AlfalfaGEDB | MS.gene77994

M. sativa cultivar XinJiangDaYe / MS.gene77994

KEGG: -
GO: GO:0000166 GO:0003674 GO:0005488 GO:0017076 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0036094 GO:0043167 GO:0043168 GO:0043531 GO:0097159 GO:0097367 GO:1901265 GO:1901363
PFAM: PF00931.25 PF12799.10 PF13855.9 PF18052.4

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene77994.t1	XP_003598861.1	78.3	1312	224	8	1	1297	1	1266	0.00E+00	1807.3

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene77994.t1	Q9LRR4	35.6	921	525	17	1	882	4	895	9.3e-144	513.1

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene77994.t1	G7J1J8	78.3	1312	224	8	1	1297	1	1266	0.0e+00	1807.3

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049590	MS.gene77994	0.816726	4.77E-52	-1.69E-46
MS.gene051147	MS.gene77994	0.809922	1.49E-50	-1.69E-46
MS.gene05132	MS.gene77994	0.809435	1.90E-50	-1.69E-46
MS.gene051800	MS.gene77994	0.815511	8.90E-52	-1.69E-46
MS.gene053147	MS.gene77994	0.802157	6.41E-49	-1.69E-46
MS.gene053621	MS.gene77994	0.80613	9.55E-50	-1.69E-46
MS.gene054467	MS.gene77994	0.807171	5.76E-50	-1.69E-46
MS.gene060167	MS.gene77994	0.809582	1.76E-50	-1.69E-46
MS.gene06052	MS.gene77994	0.809751	1.62E-50	-1.69E-46

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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene77994.t1	MTR_0425s0020	79.863	1311	195	7	1	1297	1	1256	0.0	2008
MS.gene77994.t1	MTR_3g022600	80.000	1315	196	9	1	1297	1	1266	0.0	1996
MS.gene77994.t1	MTR_3g022300	75.896	1311	214	8	1	1297	1	1223	0.0	1861
MS.gene77994.t1	MTR_3g022230	65.620	1338	337	22	1	1265	1	1288	0.0	1516
MS.gene77994.t1	MTR_3g022230	70.254	511	139	4	786	1292	1096	1597	0.0	633
MS.gene77994.t1	MTR_3g027200	66.497	1182	329	22	1	1166	1	1131	0.0	1396
MS.gene77994.t1	MTR_3g027200	58.871	372	136	6	930	1289	788	1154	6.69e-106	363
MS.gene77994.t1	MTR_3g023030	71.429	1057	261	14	1	1037	1	1036	0.0	1354
MS.gene77994.t1	MTR_3g023030	66.313	377	115	4	930	1294	783	1159	8.74e-140	456
MS.gene77994.t1	MTR_3g023030	68.969	1057	253	14	1	1037	1	1002	0.0	1292

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene77994.t1	AT3G14470	36.922	1059	577	22	1	1016	4	1014	0.0	610
MS.gene77994.t1	AT3G14470	36.922	1059	577	22	1	1016	4	1014	0.0	610
MS.gene77994.t1	AT3G14460	35.480	916	550	17	5	896	1	899	1.67e-160	518
MS.gene77994.t1	AT3G14460	27.990	393	208	15	910	1292	1092	1419	1.45e-20	99.4
MS.gene77994.t1	AT3G50950	28.101	911	543	34	1	879	1	831	4.72e-70	253
MS.gene77994.t1	AT3G50950	28.101	911	543	34	1	879	1	831	4.72e-70	253
MS.gene77994.t1	AT1G58602	27.101	1059	664	34	18	1023	10	1013	7.02e-70	257
MS.gene77994.t1	AT1G58602	27.101	1059	664	34	18	1023	10	1013	7.02e-70	257
MS.gene77994.t1	AT1G58848	28.149	1048	646	40	33	1027	25	1018	3.58e-68	251
MS.gene77994.t1	AT1G59218	28.149	1048	646	40	33	1027	25	1018	3.58e-68	251

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Find 255 sgRNAs with CRISPR-Local

