Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78223.t1 | RHN46303.1 | 98.2 | 381 | 6 | 1 | 1 | 381 | 1 | 380 | 7.20E-221 | 776.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78223.t1 | Q3EB08 | 54.6 | 368 | 152 | 6 | 6 | 371 | 15 | 369 | 1.6e-107 | 391.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78223.t1 | A0A396H0R3 | 98.2 | 381 | 6 | 1 | 1 | 381 | 1 | 380 | 5.2e-221 | 776.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene052333 | MS.gene78223 | 0.812235 | 4.69E-51 | -1.69E-46 |
| MS.gene053166 | MS.gene78223 | 0.818581 | 1.82E-52 | -1.69E-46 |
| MS.gene060011 | MS.gene78223 | 0.825734 | 3.99E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78223.t1 | MTR_7g059040 | 97.638 | 381 | 8 | 1 | 1 | 381 | 1 | 380 | 0.0 | 754 |
| MS.gene78223.t1 | MTR_0197s0070 | 97.638 | 381 | 8 | 1 | 1 | 381 | 1 | 380 | 0.0 | 754 |
| MS.gene78223.t1 | MTR_8g069800 | 28.060 | 335 | 215 | 12 | 10 | 337 | 18 | 333 | 2.25e-25 | 106 |
| MS.gene78223.t1 | MTR_5g033880 | 26.286 | 350 | 217 | 15 | 10 | 346 | 17 | 338 | 2.46e-20 | 92.0 |
| MS.gene78223.t1 | MTR_5g043750 | 25.989 | 354 | 225 | 14 | 3 | 346 | 10 | 336 | 5.35e-19 | 87.8 |
| MS.gene78223.t1 | MTR_8g028250 | 24.928 | 345 | 184 | 17 | 10 | 314 | 47 | 356 | 7.40e-13 | 69.7 |
| MS.gene78223.t1 | MTR_8g028220 | 24.545 | 330 | 199 | 13 | 10 | 314 | 47 | 351 | 8.17e-13 | 69.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78223.t1 | AT3G24760 | 53.887 | 373 | 157 | 6 | 2 | 372 | 11 | 370 | 6.63e-128 | 373 |
| MS.gene78223.t1 | AT3G24760 | 53.887 | 373 | 157 | 6 | 2 | 372 | 11 | 370 | 6.63e-128 | 373 |
| MS.gene78223.t1 | AT1G23390 | 27.937 | 383 | 232 | 16 | 3 | 366 | 16 | 373 | 5.95e-26 | 108 |
Find 91 sgRNAs with CRISPR-Local
Find 107 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTAGGGTTATTAGGCCTTC+TGG | 0.151678 | 7.4:+44420857 | MS.gene78223:CDS |
| GTTGGTGGTGTTAGGTTTAT+TGG | 0.216493 | 7.4:+44420620 | MS.gene78223:CDS |
| TGAAATCTATGACCCTCTTT+TGG | 0.247322 | 7.4:+44420676 | MS.gene78223:CDS |
| TTTCTTTCTTGATTGCTTGT+AGG | 0.278429 | 7.4:+44420888 | MS.gene78223:CDS |
| GTTTCACTACATAGTATTCT+TGG | 0.284085 | 7.4:+44421262 | MS.gene78223:CDS |
| AAAGGGAAGTTCTTTGTGTT+TGG | 0.300775 | 7.4:+44420779 | MS.gene78223:CDS |
| TTGCTTTGTAGTTTGTTTGA+TGG | 0.307726 | 7.4:+44421025 | MS.gene78223:CDS |
