Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78306.t1 | XP_013452956.1 | 85.4 | 508 | 74 | 0 | 2 | 509 | 1 | 508 | 1.90E-112 | 416.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78306.t1 | Q84VY2 | 49.0 | 51 | 26 | 0 | 457 | 507 | 463 | 513 | 2.1e-06 | 55.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78306.t1 | A0A072UB28 | 85.4 | 508 | 74 | 0 | 2 | 509 | 1 | 508 | 1.4e-112 | 416.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049850 | MS.gene78306 | 0.806315 | 8.73E-50 | -1.69E-46 |
| MS.gene050959 | MS.gene78306 | 0.803991 | 2.68E-49 | -1.69E-46 |
| MS.gene051720 | MS.gene78306 | 0.807838 | 4.16E-50 | -1.69E-46 |
| MS.gene052133 | MS.gene78306 | 0.817867 | 2.64E-52 | -1.69E-46 |
| MS.gene052665 | MS.gene78306 | 0.813087 | 3.06E-51 | -1.69E-46 |
| MS.gene052896 | MS.gene78306 | 0.809061 | 2.28E-50 | -1.69E-46 |
| MS.gene055465 | MS.gene78306 | 0.844392 | 7.78E-59 | -1.69E-46 |
| MS.gene055466 | MS.gene78306 | 0.837216 | 5.93E-57 | -1.69E-46 |
| MS.gene055468 | MS.gene78306 | 0.832336 | 1.00E-55 | -1.69E-46 |
| MS.gene055469 | MS.gene78306 | 0.820745 | 5.83E-53 | -1.69E-46 |
| MS.gene057915 | MS.gene78306 | 0.811474 | 6.88E-51 | -1.69E-46 |
| MS.gene059725 | MS.gene78306 | 0.800485 | 1.41E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78306.t1 | MTR_6g082800 | 92.913 | 508 | 36 | 0 | 2 | 509 | 1 | 508 | 0.0 | 918 |
| MS.gene78306.t1 | MTR_8g032900 | 45.665 | 519 | 223 | 12 | 2 | 501 | 1 | 479 | 3.10e-109 | 333 |
| MS.gene78306.t1 | MTR_8g032930 | 44.007 | 559 | 208 | 15 | 2 | 509 | 1 | 505 | 7.51e-107 | 328 |
| MS.gene78306.t1 | MTR_3g093770 | 43.659 | 552 | 206 | 10 | 24 | 498 | 2 | 525 | 1.63e-106 | 328 |
| MS.gene78306.t1 | MTR_3g093750 | 45.842 | 469 | 195 | 11 | 2 | 448 | 1 | 432 | 2.80e-95 | 299 |
| MS.gene78306.t1 | MTR_5g075490 | 31.923 | 520 | 314 | 9 | 3 | 509 | 112 | 604 | 1.57e-59 | 207 |
| MS.gene78306.t1 | MTR_3g467610 | 27.043 | 514 | 279 | 11 | 21 | 509 | 94 | 536 | 8.46e-34 | 134 |
| MS.gene78306.t1 | MTR_3g093720 | 57.432 | 148 | 49 | 3 | 119 | 252 | 49 | 196 | 6.84e-33 | 127 |
| MS.gene78306.t1 | MTR_7g022780 | 36.726 | 226 | 114 | 3 | 233 | 458 | 3 | 199 | 1.32e-24 | 102 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78306.t1 | AT5G05180 | 34.448 | 299 | 157 | 5 | 237 | 507 | 115 | 402 | 4.03e-40 | 150 |
| MS.gene78306.t1 | AT5G05180 | 34.448 | 299 | 157 | 5 | 237 | 507 | 145 | 432 | 4.11e-40 | 150 |
| MS.gene78306.t1 | AT5G05180 | 44.560 | 193 | 79 | 2 | 332 | 500 | 209 | 397 | 1.33e-37 | 143 |
| MS.gene78306.t1 | AT5G58320 | 25.954 | 524 | 287 | 13 | 9 | 509 | 113 | 558 | 9.70e-22 | 99.0 |
| MS.gene78306.t1 | AT5G58320 | 25.954 | 524 | 287 | 13 | 9 | 509 | 113 | 558 | 9.70e-22 | 99.0 |
| MS.gene78306.t1 | AT2G30500 | 28.070 | 399 | 206 | 13 | 118 | 508 | 189 | 514 | 8.28e-21 | 95.9 |
| MS.gene78306.t1 | AT2G30500 | 28.070 | 399 | 206 | 13 | 118 | 508 | 189 | 514 | 8.28e-21 | 95.9 |
