AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene78391

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene78391.t1 MTR_2g097950 96.964 494 15 0 1 494 13 506 0.0 984
MS.gene78391.t1 MTR_2g097950 90.081 494 14 1 1 494 13 471 0.0 896
MS.gene78391.t1 MTR_4g065040 71.855 469 131 1 5 472 1 469 0.0 672
MS.gene78391.t1 MTR_8g076480 56.458 480 202 2 8 483 9 485 0.0 578
MS.gene78391.t1 MTR_1g029840 47.182 479 250 1 3 481 11 486 4.16e-162 468
MS.gene78391.t1 MTR_1g029840 47.390 479 249 1 3 481 11 486 2.26e-160 464
MS.gene78391.t1 MTR_8g094600 47.447 470 244 1 12 481 73 539 6.79e-158 459
MS.gene78391.t1 MTR_3g088150 45.929 479 256 1 3 481 13 488 2.04e-157 456
MS.gene78391.t1 MTR_1222s0010 34.309 376 234 7 12 384 9 374 2.48e-65 224
MS.gene78391.t1 MTR_1314s0010 31.884 345 216 5 108 441 1 337 1.00e-56 192
MS.gene78391.t1 MTR_2g034160 26.966 445 294 10 29 453 102 535 2.49e-40 153
MS.gene78391.t1 MTR_2g067660 28.775 351 238 9 104 448 178 522 1.52e-39 150
MS.gene78391.t1 MTR_3g078550 27.521 476 301 15 1 454 17 470 3.15e-33 132
MS.gene78391.t1 MTR_3g078550 27.521 476 301 15 1 454 47 500 6.02e-33 131
MS.gene78391.t1 MTR_3g078490 26.598 485 294 13 1 454 77 530 1.63e-32 130
MS.gene78391.t1 MTR_4g106510 28.477 453 291 14 23 454 60 500 4.24e-32 129
MS.gene78391.t1 MTR_4g107040 27.253 455 298 14 2 440 97 534 9.78e-30 122
MS.gene78391.t1 MTR_6g086300 29.817 436 260 18 39 456 94 501 1.89e-29 121
MS.gene78391.t1 MTR_6g086300 29.817 436 260 18 39 456 94 501 1.89e-29 121
MS.gene78391.t1 MTR_8g064170 28.285 449 293 15 6 440 98 531 1.79e-28 119
MS.gene78391.t1 MTR_8g083530 26.439 469 309 13 2 456 56 502 8.43e-28 116
MS.gene78391.t1 MTR_4g020720 46.923 130 63 3 175 301 116 242 2.00e-27 111
MS.gene78391.t1 MTR_3g078170 26.562 448 302 13 6 440 99 532 4.57e-27 114
MS.gene78391.t1 MTR_6g086340 27.962 422 271 16 39 445 92 495 8.32e-26 110
MS.gene78391.t1 MTR_4g131180 26.966 445 281 15 2 423 44 467 4.05e-25 108
MS.gene78391.t1 MTR_1g014320 28.923 325 207 10 108 423 158 467 3.55e-24 105
MS.gene78391.t1 MTR_4g131180 26.824 425 268 14 2 403 44 448 4.44e-23 102
MS.gene78391.t1 MTR_8g064170 27.455 448 266 17 6 440 98 499 1.02e-21 98.6
MS.gene78391.t1 MTR_3g078170 26.287 369 247 12 6 361 99 455 1.94e-19 91.3
MS.gene78391.t1 MTR_8g083520 26.230 427 239 17 39 445 6 376 7.34e-19 88.6
MS.gene78391.t1 MTR_2g042330 25.779 353 241 9 105 447 152 493 1.36e-18 89.0
MS.gene78391.t1 MTR_8g083520 25.917 436 247 17 30 445 77 456 1.38e-18 88.6
MS.gene78391.t1 MTR_2g009750 27.097 310 204 10 105 401 147 447 1.80e-17 85.5
MS.gene78391.t1 MTR_2g009750 27.097 310 203 10 105 401 147 446 2.61e-17 85.1
