AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene77555

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene77555.t1 MTR_3g084630 98.227 282 5 0 1 282 1 282 0.0 581
MS.gene77555.t1 MTR_3g084620 97.872 282 6 0 1 282 1 282 0.0 578
MS.gene77555.t1 MTR_8g102220 86.170 282 26 3 1 281 1 270 4.10e-179 494
MS.gene77555.t1 MTR_8g081040 85.874 269 36 2 10 277 14 281 7.40e-177 489
MS.gene77555.t1 MTR_4g128410 72.059 272 68 2 14 278 11 281 7.24e-143 403
MS.gene77555.t1 MTR_7g093530 72.222 270 69 1 14 277 10 279 6.79e-141 398
MS.gene77555.t1 MTR_4g128580 71.910 267 65 1 21 277 19 285 1.13e-138 392
MS.gene77555.t1 MTR_4g128570 68.015 272 78 2 7 277 9 272 2.32e-136 386
MS.gene77555.t1 MTR_4g128400 63.604 283 97 1 1 277 1 283 4.30e-132 376
MS.gene77555.t1 MTR_2g038860 65.108 278 86 1 11 277 9 286 1.31e-131 375
MS.gene77555.t1 MTR_2g038705 65.108 278 86 1 11 277 9 286 1.31e-131 375
MS.gene77555.t1 MTR_4g126920 67.681 263 78 1 22 277 19 281 6.07e-131 373
MS.gene77555.t1 MTR_4g128590 64.605 291 73 4 1 277 1 275 2.12e-129 369
MS.gene77555.t1 MTR_5g091730 52.465 284 132 2 1 281 1 284 2.12e-106 311
MS.gene77555.t1 MTR_7g084770 52.740 292 126 3 1 281 1 291 5.93e-106 310
MS.gene77555.t1 MTR_7g084760 52.069 290 127 3 1 279 1 289 3.02e-104 305
MS.gene77555.t1 MTR_6g033055 51.712 292 123 4 7 281 1 291 1.97e-103 303
MS.gene77555.t1 MTR_8g102910 52.098 286 122 5 10 282 1 284 2.14e-102 300
MS.gene77555.t1 MTR_7g084750 50.342 292 133 3 1 281 1 291 2.59e-102 300
MS.gene77555.t1 MTR_6g033085 51.027 292 131 3 1 281 1 291 3.52e-102 300
MS.gene77555.t1 MTR_6g088320 49.291 282 128 3 14 282 9 288 2.49e-97 288
MS.gene77555.t1 MTR_3g089540 51.351 259 119 2 26 279 28 284 6.22e-96 284
MS.gene77555.t1 MTR_4g045853 49.286 280 122 5 14 277 13 288 3.75e-94 280
MS.gene77555.t1 MTR_2g089140 47.797 295 128 7 1 279 4 288 2.08e-93 278
MS.gene77555.t1 MTR_4g097640 48.387 279 135 4 6 277 11 287 5.48e-93 276
MS.gene77555.t1 MTR_4g097670 48.387 279 135 4 6 277 11 287 5.48e-93 276
MS.gene77555.t1 MTR_1g105900 47.445 274 134 2 17 282 25 296 6.96e-93 276
MS.gene77555.t1 MTR_4g097700 50.193 259 121 3 26 277 67 324 8.64e-92 275
MS.gene77555.t1 MTR_1g105495 44.604 278 142 3 11 277 18 294 2.46e-83 252
MS.gene77555.t1 MTR_2g089140 52.212 226 92 4 69 279 1 225 1.61e-82 248
MS.gene77555.t1 MTR_8g013055 45.000 260 128 4 28 277 31 285 2.08e-78 239
MS.gene77555.t1 MTR_7g102260 41.569 255 133 5 25 268 34 283 1.04e-62 199
MS.gene77555.t1 MTR_7g056090 39.850 266 145 6 11 265 12 273 6.23e-62 197
MS.gene77555.t1 MTR_2g095800 40.684 263 137 6 18 268 46 301 8.90e-60 192
