AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene77556

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene77556.t1 MTR_3g084630 97.872 282 6 0 1 282 1 282 0.0 580
MS.gene77556.t1 MTR_3g084620 97.518 282 7 0 1 282 1 282 0.0 577
MS.gene77556.t1 MTR_8g102220 85.816 282 27 3 1 281 1 270 4.78e-178 491
MS.gene77556.t1 MTR_8g081040 86.245 269 35 2 10 277 14 281 2.42e-177 490
MS.gene77556.t1 MTR_4g128410 71.956 271 70 1 14 278 11 281 3.64e-144 406
MS.gene77556.t1 MTR_7g093530 72.222 270 69 1 14 277 10 279 1.50e-141 399
MS.gene77556.t1 MTR_4g128580 72.285 267 64 1 21 277 19 285 1.70e-139 394
MS.gene77556.t1 MTR_4g128570 68.015 272 78 2 7 277 9 272 2.53e-136 386
MS.gene77556.t1 MTR_4g128400 65.455 275 84 2 14 277 9 283 1.25e-132 377
MS.gene77556.t1 MTR_2g038860 66.547 278 82 1 11 277 9 286 4.95e-132 376
MS.gene77556.t1 MTR_2g038705 66.547 278 82 1 11 277 9 286 4.95e-132 376
MS.gene77556.t1 MTR_4g126920 67.300 263 79 1 22 277 19 281 2.82e-131 374
MS.gene77556.t1 MTR_4g128590 64.948 291 72 4 1 277 1 275 6.37e-130 370
MS.gene77556.t1 MTR_5g091730 55.172 261 110 3 26 281 26 284 2.88e-106 310
MS.gene77556.t1 MTR_7g084770 52.740 292 126 3 1 281 1 291 5.68e-106 310
MS.gene77556.t1 MTR_7g084760 52.069 290 127 3 1 279 1 289 2.83e-104 305
MS.gene77556.t1 MTR_6g033055 51.027 292 131 3 1 281 1 291 1.60e-103 303
MS.gene77556.t1 MTR_7g084750 51.370 292 130 4 1 281 1 291 1.33e-102 301
MS.gene77556.t1 MTR_6g033085 51.027 292 131 3 1 281 1 291 2.15e-102 301
MS.gene77556.t1 MTR_8g102910 51.748 286 123 5 10 282 1 284 5.01e-101 297
MS.gene77556.t1 MTR_6g088320 49.117 283 131 3 10 282 9 288 6.51e-97 286
MS.gene77556.t1 MTR_3g089540 50.973 257 123 1 26 279 28 284 5.11e-96 284
MS.gene77556.t1 MTR_4g045853 49.286 280 122 5 14 277 13 288 7.64e-95 281
MS.gene77556.t1 MTR_2g089140 49.650 286 123 7 11 279 7 288 1.08e-94 281
MS.gene77556.t1 MTR_1g105900 47.810 274 133 2 17 282 25 296 2.79e-94 280
MS.gene77556.t1 MTR_4g097640 48.387 279 135 4 6 277 11 287 4.22e-93 277
MS.gene77556.t1 MTR_4g097670 48.387 279 135 4 6 277 11 287 4.22e-93 277
MS.gene77556.t1 MTR_4g097700 50.193 259 121 3 26 277 67 324 4.50e-92 276
MS.gene77556.t1 MTR_1g105495 44.604 278 142 3 11 277 18 294 9.35e-84 253
MS.gene77556.t1 MTR_2g089140 52.655 226 91 4 69 279 1 225 3.49e-83 249
MS.gene77556.t1 MTR_8g013055 44.615 260 129 4 28 277 31 285 4.39e-78 238
