Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78095.t1 | RHN60524.1 | 53.2 | 141 | 8 | 1 | 1 | 83 | 475 | 615 | 7.40E-30 | 139.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78095.t1 | B8AFI3 | 74.5 | 51 | 13 | 0 | 29 | 79 | 566 | 616 | 2.3e-19 | 95.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78095.t1 | G7JJN9 | 53.2 | 141 | 8 | 1 | 1 | 83 | 454 | 594 | 5.3e-30 | 139.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene058426 | MS.gene78095 | 0.822982 | 1.77E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78095.t1 | MTR_4g054320 | 92.727 | 55 | 4 | 0 | 29 | 83 | 43 | 97 | 5.91e-34 | 112 |
| MS.gene78095.t1 | MTR_4g054290 | 94.444 | 54 | 3 | 0 | 29 | 82 | 561 | 614 | 8.08e-33 | 119 |
| MS.gene78095.t1 | MTR_4g054150 | 92.727 | 55 | 4 | 0 | 29 | 83 | 540 | 594 | 2.88e-32 | 117 |
| MS.gene78095.t1 | MTR_7g090140 | 83.019 | 53 | 9 | 0 | 29 | 81 | 465 | 517 | 6.83e-28 | 104 |
| MS.gene78095.t1 | MTR_7g090100 | 84.615 | 52 | 8 | 0 | 29 | 80 | 559 | 610 | 3.11e-27 | 103 |
| MS.gene78095.t1 | MTR_7g090140 | 83.019 | 53 | 9 | 0 | 29 | 81 | 560 | 612 | 3.90e-27 | 102 |
| MS.gene78095.t1 | MTR_7g090120 | 82.692 | 52 | 9 | 0 | 29 | 80 | 561 | 612 | 1.69e-26 | 101 |
| MS.gene78095.t1 | MTR_8g009560 | 66.667 | 60 | 20 | 0 | 22 | 81 | 558 | 617 | 2.39e-25 | 97.8 |
| MS.gene78095.t1 | MTR_8g009590 | 49.254 | 67 | 29 | 1 | 21 | 82 | 589 | 655 | 3.13e-20 | 83.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78095.t1 | AT1G02205 | 54.386 | 57 | 24 | 1 | 29 | 83 | 404 | 460 | 9.38e-19 | 79.0 |
| MS.gene78095.t1 | AT1G02205 | 54.386 | 57 | 24 | 1 | 29 | 83 | 329 | 385 | 2.02e-18 | 77.8 |
| MS.gene78095.t1 | AT1G02205 | 54.386 | 57 | 24 | 1 | 29 | 83 | 569 | 625 | 3.08e-18 | 77.8 |
| MS.gene78095.t1 | AT1G02205 | 54.386 | 57 | 24 | 1 | 29 | 83 | 568 | 624 | 4.21e-18 | 77.4 |
| MS.gene78095.t1 | AT1G02205 | 54.386 | 57 | 24 | 1 | 29 | 83 | 573 | 629 | 4.60e-18 | 77.0 |
| MS.gene78095.t1 | AT2G37700 | 52.459 | 61 | 26 | 1 | 25 | 82 | 558 | 618 | 6.04e-18 | 77.0 |
| MS.gene78095.t1 | AT2G37700 | 52.459 | 61 | 26 | 1 | 25 | 82 | 549 | 609 | 6.09e-18 | 76.6 |
| MS.gene78095.t1 | AT2G37700 | 52.459 | 61 | 26 | 1 | 25 | 82 | 521 | 581 | 7.98e-18 | 76.6 |
| MS.gene78095.t1 | AT1G02190 | 54.386 | 57 | 24 | 1 | 25 | 79 | 566 | 622 | 6.24e-16 | 71.2 |
| MS.gene78095.t1 | AT1G02190 | 54.386 | 57 | 24 | 1 | 25 | 79 | 562 | 618 | 6.36e-16 | 71.2 |
Find 23 sgRNAs with CRISPR-Local
Find 144 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATTTGACATTGAGAAAGTA+TGG | 0.287267 | 4.4:-48804454 | MS.gene78095:CDS |
| CTAATTATTGTGGAATCTTA+AGG | 0.305879 | 4.4:+48804402 | None:intergenic |
