AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene77625

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene77625.t1 MTR_8g442400 55.486 319 126 5 1 304 15 332 1.15e-100 326
MS.gene77625.t1 MTR_0036s0010 98.684 76 1 0 1 76 1 76 6.80e-50 162
MS.gene77625.t1 MTR_1g090020 37.888 322 147 9 30 298 23 344 3.93e-48 175
MS.gene77625.t1 MTR_6g033130 42.248 258 112 6 78 298 84 341 7.27e-48 174
MS.gene77625.t1 MTR_6g033130 42.248 258 112 6 78 298 84 341 8.44e-48 174
MS.gene77625.t1 MTR_4g116520 53.957 139 58 3 146 280 147 283 2.73e-38 146
MS.gene77625.t1 MTR_2g461180 45.355 183 91 3 151 324 215 397 2.83e-38 146
MS.gene77625.t1 MTR_4g128650 50.350 143 69 2 139 281 16 156 2.40e-29 120
MS.gene77625.t1 MTR_4g091530 46.018 113 58 2 141 250 19 131 1.64e-27 112
MS.gene77625.t1 MTR_2g005700 39.007 141 74 3 151 280 13 152 2.54e-24 102
MS.gene77625.t1 MTR_6g082400 38.961 154 83 4 151 295 59 210 6.45e-24 103
MS.gene77625.t1 MTR_2g010160 43.519 108 59 2 145 250 38 145 2.08e-22 98.2
MS.gene77625.t1 MTR_4g105020 49.451 91 44 1 142 232 2 90 3.02e-22 92.8
MS.gene77625.t1 MTR_4g092850 41.284 109 60 2 145 250 33 140 1.85e-21 95.5
MS.gene77625.t1 MTR_5g032960 44.000 100 55 1 151 249 16 115 2.09e-21 91.7
MS.gene77625.t1 MTR_1g109470 40.351 114 63 2 142 250 46 159 6.61e-21 94.7
MS.gene77625.t1 MTR_8g106245 35.948 153 78 6 106 250 15 155 1.08e-18 87.8
MS.gene77625.t1 MTR_3g077030 43.902 82 46 0 151 232 9 90 1.16e-16 78.2
MS.gene77625.t1 MTR_5g067120 39.130 115 61 4 143 252 21 131 5.90e-16 79.0
MS.gene77625.t1 MTR_5g088620 34.259 108 64 4 151 252 4 110 2.41e-13 68.9
MS.gene77625.t1 MTR_5g488180 34.862 109 62 3 151 252 4 110 1.26e-11 63.9
MS.gene77625.t1 MTR_5g088090 34.862 109 62 3 151 252 4 110 1.26e-11 63.9
MS.gene77625.t1 MTR_5g088140 34.862 109 62 3 151 252 4 110 1.26e-11 63.9
MS.gene77625.t1 MTR_5g088120 33.945 109 63 3 151 252 4 110 2.66e-11 62.8
MS.gene77625.t1 MTR_5g488190 33.945 109 63 3 151 252 4 110 2.66e-11 62.8
MS.gene77625.t1 MTR_5g067160 32.800 125 76 3 151 267 43 167 5.70e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene77625.t1 AT1G79570 51.524 328 141 7 1 312 14 339 3.14e-91 295
MS.gene77625.t1 AT1G79570 51.524 328 141 7 1 312 14 339 2.38e-90 294
MS.gene77625.t1 AT1G79570 51.524 328 141 7 1 312 14 339 2.38e-90 294
MS.gene77625.t1 AT1G79570 51.524 328 141 7 1 312 14 339 4.29e-90 294
MS.gene77625.t1 AT1G79570 51.524 328 141 7 1 312 14 339 4.29e-90 294