MS.gene77556.t1 MTR_7g102260 41.961 255 132 5 25 268 34 283 2.64e-63 201
MS.gene77556.t1 MTR_7g056090 39.350 277 152 7 1 265 1 273 1.40e-62 199
MS.gene77556.t1 MTR_2g095800 41.065 263 136 6 18 268 46 301 2.34e-60 194
MS.gene77556.t1 MTR_4g057450 41.667 264 133 7 27 277 49 304 4.04e-60 193
MS.gene77556.t1 MTR_1g063020 40.152 264 141 6 25 277 37 294 2.61e-59 191
MS.gene77556.t1 MTR_2g049130 38.610 259 142 7 28 278 29 278 6.13e-56 182
MS.gene77556.t1 MTR_1g033420 37.548 261 150 6 28 277 33 291 2.75e-52 174
MS.gene77556.t1 MTR_2g049030 35.714 252 148 6 28 271 30 275 2.75e-51 170
MS.gene77556.t1 MTR_5g029100 35.714 266 153 7 28 277 42 305 2.63e-50 169
MS.gene77556.t1 MTR_8g064180 34.586 266 151 8 32 278 50 311 1.54e-49 166
MS.gene77556.t1 MTR_5g029100 32.746 284 163 8 10 277 3 274 7.40e-46 157
MS.gene77556.t1 MTR_8g090100 34.601 263 157 5 28 277 21 281 1.73e-44 153
MS.gene77556.t1 MTR_8g479340 30.769 195 54 8 97 277 8 135 1.38e-16 75.1
MS.gene77556.t1 MTR_8g032640 32.558 172 108 5 50 219 33 198 1.13e-13 68.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene77556.t1 AT3G23730 72.378 286 68 2 7 281 5 290 2.97e-164 457
MS.gene77556.t1 AT4G14130 73.264 288 70 2 1 281 1 288 2.67e-163 455
MS.gene77556.t1 AT4G25810 65.091 275 88 1 11 277 9 283 5.53e-133 378
MS.gene77556.t1 AT4G30270 64.773 264 85 1 14 277 10 265 4.98e-130 370
MS.gene77556.t1 AT5G57550 60.424 283 107 2 1 278 1 283 1.81e-129 369
MS.gene77556.t1 AT5G57560 63.670 267 88 1 20 277 15 281 6.51e-129 368
MS.gene77556.t1 AT5G57530 63.846 260 86 2 25 277 24 282 8.07e-124 355
MS.gene77556.t1 AT5G57540 62.692 260 89 2 25 277 23 281 1.41e-122 352
MS.gene77556.t1 AT2G18800 58.571 280 97 2 17 277 17 296 2.65e-121 349
MS.gene77556.t1 AT4G25820 63.534 266 89 2 20 278 22 286 1.60e-120 347
MS.gene77556.t1 AT5G48070 60.156 256 99 2 25 277 26 281 1.85e-117 338
MS.gene77556.t1 AT4G30290 58.672 271 109 2 10 277 6 276 1.07e-109 318
MS.gene77556.t1 AT4G30280 60.156 256 99 2 25 277 26 281 1.20e-108 316
MS.gene77556.t1 AT1G65310 60.000 260 101 2 21 277 44 303 3.54e-108 316
MS.gene77556.t1 AT1G65310 60.000 260 101 2 21 277 22 281 3.71e-108 315
MS.gene77556.t1 AT5G13870 52.313 281 124 3 10 281 12 291 5.64e-102 300
MS.gene77556.t1 AT5G13870 52.313 281 124 3 10 281 12 291 5.64e-102 300
