:-72420204 | MS.gene77512:CDS |
| CGAGGCCAGGAACATCCTTG+AGG | 0.671207 | 3.2:+72419734 | None:intergenic |
| GATTTGGCTGAAAACAACAA+AGG | 0.694413 | 3.2:-72420009 | MS.gene77512:CDS |
| AGACGGACTTGCCACAACTG+GGG | 0.698387 | 3.2:-72419470 | MS.gene77512:CDS |
| AATCGTTCCAGATAGTGAAG+GGG | 0.700404 | 3.2:-72419800 | MS.gene77512:CDS |
| GGATTTAGGTGGACACACCA+CGG | 0.706874 | 3.2:+72419383 | None:intergenic |
| CTATTGCAAAGACAGTGGCA+GGG | 0.708075 | 3.2:+72420587 | None:intergenic |
| AGTGCCTATTGCAAAGACAG+TGG | 0.727850 | 3.2:+72420582 | None:intergenic |
| GGATGCAAGACAGGATATGG+TGG | 0.728808 | 3.2:-72420262 | MS.gene77512:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAATTAAAAAAATGAGTT+AGG | + | chr3.2:72419418-72419437 | None:intergenic | 10.0% |
| !! | ACATAAAAGATATATAATAT+AGG | + | chr3.2:72419943-72419962 | None:intergenic | 10.0% |
| !! | AAATGAACTTAAGAAGAATT+TGG | + | chr3.2:72419693-72419712 | None:intergenic | 20.0% |
| !! | AATAATTAGTACTAATTAGC+CGG | - | chr3.2:72419537-72419556 | MS.gene77512:CDS | 20.0% |
| ! | TAAAAAAATGAGTTAGGTGA+GGG | + | chr3.2:72419412-72419431 | None:intergenic | 25.0% |
| ! | TATAGTGTTACATTACAACA+TGG | + | chr3.2:72419591-72419610 | None:intergenic | 25.0% |
| ! | TTAAAAAAATGAGTTAGGTG+AGG | + | chr3.2:72419413-72419432 | None:intergenic | 25.0% |
| ATTTCAGCCTTTGAATATCT+CGG | - | chr3.2:72420698-72420717 | MS.gene77512:intron | 30.0% | |
| CGTTATATGATGTATCAACA+AGG | - | chr3.2:72420306-72420325 | MS.gene77512:CDS | 30.0% | |
| GAACTTAAGAAGAATTTGGT+TGG | + | chr3.2:72419689-72419708 | None:intergenic | 30.0% | |
| GGATCAAATAAGCATCATTA+TGG | + | chr3.2:72419563-72419582 | None:intergenic | 30.0% | |
| TTACATTACAACATGGATGA+TGG | + | chr3.2:72419584-72419603 | None:intergenic | 30.0% | |
| TTCTTCATTGTGAATTGTGA+TGG | - | chr3.2:72419725-72419744 | MS.gene77512:CDS | 30.0% | |
| TTGTAATCCGAGATATTCAA+AGG | + | chr3.2:72420708-72420727 | None:intergenic | 30.0% | |
| ! | AGATGAGTAATCTTTGACTT+CGG | + | chr3.2:72420201-72420220 | None:intergenic | 30.0% |
| ! | TATGCTGTGTATGATTTTTC+AGG | - | chr3.2:72419997-72420016 | MS.gene77512:CDS | 30.0% |
| AACAAAGGCTATCAAGGAAT+GGG | - | chr3.2:72420170-72420189 | MS.gene77512:CDS | 35.0% | |
| AGGAGGAAATCAAAAGAAGA+CGG | - | chr3.2:72420888-72420907 | MS.gene77512:intron | 35.0% | |
| ATCATATAACGCTTCACAGA+CGG | + | chr3.2:72420297-72420316 | None:intergenic | 35.0% | |
| CAAATAAGCATCATTATGGC+CGG | + | chr3.2:72419559-72419578 | None:intergenic | 35.0% | |
| CTATCAAGATGAGTATCACT+AGG | + | chr3.2:72420444-72420463 | None:intergenic | 35.0% | |
| GATTTGGCTGAAAACAACAA+AGG | - | chr3.2:72420366-72420385 | MS.gene77512:intron | 35.0% | |