MS.gene77625.t1 AT1G16270 52.703 296 114 7 32 312 43 327 4.95e-76 254
MS.gene77625.t1 AT1G16270 52.703 296 114 7 32 312 43 327 4.95e-76 254
MS.gene77625.t1 AT1G16270 52.703 296 114 7 32 312 43 327 4.95e-76 254
MS.gene77625.t1 AT2G35050 47.508 301 127 10 2 281 16 306 1.49e-64 222
MS.gene77625.t1 AT2G35050 47.508 301 127 10 2 281 16 306 1.49e-64 222
MS.gene77625.t1 AT3G24715 34.505 313 150 10 44 310 29 332 1.12e-37 144
MS.gene77625.t1 AT3G24715 34.505 313 150 10 44 310 29 332 1.12e-37 144
MS.gene77625.t1 AT3G24715 34.505 313 150 10 44 310 29 332 1.12e-37 144
MS.gene77625.t1 AT3G46920 54.815 135 56 3 151 280 75 209 1.36e-37 144
MS.gene77625.t1 AT3G46920 54.815 135 56 3 151 280 9 143 1.61e-37 144
MS.gene77625.t1 AT1G04700 37.891 256 116 8 45 280 30 262 1.61e-35 138
MS.gene77625.t1 AT1G04700 37.891 256 116 8 45 280 30 262 1.93e-35 137
MS.gene77625.t1 AT1G04700 37.891 256 116 8 45 280 30 262 1.93e-35 137
MS.gene77625.t1 AT5G57610 51.515 132 61 2 151 280 24 154 3.20e-33 131
MS.gene77625.t1 AT5G49920 46.715 137 67 3 145 280 4 135 1.65e-31 120
MS.gene77625.t1 AT3G26510 50.000 112 48 3 143 249 4 112 4.28e-25 101
MS.gene77625.t1 AT3G26510 50.000 112 48 3 143 249 4 112 4.28e-25 101
MS.gene77625.t1 AT3G26510 50.000 112 48 3 143 249 4 112 4.28e-25 101
MS.gene77625.t1 AT3G26510 50.000 112 48 3 143 249 4 112 4.28e-25 101
MS.gene77625.t1 AT3G26510 50.000 112 48 3 143 249 4 112 4.28e-25 101
MS.gene77625.t1 AT3G26510 50.000 112 48 3 143 249 4 112 4.28e-25 101
MS.gene77625.t1 AT4G05150 39.041 146 80 4 110 251 22 162 9.30e-25 105
MS.gene77625.t1 AT1G70640 54.023 87 39 1 147 232 4 90 1.04e-23 96.7
MS.gene77625.t1 AT3G48240 50.505 99 45 1 151 249 14 108 3.61e-22 92.8
MS.gene77625.t1 AT2G01190 45.283 106 53 2 151 251 75 180 1.31e-21 97.1
MS.gene77625.t1 AT5G64430 39.130 138 73 3 148 278 42 175 1.75e-21 95.9
MS.gene77625.t1 AT3G18230 34.132 167 105 2 151 312 64 230 2.32e-20 93.2
MS.gene77625.t1 AT5G09620 40.541 111 60 2 151 255 40 150 1.07e-19 90.5
MS.gene77625.t1 AT5G09620 40.179 112 59 3 151 255 40 150 1.49e-19 90.5
MS.gene77625.t1 AT5G63130 51.948 77 37 0 146 222 10 86 7.53e-19 84.0
MS.gene77625.t1 AT5G63130 51.948 77 37 0 146 222 10 86 7.53e-19 84.0
MS.gene77625.t1 AT1G25300 33.043 115 71 2 151 263 11 121 4.90e-17 80.5
MS.gene77625.t1 AT5G16220 33.571 140 84 5 151 283 31 168 1.02e-16 81.6

Find 85 sgRNAs with CRISPR-Local