MS.gene77556.t1 AT5G13870 52.313 281 124 3 10 281 12 291 5.64e-102 300
MS.gene77556.t1 AT2G06850 55.556 261 108 2 28 281 35 294 2.16e-100 296
MS.gene77556.t1 AT4G03210 48.936 282 130 5 10 281 11 288 3.90e-96 285
MS.gene77556.t1 AT2G14620 45.833 288 141 2 10 282 12 299 1.81e-94 281
MS.gene77556.t1 AT2G06850 57.143 231 91 2 58 281 5 234 7.13e-93 275
MS.gene77556.t1 AT4G28850 48.252 286 132 5 10 282 10 292 1.09e-92 276
MS.gene77556.t1 AT5G65730 48.727 275 127 5 14 278 21 291 1.02e-91 273
MS.gene77556.t1 AT4G37800 48.120 266 126 4 21 277 27 289 7.17e-89 266
MS.gene77556.t1 AT4G03210 52.381 231 100 3 60 281 31 260 5.00e-87 260
MS.gene77556.t1 AT1G11545 44.027 293 147 5 1 277 8 299 1.28e-85 258
MS.gene77556.t1 AT2G14620 48.276 232 112 1 59 282 18 249 1.16e-82 249
MS.gene77556.t1 AT2G14620 48.879 223 106 1 68 282 16 238 1.30e-80 243
MS.gene77556.t1 AT4G13090 40.893 291 151 4 7 278 1 289 3.16e-75 231
MS.gene77556.t1 AT3G25050 41.313 259 139 3 28 277 35 289 3.57e-74 229
MS.gene77556.t1 AT4G13080 45.038 262 125 7 28 278 39 292 3.88e-72 224
MS.gene77556.t1 AT2G36870 42.857 266 135 6 25 279 40 299 1.17e-63 202
MS.gene77556.t1 AT3G44990 40.221 271 143 8 18 277 31 293 1.10e-58 189
MS.gene77556.t1 AT1G14720 34.783 299 170 7 7 281 4 301 1.30e-53 177
MS.gene77556.t1 AT1G32170 35.439 285 158 7 16 277 12 293 8.06e-53 176
MS.gene77556.t1 AT1G10550 34.926 272 142 8 32 277 47 309 3.57e-52 173
MS.gene77556.t1 AT2G01850 31.773 299 179 6 7 281 4 301 7.70e-51 170
MS.gene77556.t1 AT4G18990 34.601 263 140 7 50 282 62 322 1.88e-44 154
MS.gene77556.t1 AT3G48580 33.603 247 146 7 35 277 41 273 3.36e-43 149
MS.gene77556.t1 AT4G18990 33.755 237 121 8 77 282 17 248 5.07e-37 133
MS.gene77556.t1 AT3G48580 31.696 224 136 6 58 277 4 214 2.00e-36 129
MS.gene77556.t1 AT2G36870 43.262 141 70 3 25 157 40 178 3.04e-30 112
MS.gene77556.t1 AT3G48580 29.555 247 136 8 35 277 41 253 1.10e-27 107

Find 64 sgRNAs with CRISPR-Local

Find 74 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTCTCATTGGTTGGTTCTT+TGG 0.220550 3.2:-72855706 None:intergenic
TTCTCATTGGTTGGTTCTTT+GGG 0.221209 3.2:-72855705 None:intergenic
TCGAAGAAAGAGTATTTATT+TGG 0.223648 3.2:+72855073 MS.gene77556:CDS
TGAGAATCTATTCAAGTCTT+TGG 0.232577 3.2:+72855722 MS.gene77556:CDS
GCATTCTTGAAGATCCTTAT+AGG 0.241455 3.2:-72855661 None:intergenic
ATTAATATGGCTTCTTCTAT+TGG 0.241934 3.2:+72854878 None:intergenic