MS.gene77555.t1 MTR_4g057450 41.603 262 136 6 27 277 49 304 9.08e-60 192
MS.gene77555.t1 MTR_1g063020 39.773 264 142 6 25 277 37 294 1.12e-58 189
MS.gene77555.t1 MTR_2g049130 38.224 259 143 7 28 278 29 278 6.92e-55 179
MS.gene77555.t1 MTR_1g033420 37.931 261 149 6 28 277 33 291 3.37e-52 173
MS.gene77555.t1 MTR_2g049030 35.317 252 149 6 28 271 30 275 2.77e-50 167
MS.gene77555.t1 MTR_5g029100 36.090 266 152 7 28 277 42 305 4.20e-50 169
MS.gene77555.t1 MTR_8g064180 35.338 266 149 8 32 278 50 311 5.88e-50 167
MS.gene77555.t1 MTR_5g029100 34.749 259 145 8 41 277 18 274 1.58e-45 156
MS.gene77555.t1 MTR_8g090100 34.601 263 157 5 28 277 21 281 7.44e-44 152
MS.gene77555.t1 MTR_8g479340 30.256 195 55 8 97 277 8 135 4.73e-16 73.6
MS.gene77555.t1 MTR_8g032640 32.558 172 108 5 50 219 33 198 2.98e-13 67.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene77555.t1 AT3G23730 71.678 286 70 2 7 281 5 290 1.38e-163 456
MS.gene77555.t1 AT4G14130 72.917 288 71 2 1 281 1 288 2.03e-162 452
MS.gene77555.t1 AT4G25810 65.091 275 88 1 11 277 9 283 7.35e-133 378
MS.gene77555.t1 AT4G30270 64.504 262 85 1 16 277 12 265 2.67e-128 365
MS.gene77555.t1 AT5G57560 62.094 277 92 2 10 277 9 281 3.18e-128 366
MS.gene77555.t1 AT5G57550 64.981 257 87 1 25 278 27 283 4.27e-128 365
MS.gene77555.t1 AT5G57530 62.879 264 82 2 25 277 24 282 4.54e-123 353
MS.gene77555.t1 AT5G57540 62.500 264 83 3 25 277 23 281 7.45e-122 350
MS.gene77555.t1 AT2G18800 57.857 280 99 2 17 277 17 296 7.24e-121 348
MS.gene77555.t1 AT4G25820 62.406 266 92 2 20 278 22 286 5.06e-119 343
MS.gene77555.t1 AT5G48070 57.565 271 112 2 10 277 11 281 7.35e-117 337
MS.gene77555.t1 AT4G30290 57.934 271 111 2 10 277 6 276 1.34e-108 316
MS.gene77555.t1 AT4G30280 57.407 270 112 2 11 277 12 281 2.40e-108 315
MS.gene77555.t1 AT1G65310 59.615 260 102 2 21 277 22 281 2.48e-107 313
MS.gene77555.t1 AT1G65310 59.615 260 102 2 21 277 44 303 3.25e-107 313
MS.gene77555.t1 AT5G13870 54.023 261 112 2 28 281 32 291 7.82e-101 296
MS.gene77555.t1 AT5G13870 54.023 261 112 2 28 281 32 291 7.82e-101 296
MS.gene77555.t1 AT5G13870 54.023 261 112 2 28 281 32 291 7.82e-101 296
MS.gene77555.t1 AT2G06850 52.281 285 122 3 10 281 11 294 2.00e-100 296
MS.gene77555.t1 AT4G03210 48.936 282 130 5 10 281 11 288 8.56e-96 284
MS.gene77555.t1 AT2G14620 46.181 288 140 2 10 282 12 299 1.02e-93 279
MS.gene77555.t1 AT2G06850 57.143 231 91 2 58 281 5 234 2.34e-92 273
MS.gene77555.t1 AT4G28850 47.552 286 134 5 10 282 10 292 7.59e-92 274
MS.gene77555.t1 AT5G65730 48.561 278 127 6 11 278 20 291 3.38e-91 272
MS.gene77555.t1 AT4G37800 48.120 266 126 4 21 277 27 289 1.68e-88 265