MS.gene78391.t1 MTR_2g009750 27.097 310 203 10 105 401 146 445 2.67e-17 85.1
MS.gene78391.t1 MTR_4g093170 26.774 310 205 10 105 401 174 474 4.62e-17 84.3
MS.gene78391.t1 MTR_4g020710 52.778 72 33 1 295 365 14 85 5.71e-17 77.8
MS.gene78391.t1 MTR_8g083530 29.779 272 167 9 2 262 56 314 1.62e-15 78.6
MS.gene78391.t1 MTR_3g078170 26.100 341 227 12 6 333 99 427 2.37e-15 78.6
MS.gene78391.t1 MTR_3g078170 26.100 341 227 12 6 333 99 427 2.47e-15 78.6
MS.gene78391.t1 MTR_3g078490 30.453 243 129 6 1 223 47 269 3.99e-15 77.4
MS.gene78391.t1 MTR_1690s0010 28.500 200 133 8 108 302 146 340 3.75e-12 68.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene78391.t1 AT4G36250 52.795 483 228 0 1 483 1 483 0.0 564
MS.gene78391.t1 AT1G44170 48.195 471 241 1 12 482 16 483 3.98e-162 468
MS.gene78391.t1 AT1G44170 48.195 471 241 1 12 482 16 483 3.98e-162 468
MS.gene78391.t1 AT4G34240 49.469 471 235 1 12 482 64 531 1.10e-157 459
MS.gene78391.t1 AT4G34240 49.469 471 235 1 12 482 79 546 2.28e-157 458
MS.gene78391.t1 AT1G44170 49.761 418 207 1 65 482 6 420 8.35e-149 432
MS.gene78391.t1 AT4G34240 51.478 406 194 1 77 482 2 404 1.83e-141 413
MS.gene78391.t1 AT4G34240 49.206 315 157 1 12 326 79 390 9.84e-97 298
MS.gene78391.t1 AT3G66658 27.406 478 312 11 23 471 96 567 5.52e-47 172
MS.gene78391.t1 AT3G66658 27.477 444 296 9 23 446 96 533 4.05e-46 169
MS.gene78391.t1 AT1G79440 30.460 348 222 9 104 441 184 521 1.15e-40 153
MS.gene78391.t1 AT1G74920 29.452 438 285 14 30 454 69 495 2.02e-35 138
MS.gene78391.t1 AT1G74920 29.452 438 285 14 30 454 74 500 2.83e-35 138
MS.gene78391.t1 AT3G48170 26.526 475 304 16 6 454 45 500 1.67e-30 124
MS.gene78391.t1 AT1G23800 27.434 452 301 14 2 440 87 524 3.51e-30 124
MS.gene78391.t1 AT3G48000 27.212 452 302 13 2 440 91 528 4.52e-28 117
MS.gene78391.t1 AT3G24503 27.869 427 274 18 30 440 83 491 1.78e-25 109
MS.gene78391.t1 AT2G24270 28.615 325 208 10 108 423 198 507 2.27e-23 103
MS.gene78391.t1 AT2G24270 28.615 325 208 10 108 423 158 467 4.06e-23 102
MS.gene78391.t1 AT2G24270 28.615 325 208 10 108 423 158 467 4.06e-23 102
MS.gene78391.t1 AT2G24270 28.615 325 208 10 108 423 158 467 4.38e-23 102
MS.gene78391.t1 AT1G54100 26.286 350 237 9 108 447 154 492 3.94e-18 87.4
MS.gene78391.t1 AT1G54100 26.286 350 237 9 108 447 154 492 3.94e-18 87.4
MS.gene78391.t1 AT1G23800 28.213 319 203 13 2 307 87 392 2.63e-15 78.2
MS.gene78391.t1 AT2G14170 23.288 438 298 12 29 443 58 480 3.23e-12 68.9
MS.gene78391.t1 AT2G14170 23.288 438 298 12 29 443 167 589 4.07e-12 68.9
MS.gene78391.t1 AT2G14170 23.919 393 272 10 29 404 167 549 2.41e-11 66.6

Find 106 sgRNAs with CRISPR-Local

Find 255 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGAAATCTTATGTAGATTTA+TGG 0.118638 2.3:-5261568 MS.gene78391:intron