Find 91 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCAGGCTGGTATTCATTTCT+AGG 0.200025 2.3:-29959923 None:intergenic
CAGTATGTTATTGCTGTTAA+TGG 0.224995 2.3:+29960730 MS.gene77625:CDS
ATCACACCACCGGAACTAAA+TGG 0.240896 2.3:-29960976 None:intergenic
TAATTATACAACTGGTTATA+TGG 0.254070 2.3:+29960132 MS.gene77625:CDS
ATATAACCAGTTGTATAATT+AGG 0.258175 2.3:-29960130 None:intergenic
TTGCTTCTATCAAACTCTTT+AGG 0.259662 2.3:-29960238 None:intergenic
TCTTTCTGTCAGAAAATATT+AGG 0.269496 2.3:+29960949 MS.gene77625:CDS
TCCTGATGCAGCGAAGTTCT+TGG 0.283088 2.3:-29960283 None:intergenic
AAGATATGTCCTTTCTTATA+CGG 0.296886 2.3:-29960456 None:intergenic
TGCAAATGATATAAATGAAT+TGG 0.298515 2.3:+29960804 MS.gene77625:CDS
GTTCTCAATCAGTGATTTGC+AGG 0.317590 2.3:+29960663 MS.gene77625:CDS
ATGAGAGACAGGGCAAATAT+TGG 0.353843 2.3:+29960079 MS.gene77625:CDS
AGACAGTTTGTGCATGGATA+TGG 0.356567 2.3:+29960310 MS.gene77625:CDS
TTATACGGAGAATGCGTGTT+TGG 0.381207 2.3:-29960441 None:intergenic
ACAATTAAGTACCAGCTTCC+CGG 0.382280 2.3:+29960526 MS.gene77625:CDS
TGAGAGACAGGGCAAATATT+GGG 0.389082 2.3:+29960080 MS.gene77625:CDS
ATGAAGTTTCTTTGTAGCTT+CGG 0.397325 2.3:+29960367 MS.gene77625:CDS
TGCATTATTGACTGTGATCC+AGG 0.400408 2.3:-29959941 None:intergenic
CTCTTGAGTTTATGAGAGAC+AGG 0.408175 2.3:+29960068 MS.gene77625:CDS
TCCAAGAACTTCGCTGCATC+AGG 0.410677 2.3:+29960282 MS.gene77625:CDS
GGTGTATAAATCAGTACAAT+CGG 0.413109 2.3:+29960842 MS.gene77625:CDS
TGATGAGTTATCATAACTTT+CGG 0.413222 2.3:-29960338 None:intergenic
TTAGGCAACCCATTTAGTTC+CGG 0.419445 2.3:+29960967 MS.gene77625:CDS
AGTAATGGAGGATCTGAAAC+TGG 0.423190 2.3:+29960178 MS.gene77625:CDS
GATTTGCAGGATGCTCAGTT+TGG 0.423232 2.3:+29960676 MS.gene77625:CDS
TGCTGTTAATGGCATGGACT+TGG 0.425364 2.3:+29960741 MS.gene77625:CDS
CAATTAAGTACCAGCTTCCC+GGG 0.442674 2.3:+29960527 MS.gene77625:CDS
AGTGATCCTAATTATACAAC+TGG 0.444251 2.3:+29960124 MS.gene77625:CDS
CGGGGAAGATCTTGATGCCT+TGG 0.444463 2.3:+29960546 MS.gene77625:CDS
GTACAATCGGGGAGTAGAAA+TGG 0.450505 2.3:+29960855 MS.gene77625:CDS
CATGTCTATGCCGTCAATGA+TGG 0.456219 2.3:+29960207 MS.gene77625:CDS
TCAGTTTGGTCTCACGTCCA+TGG 0.456435 2.3:+29960690 MS.gene77625:CDS
TACCTTAGCTTTCCATCACT+TGG 0.469395 2.3:-29960409 None:intergenic
TCACACCACCGGAACTAAAT+GGG 0.472555 2.3:-29960975 None:intergenic
CAAGATCTTCCCCGGGAAGC+TGG 0.477699 2.3:-29960537 None:intergenic
GATGGAAAGCTAAGGTATGT+TGG 0.479309 2.3:+29960415 MS.gene77625:CDS