MS.gene77555.t1 AT4G03210 52.381 231 100 3 60 281 31 260 4.98e-86 258
MS.gene77555.t1 AT1G11545 45.357 280 139 4 11 277 21 299 6.00e-86 259
MS.gene77555.t1 AT2G14620 48.707 232 111 1 59 282 18 249 2.07e-82 248
MS.gene77555.t1 AT2G14620 49.327 223 105 1 68 282 16 238 2.53e-80 243
MS.gene77555.t1 AT4G13090 40.893 291 151 4 7 278 1 289 4.72e-75 231
MS.gene77555.t1 AT3G25050 40.927 259 140 3 28 277 35 289 2.99e-73 226
MS.gene77555.t1 AT4G13080 45.420 262 124 7 28 278 39 292 2.62e-72 224
MS.gene77555.t1 AT2G36870 42.857 266 135 6 25 279 40 299 3.87e-63 201
MS.gene77555.t1 AT3G44990 40.590 271 142 8 18 277 31 293 1.55e-57 186
MS.gene77555.t1 AT1G14720 34.783 299 170 7 7 281 4 301 2.52e-53 176
MS.gene77555.t1 AT1G10550 36.029 272 139 8 32 277 47 309 5.58e-53 175
MS.gene77555.t1 AT1G32170 34.471 293 163 8 8 277 7 293 1.32e-52 175
MS.gene77555.t1 AT2G01850 31.773 299 179 6 7 281 4 301 2.69e-50 169
MS.gene77555.t1 AT4G18990 34.601 263 140 7 50 282 62 322 3.79e-44 153
MS.gene77555.t1 AT3G48580 34.008 247 145 7 35 277 41 273 3.18e-43 149
MS.gene77555.t1 AT4G18990 33.755 237 121 8 77 282 17 248 9.78e-37 132
MS.gene77555.t1 AT3G48580 32.143 224 135 6 58 277 4 214 1.69e-36 130
MS.gene77555.t1 AT2G36870 43.262 141 70 3 25 157 40 178 2.28e-30 112
MS.gene77555.t1 AT3G48580 30.952 252 126 10 35 277 41 253 7.90e-28 108

Find 69 sgRNAs with CRISPR-Local

Find 94 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTCTCATTGGTTGGTTCTT+TGG 0.220550 3.2:-72846994 None:intergenic
TTCTCATTGGTTGGTTCTTT+GGG 0.221209 3.2:-72846993 None:intergenic
TCGAAGAAAGAGTATTTATT+TGG 0.223648 3.2:+72846017 MS.gene77555:CDS
GCATTCTTGAAGATCCTTAT+AGG 0.241455 3.2:-72846949 None:intergenic
ATTAATATGGCTTCTTCTAT+TGG 0.241934 3.2:+72845822 None:intergenic
CACTCTGCAGGAATACCTTC+TGG 0.325804 3.2:-72847267 None:intergenic
CATTCTTGAAGATCCTTATA+GGG 0.350905 3.2:-72846948 None:intergenic
TAGTTGATAACATCCCTATA+AGG 0.361735 3.2:+72846935 MS.gene77555:CDS
GTCTCTGGAACGCTGATGAT+TGG 0.365899 3.2:+72847025 MS.gene77555:CDS
TATTACTTACATAATGTGTT+GGG 0.366572 3.2:-72846830 None:intergenic
ATGCAACTCAAACTCGTTGC+TGG 0.383246 3.2:+72846050 MS.gene77555:CDS
GAGAACAACAATTCTACCTT+TGG 0.383624 3.2:+72846761 MS.gene77555:CDS
ACCAAGACTTTGATCTAACT+TGG 0.385781 3.2:+72845913 MS.gene77555:CDS
TTGTGGTAGTAAGCTGTAAA+TGG 0.389344 3.2:-72847090 None:intergenic
ATTGGTTGGTTCTTTGGGAA+TGG 0.395735 3.2:-72846988 None:intergenic
AGACTTGAATAGATTCTCAT+TGG 0.409589 3.2:-72847006 None:intergenic
ATAAATACTCTTTCTTCGAT+TGG 0.413180 3.2:-72846013 None:intergenic
TTCAAGAATGCTGAATCAAT+TGG 0.430099 3.2:+72846961 MS.gene77555:CDS