| TTAGGGTTATTAGGCCTTCT+GGG | 0.308613 | 7.4:+44420858 | MS.gene78223:CDS |
| AAAGGAAGATGATGAGATTA+TGG | 0.313154 | 7.4:-44420273 | None:intergenic |
| CTTCAACAGTTTGCAAACTA+TGG | 0.313723 | 7.4:+44420246 | MS.gene78223:CDS |
| AAACCATGGTTCTTTCTTCA+TGG | 0.317661 | 7.4:+44420320 | MS.gene78223:CDS |
| GTGAGAATGGTAAGTGTTAT+TGG | 0.319722 | 7.4:+44421173 | MS.gene78223:CDS |
| TTCTTTCTTGATTGCTTGTA+GGG | 0.326494 | 7.4:+44420889 | MS.gene78223:CDS |
| GGAGTGATGTTAGGGTTATT+AGG | 0.327480 | 7.4:+44420849 | MS.gene78223:CDS |
| TTGACTTGAAGCTTCGTGTT+TGG | 0.338761 | 7.4:+44420828 | MS.gene78223:CDS |
| TTGACCCTTCTTCTAACTCT+TGG | 0.344140 | 7.4:+44420384 | MS.gene78223:CDS |
| TCTTTGAAGTTTATTGTTGT+TGG | 0.349263 | 7.4:+44420602 | MS.gene78223:CDS |
| AAGGGAAGTTCTTTGTGTTT+GGG | 0.349428 | 7.4:+44420780 | MS.gene78223:CDS |
| TTCGTGTTTGGAGTGATGTT+AGG | 0.355803 | 7.4:+44420840 | MS.gene78223:CDS |
| AGTTGCCATCACTGATGAAT+AGG | 0.361657 | 7.4:+44421209 | MS.gene78223:CDS |
| CAATTCTCCGTCCTCTTGCT+TGG | 0.382425 | 7.4:+44420513 | MS.gene78223:CDS |
| TTGGTTATGGTTTGAAGAAA+AGG | 0.383645 | 7.4:-44420291 | None:intergenic |
| ATTGAAGTATAGACAAAGTT+AGG | 0.394479 | 7.4:-44420494 | None:intergenic |
| AGCTTGAAGTGTGTTGGGTT+GGG | 0.394506 | 7.4:+44421070 | MS.gene78223:CDS |
| CTTTCATCTGCTTTGTTCAA+AGG | 0.395209 | 7.4:+44420761 | MS.gene78223:CDS |
| CCAATAAAAGAAGTGTTGTT+AGG | 0.405770 | 7.4:-44420443 | None:intergenic |
| GTGGGTCTAGCTTCAATTTG+TGG | 0.409090 | 7.4:+44420948 | MS.gene78223:CDS |
| TTATTGTTGTTGGTGGTGTT+AGG | 0.413713 | 7.4:+44420612 | MS.gene78223:CDS |
| GTTGTTGAGGTGTTGGAAGA+AGG | 0.425039 | 7.4:-44420409 | None:intergenic |
| TTTCATCTGCTTTGTTCAAA+GGG | 0.427162 | 7.4:+44420762 | MS.gene78223:CDS |
| TTGCTAGCTTGAAGTGTGTT+GGG | 0.442993 | 7.4:+44421065 | MS.gene78223:CDS |
| TTGAAGTTTATTGTTGTTGG+TGG | 0.447612 | 7.4:+44420605 | MS.gene78223:CDS |
| TAGCTTGAAGTGTGTTGGGT+TGG | 0.448669 | 7.4:+44421069 | MS.gene78223:CDS |
| GTTTGCAAACTGTTGAAGCT+TGG | 0.452592 | 7.4:-44420241 | None:intergenic |
| TCGTGTTTGGAGTGATGTTA+GGG | 0.457398 | 7.4:+44420841 | MS.gene78223:CDS |
| TGAAGAGGTTGTTGAGGTGT+TGG | 0.458634 | 7.4:-44420416 | None:intergenic |
| ATGGTAAGTGTTATTGGAGG+AGG | 0.460194 | 7.4:+44421179 | MS.gene78223:CDS |
| TTTCCAGATCGAAAATCAAC+AGG | 0.460994 | 7.4:-44420725 | None:intergenic |