| CAAGCACTCATGACTCTTCT+TGG | 0.310873 | 4.4:+48804539 | None:intergenic |
| TTAACCTTTGGAATATTGAT+TGG | 0.375431 | 4.4:+48806521 | None:intergenic |
| ATGAACATCCCATCTTTCTA+AGG | 0.375664 | 4.4:+48804493 | None:intergenic |
| ATGAGTGCTTGGCGCATTGC+TGG | 0.389012 | 4.4:-48804527 | MS.gene78095:CDS |
| TAATTATTGTGGAATCTTAA+GGG | 0.415654 | 4.4:+48804403 | None:intergenic |
| CGCCGTGTCCAATGGAAGAT+TGG | 0.463547 | 4.4:-48806552 | MS.gene78095:CDS |
| CCAAACTAGTCTAATTATTG+TGG | 0.481314 | 4.4:+48804392 | None:intergenic |
| TAATTCATGCCTTAGAAAGA+TGG | 0.494662 | 4.4:-48804502 | MS.gene78095:CDS |
| CAAGAAGAGTCATGAGTGCT+TGG | 0.516934 | 4.4:-48804538 | MS.gene78095:CDS |
| CGAAGGGTCGCCGTGTCCAA+TGG | 0.521226 | 4.4:-48806560 | MS.gene78095:CDS |
| AGCTGAAAGAGCTTGAACGA+AGG | 0.524659 | 4.4:-48806577 | MS.gene78095:CDS |
| AATTCATGCCTTAGAAAGAT+GGG | 0.527363 | 4.4:-48804501 | MS.gene78095:CDS |
| ATTGTGGAATCTTAAGGGGT+AGG | 0.544407 | 4.4:+48804408 | None:intergenic |
| TGATAGAACCAATCTTCCAT+TGG | 0.553017 | 4.4:+48806544 | None:intergenic |
| GCTGAAAGAGCTTGAACGAA+GGG | 0.563864 | 4.4:-48806576 | MS.gene78095:CDS |
| AATTATTGTGGAATCTTAAG+GGG | 0.566315 | 4.4:+48804404 | None:intergenic |
| ATCACCAATCAATATTCCAA+AGG | 0.573061 | 4.4:-48806525 | MS.gene78095:intron |
| ATTTGACATTGAGAAAGTAT+GGG | 0.587113 | 4.4:-48804453 | MS.gene78095:CDS |
| AGATGGGATGTTCATGAGTG+TGG | 0.605988 | 4.4:-48804485 | MS.gene78095:CDS |
| TGGGAAGCAAGTATTCGTCA+TGG | 0.654719 | 4.4:-48804434 | MS.gene78095:CDS |
| AACCAATCTTCCATTGGACA+CGG | 0.656421 | 4.4:+48806550 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAGAAAAAAAATATCAATTT+GGG | + | chr4.4:48805717-48805736 | None:intergenic | 10.0% |
| !! | ATATTAATTTACAAAAGAAT+TGG | - | chr4.4:48806642-48806661 | MS.gene78095:intron | 10.0% |
| !! | TAAAAAGTAAAATGATAAAA+TGG | + | chr4.4:48806004-48806023 | None:intergenic | 10.0% |
| !!! | ATAAGTAAATTTGATTTTTT+AGG | - | chr4.4:48806112-48806131 | MS.gene78095:intron | 10.0% |
| !!! | ATTTTTCTTAATACAATTTT+TGG | + | chr4.4:48804852-48804871 | None:intergenic | 10.0% |
| !!! | TTATTCTATTTTAATATGTT+TGG | - | chr4.4:48805302-48805321 | MS.gene78095:intron | 10.0% |
| !!! | TTTTCAAACAAATTAAAAAT+TGG | - | chr4.4:48806430-48806449 | MS.gene78095:intron | 10.0% |
| !! | AATGGACAAAAATTAAATAT+AGG | + | chr4.4:48805986-48806005 | None:intergenic | 15.0% |
| !! | AATTAAACTCATTTAAAAAG+CGG | - | chr4.4:48806548-48806567 | MS.gene78095:CDS | 15.0% |
| !! | ATGAATAACACTATTATAAT+AGG | - | chr4.4:48806224-48806243 | MS.gene78095:intron | 15.0% |