TGAGAATCTATTCAAGTCTC+TGG 0.437244 3.2:+72847010 MS.gene77555:CDS
AGAGTAAGTGTGGAAGTTCT+TGG 0.438651 3.2:-72846794 None:intergenic
CTAGACAAAACCTCGGGCTC+TGG 0.447506 3.2:+72845987 MS.gene77555:CDS
TCCACACTTACTCTATCATC+TGG 0.453939 3.2:+72846803 MS.gene77555:CDS
GTAAGCTGTAAATGGTGCTT+TGG 0.464723 3.2:-72847082 None:intergenic
TTGAATAGATTCTCATTGGT+TGG 0.466553 3.2:-72847002 None:intergenic
ATATTACTTACATAATGTGT+TGG 0.469145 3.2:-72846831 None:intergenic
TCTCTGGAACGCTGATGATT+GGG 0.473167 3.2:+72847026 MS.gene77555:CDS
AGCAATGAGCTTGATGCATA+TGG 0.481427 3.2:+72847174 MS.gene77555:CDS
AGTCATGATAATTAGCTCCT+TGG 0.482305 3.2:+72845866 MS.gene77555:CDS
CTCGTTGCTGGAAACTCCGC+TGG 0.483628 3.2:+72846062 MS.gene77555:CDS
TCATTGATCTCTCAGAACCT+TGG 0.486786 3.2:-72847297 None:intergenic
CTTGGACGCTTGCACTCTGC+AGG 0.489897 3.2:-72847279 None:intergenic
AAGTGTGGAAGTTCTTGGTT+GGG 0.498153 3.2:-72846789 None:intergenic
ACTCGGTAGCTTTGAAATTG+TGG 0.503664 3.2:-72847107 None:intergenic
CTGCAGAGTGCAAGCGTCCA+AGG 0.505272 3.2:+72847280 MS.gene77555:CDS
ACTCTGCAGGAATACCTTCT+GGG 0.505825 3.2:-72847266 None:intergenic
TTGGGCTACAAGAGGTGGTT+TGG 0.508778 3.2:+72847044 MS.gene77555:CDS
CCAAGACTTTGATCTAACTT+GGG 0.509119 3.2:+72845914 MS.gene77555:CDS
ACGTTTGTATGAAGAATGTA+AGG 0.516073 3.2:-72846715 None:intergenic
CACCGTGCTAAGATATTCAA+TGG 0.519496 3.2:+72845942 MS.gene77555:CDS
CCCAAGTTAGATCAAAGTCT+TGG 0.522663 3.2:-72845914 None:intergenic
GGCATGAACAATATGCTGAT+TGG 0.535335 3.2:+72845843 MS.gene77555:CDS
GAGTTCTTGGGAAATGTTAG+CGG 0.540045 3.2:+72846688 MS.gene77555:CDS
TAAGTGTGGAAGTTCTTGGT+TGG 0.544799 3.2:-72846790 None:intergenic
GTGGTTTGGTGAAAACTGAT+TGG 0.548484 3.2:+72847058 MS.gene77555:CDS
AAATCTATTTCATCGTGTGT+TGG 0.556214 3.2:-72846664 None:intergenic
ATTACTTACATAATGTGTTG+GGG 0.569004 3.2:-72846829 None:intergenic
TGCAGAATCAGAGAAGGAAG+TGG 0.572405 3.2:-72847145 None:intergenic
CGATTGGAAGCCAGAGCCCG+AGG 0.573236 3.2:-72845997 None:intergenic
GATGATTGGGCTACAAGAGG+TGG 0.583367 3.2:+72847039 MS.gene77555:CDS
TCCAGATGATAGAGTAAGTG+TGG 0.584360 3.2:-72846804 None:intergenic
ATGGTAGAAGAAGATTGAGG+TGG 0.584786 3.2:+72847193 MS.gene77555:CDS
AGCAGAACATGTAGCTACCA+AGG 0.586171 3.2:-72845883 None:intergenic
TCTTGGTTGGGTCAAACCAA+AGG 0.586504 3.2:-72846777 None:intergenic
CTTTCTCTAGACAAAACCTC+GGG 0.590397 3.2:+72845981 MS.gene77555:CDS
TCTTTCTCTAGACAAAACCT+CGG 0.610000 3.2:+72845980 MS.gene77555:CDS
CATATGGTAGAAGAAGATTG+AGG 0.622675 3.2:+72847190 MS.gene77555:CDS
CAAGACTTTGATCTAACTTG+GGG 0.623881 3.2:+72845915 MS.gene77555:CDS
TTGCAATGCAGAATCAGAGA+AGG 0.624929 3.2:-72847151 None:intergenic
CACCATTGAATATCTTAGCA+CGG 0.635606 3.2:-72845944 None:intergenic