GTCTTTGGAACGCTGATGAT+TGG 0.331629 3.2:+72855737 MS.gene77556:CDS
CACTCAGCAGGAATACCTTC+TGG 0.340561 3.2:-72855979 None:intergenic
CATTCTTGAAGATCCTTATA+GGG 0.350905 3.2:-72855660 None:intergenic
TAGTTGATAACATCCCTATA+AGG 0.361735 3.2:+72855647 MS.gene77556:CDS
TATTACTTACATAATGTGTT+GGG 0.366572 3.2:-72855542 None:intergenic
TTGCGGTAGTAAGCTGTAAA+TGG 0.368145 3.2:-72855802 None:intergenic
GAGAACAACAATTCTACCTT+TGG 0.383624 3.2:+72855473 MS.gene77556:CDS
ACCAAGACTTTGATCTAACT+TGG 0.385781 3.2:+72854969 MS.gene77556:CDS
ATTGGTTGGTTCTTTGGGAA+TGG 0.395735 3.2:-72855700 None:intergenic
ATGCAACTCAAACTTGTTGC+TGG 0.403109 3.2:+72855106 MS.gene77556:CDS
AGACTTGAATAGATTCTCAT+TGG 0.409589 3.2:-72855718 None:intergenic
ATAAATACTCTTTCTTCGAT+TGG 0.413180 3.2:-72855069 None:intergenic
AGCAATGAACTTGATGCTTA+TGG 0.415779 3.2:+72855886 MS.gene77556:CDS
CTTGTTGCTGGAAATTCTGC+TGG 0.421705 3.2:+72855118 MS.gene77556:CDS
TTCAAGAATGCTGAATCAAT+TGG 0.430099 3.2:+72855673 MS.gene77556:CDS
AGAGTAAGTGTGGAAGTTCT+TGG 0.438651 3.2:-72855506 None:intergenic
CTAGACAAAACCTCGGGCTC+TGG 0.447506 3.2:+72855043 MS.gene77556:CDS
TCTTTGGAACGCTGATGATT+GGG 0.453325 3.2:+72855738 MS.gene77556:CDS
TCCACACTTACTCTATCATC+TGG 0.453939 3.2:+72855515 MS.gene77556:CDS
GTAAGCTGTAAATGGTGCTT+TGG 0.464723 3.2:-72855794 None:intergenic
TTGAATAGATTCTCATTGGT+TGG 0.466553 3.2:-72855714 None:intergenic
ATATTACTTACATAATGTGT+TGG 0.469145 3.2:-72855543 None:intergenic
CTGCTGAGTGCAAGCGTCCA+AGG 0.485478 3.2:+72855992 MS.gene77556:CDS
TCATTGATCTCTCAGAACCT+TGG 0.486786 3.2:-72856009 None:intergenic
ACTCAGCAGGAATACCTTCT+GGG 0.494454 3.2:-72855978 None:intergenic
AAGTGTGGAAGTTCTTGGTT+GGG 0.498153 3.2:-72855501 None:intergenic
CTTGGACGCTTGCACTCAGC+AGG 0.499944 3.2:-72855991 None:intergenic
AGTTACGATAATTAGCTCCT+TGG 0.505884 3.2:+72854922 MS.gene77556:CDS
TTGGGCTACAAGAGGTGGTT+TGG 0.508778 3.2:+72855756 MS.gene77556:CDS
CCAAGACTTTGATCTAACTT+GGG 0.509119 3.2:+72854970 MS.gene77556:CDS
CACCGTGCTAAGATATTCAA+TGG 0.512465 3.2:+72854998 MS.gene77556:CDS
ACGTTTGTATGAAGAATGTA+AGG 0.516073 3.2:-72855427 None:intergenic
CCCAAGTTAGATCAAAGTCT+TGG 0.522663 3.2:-72854970 None:intergenic
GGCATGAACAATATGCTGAT+TGG 0.535335 3.2:+72854899 MS.gene77556:CDS
AAATCTATTTCATCATGAGT+TGG 0.536081 3.2:-72855376 None:intergenic
GAGTTCTTGGGAAATGTTAG+CGG 0.540045 3.2:+72855400 MS.gene77556:CDS