CACTGTTCTACCAAATTATT+TGG 0.132543 2.3:-5263910 MS.gene78391:CDS
CACTTGAAAGTAGTGCTATT+TGG 0.163353 2.3:+5264202 None:intergenic
TTCTCCTAGCCACAGCTTTA+TGG 0.164740 2.3:+5260580 None:intergenic
AAGGCCCTCAAGAAGGATTT+AGG 0.176467 2.3:-5264601 MS.gene78391:CDS
AGGAGTTGCTCTCCAATTTC+TGG 0.180506 2.3:+5263855 None:intergenic
CCATTATTGTCCAAATAATT+TGG 0.194174 2.3:+5263900 None:intergenic
TTGATTCACTTTCAACTTCT+TGG 0.229573 2.3:-5263603 MS.gene78391:CDS
TACTTATCTTACAGTGATAA+TGG 0.233953 2.3:+5261473 None:intergenic
ACTTGAAAGTAGTGCTATTT+GGG 0.262171 2.3:+5264203 None:intergenic
CCAAATTATTTGGACAATAA+TGG 0.270029 2.3:-5263900 MS.gene78391:CDS
TATGGAACCAACAATATTAC+TGG 0.285040 2.3:-5261550 MS.gene78391:CDS
GCATAAATTGCTAGAGGTTT+AGG 0.288414 2.3:+5261288 None:intergenic
GATGGCTGTGAAACGAATTT+TGG 0.298929 2.3:-5263090 MS.gene78391:CDS
GTGTCCTTGGAGCCATTAAT+TGG 0.298989 2.3:-5264005 MS.gene78391:CDS
ATTGAAGGTGGACCAGAAAT+TGG 0.299642 2.3:-5263867 MS.gene78391:CDS
GTTAAAGAAATCCATTGATT+TGG 0.305202 2.3:-5264426 MS.gene78391:CDS
AAGAACATGAGAAAGTATTA+TGG 0.305368 2.3:-5264712 MS.gene78391:CDS
GCAGCTATGGCTCCAATTAA+TGG 0.306017 2.3:+5263993 None:intergenic
ACTCCTATAACTCTGGAGTT+AGG 0.328012 2.3:-5263646 MS.gene78391:CDS
GAGGAGACTCTTGATTCTAT+TGG 0.336102 2.3:+5262797 None:intergenic
TGTAAGCTTCTTCAAGTAGT+TGG 0.339552 2.3:+5260505 None:intergenic
TGATTCACTTTCAACTTCTT+GGG 0.343615 2.3:-5263602 MS.gene78391:CDS
TGGAGAGAATCACAACTAAA+AGG 0.351972 2.3:-5264664 MS.gene78391:CDS
GGAGTTCTCAGTGGAAGCTT+TGG 0.372513 2.3:-5264746 MS.gene78391:CDS
CTCCTATAACTCTGGAGTTA+GGG 0.372962 2.3:-5263645 MS.gene78391:CDS
TTCAAAACGTTCATTATATG+AGG 0.382788 2.3:-5260436 MS.gene78391:CDS
ACCACCGATTCTTTGACATT+AGG 0.390930 2.3:+5262768 None:intergenic
AGGCCCTCAAGAAGGATTTA+GGG 0.400687 2.3:-5264600 MS.gene78391:CDS
GGACTTTATTGCCAAATCAA+TGG 0.403173 2.3:+5264415 None:intergenic
AGAACATGAGAAAGTATTAT+GGG 0.405722 2.3:-5264711 MS.gene78391:CDS
ACTTATCTTACAGTGATAAT+GGG 0.411701 2.3:+5261474 None:intergenic
GGAGTTGGTGAATGTGGATT+TGG 0.413532 2.3:-5260642 MS.gene78391:CDS
ACCATCCCATTTGGAGGAGT+TGG 0.443845 2.3:-5260657 MS.gene78391:CDS
ATAGCGGATACCATCCCATT+TGG 0.449228 2.3:-5260666 MS.gene78391:CDS
AACAATCCTTGCAATGCTGT+TGG 0.454731 2.3:+5262833 None:intergenic
ATTTAATGATGCAATTCTAC+AGG 0.457393 2.3:-5261202 MS.gene78391:intron
GAAATTGTTGCTGAGCCTCT+TGG 0.457989 2.3:-5264177 MS.gene78391:CDS
TTTGGTTCAGGTTTCCTCCA+TGG 0.459950 2.3:-5260542 MS.gene78391:CDS
CTTCCCTAAATCCTTCTTGA+GGG 0.460635 2.3:+5264597 None:intergenic
CATTCACCAACTCCTCCAAA+TGG 0.461138 2.3:+5260651 None:intergenic