| TGGGTCTAGCTTCAATTTGT+GGG | 0.461426 | 7.4:+44420949 | MS.gene78223:CDS |
| TCTTGATTGCTTGTAGGGAA+AGG | 0.477486 | 7.4:+44420894 | MS.gene78223:CDS |
| TTTGCTAGCTTGAAGTGTGT+TGG | 0.482579 | 7.4:+44421064 | MS.gene78223:CDS |
| AGTATGGAGATTTGTGAGAT+TGG | 0.484934 | 7.4:+44420986 | MS.gene78223:CDS |
| AGGAACCAAGAGTTAGAAGA+AGG | 0.486009 | 7.4:-44420389 | None:intergenic |
| GGTCGCGGTGGTGGTGAGAA+TGG | 0.491797 | 7.4:+44421160 | MS.gene78223:CDS |
| GTTGAAGCTTGGATCAAAGA+TGG | 0.496126 | 7.4:-44420230 | None:intergenic |
| CCTAAAAGAGGATTGATCCT+AGG | 0.505560 | 7.4:-44420560 | None:intergenic |
| GATTGGTAGATGAGAAAGGA+TGG | 0.508284 | 7.4:-44420207 | None:intergenic |
| GAGATTCGCGGTCGCGGTGG+TGG | 0.518849 | 7.4:+44421151 | MS.gene78223:CDS |
| AGAGTTAGAAGAAGGGTCAA+AGG | 0.532631 | 7.4:-44420381 | None:intergenic |
| ATGGGATTGGTAGATGAGAA+AGG | 0.535378 | 7.4:-44420211 | None:intergenic |
| GATCGAAAATCAACAGGAAG+AGG | 0.535514 | 7.4:-44420719 | None:intergenic |
| TTGAAGCTTGGATCAAAGAT+GGG | 0.536882 | 7.4:-44420229 | None:intergenic |
| AACACGAAGCTTCAAGTCAA+AGG | 0.548935 | 7.4:-44420825 | None:intergenic |
| CGAATCTCACAAACACAAGC+CGG | 0.549382 | 7.4:-44421136 | None:intergenic |
| TAGTTTGTTTGATGGTGATG+AGG | 0.554195 | 7.4:+44421033 | MS.gene78223:CDS |
| TGAAACCTATTCATCAGTGA+TGG | 0.558780 | 7.4:-44421214 | None:intergenic |
| GCTTGGATCAAAGATGGGAT+TGG | 0.562325 | 7.4:-44420224 | None:intergenic |
| GTCTAGCTTCAATTTGTGGG+AGG | 0.563229 | 7.4:+44420952 | MS.gene78223:CDS |
| TGGTAAGTGTTATTGGAGGA+GGG | 0.563874 | 7.4:+44421180 | MS.gene78223:CDS |
| GGATAGTGAAGAGGTTGTTG+AGG | 0.566197 | 7.4:-44420422 | None:intergenic |
| GTGTTGTTAGGATAGTGAAG+AGG | 0.569556 | 7.4:-44420431 | None:intergenic |
| CGAAAATCAACAGGAAGAGG+AGG | 0.571372 | 7.4:-44420716 | None:intergenic |
| GAGAAAGGATGGATTCTATG+AGG | 0.571863 | 7.4:-44420196 | None:intergenic |
| GTGTTTGCAATTCACCAAGT+GGG | 0.573801 | 7.4:+44420930 | MS.gene78223:CDS |
| TCATTGAAAACACCTAAAAG+AGG | 0.574354 | 7.4:-44420572 | None:intergenic |
| AAATCCCAAGAACCCAAAAG+AGG | 0.574497 | 7.4:-44420689 | None:intergenic |
| AAAGAAAACACAACCCCAGA+AGG | 0.576313 | 7.4:-44420872 | None:intergenic |
| TTCATCTTACTTCTTCATCA+CGG | 0.577527 | 7.4:+44420469 | MS.gene78223:CDS |
| CTACATAGTATTCTTGGTGA+AGG | 0.579604 | 7.4:+44421268 | MS.gene78223:CDS |
| ATCGATCTCAATGAAGTCCA+TGG | 0.579801 | 7.4:-44421297 | None:intergenic |