| MS.gene78306.t1 | AT2G30500 | 28.070 | 399 | 206 | 13 | 118 | 508 | 188 | 513 | 1.12e-20 | 95.5 |
| MS.gene78306.t1 | AT3G10880 | 55.435 | 92 | 40 | 1 | 397 | 487 | 188 | 279 | 1.78e-18 | 86.3 |
| MS.gene78306.t1 | AT3G10880 | 55.435 | 92 | 40 | 1 | 397 | 487 | 188 | 279 | 1.78e-18 | 86.3 |
| MS.gene78306.t1 | AT3G10880 | 55.435 | 92 | 40 | 1 | 397 | 487 | 226 | 317 | 3.33e-18 | 85.9 |
| MS.gene78306.t1 | AT3G10880 | 55.435 | 92 | 40 | 1 | 397 | 487 | 226 | 317 | 3.33e-18 | 85.9 |
| MS.gene78306.t1 | AT5G58320 | 25.356 | 351 | 220 | 9 | 9 | 339 | 70 | 398 | 8.31e-12 | 67.8 |
| MS.gene78306.t1 | AT5G58320 | 25.356 | 351 | 220 | 9 | 9 | 339 | 113 | 441 | 2.22e-11 | 66.6 |
| MS.gene78306.t1 | AT5G58320 | 25.356 | 351 | 220 | 9 | 9 | 339 | 113 | 441 | 2.22e-11 | 66.6 |
Find 92 sgRNAs with CRISPR-Local
Find 136 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCAATTGTTCCACCAAATT+TGG | 0.117641 | 6.4:+56087065 | None:intergenic |
| TTAACTTGTTTGCTAATAAA+TGG | 0.193584 | 6.4:+56086676 | None:intergenic |
| ATGGAGGGCACTGGTGATTT+TGG | 0.209159 | 6.4:-56087659 | MS.gene78306:CDS |
| GGAGACTCATGTTCCAAATT+TGG | 0.236051 | 6.4:-56087078 | MS.gene78306:CDS |
| TGAAAGCTTAAGTTTCAAAT+TGG | 0.275719 | 6.4:+56087247 | None:intergenic |
| AGGCGAAATCAGTTCTTTAA+AGG | 0.292177 | 6.4:-56086589 | MS.gene78306:CDS |
| GGATGAACTTGAGCATAAAA+AGG | 0.292373 | 6.4:-56087138 | MS.gene78306:CDS |
| GCGATGTGAAGCTGAAAATT+TGG | 0.295896 | 6.4:-56086652 | MS.gene78306:CDS |
| AGACGATCAAATAGAAAATA+TGG | 0.304491 | 6.4:-56086424 | MS.gene78306:CDS |
| TGGTCCTCAACCCGTCAATT+TGG | 0.305441 | 6.4:-56087561 | MS.gene78306:CDS |
| TCCAAATTTGGTGGAACAAT+TGG | 0.319106 | 6.4:-56087066 | MS.gene78306:CDS |
| TTAGAATGGCAGCTTGATTC+AGG | 0.324320 | 6.4:-56086912 | MS.gene78306:CDS |
| GAAAGAATTAGCACTGAATA+AGG | 0.325177 | 6.4:-56087159 | MS.gene78306:CDS |
| TGATTTGGAAGCTGTGAATA+AGG | 0.353331 | 6.4:-56086544 | MS.gene78306:CDS |
| TCATCAGAGAAGTAATGATT+TGG | 0.361754 | 6.4:-56086559 | MS.gene78306:CDS |
| TTCTGGTATGGAGTATAATA+TGG | 0.373850 | 6.4:+56087602 | None:intergenic |
| CACTCTCTTGTGCGCGAAGC+TGG | 0.374202 | 6.4:+56086388 | None:intergenic |
| ACTTCTGCAATCCCTGCTTC+TGG | 0.382177 | 6.4:+56087585 | None:intergenic |
| AAAGACAAAACCAGTTTGTT+GGG | 0.390775 | 6.4:-56087340 | MS.gene78306:CDS |
| ATTTATTAGCAAACAAGTTA+AGG | 0.393675 | 6.4:-56086674 | MS.gene78306:CDS |
| TTCCTCCCTCCCCAACAAAC+TGG | 0.416008 | 6.4:+56087330 | None:intergenic |
| TGCAATCCCTGCTTCTGGTA+TGG | 0.419352 | 6.4:+56087590 | None:intergenic |
| GAAAGACAAAACCAGTTTGT+TGG | 0.429529 | 6.4:-56087341 | MS.gene78306:CDS |
| TTCTTTCAGCTTACCTTGAG+TGG | 0.435903 | 6.4:+56087379 | None:intergenic |
| AAGAGAAGAGGGAGGCAATT+CGG | 0.438047 | 6.4:-56086251 | MS.gene78306:CDS |
| GACCTCAACACTGGAGGAAT+GGG | 0.440516 | 6.4:-56086709 | MS.gene78306:CDS |
| TGCCACGATTGATAAACTTA+AGG | 0.449422 | 6.4:-56086463 | MS.gene78306:CDS |
| AAATTTGCAAGTTGGAAGAC+AGG | 0.450922 | 6.4:-56086881 | MS.gene78306:CDS |