ATCATGACAGAAGAAATCTT+TGG 0.467373 2.3:-5261507 MS.gene78391:CDS
CAAAACACTGCAGAGAAGAT+TGG 0.468898 2.3:-5261253 MS.gene78391:CDS
GCATCTCACTCCTATAACTC+TGG 0.477082 2.3:-5263653 MS.gene78391:CDS
TTGGTATCTGAAACATCATC+CGG 0.480961 2.3:-5261234 MS.gene78391:CDS
TGGAACTTGTTAAGATTCCA+TGG 0.484735 2.3:+5260525 None:intergenic
GCTTACAATTTAAACTACAT+TGG 0.487149 2.3:-5260489 MS.gene78391:CDS
TAGGTGGAGTTAATGAAGGA+AGG 0.488749 2.3:-5262891 MS.gene78391:CDS
GCAAAGTATGGGGCTTGTGC+AGG 0.494839 2.3:-5263065 MS.gene78391:CDS
TGCAACATTTCCAGCAGCTA+TGG 0.497942 2.3:+5263980 None:intergenic
AATTCCATGATGAGATTATG+AGG 0.500503 2.3:+5264148 None:intergenic
AAAATGGATGGCTGGTAAAG+AGG 0.500707 2.3:-5264387 MS.gene78391:intron
TCTTTAGGTGGAGTTAATGA+AGG 0.502645 2.3:-5262895 MS.gene78391:intron
AATGGCATTAAGATCATTGA+AGG 0.505160 2.3:-5263882 MS.gene78391:CDS
GCTTCCCTAAATCCTTCTTG+AGG 0.505953 2.3:+5264596 None:intergenic
AGGTGGAGTTAATGAAGGAA+GGG 0.506548 2.3:-5262890 MS.gene78391:CDS
TGTGGATTTGGCAAGTATCA+TGG 0.509305 2.3:-5260630 MS.gene78391:CDS
CTAGAAGAGAAGAAGAAGTA+GGG 0.517439 2.3:+5263934 None:intergenic
ATGAGAAAGTATTATGGGAG+TGG 0.517718 2.3:-5264706 MS.gene78391:CDS
GCTAGAAGAGAAGAAGAAGT+AGG 0.519054 2.3:+5263933 None:intergenic
TGAACCTAATGTCAAAGAAT+CGG 0.526059 2.3:-5262772 MS.gene78391:CDS
GAAAGTGAATCAACCAGTGC+TGG 0.531970 2.3:+5263613 None:intergenic
GATTGTTATGTCTGCAGCAG+TGG 0.533250 2.3:-5263677 MS.gene78391:CDS
ATTCACCAACTCCTCCAAAT+GGG 0.535804 2.3:+5260652 None:intergenic
TTAATTGGAGCCATAGCTGC+TGG 0.536986 2.3:-5263990 MS.gene78391:CDS
GTGGATTTGGCAAGTATCAT+GGG 0.538798 2.3:-5260629 MS.gene78391:CDS
ATCATTAAATACAATGCTCC+CGG 0.543496 2.3:+5261215 None:intergenic
TTTGGAGGAGTTGGTGAATG+TGG 0.544032 2.3:-5260648 MS.gene78391:CDS
AAATGAGGAAGAAATCTTGA+AGG 0.544513 2.3:-5264620 MS.gene78391:CDS
TCCTATAACTCTGGAGTTAG+GGG 0.551937 2.3:-5263644 MS.gene78391:CDS
TAACTTTGTCAAAGAAAATG+AGG 0.553225 2.3:-5264635 MS.gene78391:CDS
AATCTTGAAGGCCCTCAAGA+AGG 0.558764 2.3:-5264608 MS.gene78391:CDS
GCGGATACCATCCCATTTGG+AGG 0.558921 2.3:-5260663 MS.gene78391:CDS
TACAGTGATAATGGGAAGCA+CGG 0.561570 2.3:+5261482 None:intergenic
GTCATGATTGCTGATTCAAG+TGG 0.562929 2.3:+5261522 None:intergenic
AGTCCTAAAACCTTCAGAGT+TGG 0.563574 2.3:-5263958 MS.gene78391:CDS
GAAGTAGGGGCCAACTCTGA+AGG 0.570056 2.3:+5263948 None:intergenic
TAGTCCTCATAATCTCATCA+TGG 0.574613 2.3:-5264152 MS.gene78391:CDS
GGCTCCAATTAATGGCTCCA+AGG 0.575676 2.3:+5264001 None:intergenic
GTGAAAGCATAAATTGCTAG+AGG 0.575786 2.3:+5261282 None:intergenic
ATATTAGGAAGTGCACGAGT+GGG 0.582326 2.3:-5263703 MS.gene78391:intron
TTTAGGGAAGCATCATGTTG+AGG 0.599307 2.3:-5264584 MS.gene78391:CDS
TATATTAGGAAGTGCACGAG+TGG 0.599974 2.3:-5263704 MS.gene78391:intron