| GCTTGTGTTTGTGAGATTCG+CGG | 0.581896 | 7.4:+44421139 | MS.gene78223:CDS |
| TAGGGTTATTAGGCCTTCTG+GGG | 0.583807 | 7.4:+44420859 | MS.gene78223:CDS |
| TAGAACTCCAAGCAAGAGGA+CGG | 0.590900 | 7.4:-44420520 | None:intergenic |
| GTTTGTGAGATTCGCGGTCG+CGG | 0.591606 | 7.4:+44421145 | MS.gene78223:CDS |
| ATCCTAGGAAAATGAAGAGG+TGG | 0.594206 | 7.4:-44420545 | None:intergenic |
| ATTCTATGAGGTCTAAGCTA+AGG | 0.599542 | 7.4:-44420184 | None:intergenic |
| AGAATGGTAAGTGTTATTGG+AGG | 0.602235 | 7.4:+44421176 | MS.gene78223:CDS |
| GAATCTCACAAACACAAGCC+GGG | 0.614509 | 7.4:-44421135 | None:intergenic |
| GGAGTAGAACTCCAAGCAAG+AGG | 0.619660 | 7.4:-44420524 | None:intergenic |
| GGAACCAAGAGTTAGAAGAA+GGG | 0.622485 | 7.4:-44420388 | None:intergenic |
| AATCCCAAGAACCCAAAAGA+GGG | 0.629413 | 7.4:-44420688 | None:intergenic |
| TTCATCAGTGATGGCAACTG+AGG | 0.630128 | 7.4:-44421205 | None:intergenic |
| CTTGGTGAAGGTCAAAACCA+TGG | 0.646516 | 7.4:+44421280 | MS.gene78223:CDS |
| GGTGTTTGCAATTCACCAAG+TGG | 0.653796 | 7.4:+44420929 | MS.gene78223:CDS |
| GGATTATCATAGGATGTACC+CGG | 0.659702 | 7.4:+44421117 | MS.gene78223:CDS |
| AAACTACAAAGCAAATCATG+AGG | 0.663149 | 7.4:-44421016 | None:intergenic |
| AAATTGAAGCTAGACCCACT+TGG | 0.671997 | 7.4:-44420944 | None:intergenic |
| TGTGAGATTCGCGGTCGCGG+TGG | 0.673056 | 7.4:+44421148 | MS.gene78223:CDS |
| TTGATCCTAGGAAAATGAAG+AGG | 0.676264 | 7.4:-44420548 | None:intergenic |
| AACGATCTTCTATATCAACA+AGG | 0.688081 | 7.4:-44420646 | None:intergenic |
| ATACCATGAAGAAAGAACCA+TGG | 0.722416 | 7.4:-44420323 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TCTTATATATGTTTTCAATG+AGG | + | chr7.4:44421096-44421115 | MS.gene78223:CDS | 20.0% |
| ! | ATTGAAGTATAGACAAAGTT+AGG | - | chr7.4:44420497-44420516 | None:intergenic | 25.0% |
| !! | TTTTCAATGAGGATTATCAT+AGG | + | chr7.4:44421107-44421126 | MS.gene78223:CDS | 25.0% |
| !!! | TCTTTGAAGTTTATTGTTGT+TGG | + | chr7.4:44420602-44420621 | MS.gene78223:CDS | 25.0% |
| !!! | TGTTTTTGGAAGATATGTTA+TGG | - | chr7.4:44420349-44420368 | None:intergenic | 25.0% |
| AAACTACAAAGCAAATCATG+AGG | - | chr7.4:44421019-44421038 | None:intergenic | 30.0% | |
| AAAGGAAGATGATGAGATTA+TGG | - | chr7.4:44420276-44420295 | None:intergenic | 30.0% | |
| AACGATCTTCTATATCAACA+AGG | - | chr7.4:44420649-44420668 | None:intergenic | 30.0% | |