| !! | ATGGACAAAAATTAAATATA+GGG | + | chr4.4:48805985-48806004 | None:intergenic | 15.0% |
| !! | GAAGAAAAAAAATATCAATT+TGG | + | chr4.4:48805718-48805737 | None:intergenic | 15.0% |
| !! | TAAAACAATAAATTAACCTT+TGG | + | chr4.4:48805089-48805108 | None:intergenic | 15.0% |
| !!! | CAATTTTAGCTTATAAATAA+AGG | + | chr4.4:48804445-48804464 | None:intergenic | 15.0% |
| !!! | TAAAATTTTAAATTGACTAG+TGG | + | chr4.4:48806602-48806621 | None:intergenic | 15.0% |
| !!! | TTAAGTCTCAATTTTTTTTA+AGG | - | chr4.4:48805382-48805401 | MS.gene78095:intron | 15.0% |
| !! | AATAGGTTACTGTATTATAT+AGG | - | chr4.4:48804991-48805010 | MS.gene78095:intron | 20.0% |
| !! | ATAATGTAATTAACGATGAT+GGG | - | chr4.4:48806765-48806784 | MS.gene78095:intron | 20.0% |
| !! | ATAGGTTACTGTATTATATA+GGG | - | chr4.4:48804992-48805011 | MS.gene78095:intron | 20.0% |
| !! | ATGAACAATAAATTGCAAAT+AGG | - | chr4.4:48804974-48804993 | MS.gene78095:intron | 20.0% |
| !! | ATGATTACACGATTATAAAT+AGG | - | chr4.4:48806470-48806489 | MS.gene78095:intron | 20.0% |
| !! | TATAATGTAATTAACGATGA+TGG | - | chr4.4:48806764-48806783 | MS.gene78095:intron | 20.0% |
| !! | TTACTTATAATTAATAACGG+AGG | + | chr4.4:48806100-48806119 | None:intergenic | 20.0% |
| !! | TTTACTTATAATGATGTATG+TGG | + | chr4.4:48806152-48806171 | None:intergenic | 20.0% |
| !! | TTTATGAGATCATATGATAA+TGG | + | chr4.4:48806912-48806931 | None:intergenic | 20.0% |
| !!! | ATTCGGAAATTTTAAAAATG+AGG | + | chr4.4:48806043-48806062 | None:intergenic | 20.0% |
| !!! | ATTGGTATATGATTGTTTTT+AGG | - | chr4.4:48805491-48805510 | MS.gene78095:intron | 20.0% |
| !!! | CTTATTAAACATTTTGTACT+TGG | + | chr4.4:48804939-48804958 | None:intergenic | 20.0% |
| !!! | TACTTATAATTAATAACGGA+GGG | + | chr4.4:48806099-48806118 | None:intergenic | 20.0% |
| !!! | TTATTGTTTTAATCCTTCAT+TGG | - | chr4.4:48805098-48805117 | MS.gene78095:intron | 20.0% |
| !!! | TTCGGAAATTTTAAAAATGA+GGG | + | chr4.4:48806042-48806061 | None:intergenic | 20.0% |
| !!! | TTGGGTAGAATAATTATTTT+TGG | + | chr4.4:48805196-48805215 | None:intergenic | 20.0% |
| !!! | TTGGTATATGATTGTTTTTA+GGG | - | chr4.4:48805492-48805511 | MS.gene78095:intron | 20.0% |
| ! | AAAAATGAGGGTGAAAAATT+TGG | + | chr4.4:48806030-48806049 | None:intergenic | 25.0% |
| ! | AAAATGAGGGTGAAAAATTT+GGG | + | chr4.4:48806029-48806048 | None:intergenic | 25.0% |
| ! | AACCATCTAACTGAATTAAA+GGG | - | chr4.4:48804800-48804819 | MS.gene78095:intron | 25.0% |
| ! | AATCTACAACACATTAAATC+AGG | + | chr4.4:48805468-48805487 | None:intergenic | 25.0% |
| ! | ATCTCTCTAAATGAAAGAAA+TGG | + | chr4.4:48806729-48806748 | None:intergenic | 25.0% |