TGTATCAAATAATGCTGTAC+AGG 0.481504 2.3:-29960028 None:intergenic
GAGAAGGATCACAAAAGCTT+AGG 0.485352 2.3:+29960632 MS.gene77625:CDS
GTTTAACTTCCGATGTATTG+AGG 0.496791 2.3:-29960006 None:intergenic
TAGAAATGGCTGTGGAATTG+AGG 0.505903 2.3:+29960869 MS.gene77625:CDS
GTGTATAAATCAGTACAATC+GGG 0.510389 2.3:+29960843 MS.gene77625:CDS
CATTAACAGCAATAACATAC+TGG 0.512418 2.3:-29960729 None:intergenic
CAGTTTGGTCTCACGTCCAT+GGG 0.516382 2.3:+29960691 MS.gene77625:CDS
GAGTCTCAAGTCATTGAAGC+TGG 0.518318 2.3:+29960891 MS.gene77625:CDS
CAAGGCATCAAGATCTTCCC+CGG 0.523488 2.3:-29960545 None:intergenic
ATTTAGTTCCGGTGGTGTGA+TGG 0.528827 2.3:+29960978 MS.gene77625:CDS
GGATATTTATCCATCATTGA+CGG 0.534174 2.3:-29960217 None:intergenic
CCTAGAAATGAATACCAGCC+TGG 0.535022 2.3:+29959923 MS.gene77625:CDS
AAATGATATAAATGAATTGG+AGG 0.535088 2.3:+29960807 MS.gene77625:CDS
AATGATATAAATGAATTGGA+GGG 0.553986 2.3:+29960808 MS.gene77625:CDS
CAGCATTATTTGATACAGAC+GGG 0.556155 2.3:+29960034 MS.gene77625:CDS
CTCAACTGCCATCACACCAC+CGG 0.556720 2.3:-29960986 None:intergenic
ATATTGCCACGGCCAAGTGA+TGG 0.557947 2.3:+29960397 MS.gene77625:CDS
ACAGCATTATTTGATACAGA+CGG 0.561948 2.3:+29960033 MS.gene77625:CDS
GACAATAGACAGTTTGTGCA+TGG 0.562402 2.3:+29960304 MS.gene77625:CDS
ACGCATTCTCCGTATAAGAA+AGG 0.563451 2.3:+29960447 MS.gene77625:CDS
TTATTTGATACAGACGGGTG+AGG 0.567880 2.3:+29960039 MS.gene77625:CDS
CGAGGATATACAGAACATGA+TGG 0.569777 2.3:+29960585 MS.gene77625:CDS
GTCAATAATGCATGACCACA+TGG 0.572642 2.3:+29959952 MS.gene77625:CDS
TCACTGACATTCGAAAATAC+AGG 0.575002 2.3:-29960106 None:intergenic
AGCTTTCCATCACTTGGCCG+TGG 0.576472 2.3:-29960403 None:intergenic
GGCAACCCATTTAGTTCCGG+TGG 0.576497 2.3:+29960970 MS.gene77625:CDS
GACTTCAGAATCATCGCCCA+TGG 0.577887 2.3:-29960707 None:intergenic
TGTTATTGCTGTTAATGGCA+TGG 0.586180 2.3:+29960735 MS.gene77625:CDS
TGATATAAATGAATTGGAGG+GGG 0.590845 2.3:+29960810 MS.gene77625:CDS
TCGGGGAGTAGAAATGGCTG+TGG 0.605719 2.3:+29960861 MS.gene77625:CDS
ATAATGCATGACCACATGGA+TGG 0.606199 2.3:+29959956 MS.gene77625:CDS
ATGATATAAATGAATTGGAG+GGG 0.607759 2.3:+29960809 MS.gene77625:CDS
TTATTGACTGTGATCCAGGC+TGG 0.620943 2.3:-29959937 None:intergenic
TCCGATGTATTGAGGTCATG+TGG 0.628153 2.3:-29959998 None:intergenic
GGAAAGCTAAGGTATGTTGG+AGG 0.631215 2.3:+29960418 MS.gene77625:CDS
ACTGGTTATATGGAACTGAA+AGG 0.631603 2.3:+29960142 MS.gene77625:CDS
GGCCAAGTGATGGAAAGCTA+AGG 0.638781 2.3:+29960407 MS.gene77625:CDS