| AAGTCCAAATTGACGGGTTG+AGG | 0.461874 | 6.4:+56087557 | None:intergenic |
| TTGGACTTCTCTCCTAGCTC+AGG | 0.462175 | 6.4:-56087542 | MS.gene78306:CDS |
| GAAGAAGTTCATTAAAATTG+AGG | 0.462644 | 6.4:-56087285 | MS.gene78306:CDS |
| AAATTTGGTGGAACAATTGG+AGG | 0.473827 | 6.4:-56087063 | MS.gene78306:CDS |
| TGAAACTAACCTTGAAATTG+AGG | 0.476440 | 6.4:-56086838 | MS.gene78306:CDS |
| GCTGTATGCTACACAACAAA+TGG | 0.476775 | 6.4:-56086619 | MS.gene78306:CDS |
| AAGCAGGGATTGCAGAAGTC+TGG | 0.482361 | 6.4:-56087581 | MS.gene78306:CDS |
| TCTTGACAAAGAAAGTTCAT+TGG | 0.485728 | 6.4:-56087630 | MS.gene78306:CDS |
| TTTCCTGTGCCACTTCAAGC+TGG | 0.485925 | 6.4:+56086946 | None:intergenic |
| TAGCTCTGCCGCTTCTCAAA+AGG | 0.495879 | 6.4:-56087513 | MS.gene78306:CDS |
| CTTCATCATTTGATATCTTG+AGG | 0.496814 | 6.4:+56087027 | None:intergenic |
| TGACCTCAACACTGGAGGAA+TGG | 0.500142 | 6.4:-56086710 | MS.gene78306:CDS |
| CAATCTCAGATGGAGGGCAC+TGG | 0.502676 | 6.4:-56087668 | MS.gene78306:intron |
| CAGAAAGCAAATTTGCAAGT+TGG | 0.504504 | 6.4:-56086889 | MS.gene78306:CDS |
| GCAAGATTAAGAAAGGAACT+TGG | 0.511927 | 6.4:-56087002 | MS.gene78306:CDS |
| CGCGAAGCTGGATAAGCTCT+CGG | 0.518288 | 6.4:+56086400 | None:intergenic |
| CTCTGCCGCTTCTCAAAAGG+AGG | 0.519691 | 6.4:-56087510 | MS.gene78306:CDS |
| CAACTGAATGTAACTTTAGG+AGG | 0.520179 | 6.4:+56086140 | None:intergenic |
| TTATACTCCATACCAGAAGC+AGG | 0.522141 | 6.4:-56087597 | MS.gene78306:CDS |
| CTATAACGGTATGACTCCTA+TGG | 0.524652 | 6.4:+56086163 | None:intergenic |
| GAATATTGTGATCTCCGATC+GGG | 0.528397 | 6.4:-56086277 | MS.gene78306:CDS |
| AGCCTTAAGTTTATCAATCG+TGG | 0.528872 | 6.4:+56086461 | None:intergenic |
| TGAAGTTGCAAGATTAAGAA+AGG | 0.532063 | 6.4:-56087009 | MS.gene78306:CDS |
| CAAGATTAAGAAAGGAACTT+GGG | 0.540440 | 6.4:-56087001 | MS.gene78306:CDS |
| AGTTGGAAGACAGGATTACA+TGG | 0.541395 | 6.4:-56086872 | MS.gene78306:CDS |
| AAAATGTGACTAAATTAGAA+TGG | 0.541639 | 6.4:-56086926 | MS.gene78306:CDS |
| CAAAACCAGTTTGTTGGGGA+GGG | 0.542348 | 6.4:-56087335 | MS.gene78306:CDS |
| GGATCAAATGCATGATGTGC+AGG | 0.543842 | 6.4:-56086802 | MS.gene78306:CDS |
| AGGAGAGAAGTCCAAATTGA+CGG | 0.546664 | 6.4:+56087550 | None:intergenic |
| AGACCAGCTTGAAGTGGCAC+AGG | 0.547887 | 6.4:-56086949 | MS.gene78306:CDS |
| CCTCTTCTCTTCATCCCGAT+CGG | 0.548058 | 6.4:+56086263 | None:intergenic |
| AGAGTCAGTTTCAGAATCAG+AGG | 0.550792 | 6.4:+56087460 | None:intergenic |
| GAGCTAACACCACCTGAGCT+AGG | 0.552383 | 6.4:+56087530 | None:intergenic |
| AACCAGTTTGTTGGGGAGGG+AGG | 0.556196 | 6.4:-56087332 | MS.gene78306:CDS |
| GTAACTTTAGGAGGCTATAA+CGG | 0.556469 | 6.4:+56086149 | None:intergenic |
| AACACAATTGACCTCAACAC+TGG | 0.559176 | 6.4:-56086718 | MS.gene78306:CDS |
| GACTCATGTTCCAAATTTGG+TGG | 0.560411 | 6.4:-56087075 | MS.gene78306:CDS |
| GGAGAGAAGTCCAAATTGAC+GGG | 0.568151 | 6.4:+56087551 | None:intergenic |
| CAGTATTCACCGCCGTGCCA+TGG | 0.572576 | 6.4:+56087414 | None:intergenic |
| GACGATGAAGGAACCACTCA+AGG | 0.572786 | 6.4:-56087392 | MS.gene78306:CDS |