| ! | CAAAAACGAAAGTTTATAAC+GGG | + | chr4.4:48806884-48806903 | None:intergenic | 25.0% |
| ! | CATTAAAAATCTAACAGACA+TGG | - | chr4.4:48805748-48805767 | MS.gene78095:intron | 25.0% |
| ! | CCAAAAACGAAAGTTTATAA+CGG | + | chr4.4:48806885-48806904 | None:intergenic | 25.0% |
| ! | CTATTAATGTACAACAGAAT+TGG | - | chr4.4:48807030-48807049 | MS.gene78095:intron | 25.0% |
| ! | TAACCATCTAACTGAATTAA+AGG | - | chr4.4:48804799-48804818 | MS.gene78095:intron | 25.0% |
| ! | TAACTTATAGATAAACCAAG+CGG | + | chr4.4:48805285-48805304 | None:intergenic | 25.0% |
| ! | TAATTCAGTTAGATGGTTAA+TGG | + | chr4.4:48804798-48804817 | None:intergenic | 25.0% |
| ! | TATTTGACATTGAGAAAGTA+TGG | - | chr4.4:48807141-48807160 | MS.gene78095:intron | 25.0% |
| ! | TCATTTAAAAAGCGGATAAA+CGG | - | chr4.4:48806556-48806575 | MS.gene78095:CDS | 25.0% |
| ! | TTAACTTCAAATTCCAATGA+AGG | + | chr4.4:48805114-48805133 | None:intergenic | 25.0% |
| !! | AATATAGGGAAGTATATACA+CGG | + | chr4.4:48805971-48805990 | None:intergenic | 25.0% |
| !! | ATTTGACATTGAGAAAGTAT+GGG | - | chr4.4:48807142-48807161 | MS.gene78095:intron | 25.0% |
| !! | CAATCTTTTCTCATTTTCTT+TGG | + | chr4.4:48805855-48805874 | None:intergenic | 25.0% |
| !! | TTTTAAATTGACTAGTGGAA+AGG | + | chr4.4:48806597-48806616 | None:intergenic | 25.0% |
| !!! | GTCGTTGATCTTATTTTAAT+GGG | + | chr4.4:48806258-48806277 | None:intergenic | 25.0% |
| !!! | TAACACTTTTAAAGTGTGTT+CGG | + | chr4.4:48804699-48804718 | None:intergenic | 25.0% |
| !!! | TGTCGTTGATCTTATTTTAA+TGG | + | chr4.4:48806259-48806278 | None:intergenic | 25.0% |
| !!! | TTAACCTTTGGAATATTGAT+TGG | + | chr4.4:48805077-48805096 | None:intergenic | 25.0% |
| !!! | TTTTTTAGGTTCATTGAACA+TGG | - | chr4.4:48806126-48806145 | MS.gene78095:intron | 25.0% |
| AAATGTTAACCTGTGTCTTA+AGG | + | chr4.4:48805673-48805692 | None:intergenic | 30.0% | |
| AATGTGTTGTAGATTTCGAT+TGG | - | chr4.4:48805473-48805492 | MS.gene78095:intron | 30.0% | |
| AATTCATGCCTTAGAAAGAT+GGG | - | chr4.4:48807094-48807113 | MS.gene78095:intron | 30.0% | |
| ACCATCTAACTGAATTAAAG+GGG | - | chr4.4:48804801-48804820 | MS.gene78095:intron | 30.0% | |
| AGTCTATCAAAATTGACATC+AGG | + | chr4.4:48806401-48806420 | None:intergenic | 30.0% | |
| ATCAAAGGAAAACACAATAG+GGG | + | chr4.4:48804739-48804758 | None:intergenic | 30.0% | |
| ATCACCAATCAATATTCCAA+AGG | - | chr4.4:48805070-48805089 | MS.gene78095:intron | 30.0% | |
| CATTTAAAAAGCGGATAAAC+GGG | - | chr4.4:48806557-48806576 | MS.gene78095:CDS | 30.0% | |
| GAAAATTAGTTAACCCACTT+AGG | - | chr4.4:48806310-48806329 | MS.gene78095:intron | 30.0% | |
| GATCAAAGGAAAACACAATA+GGG | + | chr4.4:48804740-48804759 | None:intergenic | 30.0% | |