| GTCCAAACCAATTCAAACAA+AGG | + | chr3.2:72420546-72420565 | None:intergenic | 35.0% | |
| TATATATCTTACACATGCGC+TGG | + | chr3.2:72419914-72419933 | None:intergenic | 35.0% | |
| TATCAGCTCACAAAGCTATT+AGG | - | chr3.2:72420264-72420283 | MS.gene77512:CDS | 35.0% | |
| TATTCATCTTGGATGAGATG+AGG | - | chr3.2:72420868-72420887 | MS.gene77512:intron | 35.0% | |
| TCCTAGTTTATGTGAGTACA+TGG | - | chr3.2:72420080-72420099 | MS.gene77512:CDS | 35.0% | |
| TGTGTTCACTGTTTGTGATA+CGG | + | chr3.2:72419869-72419888 | None:intergenic | 35.0% | |
| TTCTGTGTGAGAAATGAGAA+TGG | + | chr3.2:72419459-72419478 | None:intergenic | 35.0% | |
| TTGTGTGAGAAAAAGTTGTG+TGG | + | chr3.2:72419627-72419646 | None:intergenic | 35.0% | |
| TTTGACTGAAGAGATTCTGA+AGG | - | chr3.2:72420053-72420072 | MS.gene77512:CDS | 35.0% | |
| ! | AGCCTAATTTGAGTTCAACT+TGG | + | chr3.2:72420776-72420795 | None:intergenic | 35.0% |
| ! | AGCCTTTGTTTGAATTGGTT+TGG | - | chr3.2:72420541-72420560 | MS.gene77512:CDS | 35.0% |
| ! | CGGATTACAATTCCATCTTT+TGG | - | chr3.2:72420718-72420737 | MS.gene77512:intron | 35.0% |
| ! | GACCAAGTTGAACTCAAATT+AGG | - | chr3.2:72420771-72420790 | MS.gene77512:intron | 35.0% |
| ! | TACTCATCTTGATAGTCTTG+TGG | - | chr3.2:72420449-72420468 | MS.gene77512:intron | 35.0% |
| ! | TGAGAAGCCTTTGTTTGAAT+TGG | - | chr3.2:72420536-72420555 | MS.gene77512:CDS | 35.0% |
| !! | ACTCATCTTGATAGTCTTGT+GGG | - | chr3.2:72420450-72420469 | MS.gene77512:intron | 35.0% |
| !! | ATTTGGTTGGTAAGAGAAGA+AGG | + | chr3.2:72419676-72419695 | None:intergenic | 35.0% |
| !! | TATCAACAAGGTTGTTTTGC+TGG | - | chr3.2:72420318-72420337 | MS.gene77512:CDS | 35.0% |
| !!! | CTAATTTTTTGCACCACAAG+TGG | - | chr3.2:72420219-72420238 | MS.gene77512:CDS | 35.0% |
| AAAAATGAGTTAGGTGAGGG+AGG | + | chr3.2:72419409-72419428 | None:intergenic | 40.0% | |
| AACAAAGGCTTCTCAACTTC+TGG | + | chr3.2:72420531-72420550 | None:intergenic | 40.0% | |
| AATCGTTCCAGATAGTGAAG+GGG | - | chr3.2:72420575-72420594 | MS.gene77512:CDS | 40.0% | |
| ACAAAGGCTATCAAGGAATG+GGG | - | chr3.2:72420171-72420190 | MS.gene77512:CDS | 40.0% | |
| ACAATCGTTCCAGATAGTGA+AGG | - | chr3.2:72420573-72420592 | MS.gene77512:CDS | 40.0% | |
| AGTACCAAAGCTAGGAAAAG+AGG | - | chr3.2:72420143-72420162 | MS.gene77512:CDS | 40.0% | |
| ATTGGATGCAAGACAGGATA+TGG | - | chr3.2:72420110-72420129 | MS.gene77512:CDS | 40.0% | |
| CAACAAAGGCTATCAAGGAA+TGG | - | chr3.2:72420169-72420188 | MS.gene77512:CDS | 40.0% | |
| CAATCGTTCCAGATAGTGAA+GGG | - | chr3.2:72420574-72420593 | MS.gene77512:CDS | 40.0% | |
| CATTTCTCACACAGAACACT+AGG | - | chr3.2:72419463-72419482 | MS.gene77512:CDS | 40.0% | |