| TTTGGTGGAACAATTGGAGG+TGG | 0.574711 | 6.4:-56087060 | MS.gene78306:CDS |
| CTCCCATTCCTCCAGTGTTG+AGG | 0.578084 | 6.4:+56086707 | None:intergenic |
| ACAAAACCAGTTTGTTGGGG+AGG | 0.578682 | 6.4:-56087336 | MS.gene78306:CDS |
| CGATCGGGATGAAGAGAAGA+GGG | 0.583720 | 6.4:-56086262 | MS.gene78306:CDS |
| GACTTCTCTCCTAGCTCAGG+TGG | 0.584402 | 6.4:-56087539 | MS.gene78306:CDS |
| TCACTTGATCACTACAAGAG+TGG | 0.587379 | 6.4:-56086216 | MS.gene78306:CDS |
| TTTGTCTTTCGGTATCAGCA+AGG | 0.592493 | 6.4:+56087354 | None:intergenic |
| AGAATATTGTGATCTCCGAT+CGG | 0.598633 | 6.4:-56086278 | MS.gene78306:CDS |
| ATTGCAAGACCAGCTTGAAG+TGG | 0.606605 | 6.4:-56086955 | MS.gene78306:CDS |
| AAGACAAAACCAGTTTGTTG+GGG | 0.607800 | 6.4:-56087339 | MS.gene78306:CDS |
| TCCTCACAATCTCAGATGGA+GGG | 0.612527 | 6.4:-56087674 | MS.gene78306:intron |
| CCGATCGGGATGAAGAGAAG+AGG | 0.612539 | 6.4:-56086263 | MS.gene78306:CDS |
| GAATCAAAATGAGAAAAGTG+AGG | 0.626506 | 6.4:-56087201 | MS.gene78306:CDS |
| AATCAAAATGAGAAAAGTGA+GGG | 0.627000 | 6.4:-56087200 | MS.gene78306:CDS |
| GTCAGTTTCAGAATCAGAGG+AGG | 0.631262 | 6.4:+56087463 | None:intergenic |
| TGTAATTCATTACCATGGCA+CGG | 0.633012 | 6.4:-56087426 | MS.gene78306:CDS |
| ACACAACAAATGGTTATGCA+AGG | 0.640355 | 6.4:-56086609 | MS.gene78306:CDS |
| GCGGTGAATACTGACGATGA+AGG | 0.643067 | 6.4:-56087404 | MS.gene78306:CDS |
| TATACTCCATACCAGAAGCA+GGG | 0.646612 | 6.4:-56087596 | MS.gene78306:CDS |
| ACAATTGACCTCAACACTGG+AGG | 0.650713 | 6.4:-56086715 | MS.gene78306:CDS |
| AAGTCTGTAATTCATTACCA+TGG | 0.664113 | 6.4:-56087431 | MS.gene78306:CDS |
| TCGGGATGAAGAGAAGAGGG+AGG | 0.677476 | 6.4:-56086259 | MS.gene78306:CDS |
| TCTGCCGCTTCTCAAAAGGA+GGG | 0.690022 | 6.4:-56087509 | MS.gene78306:CDS |
| AATTCATTACCATGGCACGG+CGG | 0.798519 | 6.4:-56087423 | MS.gene78306:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATCAATAATAATTTATAAGT+CGG | - | chr6.4:56086216-56086235 | MS.gene78306:CDS | 10.0% |
| !! | AAAATGTGACTAAATTAGAA+TGG | - | chr6.4:56087469-56087488 | MS.gene78306:CDS | 20.0% |
| !! | ATTTATTAGCAAACAAGTTA+AGG | - | chr6.4:56087721-56087740 | MS.gene78306:intron | 20.0% |
| !! | CATGATACATTTATTCATTT+GGG | - | chr6.4:56086590-56086609 | MS.gene78306:CDS | 20.0% |
| !! | TCATGATACATTTATTCATT+TGG | - | chr6.4:56086589-56086608 | MS.gene78306:CDS | 20.0% |
| !!! | TTAACTTGTTTGCTAATAAA+TGG | + | chr6.4:56087722-56087741 | None:intergenic | 20.0% |
| !!! | TTGATATCTATTTTGATTGT+AGG | - | chr6.4:56086437-56086456 | MS.gene78306:CDS | 20.0% |
| ! | AATCAAAATGAGAAAAGTGA+GGG | - | chr6.4:56087195-56087214 | MS.gene78306:CDS | 25.0% |
| ! | AGACGATCAAATAGAAAATA+TGG | - | chr6.4:56087971-56087990 | MS.gene78306:intron | 25.0% |
| ! | CAAACATCAAATAATCAACA+AGG | + | chr6.4:56086630-56086649 | None:intergenic | 25.0% |
| ! | GAAGAAGTTCATTAAAATTG+AGG | - | chr6.4:56087110-56087129 | MS.gene78306:CDS | 25.0% |
| ! | TCATTTGTCAAAGCAAAATA+AGG | + | chr6.4:56086244-56086263 | None:intergenic | 25.0% |