| ATAACCAAAAACACAAACCA+TGG | + | chr7.4:44420306-44420325 | MS.gene78223:CDS | 30.0% | |
| GTTTCACTACATAGTATTCT+TGG | + | chr7.4:44421262-44421281 | MS.gene78223:CDS | 30.0% | |
| TCATTGAAAACACCTAAAAG+AGG | - | chr7.4:44420575-44420594 | None:intergenic | 30.0% | |
| TTCATCTTACTTCTTCATCA+CGG | + | chr7.4:44420469-44420488 | MS.gene78223:CDS | 30.0% | |
| TTCTTTCTTGATTGCTTGTA+GGG | + | chr7.4:44420889-44420908 | MS.gene78223:CDS | 30.0% | |
| TTGGTTATGGTTTGAAGAAA+AGG | - | chr7.4:44420294-44420313 | None:intergenic | 30.0% | |
| TTTCTTTCTTGATTGCTTGT+AGG | + | chr7.4:44420888-44420907 | MS.gene78223:CDS | 30.0% | |
| ! | CCTAACAACACTTCTTTTAT+TGG | + | chr7.4:44420443-44420462 | MS.gene78223:CDS | 30.0% |
| ! | GGCAAAAGATTGATTGTTTT+TGG | - | chr7.4:44420363-44420382 | None:intergenic | 30.0% |
| ! | TTGAAGTTTATTGTTGTTGG+TGG | + | chr7.4:44420605-44420624 | MS.gene78223:CDS | 30.0% |
| ! | TTTCATCTGCTTTGTTCAAA+GGG | + | chr7.4:44420762-44420781 | MS.gene78223:CDS | 30.0% |
| !! | CCAATAAAAGAAGTGTTGTT+AGG | - | chr7.4:44420446-44420465 | None:intergenic | 30.0% |
| !! | CTTTTAGGTGTTTTCAATGA+TGG | + | chr7.4:44420575-44420594 | MS.gene78223:CDS | 30.0% |
| !! | TTGCTTTGTAGTTTGTTTGA+TGG | + | chr7.4:44421025-44421044 | MS.gene78223:CDS | 30.0% |
| !!! | ATGGTTTGTGTTTTTGGTTA+TGG | - | chr7.4:44420307-44420326 | None:intergenic | 30.0% |
| AAACCATGGTTCTTTCTTCA+TGG | + | chr7.4:44420320-44420339 | MS.gene78223:CDS | 35.0% | |
| AAAGGGAAGTTCTTTGTGTT+TGG | + | chr7.4:44420779-44420798 | MS.gene78223:CDS | 35.0% | |
| AAGGGAAGTTCTTTGTGTTT+GGG | + | chr7.4:44420780-44420799 | MS.gene78223:CDS | 35.0% | |
| AGTATGGAGATTTGTGAGAT+TGG | + | chr7.4:44420986-44421005 | MS.gene78223:CDS | 35.0% | |
| ATACCATGAAGAAAGAACCA+TGG | - | chr7.4:44420326-44420345 | None:intergenic | 35.0% | |
| ATTCTATGAGGTCTAAGCTA+AGG | - | chr7.4:44420187-44420206 | None:intergenic | 35.0% | |
| CTACATAGTATTCTTGGTGA+AGG | + | chr7.4:44421268-44421287 | MS.gene78223:CDS | 35.0% | |
| CTTCAACAGTTTGCAAACTA+TGG | + | chr7.4:44420246-44420265 | MS.gene78223:CDS | 35.0% | |
| GTGAGAATGGTAAGTGTTAT+TGG | + | chr7.4:44421173-44421192 | MS.gene78223:CDS | 35.0% | |
| TGAAACCTATTCATCAGTGA+TGG | - | chr7.4:44421217-44421236 | None:intergenic | 35.0% | |
| TTGAAGCTTGGATCAAAGAT+GGG | - | chr7.4:44420232-44420251 | None:intergenic | 35.0% | |