| CGACATGTACTTAGCGAATA+TGG | - | chr3.2:72420822-72420841 | MS.gene77512:intron | 40.0% | |
| CGTCTCAAAGAACATTGAGA+AGG | - | chr3.2:72420662-72420681 | MS.gene77512:intron | 40.0% | |
| GCCATGTACTCACATAAACT+AGG | + | chr3.2:72420084-72420103 | None:intergenic | 40.0% | |
| GCTTCGTTTGGCTAAAGATT+TGG | - | chr3.2:72420350-72420369 | MS.gene77512:CDS | 40.0% | |
| GTGATACGGAAGTAAAAGTC+AGG | + | chr3.2:72419855-72419874 | None:intergenic | 40.0% | |
| TCAACTTGGTCAAGAATTGC+TGG | + | chr3.2:72420762-72420781 | None:intergenic | 40.0% | |
| TCATATAACGCTTCACAGAC+GGG | + | chr3.2:72420296-72420315 | None:intergenic | 40.0% | |
| ! | CTCTGATCAACACAGTTTTG+AGG | + | chr3.2:72419825-72419844 | None:intergenic | 40.0% |
| ! | TGCGTGTGTGTTATTCATCT+TGG | - | chr3.2:72420857-72420876 | MS.gene77512:intron | 40.0% |
| !! | CTCATCTTGATAGTCTTGTG+GGG | - | chr3.2:72420451-72420470 | MS.gene77512:intron | 40.0% |
| !! | TCTCAATGTTCTTTGAGACG+AGG | + | chr3.2:72420662-72420681 | None:intergenic | 40.0% |
| !!! | TCGTGTTTTGGTGGTTTGTT+CGG | - | chr3.2:72420392-72420411 | MS.gene77512:intron | 40.0% |
| AACAGTCTCGATTGTGAGTC+CGG | + | chr3.2:72420967-72420986 | None:intergenic | 45.0% | |
| AAGACAGGATATGGTGGTTG+TGG | - | chr3.2:72420119-72420138 | MS.gene77512:CDS | 45.0% | |
| ACCTTCATTGGATGCAAGAC+AGG | - | chr3.2:72420104-72420123 | MS.gene77512:CDS | 45.0% | |
| ACTGACATTCCATCTCCTCA+AGG | - | chr3.2:72420626-72420645 | MS.gene77512:intron | 45.0% | |
| AGGAAAAGAGGCTGCAACAA+AGG | - | chr3.2:72420155-72420174 | MS.gene77512:CDS | 45.0% | |
| AGTGCCTATTGCAAAGACAG+TGG | + | chr3.2:72419796-72419815 | None:intergenic | 45.0% | |
| CATTGAGAAGGCTCTTGTTG+AGG | - | chr3.2:72420674-72420693 | MS.gene77512:intron | 45.0% | |
| CTATTGCAAAGACAGTGGCA+GGG | + | chr3.2:72419791-72419810 | None:intergenic | 45.0% | |
| GATAGTGAAGGGGCTATTGA+TGG | - | chr3.2:72420585-72420604 | MS.gene77512:CDS | 45.0% | |
| GATGAGTATCACTAGGTCCA+CGG | + | chr3.2:72420437-72420456 | None:intergenic | 45.0% | |
| TCAATAGCCCCTTCACTATC+TGG | + | chr3.2:72420585-72420604 | None:intergenic | 45.0% | |
| TCATCTTGGATGAGATGAGG+AGG | - | chr3.2:72420871-72420890 | MS.gene77512:intron | 45.0% | |
| TCCTGTCTTGCATCCAATGA+AGG | + | chr3.2:72420108-72420127 | None:intergenic | 45.0% | |
| TGAGTACATGGCACCTTCAT+TGG | - | chr3.2:72420092-72420111 | MS.gene77512:CDS | 45.0% | |
| TTCGCTAAGTACATGTCGAG+TGG | + | chr3.2:72420820-72420839 | None:intergenic | 45.0% | |
| ! | ATCACTGCAGTTACTTTCCG+TGG | - | chr3.2:72420417-72420436 | MS.gene77512:intron | 45.0% |