AAAGAGCTTCAGTTCCACAT+TGG 0.608853 2.3:-5263006 MS.gene78391:intron
ACCAACTCCTCCAAATGGGA+TGG 0.608963 2.3:+5260656 None:intergenic
TCATGATTGCTGATTCAAGT+GGG 0.615088 2.3:+5261523 None:intergenic
GGCATTAAGATCATTGAAGG+TGG 0.617998 2.3:-5263879 MS.gene78391:CDS
ACCTAATGTCAAAGAATCGG+TGG 0.620390 2.3:-5262769 MS.gene78391:CDS
TAGAAGAGAAGAAGAAGTAG+GGG 0.625377 2.3:+5263935 None:intergenic
TAGGAAGTGCACGAGTGGGG+AGG 0.625912 2.3:-5263699 MS.gene78391:CDS
GTCACCATAAAGCTGTGGCT+AGG 0.633443 2.3:-5260584 MS.gene78391:CDS
ACAGTGATAATGGGAAGCAC+GGG 0.640005 2.3:+5261483 None:intergenic
TGGTATCTGAAACATCATCC+GGG 0.645652 2.3:-5261233 MS.gene78391:CDS
TATTAGGAAGTGCACGAGTG+GGG 0.646738 2.3:-5263702 MS.gene78391:intron
CAGGTGGAGAAGATTGAAGA+CGG 0.650633 2.3:-5261333 MS.gene78391:CDS
TTCAACTTCTTGGGACAGAG+AGG 0.650826 2.3:-5263593 MS.gene78391:intron
CAAATAATTTGGTAGAACAG+TGG 0.655707 2.3:+5263911 None:intergenic
ATGATTGCTGATTCAAGTGG+GGG 0.665274 2.3:+5261525 None:intergenic
CTTGAAAGTAGTGCTATTTG+GGG 0.666143 2.3:+5264204 None:intergenic
CCTATAACTCTGGAGTTAGG+GGG 0.670137 2.3:-5263643 MS.gene78391:CDS
TGGTGACATGGAGTTCTCAG+TGG 0.677211 2.3:-5264755 None:intergenic
CATGATTGCTGATTCAAGTG+GGG 0.687119 2.3:+5261524 None:intergenic
CTTTGACATTAGGTTCACTG+AGG 0.691733 2.3:+5262778 None:intergenic
ATTCAGTCACCATAAAGCTG+TGG 0.694399 2.3:-5260589 MS.gene78391:CDS
ATTATGAGGACTAGACCAAG+AGG 0.704548 2.3:+5264162 None:intergenic
AACTTGTTAAGATTCCATGG+AGG 0.758325 2.3:+5260528 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTAAAAAAATAAATAAAAT+CGG + chr2.3:5262028-5262047 None:intergenic 0.0%
!! TAAAAAAATAAATAAAATCG+GGG + chr2.3:5262026-5262045 None:intergenic 10.0%
!! TTTCAATAAACTAAATATAA+TGG + chr2.3:5260871-5260890 None:intergenic 10.0%
!!! AATAAGGTATTAAAAAAAAA+AGG + chr2.3:5263111-5263130 None:intergenic 10.0%
!!! AGTTTTATTAATATAAACTA+AGG - chr2.3:5261876-5261895 MS.gene78391:intron 10.0%
!! ATTCCCAAATAAATATTATT+TGG - chr2.3:5262670-5262689 MS.gene78391:intron 15.0%
!! CAAAATCAAGAAAAAATTAA+AGG + chr2.3:5262772-5262791 None:intergenic 15.0%
!! CCTATATTAATAAAACTTAA+TGG + chr2.3:5261736-5261755 None:intergenic 15.0%
!! GCAAATTATATATATACATA+TGG + chr2.3:5260717-5260736 None:intergenic 15.0%
!! TGTCCAAATAATATTTATTT+GGG + chr2.3:5262676-5262695 None:intergenic 15.0%
!!! AAATAGTCTTAAAAAAAACT+TGG + chr2.3:5264291-5264310 None:intergenic 15.0%
!!! AATTTATTCAAAGGTATTTT+AGG - chr2.3:5263349-5263368 MS.gene78391:intron 15.0%
!!! AGTTAACTACTTTTTTTTAA+AGG + chr2.3:5263222-5263241 None:intergenic 15.0%
!!! ATGATTTTTCTTTCTTTTAA+CGG - chr2.3:5264227-5264246 MS.gene78391:intron 15.0%
!!! ATGTATATTTCTGTTTAATT+TGG - chr2.3:5260670-5260689 MS.gene78391:CDS 15.0%
