AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene054467


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene054467.t1 MTR_8g089895 96.774 93 3 0 1 93 1 93 1.49e-60 187
MS.gene054467.t1 MTR_3g086790 68.687 99 25 4 1 93 1 99 1.12e-35 122
MS.gene054467.t1 MTR_3g080100 43.878 98 50 2 1 93 1 98 7.94e-21 83.2
MS.gene054467.t1 MTR_6g011610 42.105 95 49 2 4 93 23 116 7.80e-15 67.4
MS.gene054467.t1 MTR_5g038280 68.627 51 15 1 43 93 77 126 2.16e-14 67.0
MS.gene054467.t1 MTR_3g080100 73.171 41 11 0 53 93 19 59 1.78e-13 63.2
MS.gene054467.t1 MTR_6g011610 62.745 51 18 1 43 93 86 135 1.83e-13 63.9
MS.gene054467.t1 MTR_8g469430 63.265 49 17 1 45 93 81 128 4.64e-13 62.8
MS.gene054467.t1 MTR_4g107650 52.941 68 31 1 26 93 68 134 2.27e-12 61.2
MS.gene054467.t1 MTR_8g468210 54.386 57 24 1 37 93 62 116 2.06e-11 58.5
MS.gene054467.t1 MTR_5g039000 53.704 54 23 1 40 93 65 116 8.59e-11 56.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene054467.t1 AT2G22430 60.784 102 29 3 1 93 2 101 5.68e-30 108
MS.gene054467.t1 AT4G40060 56.311 103 30 3 1 93 1 98 2.67e-27 101
MS.gene054467.t1 AT5G65310 45.946 111 42 5 1 93 1 111 4.04e-19 79.7
MS.gene054467.t1 AT5G65310 51.429 70 24 1 34 93 24 93 3.48e-16 71.6
MS.gene054467.t1 AT3G01220 53.704 54 25 0 40 93 73 126 1.40e-12 61.6
MS.gene054467.t1 AT1G69780 66.667 42 14 0 52 93 83 124 3.11e-12 60.8
MS.gene054467.t1 AT5G15150 46.053 76 35 2 18 93 85 154 8.58e-12 59.7
MS.gene054467.t1 AT1G26960 52.778 72 29 3 24 93 42 110 6.30e-11 57.0

Find 0 sgRNAs with CRISPR-Local

Find 34 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAAATAATGAAGAAAAAA+AGG - 57386:12390-12409 MS.gene054467:intergenic 10.0%
!!! AAAAAGGTATTACTTTTTAA+AGG - 57386:12374-12393 MS.gene054467:intergenic 15.0%
!! AATATAGTGAATAAAAAGGA+AGG - 57386:12442-12461 MS.gene054467:intergenic 20.0%
!! ATGCAATATAGTGAATAAAA+AGG - 57386:12446-12465 MS.gene054467:intergenic 20.0%
! AATATGAATTAACCTGTTGT+TGG - 57386:12232-12251 MS.gene054467:intergenic 25.0%
! AGGAATCAAGCATAAAAAAT+TGG - 57386:12422-12441 MS.gene054467:intergenic 25.0%
! ATATGAATTAACCTGTTGTT+GGG - 57386:12231-12250 MS.gene054467:intergenic 25.0%
! TACTGTCATGTTTGATATTA+GGG + 57386:12491-12510 MS.gene054467:intron 25.0%
! TTACTGTCATGTTTGATATT+AGG + 57386:12490-12509 MS.gene054467:intron 25.0%
!!! TAGTTGATTTGTCAGAATTA+CGG - 57386:12603-12622 MS.gene054467:intergenic 25.0%
AAAACAAGCTTGAACCAGAT+AGG + 57386:12877-12896 MS.gene054467:CDS 35.0%
ACTAAGTGTGGATCAAGTTA+AGG + 57386:12830-12849 MS.gene054467:CDS 35.0%
ATATAGAAGAAGAGAGTCCA+AGG + 57386:12715-12734 MS.gene054467:intron 35.0%
CAATGCATCTCAACTGAATT+AGG + 57386:12637-12656 MS.gene054467:intron 35.0%
ATGACAATTTGCCCAACAAC+AGG + 57386:12217-12236 MS.gene054467:CDS 40.0%
ATGGAAGGACTAGATGAAGA+AGG + 57386:12774-12793 MS.gene054467:CDS 40.0%
GAAATTCCCTTCCATACACT+TGG - 57386:12746-12765 MS.gene054467:intergenic 40.0%
GAACAACCAAGTGTATGGAA+GGG + 57386:12737-12756 MS.gene054467:CDS 40.0%
GAAGAAACGAAGACTAAGTG+TGG + 57386:12818-12837 MS.gene054467:CDS 40.0%
TGTGGATCAAGTTAAGGCTT+TGG + 57386:12836-12855 MS.gene054467:CDS 40.0%
TTCATCTAGTCCTTCCATCA+CGG - 57386:12772-12791 MS.gene054467:intergenic 40.0%
! AAGGATGTGTTGATGAACCA+GGG + 57386:12793-12812 MS.gene054467:CDS 40.0%
!! CATGAGAGCACCTAAAGAAT+CGG - 57386:12200-12219 MS.gene054467:intergenic 40.0%
AAGGGAATTTCAGTCCGTGA+TGG + 57386:12755-12774 MS.gene054467:CDS 45.0%
CCAAGGAACAACCAAGTGTA+TGG + 57386:12732-12751 MS.gene054467:CDS 45.0%
CCATACACTTGGTTGTTCCT+TGG - 57386:12735-12754 MS.gene054467:intergenic 45.0%
GCAAGCTTCACTTTCCTATC+TGG - 57386:12894-12913 MS.gene054467:intergenic 45.0%
GGAACAACCAAGTGTATGGA+AGG + 57386:12736-12755 MS.gene054467:CDS 45.0%
! GAAGGATGTGTTGATGAACC+AGG + 57386:12792-12811 MS.gene054467:CDS 45.0%
! GAATTTCAGTCCGTGATGGA+AGG + 57386:12759-12778 MS.gene054467:CDS 45.0%
!! AAAAAAAAAATAAAATACTA+TGG + 57386:12524-12543 MS.gene054467:intron 5.0%
AGTCTTCGTTTCTTCTGCCC+TGG - 57386:12813-12832 MS.gene054467:intergenic 50.0%
CTTGGCAGCTCCGATTCTTT+AGG + 57386:12187-12206 MS.gene054467:CDS 50.0%
! GTGAAGCTTGCTCAAGAGCT+TGG + 57386:12903-12922 MS.gene054467:CDS 50.0%