AAGTTTCTTTGTAGCTTCGG+CGG 0.643153 2.3:+29960370 MS.gene77625:CDS
AAGGCATCAAGATCTTCCCC+GGG 0.650794 2.3:-29960544 None:intergenic
GTCAGATGATACAGATACCA+AGG 0.657270 2.3:-29960563 None:intergenic
ACCACATGACCTCAATACAT+CGG 0.661871 2.3:+29959997 MS.gene77625:CDS
AATCATCTAGAAGATAGAGA+AGG 0.670856 2.3:+29960616 MS.gene77625:CDS
TCTTGAGTTTATGAGAGACA+GGG 0.674716 2.3:+29960069 MS.gene77625:CDS
TCATATAAATTCCATCCATG+TGG 0.684508 2.3:-29959967 None:intergenic
TGTATAAATCAGTACAATCG+GGG 0.687901 2.3:+29960844 MS.gene77625:CDS
GAGTTTGATAGAAGCAACTG+CGG 0.707625 2.3:+29960244 MS.gene77625:CDS
TCGGCGGTAGAATATTGCCA+CGG 0.717552 2.3:+29960386 MS.gene77625:CDS
GGTATCTGTATCATCTGACG+AGG 0.721389 2.3:+29960567 MS.gene77625:CDS
AATTAAGTACCAGCTTCCCG+GGG 0.728477 2.3:+29960528 MS.gene77625:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATGATATAAATGAATTGG+AGG + chr2.3:29960807-29960826 MS.gene77625:CDS 20.0%
!! AATGATATAAATGAATTGGA+GGG + chr2.3:29960808-29960827 MS.gene77625:CDS 20.0%
!! ATATAACCAGTTGTATAATT+AGG - chr2.3:29960133-29960152 None:intergenic 20.0%
!! TAATTATACAACTGGTTATA+TGG + chr2.3:29960132-29960151 MS.gene77625:CDS 20.0%
!! TGCAAATGATATAAATGAAT+TGG + chr2.3:29960804-29960823 MS.gene77625:CDS 20.0%
! AAGATATGTCCTTTCTTATA+CGG - chr2.3:29960459-29960478 None:intergenic 25.0%
! AGAAAAAACTCAAATATGGT+TGG + chr2.3:29960769-29960788 MS.gene77625:CDS 25.0%
! ATGATATAAATGAATTGGAG+GGG + chr2.3:29960809-29960828 MS.gene77625:CDS 25.0%
! TCTTTCTGTCAGAAAATATT+AGG + chr2.3:29960949-29960968 MS.gene77625:CDS 25.0%
! TGATGAGTTATCATAACTTT+CGG - chr2.3:29960341-29960360 None:intergenic 25.0%
AATCATCTAGAAGATAGAGA+AGG + chr2.3:29960616-29960635 MS.gene77625:CDS 30.0%
ACAGCATTATTTGATACAGA+CGG + chr2.3:29960033-29960052 MS.gene77625:CDS 30.0%
AGTGATCCTAATTATACAAC+TGG + chr2.3:29960124-29960143 MS.gene77625:CDS 30.0%
ATGAAGTTTCTTTGTAGCTT+CGG + chr2.3:29960367-29960386 MS.gene77625:CDS 30.0%
CATTAACAGCAATAACATAC+TGG - chr2.3:29960732-29960751 None:intergenic 30.0%
GGATATTTATCCATCATTGA+CGG - chr2.3:29960220-29960239 None:intergenic 30.0%
GGTGTATAAATCAGTACAAT+CGG + chr2.3:29960842-29960861 MS.gene77625:CDS 30.0%
GTCGAGAAAAAACTCAAATA+TGG + chr2.3:29960765-29960784 MS.gene77625:CDS 30.0%
GTGTATAAATCAGTACAATC+GGG + chr2.3:29960843-29960862 MS.gene77625:CDS 30.0%
TCATATAAATTCCATCCATG+TGG - chr2.3:29959970-29959989 None:intergenic 30.0%
TGATATAAATGAATTGGAGG+GGG + chr2.3:29960810-29960829 MS.gene77625:CDS 30.0%