| TAATTCATGCCTTAGAAAGA+TGG | - | chr4.4:48807093-48807112 | MS.gene78095:intron | 30.0% | |
| TCTAAATGAAAGAAATGGAG+AGG | + | chr4.4:48806724-48806743 | None:intergenic | 30.0% | |
| TTTCTTAACATATGCCCTAA+GGG | + | chr4.4:48805533-48805552 | None:intergenic | 30.0% | |
| TTTGGAGGAAAATGAGAAAA+AGG | + | chr4.4:48805837-48805856 | None:intergenic | 30.0% | |
| ! | ATTGAACCTAAGTTCGATTT+TGG | + | chr4.4:48805215-48805234 | None:intergenic | 30.0% |
| ! | CCGTTATAAACTTTCGTTTT+TGG | - | chr4.4:48806882-48806901 | MS.gene78095:intron | 30.0% |
| ! | TCTTTTCTCATTTTCTTTGG+AGG | + | chr4.4:48805852-48805871 | None:intergenic | 30.0% |
| ! | TGCAAGTTTATGAGAGTATA+AGG | + | chr4.4:48805909-48805928 | None:intergenic | 30.0% |
| ! | TTGAACCTAAGTTCGATTTT+GGG | + | chr4.4:48805214-48805233 | None:intergenic | 30.0% |
| !!! | TTTAGAGTGTGCTATTTTCA+AGG | - | chr4.4:48806359-48806378 | MS.gene78095:intron | 30.0% |
| AATCACTTAATTCAACCGCT+TGG | - | chr4.4:48805267-48805286 | MS.gene78095:intron | 35.0% | |
| ATCTAACAGACATGGTTAGT+TGG | - | chr4.4:48805756-48805775 | MS.gene78095:intron | 35.0% | |
| ATGAACATCCCATCTTTCTA+AGG | + | chr4.4:48807105-48807124 | None:intergenic | 35.0% | |
| ATTAGTTAACCCACTTAGGT+TGG | - | chr4.4:48806314-48806333 | MS.gene78095:intron | 35.0% | |
| GAAATGGAGAGGAACATAAA+TGG | + | chr4.4:48806713-48806732 | None:intergenic | 35.0% | |
| GCTAAAATTGCAATGTTCTG+AGG | - | chr4.4:48804455-48804474 | MS.gene78095:CDS | 35.0% | |
| GGATCAAAGGAAAACACAAT+AGG | + | chr4.4:48804741-48804760 | None:intergenic | 35.0% | |
| GTTTCTTAACATATGCCCTA+AGG | + | chr4.4:48805534-48805553 | None:intergenic | 35.0% | |
| TAAATTGACTAGTGGAAAGG+TGG | + | chr4.4:48806594-48806613 | None:intergenic | 35.0% | |
| TCCCCTTTAATTCAGTTAGA+TGG | + | chr4.4:48804805-48804824 | None:intergenic | 35.0% | |
| TGATAGAACCAATCTTCCAT+TGG | + | chr4.4:48805054-48805073 | None:intergenic | 35.0% | |
| TGATCATTGCTGGTATATAG+TGG | + | chr4.4:48805884-48805903 | None:intergenic | 35.0% | |
| TTAAAGTGTGTTCGGATTGA+GGG | + | chr4.4:48804691-48804710 | None:intergenic | 35.0% | |
| TTCTACCCAAAATCGAACTT+AGG | - | chr4.4:48805206-48805225 | MS.gene78095:intron | 35.0% | |
| ! | ATGGTTAGTTGGAGATGATT+GGG | - | chr4.4:48805767-48805786 | MS.gene78095:intron | 35.0% |
| ! | TGTAGAGACTCATACTGATT+CGG | + | chr4.4:48806060-48806079 | None:intergenic | 35.0% |
| ! | TTTAAAGTGTGTTCGGATTG+AGG | + | chr4.4:48804692-48804711 | None:intergenic | 35.0% |
| AACCAATCTTCCATTGGACA+CGG | + | chr4.4:48805048-48805067 | None:intergenic | 40.0% | |
| ATTGTGGAATCTTAAGGGGT+AGG | + | chr4.4:48807190-48807209 | None:intergenic | 40.0% | |