| TTGATCCTAGGAAAATGAAG+AGG | - | chr7.4:44420551-44420570 | None:intergenic | 35.0% | |
| TTTCCAGATCGAAAATCAAC+AGG | - | chr7.4:44420728-44420747 | None:intergenic | 35.0% | |
| ! | AGAATGGTAAGTGTTATTGG+AGG | + | chr7.4:44421176-44421195 | MS.gene78223:CDS | 35.0% |
| ! | CTTTCATCTGCTTTGTTCAA+AGG | + | chr7.4:44420761-44420780 | MS.gene78223:CDS | 35.0% |
| ! | GAAATCTATGACCCTCTTTT+GGG | + | chr7.4:44420677-44420696 | MS.gene78223:CDS | 35.0% |
| ! | TGAAATCTATGACCCTCTTT+TGG | + | chr7.4:44420676-44420695 | MS.gene78223:CDS | 35.0% |
| !! | AGAACCATGGTTTGTGTTTT+TGG | - | chr7.4:44420313-44420332 | None:intergenic | 35.0% |
| !! | GGAGGTTGATGAAAAAAGTA+TGG | + | chr7.4:44420970-44420989 | MS.gene78223:CDS | 35.0% |
| !! | TAGTTTGTTTGATGGTGATG+AGG | + | chr7.4:44421033-44421052 | MS.gene78223:CDS | 35.0% |
| !! | TTATTGTTGTTGGTGGTGTT+AGG | + | chr7.4:44420612-44420631 | MS.gene78223:CDS | 35.0% |
| AAAGAAAACACAACCCCAGA+AGG | - | chr7.4:44420875-44420894 | None:intergenic | 40.0% | |
| AAATCCCAAGAACCCAAAAG+AGG | - | chr7.4:44420692-44420711 | None:intergenic | 40.0% | |
| AAATTGAAGCTAGACCCACT+TGG | - | chr7.4:44420947-44420966 | None:intergenic | 40.0% | |
| AACACGAAGCTTCAAGTCAA+AGG | - | chr7.4:44420828-44420847 | None:intergenic | 40.0% | |
| AATCCCAAGAACCCAAAAGA+GGG | - | chr7.4:44420691-44420710 | None:intergenic | 40.0% | |
| AGAGTTAGAAGAAGGGTCAA+AGG | - | chr7.4:44420384-44420403 | None:intergenic | 40.0% | |
| AGGAACCAAGAGTTAGAAGA+AGG | - | chr7.4:44420392-44420411 | None:intergenic | 40.0% | |
| AGTTGCCATCACTGATGAAT+AGG | + | chr7.4:44421209-44421228 | MS.gene78223:CDS | 40.0% | |
| ATCCTAGGAAAATGAAGAGG+TGG | - | chr7.4:44420548-44420567 | None:intergenic | 40.0% | |
| CCTAAAAGAGGATTGATCCT+AGG | - | chr7.4:44420563-44420582 | None:intergenic | 40.0% | |
| GATCGAAAATCAACAGGAAG+AGG | - | chr7.4:44420722-44420741 | None:intergenic | 40.0% | |
| GATTGGTAGATGAGAAAGGA+TGG | - | chr7.4:44420210-44420229 | None:intergenic | 40.0% | |
| GGAACCAAGAGTTAGAAGAA+GGG | - | chr7.4:44420391-44420410 | None:intergenic | 40.0% | |
| GGAGTGATGTTAGGGTTATT+AGG | + | chr7.4:44420849-44420868 | MS.gene78223:CDS | 40.0% | |
| GGATTATCATAGGATGTACC+CGG | + | chr7.4:44421117-44421136 | MS.gene78223:CDS | 40.0% | |
| GTGTTTGCAATTCACCAAGT+GGG | + | chr7.4:44420930-44420949 | MS.gene78223:CDS | 40.0% | |