!!! CCATTAAGTTTTATTAATAT+AGG - chr2.3:5261733-5261752 MS.gene78391:intron 15.0%
!!! GTTAACTACTTTTTTTTAAA+GGG + chr2.3:5263221-5263240 None:intergenic 15.0%
!!! TATGTATATATATAATTTGC+AGG - chr2.3:5260717-5260736 MS.gene78391:intron 15.0%
!!! TTTAATTTCATGTAAAAGTA+TGG + chr2.3:5260909-5260928 None:intergenic 15.0%
!! ATAATCATGTAAGGAAAAAT+TGG + chr2.3:5263558-5263577 None:intergenic 20.0%
!! ATATATATACATATGGTCTA+TGG + chr2.3:5260710-5260729 None:intergenic 20.0%
!! ATCATAAAGATAATCATGTA+AGG + chr2.3:5263567-5263586 None:intergenic 20.0%
!! CAAAAACTCTATAATGTTTA+TGG + chr2.3:5263315-5263334 None:intergenic 20.0%
!! CAAACCCAAATAAAAATATT+TGG + chr2.3:5262804-5262823 None:intergenic 20.0%
!! GATTAAAAAGGACTAAAATA+AGG + chr2.3:5263744-5263763 None:intergenic 20.0%
!! GTGTCCAAATAATATTTATT+TGG + chr2.3:5262677-5262696 None:intergenic 20.0%
!! TAAACAATTGAAACTAAACT+TGG + chr2.3:5263816-5263835 None:intergenic 20.0%
!! TGAAATCTTATGTAGATTTA+TGG - chr2.3:5263605-5263624 MS.gene78391:CDS 20.0%
!! TTGATTGCTTATATATGAAA+CGG + chr2.3:5263186-5263205 None:intergenic 20.0%
!! TTGTAATGATCCAATATATT+AGG - chr2.3:5261455-5261474 MS.gene78391:intron 20.0%
!!! AAAGAGTTTAAATCTTTTCT+AGG - chr2.3:5261947-5261966 MS.gene78391:intron 20.0%
!!! AGTTGTTTTTTCTTTTTCTT+TGG + chr2.3:5263415-5263434 None:intergenic 20.0%
!!! ATGTTTATTATTTGAAGTCA+AGG + chr2.3:5263019-5263038 None:intergenic 20.0%
!!! ATTGGTGTTGATAAAATTAA+CGG + chr2.3:5264445-5264464 None:intergenic 20.0%
!!! CTGTTAAGTTGAAAATAATA+AGG + chr2.3:5260940-5260959 None:intergenic 20.0%
!!! CTTATTATTTTCAACTTAAC+AGG - chr2.3:5260938-5260957 MS.gene78391:intron 20.0%
!!! GCTTTTGAAAACATTTTTTT+AGG + chr2.3:5263516-5263535 None:intergenic 20.0%
!!! GTGACCAAATATTTTTATTT+GGG - chr2.3:5262797-5262816 MS.gene78391:CDS 20.0%
!!! TATATATATAATTTGCAGGT+TGG - chr2.3:5260721-5260740 MS.gene78391:intron 20.0%
!!! TGTGACCAAATATTTTTATT+TGG - chr2.3:5262796-5262815 MS.gene78391:CDS 20.0%
!!! TTAATTTTATCAACACCAAT+TGG - chr2.3:5264445-5264464 MS.gene78391:intron 20.0%
!!! TTGAAGAATACTGATTAAAA+AGG + chr2.3:5263756-5263775 None:intergenic 20.0%
!!! TTTTTCCTCTTAAGAATTTT+AGG - chr2.3:5262963-5262982 MS.gene78391:intron 20.0%
!!! TTTTTTTTGTACATAGATCT+CGG + chr2.3:5263474-5263493 None:intergenic 20.0%
!!! TTTTTTTTTGCAGTATATAG+CGG - chr2.3:5264491-5264510 MS.gene78391:intron 20.0%
! AACTAAACTTGGTTAACATT+TGG + chr2.3:5263805-5263824 None:intergenic 25.0%
! AAGTTGAAAATAATAAGGCA+CGG + chr2.3:5260935-5260954 None:intergenic 25.0%
! AATTGAAATGAAAAGCAAGA+AGG + chr2.3:5261398-5261417 None:intergenic 25.0%
! ACCTAAAGAGAATAAAACAA+AGG + chr2.3:5262267-5262286 None:intergenic 25.0%