| GAGCAAATGCAAGCATAAGA+AGG | - | chr4.4:48805798-48805817 | MS.gene78095:intron | 40.0% | |
| GTATAAGGAGTGATCATTGC+TGG | + | chr4.4:48805894-48805913 | None:intergenic | 40.0% | |
| GTTTCAGCTCAAGATCACAA+TGG | - | chr4.4:48805326-48805345 | MS.gene78095:intron | 40.0% | |
| TGAGGTTGTGTTTGAATGGA+GGG | - | chr4.4:48804473-48804492 | MS.gene78095:CDS | 40.0% | |
| TTGAGGGTTTAGGGGAAAAA+TGG | + | chr4.4:48804675-48804694 | None:intergenic | 40.0% | |
| ! | CATGGTTAGTTGGAGATGAT+TGG | - | chr4.4:48805766-48805785 | MS.gene78095:intron | 40.0% |
| ! | TAACTTGTGCCTTAAGACAC+AGG | - | chr4.4:48805661-48805680 | MS.gene78095:intron | 40.0% |
| !! | AGTGTTAACTTGTGCCCTTA+GGG | - | chr4.4:48805516-48805535 | MS.gene78095:intron | 40.0% |
| !! | GTTCTGAGGTTGTGTTTGAA+TGG | - | chr4.4:48804469-48804488 | MS.gene78095:CDS | 40.0% |
| !! | TAGTGTTAACTTGTGCCCTT+AGG | - | chr4.4:48805515-48805534 | MS.gene78095:intron | 40.0% |
| ACCATCAGACCAACCTAAGT+GGG | + | chr4.4:48806326-48806345 | None:intergenic | 45.0% | |
| AGAAGACGTCAAGGGATCAA+AGG | + | chr4.4:48804754-48804773 | None:intergenic | 45.0% | |
| AGATGGGATGTTCATGAGTG+TGG | - | chr4.4:48807110-48807129 | MS.gene78095:intron | 45.0% | |
| AGCTGAAAGAGCTTGAACGA+AGG | - | chr4.4:48805018-48805037 | MS.gene78095:intron | 45.0% | |
| AGGTTGTGTTTGAATGGAGG+GGG | - | chr4.4:48804475-48804494 | MS.gene78095:CDS | 45.0% | |
| ATCTTGAGCTTCCTCTAACC+AGG | - | chr4.4:48805431-48805450 | MS.gene78095:intron | 45.0% | |
| CAAGAAGAGTCATGAGTGCT+TGG | - | chr4.4:48807057-48807076 | MS.gene78095:intron | 45.0% | |
| CAAGCACTCATGACTCTTCT+TGG | + | chr4.4:48807059-48807078 | None:intergenic | 45.0% | |
| CATAAACTTGCACTCGTGTG+AGG | - | chr4.4:48805917-48805936 | MS.gene78095:intron | 45.0% | |
| CTGAGGTTGTGTTTGAATGG+AGG | - | chr4.4:48804472-48804491 | MS.gene78095:CDS | 45.0% | |
| GAGGTTGTGTTTGAATGGAG+GGG | - | chr4.4:48804474-48804493 | MS.gene78095:CDS | 45.0% | |
| GCTGAAAGAGCTTGAACGAA+GGG | - | chr4.4:48805019-48805038 | MS.gene78095:intron | 45.0% | |
| GCTGTCATAGAAGACGTCAA+GGG | + | chr4.4:48804762-48804781 | None:intergenic | 45.0% | |
| GGAGAGGAACATAAATGGAG+AGG | + | chr4.4:48806708-48806727 | None:intergenic | 45.0% | |
| GGGTTTAGGGGAAAAATGGA+TGG | + | chr4.4:48804671-48804690 | None:intergenic | 45.0% | |
| GTGTTCGGATTGAGGGTTTA+GGG | + | chr4.4:48804684-48804703 | None:intergenic | 45.0% | |
| TGCTGTCATAGAAGACGTCA+AGG | + | chr4.4:48804763-48804782 | None:intergenic | 45.0% | |
| TGGGAAGCAAGTATTCGTCA+TGG | - | chr4.4:48807161-48807180 | MS.gene78095:intron | 45.0% | |