| ! | TGAAAGCTTAAGTTTCAAAT+TGG | + | chr6.4:56087151-56087170 | None:intergenic | 25.0% |
| ! | TGATTATTTGATGTTTGGAA+TGG | - | chr6.4:56086633-56086652 | MS.gene78306:CDS | 25.0% |
| !! | CTTGTTGATTATTTGATGTT+TGG | - | chr6.4:56086628-56086647 | MS.gene78306:CDS | 25.0% |
| AAGGAGTAAATAAGTACTTG+AGG | - | chr6.4:56086362-56086381 | MS.gene78306:CDS | 30.0% | |
| AAGTCTGTAATTCATTACCA+TGG | - | chr6.4:56086964-56086983 | MS.gene78306:CDS | 30.0% | |
| AGTAGAAGAACTTGAAAAAG+AGG | - | chr6.4:56088085-56088104 | MS.gene78306:intron | 30.0% | |
| ATGTATCATGAACAATAGAC+TGG | + | chr6.4:56086580-56086599 | None:intergenic | 30.0% | |
| CAAGATTAAGAAAGGAACTT+GGG | - | chr6.4:56087394-56087413 | MS.gene78306:CDS | 30.0% | |
| CTTCATCATTTGATATCTTG+AGG | + | chr6.4:56087371-56087390 | None:intergenic | 30.0% | |
| GAATCAAAATGAGAAAAGTG+AGG | - | chr6.4:56087194-56087213 | MS.gene78306:CDS | 30.0% | |
| GATGAACTTGAGCATAAAAA+GGG | - | chr6.4:56087258-56087277 | MS.gene78306:CDS | 30.0% | |
| GTTGTATAAATTATGTCTCC+TGG | + | chr6.4:56086318-56086337 | None:intergenic | 30.0% | |
| TCATCAGAGAAGTAATGATT+TGG | - | chr6.4:56087836-56087855 | MS.gene78306:intron | 30.0% | |
| TCTTGACAAAGAAAGTTCAT+TGG | - | chr6.4:56086765-56086784 | MS.gene78306:CDS | 30.0% | |
| TGAAACTAACCTTGAAATTG+AGG | - | chr6.4:56087557-56087576 | MS.gene78306:CDS | 30.0% | |
| TGAAGTTGCAAGATTAAGAA+AGG | - | chr6.4:56087386-56087405 | MS.gene78306:CDS | 30.0% | |
| TTCTGGTATGGAGTATAATA+TGG | + | chr6.4:56086796-56086815 | None:intergenic | 30.0% | |
| TTTGCTTTGACAAATGAGTT+GGG | - | chr6.4:56086247-56086266 | MS.gene78306:CDS | 30.0% | |
| ! | AAAGACAAAACCAGTTTGTT+GGG | - | chr6.4:56087055-56087074 | MS.gene78306:CDS | 30.0% |
| ! | GAAAGAATTAGCACTGAATA+AGG | - | chr6.4:56087236-56087255 | MS.gene78306:CDS | 30.0% |
| ! | GAAATTCTTCAAGCTTTTAC+TGG | - | chr6.4:56088209-56088228 | MS.gene78306:intron | 30.0% |
| ! | TAAAGTGTCATCTGTTTCAA+AGG | - | chr6.4:56086343-56086362 | MS.gene78306:CDS | 30.0% |
| ! | TTTTGCTTTGACAAATGAGT+TGG | - | chr6.4:56086246-56086265 | MS.gene78306:CDS | 30.0% |
| !!! | AACAAACTGGTTTTGTCTTT+CGG | + | chr6.4:56087055-56087074 | None:intergenic | 30.0% |
| AATTGAGGTGCAAAAACTGA+AGG | - | chr6.4:56087572-56087591 | MS.gene78306:CDS | 35.0% | |
| ACACAACAAATGGTTATGCA+AGG | - | chr6.4:56087786-56087805 | MS.gene78306:intron | 35.0% | |
| AGAATATTGTGATCTCCGAT+CGG | - | chr6.4:56088117-56088136 | MS.gene78306:intron | 35.0% | |
| AGCCTTAAGTTTATCAATCG+TGG | + | chr6.4:56087937-56087956 | None:intergenic | 35.0% | |
| AGGCGAAATCAGTTCTTTAA+AGG | - | chr6.4:56087806-56087825 | MS.gene78306:intron | 35.0% | |
| ATAAGTACTCTGCATTACAG+GGG | + | chr6.4:56086686-56086705 | None:intergenic | 35.0% | |
| CAGAAAGCAAATTTGCAAGT+TGG | - | chr6.4:56087506-56087525 | MS.gene78306:CDS | 35.0% | |
| GAAAGACAAAACCAGTTTGT+TGG | - | chr6.4:56087054-56087073 | MS.gene78306:CDS | 35.0% | |
| GATAAGTACTCTGCATTACA+GGG | + | chr6.4:56086687-56086706 | None:intergenic | 35.0% | |