TGTATAAATCAGTACAATCG+GGG + chr2.3:29960844-29960863 MS.gene77625:CDS 30.0%
TGTATCAAATAATGCTGTAC+AGG - chr2.3:29960031-29960050 None:intergenic 30.0%
TTGCTTCTATCAAACTCTTT+AGG - chr2.3:29960241-29960260 None:intergenic 30.0%
! CAGTATGTTATTGCTGTTAA+TGG + chr2.3:29960730-29960749 MS.gene77625:CDS 30.0%
!! ATTTTAGGAATCAGTAATGG+AGG + chr2.3:29960166-29960185 MS.gene77625:CDS 30.0%
ACTGGTTATATGGAACTGAA+AGG + chr2.3:29960142-29960161 MS.gene77625:CDS 35.0%
CAGCATTATTTGATACAGAC+GGG + chr2.3:29960034-29960053 MS.gene77625:CDS 35.0%
TCACTGACATTCGAAAATAC+AGG - chr2.3:29960109-29960128 None:intergenic 35.0%
TCTTGAGTTTATGAGAGACA+GGG + chr2.3:29960069-29960088 MS.gene77625:CDS 35.0%
! GTTTAACTTCCGATGTATTG+AGG - chr2.3:29960009-29960028 None:intergenic 35.0%
! TGTTATTGCTGTTAATGGCA+TGG + chr2.3:29960735-29960754 MS.gene77625:CDS 35.0%
!! GGCATTTTAGGAATCAGTAA+TGG + chr2.3:29960163-29960182 MS.gene77625:CDS 35.0%
!!! ATGGAACTGAAAGGCATTTT+AGG + chr2.3:29960151-29960170 MS.gene77625:CDS 35.0%
AAGTTTCTTTGTAGCTTCGG+CGG + chr2.3:29960370-29960389 MS.gene77625:CDS 40.0%
ACAATTAAGTACCAGCTTCC+CGG + chr2.3:29960526-29960545 MS.gene77625:CDS 40.0%
ACCACATGACCTCAATACAT+CGG + chr2.3:29959997-29960016 MS.gene77625:CDS 40.0%
ACGCATTCTCCGTATAAGAA+AGG + chr2.3:29960447-29960466 MS.gene77625:CDS 40.0%
AGACAGTTTGTGCATGGATA+TGG + chr2.3:29960310-29960329 MS.gene77625:CDS 40.0%
ATAATGCATGACCACATGGA+TGG + chr2.3:29959956-29959975 MS.gene77625:CDS 40.0%
ATGAGAGACAGGGCAAATAT+TGG + chr2.3:29960079-29960098 MS.gene77625:CDS 40.0%
CGAGGATATACAGAACATGA+TGG + chr2.3:29960585-29960604 MS.gene77625:CDS 40.0%
CTCTTGAGTTTATGAGAGAC+AGG + chr2.3:29960068-29960087 MS.gene77625:CDS 40.0%
GACAATAGACAGTTTGTGCA+TGG + chr2.3:29960304-29960323 MS.gene77625:CDS 40.0%
GAGAAGGATCACAAAAGCTT+AGG + chr2.3:29960632-29960651 MS.gene77625:CDS 40.0%
GAGTTTGATAGAAGCAACTG+CGG + chr2.3:29960244-29960263 MS.gene77625:CDS 40.0%
GATGGAAAGCTAAGGTATGT+TGG + chr2.3:29960415-29960434 MS.gene77625:CDS 40.0%
GTCAATAATGCATGACCACA+TGG + chr2.3:29959952-29959971 MS.gene77625:CDS 40.0%
GTCAGATGATACAGATACCA+AGG - chr2.3:29960566-29960585 None:intergenic 40.0%
TAGAAATGGCTGTGGAATTG+AGG + chr2.3:29960869-29960888 MS.gene77625:CDS 40.0%
TGAGAGACAGGGCAAATATT+GGG + chr2.3:29960080-29960099 MS.gene77625:CDS 40.0%
TTATACGGAGAATGCGTGTT+TGG - chr2.3:29960444-29960463 None:intergenic 40.0%