ATGGTAGAAGAAGATTGAGA+TGG 0.542822 3.2:+72855905 MS.gene77556:CDS
TAAGTGTGGAAGTTCTTGGT+TGG 0.544799 3.2:-72855502 None:intergenic
GTGGTTTGGTGAAAACTGAT+TGG 0.548484 3.2:+72855770 MS.gene77556:CDS
TGCAGAATCAGAGAAGGAAG+TGG 0.555907 3.2:-72855857 None:intergenic
ACTCAGTAGCTTTGAAATTG+CGG 0.559212 3.2:-72855819 None:intergenic
ATTACTTACATAATGTGTTG+GGG 0.569004 3.2:-72855541 None:intergenic
CGATTGGAAGCCAGAGCCCG+AGG 0.573236 3.2:-72855053 None:intergenic
GATGATTGGGCTACAAGAGG+TGG 0.583367 3.2:+72855751 MS.gene77556:CDS
TCCAGATGATAGAGTAAGTG+TGG 0.584360 3.2:-72855516 None:intergenic
AGCAGAACATGTAGCTACCA+AGG 0.586171 3.2:-72854939 None:intergenic
TGGTAGAAGAAGATTGAGAT+GGG 0.586469 3.2:+72855906 MS.gene77556:CDS
TCTTGGTTGGGTCAAACCAA+AGG 0.586504 3.2:-72855489 None:intergenic
CTTTCTCTAGACAAAACCTC+GGG 0.590397 3.2:+72855037 MS.gene77556:CDS
CTGCATTGCAGAATCAGAGA+AGG 0.608965 3.2:-72855863 None:intergenic
TCTTTCTCTAGACAAAACCT+CGG 0.610000 3.2:+72855036 MS.gene77556:CDS
GAAGGAAGTGGAAGAGACAG+AGG 0.615542 3.2:-72855845 None:intergenic
CAAGACTTTGATCTAACTTG+GGG 0.623881 3.2:+72854971 MS.gene77556:CDS
CACCATTGAATATCTTAGCA+CGG 0.635606 3.2:-72855000 None:intergenic
GCTGATGATTGGGCTACAAG+AGG 0.647339 3.2:+72855748 MS.gene77556:CDS
GATCTTAAGCGATTCCCAGA+AGG 0.649786 3.2:+72855964 MS.gene77556:CDS
CGTGCTAAGATATTCAATGG+TGG 0.692895 3.2:+72855001 MS.gene77556:CDS
ATGGTGCAGTTGTCATCACA+AGG 0.694897 3.2:+72855352 MS.gene77556:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTAAATAAAGTTACTTT+TGG - chr3.2:72855231-72855250 None:intergenic 10.0%
!! AATATATGGTATACTATATG+AGG - chr3.2:72855197-72855216 None:intergenic 20.0%
!! ATATTACTTACATAATGTGT+TGG - chr3.2:72855546-72855565 None:intergenic 20.0%
!! TATTACTTACATAATGTGTT+GGG - chr3.2:72855545-72855564 None:intergenic 20.0%
!! TGGAAATGAATTAGAATATA+TGG - chr3.2:72855211-72855230 None:intergenic 20.0%
!!! TTTTGTATTGTGGTAAATAA+CGG + chr3.2:72855315-72855334 MS.gene77556:intron 20.0%
! AAATCTATTTCATCATGAGT+TGG - chr3.2:72855379-72855398 None:intergenic 25.0%
! ATAAATACTCTTTCTTCGAT+TGG - chr3.2:72855072-72855091 None:intergenic 25.0%
! ATTACTTACATAATGTGTTG+GGG - chr3.2:72855544-72855563 None:intergenic 25.0%
!!! GAAATAGATTTTGAGTTCTT+GGG + chr3.2:72855388-72855407 MS.gene77556:CDS 25.0%
!!! TCGAAGAAAGAGTATTTATT+TGG + chr3.2:72855073-72855092 MS.gene77556:CDS 25.0%