| GCAAGATTAAGAAAGGAACT+TGG | - | chr6.4:56087393-56087412 | MS.gene78306:CDS | 35.0% | |
| GGATGAACTTGAGCATAAAA+AGG | - | chr6.4:56087257-56087276 | MS.gene78306:CDS | 35.0% | |
| TCAAAAGATGCAATCTTTCC+AGG | - | chr6.4:56086297-56086316 | MS.gene78306:CDS | 35.0% | |
| TCCAATTGTTCCACCAAATT+TGG | + | chr6.4:56087333-56087352 | None:intergenic | 35.0% | |
| TGATAAGTACTCTGCATTAC+AGG | + | chr6.4:56086688-56086707 | None:intergenic | 35.0% | |
| TGCCACGATTGATAAACTTA+AGG | - | chr6.4:56087932-56087951 | MS.gene78306:intron | 35.0% | |
| TGTAATTCATTACCATGGCA+CGG | - | chr6.4:56086969-56086988 | MS.gene78306:CDS | 35.0% | |
| TTGCTTTGACAAATGAGTTG+GGG | - | chr6.4:56086248-56086267 | MS.gene78306:CDS | 35.0% | |
| TTTATCCTCACAATCTCAGA+TGG | - | chr6.4:56086717-56086736 | MS.gene78306:CDS | 35.0% | |
| ! | AAATTTGCAAGTTGGAAGAC+AGG | - | chr6.4:56087514-56087533 | MS.gene78306:CDS | 35.0% |
| ! | AAATTTGGTGGAACAATTGG+AGG | - | chr6.4:56087332-56087351 | MS.gene78306:CDS | 35.0% |
| ! | ATGGAAATGCTGTTCCTTTT+AGG | - | chr6.4:56086652-56086671 | MS.gene78306:CDS | 35.0% |
| ! | GAGATTTAAAGTGTCTATGC+TGG | - | chr6.4:56086403-56086422 | MS.gene78306:CDS | 35.0% |
| ! | GTTTTTGCACCTCAATTTCA+AGG | + | chr6.4:56087569-56087588 | None:intergenic | 35.0% |
| ! | TCCAAATTTGGTGGAACAAT+TGG | - | chr6.4:56087329-56087348 | MS.gene78306:CDS | 35.0% |
| ! | TGATTTGGAAGCTGTGAATA+AGG | - | chr6.4:56087851-56087870 | MS.gene78306:intron | 35.0% |
| !! | AAGACAAAACCAGTTTGTTG+GGG | - | chr6.4:56087056-56087075 | MS.gene78306:CDS | 35.0% |
| !! | CTGTGAATAAGGATTTTGAC+AGG | - | chr6.4:56087862-56087881 | MS.gene78306:intron | 35.0% |
| AACACAATTGACCTCAACAC+TGG | - | chr6.4:56087677-56087696 | MS.gene78306:intron | 40.0% | |
| ACTGTCACCATCTTACTGAA+TGG | - | chr6.4:56086545-56086564 | MS.gene78306:CDS | 40.0% | |
| ACTTGAGCATAAAAAGGGAC+AGG | - | chr6.4:56087263-56087282 | MS.gene78306:CDS | 40.0% | |
| AGAGTCAGTTTCAGAATCAG+AGG | + | chr6.4:56086938-56086957 | None:intergenic | 40.0% | |
| AGGAGAGAAGTCCAAATTGA+CGG | + | chr6.4:56086848-56086867 | None:intergenic | 40.0% | |
| AGTTGGAAGACAGGATTACA+TGG | - | chr6.4:56087523-56087542 | MS.gene78306:CDS | 40.0% | |
| ATTCAGTAAGATGGTGACAG+TGG | + | chr6.4:56086546-56086565 | None:intergenic | 40.0% | |
| CTATAACGGTATGACTCCTA+TGG | + | chr6.4:56088235-56088254 | None:intergenic | 40.0% | |
| GAATATTGTGATCTCCGATC+GGG | - | chr6.4:56088118-56088137 | MS.gene78306:intron | 40.0% | |
| GACTCATGTTCCAAATTTGG+TGG | - | chr6.4:56087320-56087339 | MS.gene78306:CDS | 40.0% | |
| GCAAAAGCAAAAAGCTGAGT+TGG | - | chr6.4:56087296-56087315 | MS.gene78306:CDS | 40.0% | |
| GCGATGTGAAGCTGAAAATT+TGG | - | chr6.4:56087743-56087762 | MS.gene78306:intron | 40.0% | |
| GCTGTATGCTACACAACAAA+TGG | - | chr6.4:56087776-56087795 | MS.gene78306:intron | 40.0% | |
| GGAGACTCATGTTCCAAATT+TGG | - | chr6.4:56087317-56087336 | MS.gene78306:CDS | 40.0% | |