| GTTGAAGCTTGGATCAAAGA+TGG | - | chr7.4:44420233-44420252 | None:intergenic | 40.0% | |
| GTTTGCAAACTGTTGAAGCT+TGG | - | chr7.4:44420244-44420263 | None:intergenic | 40.0% | |
| TCTTGATTGCTTGTAGGGAA+AGG | + | chr7.4:44420894-44420913 | MS.gene78223:CDS | 40.0% | |
| TTAGGGTTATTAGGCCTTCT+GGG | + | chr7.4:44420858-44420877 | MS.gene78223:CDS | 40.0% | |
| TTGACCCTTCTTCTAACTCT+TGG | + | chr7.4:44420384-44420403 | MS.gene78223:CDS | 40.0% | |
| ! | ATGGGATTGGTAGATGAGAA+AGG | - | chr7.4:44420214-44420233 | None:intergenic | 40.0% |
| ! | ATGGTAAGTGTTATTGGAGG+AGG | + | chr7.4:44421179-44421198 | MS.gene78223:CDS | 40.0% |
| ! | CCTAGGATCAATCCTCTTTT+AGG | + | chr7.4:44420560-44420579 | MS.gene78223:CDS | 40.0% |
| ! | GAGAAAGGATGGATTCTATG+AGG | - | chr7.4:44420199-44420218 | None:intergenic | 40.0% |
| ! | GTGTTGTTAGGATAGTGAAG+AGG | - | chr7.4:44420434-44420453 | None:intergenic | 40.0% |
| ! | TCGTGTTTGGAGTGATGTTA+GGG | + | chr7.4:44420841-44420860 | MS.gene78223:CDS | 40.0% |
| ! | TGGGTCTAGCTTCAATTTGT+GGG | + | chr7.4:44420949-44420968 | MS.gene78223:CDS | 40.0% |
| ! | TGGTAAGTGTTATTGGAGGA+GGG | + | chr7.4:44421180-44421199 | MS.gene78223:CDS | 40.0% |
| ! | TTCGTGTTTGGAGTGATGTT+AGG | + | chr7.4:44420840-44420859 | MS.gene78223:CDS | 40.0% |
| ! | TTGACTTGAAGCTTCGTGTT+TGG | + | chr7.4:44420828-44420847 | MS.gene78223:CDS | 40.0% |
| ! | TTGCTAGCTTGAAGTGTGTT+GGG | + | chr7.4:44421065-44421084 | MS.gene78223:CDS | 40.0% |
| ! | TTTGCTAGCTTGAAGTGTGT+TGG | + | chr7.4:44421064-44421083 | MS.gene78223:CDS | 40.0% |
| !! | GTTGGTGGTGTTAGGTTTAT+TGG | + | chr7.4:44420620-44420639 | MS.gene78223:CDS | 40.0% |
| !!! | CTTCCTGTTGATTTTCGATC+TGG | + | chr7.4:44420722-44420741 | MS.gene78223:CDS | 40.0% |
| AGCTTGAAGTGTGTTGGGTT+GGG | + | chr7.4:44421070-44421089 | MS.gene78223:CDS | 45.0% | |
| CGAAAATCAACAGGAAGAGG+AGG | - | chr7.4:44420719-44420738 | None:intergenic | 45.0% | |
| CGAATCTCACAAACACAAGC+CGG | - | chr7.4:44421139-44421158 | None:intergenic | 45.0% | |
| CTTGGTGAAGGTCAAAACCA+TGG | + | chr7.4:44421280-44421299 | MS.gene78223:CDS | 45.0% | |
| GAATCTCACAAACACAAGCC+GGG | - | chr7.4:44421138-44421157 | None:intergenic | 45.0% | |
| GCTTGGATCAAAGATGGGAT+TGG | - | chr7.4:44420227-44420246 | None:intergenic | 45.0% | |
| GCTTGTGTTTGTGAGATTCG+CGG | + | chr7.4:44421139-44421158 | MS.gene78223:CDS | 45.0% | |