!!! TGAAATAGATTTTGAGTTCT+TGG + chr3.2:72855387-72855406 MS.gene77556:CDS 25.0%
AACGGTACTATATGCATATA+TGG + chr3.2:72855333-72855352 MS.gene77556:intron 30.0%
ACGTTTGTATGAAGAATGTA+AGG - chr3.2:72855430-72855449 None:intergenic 30.0%
AGACTTGAATAGATTCTCAT+TGG - chr3.2:72855721-72855740 None:intergenic 30.0%
CATTCTTGAAGATCCTTATA+GGG - chr3.2:72855663-72855682 None:intergenic 30.0%
CTATATGAGGAAGTAAAGAA+AGG - chr3.2:72855184-72855203 None:intergenic 30.0%
TGAGAATCTATTCAAGTCTT+TGG + chr3.2:72855722-72855741 MS.gene77556:CDS 30.0%
TTCAAGAATGCTGAATCAAT+TGG + chr3.2:72855673-72855692 MS.gene77556:CDS 30.0%
TTGAATAGATTCTCATTGGT+TGG - chr3.2:72855717-72855736 None:intergenic 30.0%
! TTGCTTCTTCTTTTGTATTG+TGG + chr3.2:72855305-72855324 MS.gene77556:intron 30.0%
!! TAGTTATACGAACTTGTTAG+CGG - chr3.2:72855615-72855634 None:intergenic 30.0%
!! TAGTTGATAACATCCCTATA+AGG + chr3.2:72855647-72855666 MS.gene77556:CDS 30.0%
ACCAAGACTTTGATCTAACT+TGG + chr3.2:72854969-72854988 MS.gene77556:CDS 35.0%
AGCAATGAACTTGATGCTTA+TGG + chr3.2:72855886-72855905 MS.gene77556:CDS 35.0%
AGTTACGATAATTAGCTCCT+TGG + chr3.2:72854922-72854941 MS.gene77556:CDS 35.0%
ATGGTAGAAGAAGATTGAGA+TGG + chr3.2:72855905-72855924 MS.gene77556:CDS 35.0%
CAAGACTTTGATCTAACTTG+GGG + chr3.2:72854971-72854990 MS.gene77556:CDS 35.0%
CACCATTGAATATCTTAGCA+CGG - chr3.2:72855003-72855022 None:intergenic 35.0%
CCAAGACTTTGATCTAACTT+GGG + chr3.2:72854970-72854989 MS.gene77556:CDS 35.0%
GAGAACAACAATTCTACCTT+TGG + chr3.2:72855473-72855492 MS.gene77556:CDS 35.0%
GCATTCTTGAAGATCCTTAT+AGG - chr3.2:72855664-72855683 None:intergenic 35.0%
TCTTTCTCTAGACAAAACCT+CGG + chr3.2:72855036-72855055 MS.gene77556:CDS 35.0%
TGGTAGAAGAAGATTGAGAT+GGG + chr3.2:72855906-72855925 MS.gene77556:CDS 35.0%
! ATTCTCATTGGTTGGTTCTT+TGG - chr3.2:72855709-72855728 None:intergenic 35.0%
! CATACAAACGTGTTTTCTCA+AGG + chr3.2:72855439-72855458 MS.gene77556:CDS 35.0%
! TTCTCATTGGTTGGTTCTTT+GGG - chr3.2:72855708-72855727 None:intergenic 35.0%
!! ACTCAGTAGCTTTGAAATTG+CGG - chr3.2:72855822-72855841 None:intergenic 35.0%
AAGTGTGGAAGTTCTTGGTT+GGG - chr3.2:72855504-72855523 None:intergenic 40.0%
AGAGTAAGTGTGGAAGTTCT+TGG - chr3.2:72855509-72855528 None:intergenic 40.0%
CACCGTGCTAAGATATTCAA+TGG + chr3.2:72854998-72855017 MS.gene77556:CDS 40.0%