Find 314 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACAAATATGTGAAGAAT+TGG	0.356770	3.4:+14036628	MS.gene77994:CDS
AAAACTGATTGGTTCGAGAG+AGG	0.627248	3.4:+14039941	MS.gene77994:CDS
AAAACTTCAAGGGACTTGAA+TGG	0.465980	3.4:-14038961	None:intergenic
AAAATACAGAGTACGAAGAC+TGG	0.562525	3.4:-14039838	None:intergenic
AAAATAGTGGAAAAGTGTGG+AGG	0.644507	3.4:+14037533	MS.gene77994:CDS
AAACCGACTATGCTGATTAT+TGG	0.261123	3.4:-14037035	None:intergenic
AAACGTGGAGTCCTTCCCAG+AGG	0.770799	3.4:+14040022	MS.gene77994:CDS
AAAGAAGATGCCAAAGCATA+TGG	0.384530	3.4:+14038444	MS.gene77994:CDS
AAAGAGTTGAGATTGGGAGA+AGG	0.588957	3.4:+14036855	MS.gene77994:CDS
AAATAGTGGAAAAGTGTGGA+GGG	0.622973	3.4:+14037534	MS.gene77994:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATGACTTGAGAATTGCTT+TGG	-	chr3.4:14037180-14037199	None:intergenic	30.0%
AAGGTAGTAGATTTCCAAAT+TGG	+	chr3.4:14038764-14038783	MS.gene77994:CDS	30.0%
AATTGGAGAAAAACGATTGT+TGG	+	chr3.4:14037438-14037457	MS.gene77994:CDS	30.0%
ACAATTTCAGAGAATTGAGT+TGG	-	chr3.4:14039980-14039999	None:intergenic	30.0%
ACGAGTTTGGAAAAATTTGA+AGG	-	chr3.4:14038373-14038392	None:intergenic	30.0%
AGTACAAGATACACTAAGTT+GGG	-	chr3.4:14038808-14038827	None:intergenic	30.0%
ATAGAAAGCTCTTTAAGCAA+AGG	-	chr3.4:14039036-14039055	None:intergenic	30.0%
ATATGGTAGAGATGATGATA+AGG	+	chr3.4:14036962-14036981	MS.gene77994:CDS	30.0%
ATGGAAAGTTTCTTAAGAGA+AGG	-	chr3.4:14038877-14038896	None:intergenic	30.0%
CAAAAGAAAGAGTTGAGATT+GGG	+	chr3.4:14036849-14036868	MS.gene77994:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3.4	gene	14036444	14040337	14036444	ID=MS.gene77994
chr3.4	mRNA	14036444	14040337	14036444	ID=MS.gene77994.t1;Parent=MS.gene77994
chr3.4	exon	14036444	14040337	14036444	ID=MS.gene77994.t1.exon1;Parent=MS.gene77994.t1
chr3.4	CDS	14036444	14040337	14036444	ID=cds.MS.gene77994.t1;Parent=MS.gene77994.t1