| TAAGTACTCTGCATTACAGG+GGG | + | chr6.4:56086685-56086704 | None:intergenic | 40.0% | |
| TAAGTGTCTGCAACTGACAT+AGG | + | chr6.4:56086180-56086199 | None:intergenic | 40.0% | |
| TATACTCCATACCAGAAGCA+GGG | - | chr6.4:56086799-56086818 | MS.gene78306:CDS | 40.0% | |
| TCACTTGATCACTACAAGAG+TGG | - | chr6.4:56088179-56088198 | MS.gene78306:intron | 40.0% | |
| TGCAGACACTTACTCTCATA+GGG | - | chr6.4:56086188-56086207 | MS.gene78306:CDS | 40.0% | |
| TTAGAATGGCAGCTTGATTC+AGG | - | chr6.4:56087483-56087502 | MS.gene78306:CDS | 40.0% | |
| TTATACTCCATACCAGAAGC+AGG | - | chr6.4:56086798-56086817 | MS.gene78306:CDS | 40.0% | |
| TTCTTTCAGCTTACCTTGAG+TGG | + | chr6.4:56087019-56087038 | None:intergenic | 40.0% | |
| TTGCAGACACTTACTCTCAT+AGG | - | chr6.4:56086187-56086206 | MS.gene78306:CDS | 40.0% | |
| TTTGTCTTTCGGTATCAGCA+AGG | + | chr6.4:56087044-56087063 | None:intergenic | 40.0% | |
| ! | TTCAAGCTTTTACTGGCCAT+AGG | - | chr6.4:56088216-56088235 | MS.gene78306:intron | 40.0% |
| AAGAGAAGAGGGAGGCAATT+CGG | - | chr6.4:56088144-56088163 | MS.gene78306:intron | 45.0% | |
| AAGTACTCTGCATTACAGGG+GGG | + | chr6.4:56086684-56086703 | None:intergenic | 45.0% | |
| AATTCATTACCATGGCACGG+CGG | - | chr6.4:56086972-56086991 | MS.gene78306:CDS | 45.0% | |
| ACAATTGACCTCAACACTGG+AGG | - | chr6.4:56087680-56087699 | MS.gene78306:intron | 45.0% | |
| ATCCTCACAATCTCAGATGG+AGG | - | chr6.4:56086720-56086739 | MS.gene78306:CDS | 45.0% | |
| ATTGCAAGACCAGCTTGAAG+TGG | - | chr6.4:56087440-56087459 | MS.gene78306:CDS | 45.0% | |
| CAGGGGGGAAAAATCCTAAA+AGG | + | chr6.4:56086669-56086688 | None:intergenic | 45.0% | |
| GGAGAGAAGTCCAAATTGAC+GGG | + | chr6.4:56086847-56086866 | None:intergenic | 45.0% | |
| GGATCAAATGCATGATGTGC+AGG | - | chr6.4:56087593-56087612 | MS.gene78306:CDS | 45.0% | |
| GTCAGTTTCAGAATCAGAGG+AGG | + | chr6.4:56086935-56086954 | None:intergenic | 45.0% | |
| TCCTCACAATCTCAGATGGA+GGG | - | chr6.4:56086721-56086740 | MS.gene78306:CDS | 45.0% | |
| TTTGGTGGAACAATTGGAGG+TGG | - | chr6.4:56087335-56087354 | MS.gene78306:CDS | 45.0% | |
| !! | AAGTCCAAATTGACGGGTTG+AGG | + | chr6.4:56086841-56086860 | None:intergenic | 45.0% |
| !! | ACAAAACCAGTTTGTTGGGG+AGG | - | chr6.4:56087059-56087078 | MS.gene78306:CDS | 45.0% |
| !! | AGAACCCTCCTTTTGAGAAG+CGG | + | chr6.4:56086893-56086912 | None:intergenic | 45.0% |
| !! | CAAAACCAGTTTGTTGGGGA+GGG | - | chr6.4:56087060-56087079 | MS.gene78306:CDS | 45.0% |
| AAGCAGGGATTGCAGAAGTC+TGG | - | chr6.4:56086814-56086833 | MS.gene78306:CDS | 50.0% | |
| ACTTCTGCAATCCCTGCTTC+TGG | + | chr6.4:56086813-56086832 | None:intergenic | 50.0% | |
| CCTCTTCTCTTCATCCCGAT+CGG | + | chr6.4:56088135-56088154 | None:intergenic | 50.0% | |
| CGATCGGGATGAAGAGAAGA+GGG | - | chr6.4:56088133-56088152 | MS.gene78306:intron | 50.0% | |
| CGCAGAGCCATTCAGTAAGA+TGG | + | chr6.4:56086555-56086574 | None:intergenic | 50.0% | |
| GACCTCAACACTGGAGGAAT+GGG | - | chr6.4:56087686-56087705 | MS.gene78306:intron | 50.0% | |