Chromosome Type Strat End Strand Name
57386 gene 12178 12942 12178 ID=MS.gene054467
57386 mRNA 12178 12942 12178 ID=MS.gene054467.t1;Parent=MS.gene054467
57386 exon 12178 12238 12178 ID=MS.gene054467.t1.exon1;Parent=MS.gene054467.t1
57386 CDS 12178 12238 12178 ID=cds.MS.gene054467.t1;Parent=MS.gene054467.t1
57386 exon 12721 12942 12721 ID=MS.gene054467.t1.exon2;Parent=MS.gene054467.t1
57386 CDS 12721 12942 12721 ID=cds.MS.gene054467.t1;Parent=MS.gene054467.t1
Gene Sequence

>MS.gene054467

ATGAAGAGACTTGGCAGCTCCGATTCTTTAGGTGCTCTCATGACAATTTGCCCAACAACAGGTTAATTCATATTTCAGACTTTATTTTATTTTTGTGCTACATATTAATTCAGACATAATATTCATAGTGCGTGTTTGTTCTTTGTTGTCATGTCTCAACATTTTTTACAATCTAGCATCTCATGTGTTTAGACCTTTAAAAAGTAATACCTTTTTTTCTTCATTATTTATTTATCTTACTCCAATTTTTTATGCTTGATTCCTTCCTTTTTATTCACTATATTGCATTACAACTCATCATTTTTAGTTCAATTACTGTCATGTTTGATATTAGGGTGAATTTATTAAAAAAAAAATAAAATACTATGGTCTGATTTTTTTAAAATTATACTTTGTAGCTTTTGCAAAATCACTTCAGATCACCGTAATTCTGACAAATCAACTATGATACAAAACATTCAATGCATCTCAACTGAATTAGGCTTGATAGTAACTGTTACTATGTGTACTTATATGTGTGATTTCTTGCATTGATTGATATAGAAGAAGAGAGTCCAAGGAACAACCAAGTGTATGGAAGGGAATTTCAGTCCGTGATGGAAGGACTAGATGAAGAAGGATGTGTTGATGAACCAGGGCAGAAGAAACGAAGACTAAGTGTGGATCAAGTTAAGGCTTTGGAGAAGAATTTTGAAGTTGAAAACAAGCTTGAACCAGATAGGAAAGTGAAGCTTGCTCAAGAGCTTGGTTTGCAAACCAAGACAG

Protein sequence

>MS.gene054467.t1

MKRLGSSDSLGALMTICPTTEEESPRNNQVYGREFQSVMEGLDEEGCVDEPGQKKRRLSVDQVKALEKNFEVENKLEPDRKVKLAQELGLQTKT