Gene Sequence

>MS.gene77994

ATGGCAGAATTGGTAGCTGGGGCATTTCTTCAGTCTTCCTTTCAAGTGATTATTGAGAAGTTGACTTCCGTTGATATCAGAGACTACTTCGGTCGTAATAATGTTGACAACCTTGTGAAAGAACTTAATATTGCACTCAATTCTATCAACCTGGTACTGGACGAAGCAGAGATAAAGCAGTACCAAAACAAATATGTGAAGAATTGGCTTGATGAACTCAAATATGTTGTTTATGAAGCAGACCAACTCTTAGATGAGATTTCTACTGATGCAATGCTAAATAAGCTGAAAGCTGAATCTGAACCACTTACCACCAATTTATTGGGCTTGGTTTCAGCTTTAACTACAAATCCATTTGAATCTAGGCTCAATGAACAACTGGATAAACTAGAACTTCTTGCAAAGCAAAAGAAAGAGTTGAGATTGGGAGAAGGTCCTAGTGCTAGTAATGAAGGCTTAGTCAGTTGGAAACCTTCAAAAAGATTATCATCTACCGCTCTGGTGGATGAGTCAAGCATATATGGTAGAGATGATGATAAGGAAAAACTGATCAAGTTTTTACTTGCAGGCAATGGCAGTGGCAACCAGGTTCCAATAATCAGCATAGTCGGTTTAGGAGGGATGGGGAAAACCACCCTTGCTAAGCTTGTGTACAATGACAACAAGATAGAGAAGCATTTTGAGCTTAAAGCATGGGTCTATGTTTCTGAATCTTTTGATGTTGTTGGACTCACCAAAGCAATTCTCAAGTCATTTAATCCTTCAGCCAATGGTGAAGACTTGAACCTACTCCAACATCAACTCCAACACATGCTAATGGGAAAGAAATACTTGCTTGTTTTAGATGATATCTGGAATGGGAAAACGGAATGTTGGGAGCAGTTACTACTTCCGTTTAACCATGGATCTTCTGGAAGTAAGATTATCGTGACAACACGTGAAAAGGAGGTAGCAGATCATGTCCTAAACTCCACAAAATTATTTGATTTAGAGCAATTGGAGAAAAACGATTGTTGGAGTTTATTTGTGAAACATGCTTTTCATGGCAAGAATGTGTGTGAACATCAAGATCTTGAATCAATTGGCAGGAAAATAGTGGAAAAGTGTGGAGGGTTGCCTTTAGCTATAAAATCATTGGGCCAACTTTTGCGTAAAAAATTTTCTGAACATGAATGGATTAAGATATTGGAGACTGACATGTGGCGTTTATCAGACGGGGACCACAACATTAACTCAGTACTAAGATTGAGTTACCATAATCTCCCTTCAGATCCAAAGCGTTGCATTGCCTATTGTTCCATTTTTCCCAAGGGTTATAGATTTGAAAAAGAAGTATTGATCAAGCTTTGGATGGCAGAAGGTTTGCTGAAGTGTTGCGGATCAGACAAAAGTGAAGAAGAGTTTGGTAATGAAATTTTTTGTGATCTTGAGTCTATTTCATTTTTCCAACAATCATTTGATCCTTATCACACATATGAGTACTATGTCATGCATGATCTTGTCAATGATTTAACAAAATCAGTGTCAGATGAATTTTGTATTCAAATAGAGGATGTTAAGGTGGAACGTGGCCTTGAAAGGACACGTCATATTTGGTGCTCTCTTCAATCAAATTGTGTTGATCATAAATCACTAGAACCAATTTGTGAGCTTACAGGACTACGTAGTCTGATACTACGAGGCTGCTGGGGTGTGTCAATAAGCAAAAATGTGCAACGTGATCTGTTTTTAGGACTTAAATATTTACGGATGTTAAAACTTATACGTTGTGGTCTCTCAGAGCTAGCTGATGAAATAAGCAGTCTAAAACTTCTGCGTTATCTAGACCTTTCATACACGGAGATTACAAGCTTACCTGATACCATTTGTATGTTGTATAATTTGCAAACACTCTTGTTAAAAGGCTGTCATCAATTGACTGAGCTCCCTTCAAATTTTTCCAAACTCGTCAGTTTACATCATCTTGAACTCCCTTATGATTATTTTGAAGGCTGTTGTATAAAGAAGATGCCAAAGCATATGGGAAAGCTAAACAATCTTCAGACCCTGTCATATTTTATTGTGGAAGAGCATAACGAATCTGATCTCAAAGAGTTATCAGAACTAAACCATCTTCATGGAACAATTCATATTAAAGGGTTGGGTAATGTCAGTGATCCTGCAGATGCTGCCACATCAAATTTGAAAGATAAGAAATATTTAGAAGAATTACAAATGGAGTTCAATGGCGGAAGAGAAGAAATGGATGAAAGAAGTGTGTTAGTCTTGGAGGCTCTACAACCAAATAGCAACTTGAAGAAGCTCAACATCACACGCTACAAAGGTAGTAGATTTCCAAATTGGCTAAGTGGTTATCATTTACCCAACTTAGTGTATCTTGTACTGAATGGTTGTAGGTTATGTTCCTGTTTGCCACCACTTGGACAACTCCCTTCTCTTAAGAAACTTTCCATCTTTGACTGTGAAGGAATAAAGATCATCGATGAAGAGTTTTATGGCAATAATTCAACAATTGTTCCATTCAAGTCCCTTGAAGTTTTGAATTTTTGGAATATGGTCAATTGGGAGGAATGGATATGTCTAAGGTTTCCTTTGCTTAAAGAGCTTTCTATAAGAAATTGTCCTAAATTGAAAAGCACCTTGCCTCAACATCTTCCTTCTTTACAAAAATTGAGTATTAGTGGTTGCAAAGAGTTGGAGGAATGGTTATGTCTTGAAGGGTTTCTTTCTCTTAAAGAGCTTTATATAAGTGATTGTTCCAAATTCAAAAGGGTATTGCCACAAACTCTTCCTTCTTTACAAAAACTGATTATTCGTGATTGCAACAAGTTGGAGGAATGGTTATGCCCCGGAGAGTTTCCTTTGCTTAAAGAGTTTTCTATAAGAAGTTGTCCCGAATTGGAAAGGGCTCTGCCTCAACACCTTCCTTCTTTACAAAAACTGGATGTTATTGATTGCAACGAGTTGGAGGAATTGTTATGCCTTGGAGAGTTTCCTTTGCTTAAAGAGATTTCTATATTTGATTGTCCCGAATTGAAAAGGGCTCTGCCTCGACACCTTCCTTCTTTACAAAAACTGAAGATTAGTGATTGCAACAAGTTGGAGGCATCCATTCCCAAGGGTGATAATATGATAGAGTTAGATATATATAGATGTGATCGAATTTTGGTAAATGAATTGCCGACCAGCTTGAAAAGGTTACTCCTTTTGGATAATCAATACACCGCCGTGGACCAAAATTTAATCAATTTTCCCTTTCTTGAAGATTTGGGGTTGGATTGGAGTGGCTCTGTGAAATGTCCATCTTTGGATTTACGTTGCTATAATTCTCTTCATCAACTTTCAATAAAAGGATGGGGCTCCTCCTCCTTGCCCTTTTCACTAAACTTGTTCACCAGTCTTCGTACTCTGTATTTTGACGATTGTCAAGAGTTGGAATCGTTTCCAATGGGTGGTTTGCCTTCCAACTTGATCCAGTTTGGAATATTTAATTGCCCAAAACTGATTGGTTCGAGAGAGGAGTGGGGTTTGTTCCAACTCAATTCTCTGAAATTGTTTTTAGTTAGTGATGAGTTTGAAAACGTGGAGTCCTTCCCAGAGGAGAATCTGCTGCCACCAACTCTTCAGACTCTTCTTGTGAAAAATTGTTCAAAGCTAAGAAAAATGAACAACAAGGGTTTTCTCCACCTCAAATCTCTCAAAACTCTAGAGGTTTACAACTGCCCTAGTCTTGAGTGCTTGCCAGAGAAGGAGGCTCTACCCAACTCCCTTTCTGAATTGGTCATTGTAGATTGTCCAATAATAAAGGAGAAATATGAAAAAGAGGGAGGAGAGCGTTGGCATACAATTAGTCACATCTCTCATGTGAGGATTGATCACATTAAGCAGGAATGA