| TGTGTTCGGATTGAGGGTTT+AGG | + | chr4.4:48804685-48804704 | None:intergenic | 45.0% | |
| TGTTCGGATTGAGGGTTTAG+GGG | + | chr4.4:48804683-48804702 | None:intergenic | 45.0% | |
| !! | AATTTACTTATAATTAATAA+CGG | + | chr4.4:48806103-48806122 | None:intergenic | 5.0% |
| !! | TAAATATAGAAATAATTTAT+TGG | + | chr4.4:48805635-48805654 | None:intergenic | 5.0% |
| !!! | AATTTTCTTTTTTAAAATTA+CGG | + | chr4.4:48804640-48804659 | None:intergenic | 5.0% |
| AACTTGCACTCGTGTGAGGT+TGG | - | chr4.4:48805921-48805940 | MS.gene78095:intron | 50.0% | |
| CACCATCAGACCAACCTAAG+TGG | + | chr4.4:48806327-48806346 | None:intergenic | 50.0% | |
| TGTTTGAATGGAGGGGGAAG+AGG | - | chr4.4:48804481-48804500 | MS.gene78095:CDS | 50.0% | |
| TTGAGCTTCCTCTAACCAGG+TGG | - | chr4.4:48805434-48805453 | MS.gene78095:intron | 50.0% | |
| !! | ACCCACTTAGGTTGGTCTGA+TGG | - | chr4.4:48806322-48806341 | MS.gene78095:intron | 50.0% |
| !! | CGATGATGGGACTCACTTAG+TGG | - | chr4.4:48806778-48806797 | MS.gene78095:intron | 50.0% |
| ATGAGTGCTTGGCGCATTGC+TGG | - | chr4.4:48807068-48807087 | MS.gene78095:intron | 55.0% | |
| CGCCGTGTCCAATGGAAGAT+TGG | - | chr4.4:48805043-48805062 | MS.gene78095:intron | 55.0% | |
| TGAATGGAGGGGGAAGAGGA+GGG | - | chr4.4:48804485-48804504 | MS.gene78095:CDS | 55.0% | |
| TTGAATGGAGGGGGAAGAGG+AGG | - | chr4.4:48804484-48804503 | MS.gene78095:CDS | 55.0% | |
| CCTCTAACCAGGTGGCGCGA+GGG | - | chr4.4:48805442-48805461 | MS.gene78095:intron | 65.0% | |
| CGAAGGGTCGCCGTGTCCAA+TGG | - | chr4.4:48805035-48805054 | MS.gene78095:intron | 65.0% | |
| TCCTCTAACCAGGTGGCGCG+AGG | - | chr4.4:48805441-48805460 | MS.gene78095:intron | 65.0% | |
| AATCAGGCCCTCGCGCCACC+TGG | + | chr4.4:48805452-48805471 | None:intergenic | 70.0% | |
| CCCTCGCGCCACCTGGTTAG+AGG | + | chr4.4:48805445-48805464 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 48804406 | 48807211 | 48804406 | ID=MS.gene78095 |
| chr4.4 | mRNA | 48804406 | 48807211 | 48804406 | ID=MS.gene78095.t1;Parent=MS.gene78095 |
| chr4.4 | exon | 48807204 | 48807211 | 48807204 | ID=MS.gene78095.t1.exon1;Parent=MS.gene78095.t1 |
| chr4.4 | CDS | 48807204 | 48807211 | 48807204 | ID=cds.MS.gene78095.t1;Parent=MS.gene78095.t1 |
| chr4.4 | exon | 48806526 | 48806604 | 48806526 | ID=MS.gene78095.t1.exon2;Parent=MS.gene78095.t1 |
| chr4.4 | CDS | 48806526 | 48806604 | 48806526 | ID=cds.MS.gene78095.t1;Parent=MS.gene78095.t1 |
| chr4.4 | exon | 48804406 | 48804570 | 48804406 | ID=MS.gene78095.t1.exon3;Parent=MS.gene78095.t1 |
| chr4.4 | CDS | 48804406 | 48804570 | 48804406 | ID=cds.MS.gene78095.t1;Parent=MS.gene78095.t1 |
| Gene Sequence |
| Protein sequence |