TGGTAGAAGAAGATTGAGGT+GGG 0.642709 3.2:+72847194 MS.gene77555:CDS
ATGGTGCAGTTATCATCACA+AGG 0.643718 3.2:+72846640 MS.gene77555:intron
GCTGATGATTGGGCTACAAG+AGG 0.647339 3.2:+72847036 MS.gene77555:CDS
GATCTTAAGCGATTCCCAGA+AGG 0.649786 3.2:+72847252 MS.gene77555:CDS
GGAAGAGATAGATGATAACT+CGG 0.649852 3.2:-72847124 None:intergenic
GTAAGCAGTGACGGTTCCAG+CGG 0.667054 3.2:-72846078 None:intergenic
ACGTACGTAGTAAGCAGTGA+CGG 0.675655 3.2:-72846087 None:intergenic
CGTGCTAAGATATTCAATGG+TGG 0.692895 3.2:+72845945 MS.gene77555:CDS
TGGTGCAGTTATCATCACAA+GGG 0.717771 3.2:+72846641 MS.gene77555:intron
CATTGAATATCTTAGCACGG+TGG 0.785980 3.2:-72845941 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTCTATCTAATTAATT+CGG + chr3.2:72846115-72846134 MS.gene77555:intron 10.0%
!! ATTAATTAGATAGAAAAAAG+AGG - chr3.2:72846114-72846133 None:intergenic 15.0%
!! GAATATAATATATAAATGTG+AGG - chr3.2:72846289-72846308 None:intergenic 15.0%
!! ATAATATATAAATGTGAGGA+AGG - chr3.2:72846285-72846304 None:intergenic 20.0%
!! ATATTACTTACATAATGTGT+TGG - chr3.2:72846834-72846853 None:intergenic 20.0%
!! TATTACTTACATAATGTGTT+GGG - chr3.2:72846833-72846852 None:intergenic 20.0%
!! TGAGATTAGAACATAAATAA+CGG - chr3.2:72846387-72846406 None:intergenic 20.0%
!!! TAGAAGTATATGATTTTCAA+TGG + chr3.2:72846621-72846640 MS.gene77555:intron 20.0%
! ATAAATACTCTTTCTTCGAT+TGG - chr3.2:72846016-72846035 None:intergenic 25.0%
! ATTACTTACATAATGTGTTG+GGG - chr3.2:72846832-72846851 None:intergenic 25.0%
! GTACAAAGTTACATATAACT+TGG - chr3.2:72846484-72846503 None:intergenic 25.0%
!! AAGTGTAGTTTTTGCAAAAA+TGG + chr3.2:72846200-72846219 MS.gene77555:intron 25.0%
!! TAACGGTTGTATTTTTCATA+TGG - chr3.2:72846370-72846389 None:intergenic 25.0%
!!! GAAATAGATTTTGAGTTCTT+GGG + chr3.2:72846676-72846695 MS.gene77555:CDS 25.0%
!!! TCGAAGAAAGAGTATTTATT+TGG + chr3.2:72846017-72846036 MS.gene77555:CDS 25.0%
!!! TGAAATAGATTTTGAGTTCT+TGG + chr3.2:72846675-72846694 MS.gene77555:CDS 25.0%
!!! TTACATATAACTTGGTTTGT+GGG - chr3.2:72846476-72846495 None:intergenic 25.0%
AAATCTATTTCATCGTGTGT+TGG - chr3.2:72846667-72846686 None:intergenic 30.0%
ACGTTTGTATGAAGAATGTA+AGG - chr3.2:72846718-72846737 None:intergenic 30.0%
AGACTTGAATAGATTCTCAT+TGG - chr3.2:72847009-72847028 None:intergenic 30.0%
CATTCTTGAAGATCCTTATA+GGG - chr3.2:72846951-72846970 None:intergenic 30.0%
TGTCGTGAATGCATAAATAA+CGG - chr3.2:72846432-72846451 None:intergenic 30.0%
TTCAAGAATGCTGAATCAAT+TGG + chr3.2:72846961-72846980 MS.gene77555:CDS 30.0%
TTGAATAGATTCTCATTGGT+TGG - chr3.2:72847005-72847024 None:intergenic 30.0%