Protein sequence

>MS.gene77994.t1

MAELVAGAFLQSSFQVIIEKLTSVDIRDYFGRNNVDNLVKELNIALNSINLVLDEAEIKQYQNKYVKNWLDELKYVVYEADQLLDEISTDAMLNKLKAESEPLTTNLLGLVSALTTNPFESRLNEQLDKLELLAKQKKELRLGEGPSASNEGLVSWKPSKRLSSTALVDESSIYGRDDDKEKLIKFLLAGNGSGNQVPIISIVGLGGMGKTTLAKLVYNDNKIEKHFELKAWVYVSESFDVVGLTKAILKSFNPSANGEDLNLLQHQLQHMLMGKKYLLVLDDIWNGKTECWEQLLLPFNHGSSGSKIIVTTREKEVADHVLNSTKLFDLEQLEKNDCWSLFVKHAFHGKNVCEHQDLESIGRKIVEKCGGLPLAIKSLGQLLRKKFSEHEWIKILETDMWRLSDGDHNINSVLRLSYHNLPSDPKRCIAYCSIFPKGYRFEKEVLIKLWMAEGLLKCCGSDKSEEEFGNEIFCDLESISFFQQSFDPYHTYEYYVMHDLVNDLTKSVSDEFCIQIEDVKVERGLERTRHIWCSLQSNCVDHKSLEPICELTGLRSLILRGCWGVSISKNVQRDLFLGLKYLRMLKLIRCGLSELADEISSLKLLRYLDLSYTEITSLPDTICMLYNLQTLLLKGCHQLTELPSNFSKLVSLHHLELPYDYFEGCCIKKMPKHMGKLNNLQTLSYFIVEEHNESDLKELSELNHLHGTIHIKGLGNVSDPADAATSNLKDKKYLEELQMEFNGGREEMDERSVLVLEALQPNSNLKKLNITRYKGSRFPNWLSGYHLPNLVYLVLNGCRLCSCLPPLGQLPSLKKLSIFDCEGIKIIDEEFYGNNSTIVPFKSLEVLNFWNMVNWEEWICLRFPLLKELSIRNCPKLKSTLPQHLPSLQKLSISGCKELEEWLCLEGFLSLKELYISDCSKFKRVLPQTLPSLQKLIIRDCNKLEEWLCPGEFPLLKEFSIRSCPELERALPQHLPSLQKLDVIDCNELEELLCLGEFPLLKEISIFDCPELKRALPRHLPSLQKLKISDCNKLEASIPKGDNMIELDIYRCDRILVNELPTSLKRLLLLDNQYTAVDQNLINFPFLEDLGLDWSGSVKCPSLDLRCYNSLHQLSIKGWGSSSLPFSLNLFTSLRTLYFDDCQELESFPMGGLPSNLIQFGIFNCPKLIGSREEWGLFQLNSLKLFLVSDEFENVESFPEENLLPPTLQTLLVKNCSKLRKMNNKGFLHLKSLKTLEVYNCPSLECLPEKEALPNSLSELVIVDCPIIKEKYEKEGGERWHTISHISHVRIDHIKQE