CCCAAGTTAGATCAAAGTCT+TGG - chr3.2:72854973-72854992 None:intergenic 40.0%
CGTGCTAAGATATTCAATGG+TGG + chr3.2:72855001-72855020 MS.gene77556:CDS 40.0%
CTTTCTCTAGACAAAACCTC+GGG + chr3.2:72855037-72855056 MS.gene77556:CDS 40.0%
GAGTTCTTGGGAAATGTTAG+CGG + chr3.2:72855400-72855419 MS.gene77556:CDS 40.0%
GGCATGAACAATATGCTGAT+TGG + chr3.2:72854899-72854918 MS.gene77556:CDS 40.0%
GTAAGCTGTAAATGGTGCTT+TGG - chr3.2:72855797-72855816 None:intergenic 40.0%
TAAGTGTGGAAGTTCTTGGT+TGG - chr3.2:72855505-72855524 None:intergenic 40.0%
TCCACACTTACTCTATCATC+TGG + chr3.2:72855515-72855534 MS.gene77556:CDS 40.0%
TCCAGATGATAGAGTAAGTG+TGG - chr3.2:72855519-72855538 None:intergenic 40.0%
TTGCGGTAGTAAGCTGTAAA+TGG - chr3.2:72855805-72855824 None:intergenic 40.0%
! AACGTGTTTTCTCAAGGCAA+AGG + chr3.2:72855445-72855464 MS.gene77556:CDS 40.0%
! ATTGGTTGGTTCTTTGGGAA+TGG - chr3.2:72855703-72855722 None:intergenic 40.0%
!! ATGCAACTCAAACTTGTTGC+TGG + chr3.2:72855106-72855125 MS.gene77556:CDS 40.0%
!! GTGGTTTGGTGAAAACTGAT+TGG + chr3.2:72855770-72855789 MS.gene77556:CDS 40.0%
!! TCTTTGGAACGCTGATGATT+GGG + chr3.2:72855738-72855757 MS.gene77556:CDS 40.0%
ACTCAGCAGGAATACCTTCT+GGG - chr3.2:72855981-72856000 None:intergenic 45.0%
AGCAGAACATGTAGCTACCA+AGG - chr3.2:72854942-72854961 None:intergenic 45.0%
ATGGTGCAGTTGTCATCACA+AGG + chr3.2:72855352-72855371 MS.gene77556:intron 45.0%
CTGCATTGCAGAATCAGAGA+AGG - chr3.2:72855866-72855885 None:intergenic 45.0%
CTTGTTGCTGGAAATTCTGC+TGG + chr3.2:72855118-72855137 MS.gene77556:CDS 45.0%
GATCTTAAGCGATTCCCAGA+AGG + chr3.2:72855964-72855983 MS.gene77556:CDS 45.0%
TCTTGGTTGGGTCAAACCAA+AGG - chr3.2:72855492-72855511 None:intergenic 45.0%
TGCAGAATCAGAGAAGGAAG+TGG - chr3.2:72855860-72855879 None:intergenic 45.0%
!! GTCTTTGGAACGCTGATGAT+TGG + chr3.2:72855737-72855756 MS.gene77556:CDS 45.0%
CACTCAGCAGGAATACCTTC+TGG - chr3.2:72855982-72856001 None:intergenic 50.0%
GAAGGAAGTGGAAGAGACAG+AGG - chr3.2:72855848-72855867 None:intergenic 50.0%
GATGATTGGGCTACAAGAGG+TGG + chr3.2:72855751-72855770 MS.gene77556:CDS 50.0%
GCTGATGATTGGGCTACAAG+AGG + chr3.2:72855748-72855767 MS.gene77556:CDS 50.0%
TTGGGCTACAAGAGGTGGTT+TGG + chr3.2:72855756-72855775 MS.gene77556:CDS 50.0%
CTAGACAAAACCTCGGGCTC+TGG + chr3.2:72855043-72855062 MS.gene77556:CDS 55.0%
CTGCTGAGTGCAAGCGTCCA+AGG + chr3.2:72855992-72856011 MS.gene77556:CDS 60.0%