TTGCAAAATCATTGTAACAC+TGG + chr3.2:72846163-72846182 MS.gene77555:intron 30.0%
TTTCAAAAGCAACTTTACCT+TGG + chr3.2:72846315-72846334 MS.gene77555:intron 30.0%
! GTTACATATAACTTGGTTTG+TGG - chr3.2:72846477-72846496 None:intergenic 30.0%
! TGTAGTTTTTGCAAAAATGG+TGG + chr3.2:72846203-72846222 MS.gene77555:intron 30.0%
!! AATTCGGTGTATGATTAGAT+TGG + chr3.2:72846131-72846150 MS.gene77555:intron 30.0%
!! TAGTTATACGAACTTGTTAG+CGG - chr3.2:72846903-72846922 None:intergenic 30.0%
!! TAGTTGATAACATCCCTATA+AGG + chr3.2:72846935-72846954 MS.gene77555:CDS 30.0%
!! TAGTTTGCTTCTTTGTATTG+CGG + chr3.2:72846586-72846605 MS.gene77555:intron 30.0%
ACCAAGACTTTGATCTAACT+TGG + chr3.2:72845913-72845932 MS.gene77555:CDS 35.0%
AGTCATGATAATTAGCTCCT+TGG + chr3.2:72845866-72845885 MS.gene77555:CDS 35.0%
CAAGACTTTGATCTAACTTG+GGG + chr3.2:72845915-72845934 MS.gene77555:CDS 35.0%
CACCATTGAATATCTTAGCA+CGG - chr3.2:72845947-72845966 None:intergenic 35.0%
CATATGGTAGAAGAAGATTG+AGG + chr3.2:72847190-72847209 MS.gene77555:CDS 35.0%
CATTTGATATCAAGAAGCCA+AGG - chr3.2:72846335-72846354 None:intergenic 35.0%
CCAAGACTTTGATCTAACTT+GGG + chr3.2:72845914-72845933 MS.gene77555:CDS 35.0%
GAGAACAACAATTCTACCTT+TGG + chr3.2:72846761-72846780 MS.gene77555:CDS 35.0%
GCATTCTTGAAGATCCTTAT+AGG - chr3.2:72846952-72846971 None:intergenic 35.0%
GGAAGAGATAGATGATAACT+CGG - chr3.2:72847127-72847146 None:intergenic 35.0%
TATATAAATGTGAGGAAGGC+AGG - chr3.2:72846281-72846300 None:intergenic 35.0%
TCTTTCTCTAGACAAAACCT+CGG + chr3.2:72845980-72845999 MS.gene77555:CDS 35.0%
TGAGAATCTATTCAAGTCTC+TGG + chr3.2:72847010-72847029 MS.gene77555:CDS 35.0%
TTGTGGTAGTAAGCTGTAAA+TGG - chr3.2:72847093-72847112 None:intergenic 35.0%
! AGTTTTTGCAAAAATGGTGG+TGG + chr3.2:72846206-72846225 MS.gene77555:intron 35.0%
! ATTCTCATTGGTTGGTTCTT+TGG - chr3.2:72846997-72847016 None:intergenic 35.0%
! CATACAAACGTGTTTTCTCA+AGG + chr3.2:72846727-72846746 MS.gene77555:CDS 35.0%
! TTCTCATTGGTTGGTTCTTT+GGG - chr3.2:72846996-72847015 None:intergenic 35.0%
!! TATAACTTGGTTTGTGGGTT+TGG - chr3.2:72846471-72846490 None:intergenic 35.0%
AAGTGTGGAAGTTCTTGGTT+GGG - chr3.2:72846792-72846811 None:intergenic 40.0%
AGAGTAAGTGTGGAAGTTCT+TGG - chr3.2:72846797-72846816 None:intergenic 40.0%
AGCAATGAGCTTGATGCATA+TGG + chr3.2:72847174-72847193 MS.gene77555:CDS 40.0%
ATGGTAGAAGAAGATTGAGG+TGG + chr3.2:72847193-72847212 MS.gene77555:CDS 40.0%
ATGGTGCAGTTATCATCACA+AGG + chr3.2:72846640-72846659 MS.gene77555:intron 40.0%
CACCGTGCTAAGATATTCAA+TGG + chr3.2:72845942-72845961 MS.gene77555:CDS 40.0%
CATTGAATATCTTAGCACGG+TGG - chr3.2:72845944-72845963 None:intergenic 40.0%