! ACTTATCTTACAGTGATAAT+GGG + chr2.3:5263702-5263721 None:intergenic 25.0%
! AGAAGGTAAAAGAAATAGTA+AGG + chr2.3:5261381-5261400 None:intergenic 25.0%
! AGTTTCAATTGTTTATTTGC+AGG - chr2.3:5263821-5263840 MS.gene78391:intron 25.0%
! ATTATCTTTCATATGCCAAT+TGG + chr2.3:5264463-5264482 None:intergenic 25.0%
! ATTTAATGATGCAATTCTAC+AGG - chr2.3:5263971-5263990 MS.gene78391:CDS 25.0%
! ATTTCTCATTTAGTCATTCT+TGG + chr2.3:5262859-5262878 None:intergenic 25.0%
! ATTTCTGTTGAACAATAAGA+TGG - chr2.3:5262065-5262084 MS.gene78391:intron 25.0%
! CAAAAGTAGCAAATTAATGA+AGG - chr2.3:5261674-5261693 MS.gene78391:intron 25.0%
! CAATAAAGTCCTTCAAAAAA+TGG - chr2.3:5260770-5260789 MS.gene78391:intron 25.0%
! CATAAAAATACCGAATTGTT+AGG - chr2.3:5261764-5261783 MS.gene78391:intron 25.0%
! CATAGTAGTGAAAATATGTT+AGG + chr2.3:5264043-5264062 None:intergenic 25.0%
! CCAAATTATTTGGACAATAA+TGG - chr2.3:5261273-5261292 MS.gene78391:CDS 25.0%
! CCATTATTGTCCAAATAATT+TGG + chr2.3:5261276-5261295 None:intergenic 25.0%
! GAAGGGATTAAAAAAATGTT+TGG - chr2.3:5262300-5262319 MS.gene78391:intron 25.0%
! GCTTACAATTTAAACTACAT+TGG - chr2.3:5264684-5264703 MS.gene78391:CDS 25.0%
! TAACTTTGTCAAAGAAAATG+AGG - chr2.3:5260538-5260557 MS.gene78391:CDS 25.0%
! TACTTATCTTACAGTGATAA+TGG + chr2.3:5263703-5263722 None:intergenic 25.0%
! TAGGTAAACCAAAATGATAA+TGG + chr2.3:5261851-5261870 None:intergenic 25.0%
! TCTAACCGTATATAAATAGT+CGG + chr2.3:5264198-5264217 None:intergenic 25.0%
! TGATTGCTTATATATGAAAC+GGG + chr2.3:5263185-5263204 None:intergenic 25.0%
! TGTAATAGAAAGAAGAAAGA+AGG + chr2.3:5263145-5263164 None:intergenic 25.0%
! TTCAAAACGTTCATTATATG+AGG - chr2.3:5264737-5264756 MS.gene78391:CDS 25.0%
!! GGAAAATTGTACATTTTACA+AGG + chr2.3:5263451-5263470 None:intergenic 25.0%
!! GTTAAAGAAATCCATTGATT+TGG - chr2.3:5260747-5260766 MS.gene78391:intron 25.0%
!! TTTTCACAATAAGATAGTGA+GGG + chr2.3:5264365-5264384 None:intergenic 25.0%
!!! AAGAACATGAGAAAGTATTA+TGG - chr2.3:5260461-5260480 MS.gene78391:CDS 25.0%
!!! AGAACATGAGAAAGTATTAT+GGG - chr2.3:5260462-5260481 MS.gene78391:CDS 25.0%
!!! TCCTTTGTTTTATTCTCTTT+AGG - chr2.3:5262263-5262282 MS.gene78391:intron 25.0%
!!! TTTGTTTTATTCTCTTTAGG+TGG - chr2.3:5262266-5262285 MS.gene78391:intron 25.0%
!!! TTTTTTTGTACATAGATCTC+GGG + chr2.3:5263473-5263492 None:intergenic 25.0%
AAAGTCCTTCAAAAAATGGA+TGG - chr2.3:5260774-5260793 MS.gene78391:intron 30.0%
AAATGAGGAAGAAATCTTGA+AGG - chr2.3:5260553-5260572 MS.gene78391:CDS 30.0%
AATGGCATTAAGATCATTGA+AGG - chr2.3:5261291-5261310 MS.gene78391:CDS 30.0%
AATTCCATGATGAGATTATG+AGG + chr2.3:5261028-5261047 None:intergenic 30.0%
ACCATCCTAAAATTCTTAAG+AGG + chr2.3:5262971-5262990 None:intergenic 30.0%