| ! | CTTGAATGGGGTGTGCTTTT+CGG | - | chr3.2:72420933-72420952 | MS.gene77512:intron | 45.0% |
| ! | TTTTTGCACCACAAGTGGTG+TGG | - | chr3.2:72420224-72420243 | MS.gene77512:CDS | 45.0% |
| !! | CAACAAGGTTGTTTTGCTGG+TGG | - | chr3.2:72420321-72420340 | MS.gene77512:CDS | 45.0% |
| !! | GTTGTGGAAGTACCAAAGCT+AGG | - | chr3.2:72420135-72420154 | MS.gene77512:CDS | 45.0% |
| !!! | CAACAAAGGTGCTCGTGTTT+TGG | - | chr3.2:72420380-72420399 | MS.gene77512:intron | 45.0% |
| AACTGGGGAGGGACTTGAAT+GGG | - | chr3.2:72420920-72420939 | MS.gene77512:intron | 50.0% | |
| ACAAGTGGTGTGGATATGCC+TGG | - | chr3.2:72420234-72420253 | MS.gene77512:CDS | 50.0% | |
| ACAGTCTCGATTGTGAGTCC+GGG | + | chr3.2:72420966-72420985 | None:intergenic | 50.0% | |
| AGGCATATCCACACCACTTG+TGG | + | chr3.2:72420235-72420254 | None:intergenic | 50.0% | |
| ATGTCAGTCCTGCTTCTCGA+AGG | + | chr3.2:72420614-72420633 | None:intergenic | 50.0% | |
| CAAGAATTGCTGGTCCACCT+GGG | + | chr3.2:72420752-72420771 | None:intergenic | 50.0% | |
| CAGGAACATCCTTGAGGAGA+TGG | + | chr3.2:72420638-72420657 | None:intergenic | 50.0% | |
| CATCTCCTCAAGGATGTTCC+TGG | - | chr3.2:72420636-72420655 | MS.gene77512:intron | 50.0% | |
| CCTATTGCAAAGACAGTGGC+AGG | + | chr3.2:72419792-72419811 | None:intergenic | 50.0% | |
| CCTGCCACTGTCTTTGCAAT+AGG | - | chr3.2:72419789-72419808 | MS.gene77512:CDS | 50.0% | |
| GACAGTGAATGAGATACGCC+AGG | - | chr3.2:72419749-72419768 | MS.gene77512:CDS | 50.0% | |
| GGATGCAAGACAGGATATGG+TGG | - | chr3.2:72420113-72420132 | MS.gene77512:CDS | 50.0% | |
| GGCTGCAACAAAGGCTATCA+AGG | - | chr3.2:72420164-72420183 | MS.gene77512:CDS | 50.0% | |
| GGCTTCTCAACTTCTGGCAA+CGG | + | chr3.2:72420525-72420544 | None:intergenic | 50.0% | |
| TCAAGAATTGCTGGTCCACC+TGG | + | chr3.2:72420753-72420772 | None:intergenic | 50.0% | |
| ! | AAGACGGACTTGCCACAACT+GGG | - | chr3.2:72420904-72420923 | MS.gene77512:intron | 50.0% |
| ! | GCAGCCTCTTTTCCTAGCTT+TGG | + | chr3.2:72420150-72420169 | None:intergenic | 50.0% |
| ! | TGGGGTGTGCTTTTCGGTTT+TGG | - | chr3.2:72420939-72420958 | MS.gene77512:intron | 50.0% |
| !! | AGGTTGTTTTGCTGGTGGCA+CGG | - | chr3.2:72420326-72420345 | MS.gene77512:CDS | 50.0% |
| !! | ATGTTCTTTGAGACGAGGCC+AGG | + | chr3.2:72420657-72420676 | None:intergenic | 50.0% |
| !! | CGAGTGGCTTGCATTTTCTC+TGG | + | chr3.2:72420804-72420823 | None:intergenic | 50.0% |
| !! | GTGCTTTTCGGTTTTGGTCC+CGG | - | chr3.2:72420945-72420964 | MS.gene77512:intron | 50.0% |
| !! | TCTTGATAGTCTTGTGGGGC+AGG | - | chr3.2:72420455-72420474 | MS.gene77512:intron | 50.0% |
| !!! | CAAAGGTGCTCGTGTTTTGG+TGG | - | chr3.2:72420383-72420402 | MS.gene77512:intron | 50.0% |