TTATTTGATACAGACGGGTG+AGG + chr2.3:29960039-29960058 MS.gene77625:CDS 40.0%
! AGTAATGGAGGATCTGAAAC+TGG + chr2.3:29960178-29960197 MS.gene77625:CDS 40.0%
! GTTCTCAATCAGTGATTTGC+AGG + chr2.3:29960663-29960682 MS.gene77625:CDS 40.0%
! TACCTTAGCTTTCCATCACT+TGG - chr2.3:29960412-29960431 None:intergenic 40.0%
! TGCATTATTGACTGTGATCC+AGG - chr2.3:29959944-29959963 None:intergenic 40.0%
! TTAGGCAACCCATTTAGTTC+CGG + chr2.3:29960967-29960986 MS.gene77625:CDS 40.0%
AATTAAGTACCAGCTTCCCG+GGG + chr2.3:29960528-29960547 MS.gene77625:CDS 45.0%
AATTGGAGGGGGATCATTCT+TGG + chr2.3:29960821-29960840 MS.gene77625:CDS 45.0%
ATCACACCACCGGAACTAAA+TGG - chr2.3:29960979-29960998 None:intergenic 45.0%
CAATTAAGTACCAGCTTCCC+GGG + chr2.3:29960527-29960546 MS.gene77625:CDS 45.0%
CATGTCTATGCCGTCAATGA+TGG + chr2.3:29960207-29960226 MS.gene77625:CDS 45.0%
CCAGGCTGGTATTCATTTCT+AGG - chr2.3:29959926-29959945 None:intergenic 45.0%
CCTAGAAATGAATACCAGCC+TGG + chr2.3:29959923-29959942 MS.gene77625:CDS 45.0%
GAGTCTCAAGTCATTGAAGC+TGG + chr2.3:29960891-29960910 MS.gene77625:CDS 45.0%
GATTTGCAGGATGCTCAGTT+TGG + chr2.3:29960676-29960695 MS.gene77625:CDS 45.0%
GGAAAGCTAAGGTATGTTGG+AGG + chr2.3:29960418-29960437 MS.gene77625:CDS 45.0%
GGTATCTGTATCATCTGACG+AGG + chr2.3:29960567-29960586 MS.gene77625:CDS 45.0%
GTACAATCGGGGAGTAGAAA+TGG + chr2.3:29960855-29960874 MS.gene77625:CDS 45.0%
TCACACCACCGGAACTAAAT+GGG - chr2.3:29960978-29960997 None:intergenic 45.0%
TCCGATGTATTGAGGTCATG+TGG - chr2.3:29960001-29960020 None:intergenic 45.0%
TGCTGTTAATGGCATGGACT+TGG + chr2.3:29960741-29960760 MS.gene77625:CDS 45.0%
! ATTTAGTTCCGGTGGTGTGA+TGG + chr2.3:29960978-29960997 MS.gene77625:CDS 45.0%
! TTATTGACTGTGATCCAGGC+TGG - chr2.3:29959940-29959959 None:intergenic 45.0%
ATATTGCCACGGCCAAGTGA+TGG + chr2.3:29960397-29960416 MS.gene77625:CDS 50.0%
CAGTTTGGTCTCACGTCCAT+GGG + chr2.3:29960691-29960710 MS.gene77625:CDS 50.0%
GACTTCAGAATCATCGCCCA+TGG - chr2.3:29960710-29960729 None:intergenic 50.0%
TCAGTTTGGTCTCACGTCCA+TGG + chr2.3:29960690-29960709 MS.gene77625:CDS 50.0%
TCCAAGAACTTCGCTGCATC+AGG + chr2.3:29960282-29960301 MS.gene77625:CDS 50.0%
TCCTGATGCAGCGAAGTTCT+TGG - chr2.3:29960286-29960305 None:intergenic 50.0%
TCGGCGGTAGAATATTGCCA+CGG + chr2.3:29960386-29960405 MS.gene77625:CDS 50.0%
! AAGGCATCAAGATCTTCCCC+GGG - chr2.3:29960547-29960566 None:intergenic 50.0%
! CAAGGCATCAAGATCTTCCC+CGG - chr2.3:29960548-29960567 None:intergenic 50.0%