| GGATAGTGAAGAGGTTGTTG+AGG | - | chr7.4:44420425-44420444 | None:intergenic | 45.0% | |
| GGTGTTTGCAATTCACCAAG+TGG | + | chr7.4:44420929-44420948 | MS.gene78223:CDS | 45.0% | |
| GTTAGGGTTATTAGGCCTTC+TGG | + | chr7.4:44420857-44420876 | MS.gene78223:CDS | 45.0% | |
| TAGAACTCCAAGCAAGAGGA+CGG | - | chr7.4:44420523-44420542 | None:intergenic | 45.0% | |
| TAGCTTGAAGTGTGTTGGGT+TGG | + | chr7.4:44421069-44421088 | MS.gene78223:CDS | 45.0% | |
| TAGGGTTATTAGGCCTTCTG+GGG | + | chr7.4:44420859-44420878 | MS.gene78223:CDS | 45.0% | |
| TGAAGAGGTTGTTGAGGTGT+TGG | - | chr7.4:44420419-44420438 | None:intergenic | 45.0% | |
| TTCATCAGTGATGGCAACTG+AGG | - | chr7.4:44421208-44421227 | None:intergenic | 45.0% | |
| ! | CTCCACCTCTTCATTTTCCT+AGG | + | chr7.4:44420543-44420562 | MS.gene78223:CDS | 45.0% |
| ! | GTCTAGCTTCAATTTGTGGG+AGG | + | chr7.4:44420952-44420971 | MS.gene78223:CDS | 45.0% |
| ! | GTGGGTCTAGCTTCAATTTG+TGG | + | chr7.4:44420948-44420967 | MS.gene78223:CDS | 45.0% |
| !! | GTTGTTGAGGTGTTGGAAGA+AGG | - | chr7.4:44420412-44420431 | None:intergenic | 45.0% |
| !!! | AGGGAAAGGCTTGTTTTAGC+TGG | + | chr7.4:44420908-44420927 | MS.gene78223:CDS | 45.0% |
| !!! | ATGACCCTCTTTTGGGTTCT+TGG | + | chr7.4:44420684-44420703 | MS.gene78223:CDS | 45.0% |
| !!! | TGACCCTCTTTTGGGTTCTT+GGG | + | chr7.4:44420685-44420704 | MS.gene78223:CDS | 45.0% |
| CAATTCTCCGTCCTCTTGCT+TGG | + | chr7.4:44420513-44420532 | MS.gene78223:CDS | 50.0% | |
| GGAGTAGAACTCCAAGCAAG+AGG | - | chr7.4:44420527-44420546 | None:intergenic | 50.0% | |
| GTTTGTGAGATTCGCGGTCG+CGG | + | chr7.4:44421145-44421164 | MS.gene78223:CDS | 55.0% | |
| TGTGAGATTCGCGGTCGCGG+TGG | + | chr7.4:44421148-44421167 | MS.gene78223:CDS | 65.0% | |
| ! | GGTCGCGGTGGTGGTGAGAA+TGG | + | chr7.4:44421160-44421179 | MS.gene78223:CDS | 65.0% |
| GAGATTCGCGGTCGCGGTGG+TGG | + | chr7.4:44421151-44421170 | MS.gene78223:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 44420167 | 44421312 | 44420167 | ID=MS.gene78223 |
| chr7.4 | mRNA | 44420167 | 44421312 | 44420167 | ID=MS.gene78223.t1;Parent=MS.gene78223 |
| chr7.4 | exon | 44420167 | 44421312 | 44420167 | ID=MS.gene78223.t1.exon1;Parent=MS.gene78223.t1 |
| chr7.4 | CDS | 44420167 | 44421312 | 44420167 | ID=cds.MS.gene78223.t1;Parent=MS.gene78223.t1 |
| Gene Sequence |
| Protein sequence |