| ACTGGGGAGGGACTTGAATG+GGG | - | chr3.2:72420921-72420940 | MS.gene77512:intron | 55.0% | |
| ATCGAGACTGTTGTGCTCCG+TGG | - | chr3.2:72420975-72420994 | MS.gene77512:intron | 55.0% | |
| CAACTGGGGAGGGACTTGAA+TGG | - | chr3.2:72420919-72420938 | MS.gene77512:intron | 55.0% | |
| GATGGTCACCTTCGAGAAGC+AGG | - | chr3.2:72420603-72420622 | MS.gene77512:CDS | 55.0% | |
| GGTGCAGCAGCTGTGATTGT+TGG | - | chr3.2:72420492-72420511 | MS.gene77512:CDS | 55.0% | |
| TGGGTGCGCGATCCAAAAGA+TGG | + | chr3.2:72420733-72420752 | None:intergenic | 55.0% | |
| TTCAAGTCCCTCCCCAGTTG+TGG | + | chr3.2:72420919-72420938 | None:intergenic | 55.0% | |
| ! | AGACGGACTTGCCACAACTG+GGG | - | chr3.2:72420905-72420924 | MS.gene77512:intron | 55.0% |
| ! | ATCTTTTGGATCGCGCACCC+AGG | - | chr3.2:72420732-72420751 | MS.gene77512:intron | 55.0% |
| ! | CTTGTGGGGCAGGCATTGTT+TGG | - | chr3.2:72420465-72420484 | MS.gene77512:intron | 55.0% |
| ! | GAAGACGGACTTGCCACAAC+TGG | - | chr3.2:72420903-72420922 | MS.gene77512:intron | 55.0% |
| ! | GGGCAGGCATTGTTTGGAGA+TGG | - | chr3.2:72420471-72420490 | MS.gene77512:intron | 55.0% |
| CGAGGCCAGGAACATCCTTG+AGG | + | chr3.2:72420644-72420663 | None:intergenic | 60.0% | |
| GGACTTGCCACAACTGGGGA+GGG | - | chr3.2:72420909-72420928 | MS.gene77512:intron | 60.0% | |
| GTGAGCTGATAGTCAGCGCC+AGG | + | chr3.2:72420255-72420274 | None:intergenic | 60.0% | |
| TGGTGGCACGGTGCTTCGTT+TGG | - | chr3.2:72420338-72420357 | MS.gene77512:CDS | 60.0% | |
| ! | TTTTGGATCGCGCACCCAGG+TGG | - | chr3.2:72420735-72420754 | MS.gene77512:intron | 60.0% |
| CGCCAGGCACAGAGAGCTGA+AGG | - | chr3.2:72419765-72419784 | MS.gene77512:CDS | 65.0% | |
| CGGACTTGCCACAACTGGGG+AGG | - | chr3.2:72420908-72420927 | MS.gene77512:intron | 65.0% | |
| GGCCTTCAGCTCTCTGTGCC+TGG | + | chr3.2:72419770-72419789 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 72419387 | 72421010 | 72419387 | ID=MS.gene77512 |
| chr3.2 | mRNA | 72419387 | 72421010 | 72419387 | ID=MS.gene77512.t1;Parent=MS.gene77512 |
| chr3.2 | exon | 72420999 | 72421010 | 72420999 | ID=MS.gene77512.t1.exon1;Parent=MS.gene77512.t1 |
| chr3.2 | CDS | 72420999 | 72421010 | 72420999 | ID=cds.MS.gene77512.t1;Parent=MS.gene77512.t1 |
| chr3.2 | exon | 72420476 | 72420626 | 72420476 | ID=MS.gene77512.t1.exon2;Parent=MS.gene77512.t1 |
| chr3.2 | CDS | 72420476 | 72420626 | 72420476 | ID=cds.MS.gene77512.t1;Parent=MS.gene77512.t1 |
| chr3.2 | exon | 72419387 | 72420378 | 72419387 | ID=MS.gene77512.t1.exon3;Parent=MS.gene77512.t1 |
| chr3.2 | CDS | 72419387 | 72420378 | 72419387 | ID=cds.MS.gene77512.t1;Parent=MS.gene77512.t1 |
| Gene Sequence |
| Protein sequence |