CCCAAGTTAGATCAAAGTCT+TGG - chr3.2:72845917-72845936 None:intergenic 40.0%
CGTGCTAAGATATTCAATGG+TGG + chr3.2:72845945-72845964 MS.gene77555:CDS 40.0%
CTTTCTCTAGACAAAACCTC+GGG + chr3.2:72845981-72846000 MS.gene77555:CDS 40.0%
GAGTTCTTGGGAAATGTTAG+CGG + chr3.2:72846688-72846707 MS.gene77555:CDS 40.0%
GGCATGAACAATATGCTGAT+TGG + chr3.2:72845843-72845862 MS.gene77555:CDS 40.0%
GTAAGCTGTAAATGGTGCTT+TGG - chr3.2:72847085-72847104 None:intergenic 40.0%
TAAGTGTGGAAGTTCTTGGT+TGG - chr3.2:72846793-72846812 None:intergenic 40.0%
TCCACACTTACTCTATCATC+TGG + chr3.2:72846803-72846822 MS.gene77555:CDS 40.0%
TCCAGATGATAGAGTAAGTG+TGG - chr3.2:72846807-72846826 None:intergenic 40.0%
TGGTAGAAGAAGATTGAGGT+GGG + chr3.2:72847194-72847213 MS.gene77555:CDS 40.0%
TGGTGCAGTTATCATCACAA+GGG + chr3.2:72846641-72846660 MS.gene77555:intron 40.0%
TTGCAATGCAGAATCAGAGA+AGG - chr3.2:72847154-72847173 None:intergenic 40.0%
! AACGTGTTTTCTCAAGGCAA+AGG + chr3.2:72846733-72846752 MS.gene77555:CDS 40.0%
! ATTGGTTGGTTCTTTGGGAA+TGG - chr3.2:72846991-72847010 None:intergenic 40.0%
!! ACTCGGTAGCTTTGAAATTG+TGG - chr3.2:72847110-72847129 None:intergenic 40.0%
!! GTGGTTTGGTGAAAACTGAT+TGG + chr3.2:72847058-72847077 MS.gene77555:CDS 40.0%
ACGTACGTAGTAAGCAGTGA+CGG - chr3.2:72846090-72846109 None:intergenic 45.0%
ACTCTGCAGGAATACCTTCT+GGG - chr3.2:72847269-72847288 None:intergenic 45.0%
AGCAGAACATGTAGCTACCA+AGG - chr3.2:72845886-72845905 None:intergenic 45.0%
ATGCAACTCAAACTCGTTGC+TGG + chr3.2:72846050-72846069 MS.gene77555:CDS 45.0%
GATCTTAAGCGATTCCCAGA+AGG + chr3.2:72847252-72847271 MS.gene77555:CDS 45.0%
TCTTGGTTGGGTCAAACCAA+AGG - chr3.2:72846780-72846799 None:intergenic 45.0%
TGCAGAATCAGAGAAGGAAG+TGG - chr3.2:72847148-72847167 None:intergenic 45.0%
!! TCTCTGGAACGCTGATGATT+GGG + chr3.2:72847026-72847045 MS.gene77555:CDS 45.0%
CACTCTGCAGGAATACCTTC+TGG - chr3.2:72847270-72847289 None:intergenic 50.0%
GATGATTGGGCTACAAGAGG+TGG + chr3.2:72847039-72847058 MS.gene77555:CDS 50.0%
GCTGATGATTGGGCTACAAG+AGG + chr3.2:72847036-72847055 MS.gene77555:CDS 50.0%
TTGGGCTACAAGAGGTGGTT+TGG + chr3.2:72847044-72847063 MS.gene77555:CDS 50.0%
!! CTTGGTTTGTGGGTTTGGTG+CGG - chr3.2:72846466-72846485 None:intergenic 50.0%
!! GTCTCTGGAACGCTGATGAT+TGG + chr3.2:72847025-72847044 MS.gene77555:CDS 50.0%
CTAGACAAAACCTCGGGCTC+TGG + chr3.2:72845987-72846006 MS.gene77555:CDS 55.0%
GTAAGCAGTGACGGTTCCAG+CGG - chr3.2:72846081-72846100 None:intergenic 55.0%
CTCGTTGCTGGAAACTCCGC+TGG + chr3.2:72846062-72846081 MS.gene77555:CDS 60.0%
CTGCAGAGTGCAAGCGTCCA+AGG + chr3.2:72847280-72847299 MS.gene77555:CDS 60.0%
CTTGGACGCTTGCACTCTGC+AGG - chr3.2:72847282-72847301 None:intergenic 60.0%