CTTGGACGCTTGCACTCAGC+AGG - chr3.2:72855994-72856013 None:intergenic 60.0%
CGATTGGAAGCCAGAGCCCG+AGG - chr3.2:72855056-72855075 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr3.2 gene 72854884 72856020 72854884 ID=MS.gene77556
chr3.2 mRNA 72854884 72856020 72854884 ID=MS.gene77556.t1;Parent=MS.gene77556
chr3.2 exon 72854884 72855159 72854884 ID=MS.gene77556.t1.exon1;Parent=MS.gene77556.t1
chr3.2 CDS 72854884 72855159 72854884 ID=cds.MS.gene77556.t1;Parent=MS.gene77556.t1
chr3.2 exon 72855361 72855554 72855361 ID=MS.gene77556.t1.exon2;Parent=MS.gene77556.t1
chr3.2 CDS 72855361 72855554 72855361 ID=cds.MS.gene77556.t1;Parent=MS.gene77556.t1
chr3.2 exon 72855642 72856020 72855642 ID=MS.gene77556.t1.exon3;Parent=MS.gene77556.t1
chr3.2 CDS 72855642 72856020 72855642 ID=cds.MS.gene77556.t1;Parent=MS.gene77556.t1
Gene Sequence

>MS.gene77556

ATGGCTTCTTCTATTGGCATGAACAATATGCTGATTGGAGTTACGATAATTAGCTCCTTGGTAGCTACATGTTCTGCTAACTTCAACCAAGACTTTGATCTAACTTGGGGTGATCACCGTGCTAAGATATTCAATGGTGGTCAACTTCTATCTCTTTCTCTAGACAAAACCTCGGGCTCTGGCTTCCAATCGAAGAAAGAGTATTTATTTGGTAGAATTGATATGCAACTCAAACTTGTTGCTGGAAATTCTGCTGGAACTGTTACTGCTTATTACGTACGTTCTTCATTTTTTATTCCTTTCTTTACTTCCTCATATAGTATACCATATATTCTAATTCATTTCCAAAAGTAACTTTATTTAAAATAGTTTCTACACGATATCAAAAGCTTTTATGAGAATACTTGATTCTGTTTTTGTTTTGCTTCTTCTTTTGTATTGTGGTAAATAACGGTACTATATGCATATATGGTGCAGTTGTCATCACAAGGACCAACTCATGATGAAATAGATTTTGAGTTCTTGGGAAATGTTAGCGGTGATCCTTACATTCTTCATACAAACGTGTTTTCTCAAGGCAAAGGAAACAGAGAACAACAATTCTACCTTTGGTTTGACCCAACCAAGAACTTCCACACTTACTCTATCATCTGGAAGCCCCAACACATTATGTAAGTAATATATATTTAAGTTTGATCAAACAGCTCAATTAAGCGCTTATAAAAAAACCGCTAACAAGTTCGTATAACTAAATGCAGATTTTTAGTTGATAACATCCCTATAAGGATCTTCAAGAATGCTGAATCAATTGGTATTCCATTCCCAAAGAACCAACCAATGAGAATCTATTCAAGTCTTTGGAACGCTGATGATTGGGCTACAAGAGGTGGTTTGGTGAAAACTGATTGGTCCAAAGCACCATTTACAGCTTACTACCGCAATTTCAAAGCTACTGAGTTAACCTCTGTCTCTTCCACTTCCTTCTCTGATTCTGCAATGCAGAGCAATGAACTTGATGCTTATGGTAGAAGAAGATTGAGATGGGTTCAGAAGTACTTTATGATCTATAATTACTGCAACGATCTTAAGCGATTCCCAGAAGGTATTCCTGCTGAGTGCAAGCGTCCAAGGTTCTGA
Protein sequence

>MS.gene77556.t1

MASSIGMNNMLIGVTIISSLVATCSANFNQDFDLTWGDHRAKIFNGGQLLSLSLDKTSGSGFQSKKEYLFGRIDMQLKLVAGNSAGTVTAYYLSSQGPTHDEIDFEFLGNVSGDPYILHTNVFSQGKGNREQQFYLWFDPTKNFHTYSIIWKPQHIIFLVDNIPIRIFKNAESIGIPFPKNQPMRIYSSLWNADDWATRGGLVKTDWSKAPFTAYYRNFKATELTSVSSTSFSDSAMQSNELDAYGRRRLRWVQKYFMIYNYCNDLKRFPEGIPAECKRPRF