| GACGATGAAGGAACCACTCA+AGG | - | chr6.4:56087003-56087022 | MS.gene78306:CDS | 50.0% | |
| GCATAAAAAGGGACAGGTGC+TGG | - | chr6.4:56087269-56087288 | MS.gene78306:CDS | 50.0% | |
| GCGGTGAATACTGACGATGA+AGG | - | chr6.4:56086991-56087010 | MS.gene78306:CDS | 50.0% | |
| TGACCTCAACACTGGAGGAA+TGG | - | chr6.4:56087685-56087704 | MS.gene78306:intron | 50.0% | |
| TGCAATCCCTGCTTCTGGTA+TGG | + | chr6.4:56086808-56086827 | None:intergenic | 50.0% | |
| TGGTCCTCAACCCGTCAATT+TGG | - | chr6.4:56086834-56086853 | MS.gene78306:CDS | 50.0% | |
| TTGGACTTCTCTCCTAGCTC+AGG | - | chr6.4:56086853-56086872 | MS.gene78306:CDS | 50.0% | |
| ! | TAGCTCTGCCGCTTCTCAAA+AGG | - | chr6.4:56086882-56086901 | MS.gene78306:CDS | 50.0% |
| ! | TCTGCCGCTTCTCAAAAGGA+GGG | - | chr6.4:56086886-56086905 | MS.gene78306:CDS | 50.0% |
| !! | TTTCCTGTGCCACTTCAAGC+TGG | + | chr6.4:56087452-56087471 | None:intergenic | 50.0% |
| !!! | ATGGAGGGCACTGGTGATTT+TGG | - | chr6.4:56086736-56086755 | MS.gene78306:CDS | 50.0% |
| AGACCAGCTTGAAGTGGCAC+AGG | - | chr6.4:56087446-56087465 | MS.gene78306:CDS | 55.0% | |
| CCGATCGGGATGAAGAGAAG+AGG | - | chr6.4:56088132-56088151 | MS.gene78306:intron | 55.0% | |
| CGCGAAGCTGGATAAGCTCT+CGG | + | chr6.4:56087998-56088017 | None:intergenic | 55.0% | |
| CTCCCATTCCTCCAGTGTTG+AGG | + | chr6.4:56087691-56087710 | None:intergenic | 55.0% | |
| GACTTCTCTCCTAGCTCAGG+TGG | - | chr6.4:56086856-56086875 | MS.gene78306:CDS | 55.0% | |
| GAGCTAACACCACCTGAGCT+AGG | + | chr6.4:56086868-56086887 | None:intergenic | 55.0% | |
| TCGGGATGAAGAGAAGAGGG+AGG | - | chr6.4:56088136-56088155 | MS.gene78306:intron | 55.0% | |
| TTCCTCCCTCCCCAACAAAC+TGG | + | chr6.4:56087068-56087087 | None:intergenic | 55.0% | |
| ! | CAATCTCAGATGGAGGGCAC+TGG | - | chr6.4:56086727-56086746 | MS.gene78306:CDS | 55.0% |
| ! | CTCTGCCGCTTCTCAAAAGG+AGG | - | chr6.4:56086885-56086904 | MS.gene78306:CDS | 55.0% |
| ! | GCCCTCCATCTGAGATTGTG+AGG | + | chr6.4:56086725-56086744 | None:intergenic | 55.0% |
| !! | AACCAGTTTGTTGGGGAGGG+AGG | - | chr6.4:56087063-56087082 | MS.gene78306:CDS | 55.0% |
| !!! | GGCACTGGTGATTTTGGCGA+AGG | - | chr6.4:56086742-56086761 | MS.gene78306:CDS | 55.0% |
| CACTCTCTTGTGCGCGAAGC+TGG | + | chr6.4:56088010-56088029 | None:intergenic | 60.0% | |
| CAGTATTCACCGCCGTGCCA+TGG | + | chr6.4:56086984-56087003 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.4 | gene | 56086155 | 56088262 | 56086155 | ID=MS.gene78306 |
| chr6.4 | mRNA | 56086155 | 56088262 | 56086155 | ID=MS.gene78306.t1;Parent=MS.gene78306 |
| chr6.4 | exon | 56088260 | 56088262 | 56088260 | ID=MS.gene78306.t1.exon1;Parent=MS.gene78306.t1 |
| chr6.4 | CDS | 56088260 | 56088262 | 56088260 | ID=cds.MS.gene78306.t1;Parent=MS.gene78306.t1 |
| chr6.4 | exon | 56086155 | 56087681 | 56086155 | ID=MS.gene78306.t1.exon2;Parent=MS.gene78306.t1 |
| chr6.4 | CDS | 56086155 | 56087681 | 56086155 | ID=cds.MS.gene78306.t1;Parent=MS.gene78306.t1 |
| Gene Sequence |
| Protein sequence |