CGATTGGAAGCCAGAGCCCG+AGG - chr3.2:72846000-72846019 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr3.2 gene 72845828 72847308 72845828 ID=MS.gene77555
chr3.2 mRNA 72845828 72847308 72845828 ID=MS.gene77555.t1;Parent=MS.gene77555
chr3.2 exon 72845828 72846103 72845828 ID=MS.gene77555.t1.exon1;Parent=MS.gene77555.t1
chr3.2 CDS 72845828 72846103 72845828 ID=cds.MS.gene77555.t1;Parent=MS.gene77555.t1
chr3.2 exon 72846649 72846842 72846649 ID=MS.gene77555.t1.exon2;Parent=MS.gene77555.t1
chr3.2 CDS 72846649 72846842 72846649 ID=cds.MS.gene77555.t1;Parent=MS.gene77555.t1
chr3.2 exon 72846930 72847308 72846930 ID=MS.gene77555.t1.exon3;Parent=MS.gene77555.t1
chr3.2 CDS 72846930 72847308 72846930 ID=cds.MS.gene77555.t1;Parent=MS.gene77555.t1
Gene Sequence

>MS.gene77555

ATGGCTTCTTCTATTGGCATGAACAATATGCTGATTGGAGTCATGATAATTAGCTCCTTGGTAGCTACATGTTCTGCTAACTTCAACCAAGACTTTGATCTAACTTGGGGTGACCACCGTGCTAAGATATTCAATGGTGGTCAACTTCTATCTCTTTCTCTAGACAAAACCTCGGGCTCTGGCTTCCAATCGAAGAAAGAGTATTTATTTGGTAGAATTGATATGCAACTCAAACTCGTTGCTGGAAACTCCGCTGGAACCGTCACTGCTTACTACGTACGTACCTCTTTTTTCTATCTAATTAATTCGGTGTATGATTAGATTGGTTGTGTGTTTTGCAAAATCATTGTAACACTGGTTTCTGAAACTATGAAGTGTAGTTTTTGCAAAAATGGTGGTGGCTCACAATGATTTTCACAAACGTATAAATGCATATAGTTTGATTCTTTTCCTGCCTTCCTCACATTTATATATTATATTCTCTCTTTTTCAAAAGCAACTTTACCTTGGCTTCTTGATATCAAATGCATTAATTTTCTCCATATGAAAAATACAACCGTTATTTATGTTCTAATCTCATTAAATATAACTGTTATTTGAACCGTTATTTATGCATTCACGACATATAAACTCTACCGCACCAAACCCACAAACCAAGTTATATGTAACTTTGTACTAGTATACGTAATTATTTTTTTCAATTTTTTTCTATATACAAACACAATGAATTTCACGAGCAATTTTTTGTGTTCTGTTTCTAGTTTGCTTCTTTGTATTGCGGTGTTGTCAATAATAGAAGTATATGATTTTCAATGGTGCAGTTATCATCACAAGGGCCAACACACGATGAAATAGATTTTGAGTTCTTGGGAAATGTTAGCGGTGATCCTTACATTCTTCATACAAACGTGTTTTCTCAAGGCAAAGGAAACAGAGAACAACAATTCTACCTTTGGTTTGACCCAACCAAGAACTTCCACACTTACTCTATCATCTGGAAGCCCCAACACATTATGTAAGTAATATATATTTAAGTTTGATCAAACAGCTCAATTAAGCGCTTATAAAAAAACCGCTAACAAGTTCGTATAACTAAATGCAGATTTTTAGTTGATAACATCCCTATAAGGATCTTCAAGAATGCTGAATCAATTGGTATTCCATTCCCAAAGAACCAACCAATGAGAATCTATTCAAGTCTCTGGAACGCTGATGATTGGGCTACAAGAGGTGGTTTGGTGAAAACTGATTGGTCCAAAGCACCATTTACAGCTTACTACCACAATTTCAAAGCTACCGAGTTATCATCTATCTCTTCCACTTCCTTCTCTGATTCTGCATTGCAAAGCAATGAGCTTGATGCATATGGTAGAAGAAGATTGAGGTGGGTTCAGAAGTACTTCATGATCTATAACTACTGCAACGATCTTAAGCGATTCCCAGAAGGTATTCCTGCAGAGTGCAAGCGTCCAAGGTTCTGA
Protein sequence

>MS.gene77555.t1

MASSIGMNNMLIGVMIISSLVATCSANFNQDFDLTWGDHRAKIFNGGQLLSLSLDKTSGSGFQSKKEYLFGRIDMQLKLVAGNSAGTVTAYYLSSQGPTHDEIDFEFLGNVSGDPYILHTNVFSQGKGNREQQFYLWFDPTKNFHTYSIIWKPQHIIFLVDNIPIRIFKNAESIGIPFPKNQPMRIYSSLWNADDWATRGGLVKTDWSKAPFTAYYHNFKATELSSISSTSFSDSALQSNELDAYGRRRLRWVQKYFMIYNYCNDLKRFPEGIPAECKRPRF