! GGCCAAGTGATGGAAAGCTA+AGG + chr2.3:29960407-29960426 MS.gene77625:CDS 50.0%
AGCTTTCCATCACTTGGCCG+TGG - chr2.3:29960406-29960425 None:intergenic 55.0%
CGGGGAAGATCTTGATGCCT+TGG + chr2.3:29960546-29960565 MS.gene77625:CDS 55.0%
CTCAACTGCCATCACACCAC+CGG - chr2.3:29960989-29961008 None:intergenic 55.0%
TCGGGGAGTAGAAATGGCTG+TGG + chr2.3:29960861-29960880 MS.gene77625:CDS 55.0%
! GGCAACCCATTTAGTTCCGG+TGG + chr2.3:29960970-29960989 MS.gene77625:CDS 55.0%
CAAGATCTTCCCCGGGAAGC+TGG - chr2.3:29960540-29960559 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr2.3 gene 29959917 29961011 29959917 ID=MS.gene77625
chr2.3 mRNA 29959917 29961011 29959917 ID=MS.gene77625.t1;Parent=MS.gene77625
chr2.3 exon 29959917 29961011 29959917 ID=MS.gene77625.t1.exon1;Parent=MS.gene77625.t1
chr2.3 CDS 29959917 29961011 29959917 ID=cds.MS.gene77625.t1;Parent=MS.gene77625.t1
Gene Sequence

>MS.gene77625

ATGGATCCTAGAAATGAATACCAGCCTGGATCACAGTCAATAATGCATGACCACATGGATGGAATTTATATGAGTAGAAGACCACATGACCTCAATACATCGGAAGTTAAACCTGTACAGCATTATTTGATACAGACGGGTGAGGAATTCTCTCTTGAGTTTATGAGAGACAGGGCAAATATTGGGAAGCCTGTATTTTCGAATGTCAGTGATCCTAATTATACAACTGGTTATATGGAACTGAAAGGCATTTTAGGAATCAGTAATGGAGGATCTGAAACTGGATCAGACATGTCTATGCCGTCAATGATGGATAAATATCCTAAAGAGTTTGATAGAAGCAACTGCGGATCGATTCGATCAATTCCAAGAACTTCGCTGCATCAGGACAATAGACAGTTTGTGCATGGATATGGCTCTTCCGAAAGTTATGATAACTCATCAATTATGATGAAGTTTCTTTGTAGCTTCGGCGGTAGAATATTGCCACGGCCAAGTGATGGAAAGCTAAGGTATGTTGGAGGCCAAACACGCATTCTCCGTATAAGAAAGGACATATCTTATCACGAGCTTATTCAAAAAGCGTTGATGATCTATAATCAAGTTCAGACAATTAAGTACCAGCTTCCCGGGGAAGATCTTGATGCCTTGGTATCTGTATCATCTGACGAGGATATACAGAACATGATGGAAGAATGTAATCATCTAGAAGATAGAGAAGGATCACAAAAGCTTAGGATGTTTTTGTTCTCAATCAGTGATTTGCAGGATGCTCAGTTTGGTCTCACGTCCATGGGCGATGATTCTGAAGTCCAGTATGTTATTGCTGTTAATGGCATGGACTTGGAGTCGAGAAAAAACTCAAATATGGTTGGTTTGAGCTTTTCTGCAAATGATATAAATGAATTGGAGGGGGATCATTCTTGGTGTATAAATCAGTACAATCGGGGAGTAGAAATGGCTGTGGAATTGAGGAGTCTCAAGTCATTGAAGCTGGAAATCAAGAGTAGAAATGTAGATAGCATGTTCTTCTCTTTCTGTCAGAAAATATTAGGCAACCCATTTAGTTCCGGTGGTGTGATGGCAGTTGAGTAA
Protein sequence

>MS.gene77625.t1

MDPRNEYQPGSQSIMHDHMDGIYMSRRPHDLNTSEVKPVQHYLIQTGEEFSLEFMRDRANIGKPVFSNVSDPNYTTGYMELKGILGISNGGSETGSDMSMPSMMDKYPKEFDRSNCGSIRSIPRTSLHQDNRQFVHGYGSSESYDNSSIMMKFLCSFGGRILPRPSDGKLRYVGGQTRILRIRKDISYHELIQKALMIYNQVQTIKYQLPGEDLDALVSVSSDEDIQNMMEECNHLEDREGSQKLRMFLFSISDLQDAQFGLTSMGDDSEVQYVIAVNGMDLESRKNSNMVGLSFSANDINELEGDHSWCINQYNRGVEMAVELRSLKSLKLEIKSRNVDSMFFSFCQKILGNPFSSGGVMAVE