AGCAACTCCTACATAAAAAA+TGG - chr2.3:5261331-5261350 MS.gene78391:CDS 30.0%
AGGAATGATAGCATTAACTA+TGG - chr2.3:5263369-5263388 MS.gene78391:intron 30.0%
ATCATGACAGAAGAAATCTT+TGG - chr2.3:5263666-5263685 MS.gene78391:CDS 30.0%
ATCATTAAATACAATGCTCC+CGG + chr2.3:5263961-5263980 None:intergenic 30.0%
ATGTACCTTCTATTGTAGAA+AGG - chr2.3:5261632-5261651 MS.gene78391:intron 30.0%
CAAATAATTTGGTAGAACAG+TGG + chr2.3:5261265-5261284 None:intergenic 30.0%
CAAGGTGAAAACATGAAATA+TGG + chr2.3:5263001-5263020 None:intergenic 30.0%
CACTGTTCTACCAAATTATT+TGG - chr2.3:5261263-5261282 MS.gene78391:CDS 30.0%
GCAACTCCTACATAAAAAAT+GGG - chr2.3:5261332-5261351 MS.gene78391:CDS 30.0%
GTTCATTTAATCTTCTCACA+TGG - chr2.3:5261608-5261627 MS.gene78391:intron 30.0%
TATGGAACCAACAATATTAC+TGG - chr2.3:5263623-5263642 MS.gene78391:CDS 30.0%
TGAACCTAATGTCAAAGAAT+CGG - chr2.3:5262401-5262420 MS.gene78391:intron 30.0%
TGATTCACTTTCAACTTCTT+GGG - chr2.3:5261571-5261590 MS.gene78391:intron 30.0%
TGTAGCCGACTATTTATATA+CGG - chr2.3:5264190-5264209 MS.gene78391:CDS 30.0%
TTAACCTGAAAAGTCTTTCA+TGG - chr2.3:5262643-5262662 MS.gene78391:intron 30.0%
TTCAATTGTTTATTTGCAGG+TGG - chr2.3:5263824-5263843 MS.gene78391:CDS 30.0%
TTGATTCACTTTCAACTTCT+TGG - chr2.3:5261570-5261589 MS.gene78391:intron 30.0%
! CTTTTCACAATAAGATAGTG+AGG + chr2.3:5264366-5264385 None:intergenic 30.0%
! TCATCATGGAATTTTCCATT+TGG - chr2.3:5261035-5261054 MS.gene78391:intron 30.0%
! TCCATTTGGTGAGTAAAATA+TGG - chr2.3:5261049-5261068 MS.gene78391:intron 30.0%
!! ACCAAAATGATAATGGTCAT+CGG + chr2.3:5261844-5261863 None:intergenic 30.0%
!! ACTTGAAAGTAGTGCTATTT+GGG + chr2.3:5260973-5260992 None:intergenic 30.0%
!! AGGAAAAATTGGTCTCTTTT+AGG + chr2.3:5263547-5263566 None:intergenic 30.0%
!! AGTATTCTTCAAAAGTGTCA+AGG - chr2.3:5263764-5263783 MS.gene78391:intron 30.0%
!! GAAAAACAAAAGAAGCATCA+TGG - chr2.3:5260489-5260508 MS.gene78391:CDS 30.0%
!! TCCTCTTAAGAATTTTAGGA+TGG - chr2.3:5262967-5262986 MS.gene78391:intron 30.0%
!! TTTCTCTTGGTTTTTGTAAC+AGG - chr2.3:5261144-5261163 MS.gene78391:intron 30.0%
!!! CAATGCTGTTGGATTTTTTT+GGG + chr2.3:5262332-5262351 None:intergenic 30.0%
!!! GAAGTTACTACACTGATTTT+TGG - chr2.3:5264613-5264632 MS.gene78391:CDS 30.0%
!!! GGAATACTTCTTGTTTTACT+CGG - chr2.3:5264705-5264724 MS.gene78391:CDS 30.0%
!!! TCGACGAAGTTTTAAATTCA+CGG - chr2.3:5262498-5262517 MS.gene78391:intron 30.0%
!!! TCTTGTCCCATTTTTTATGT+AGG + chr2.3:5261341-5261360 None:intergenic 30.0%
!!! TTTTTTGTACATAGATCTCG+GGG + chr2.3:5263472-5263491 None:intergenic 30.0%
AAAAATCCAACAGCATTGCA+AGG - chr2.3:5262334-5262353 MS.gene78391:intron 35.0%
AGAGAAGTTAAGTGGAAGTT+TGG + chr2.3:5264095-5264114 None:intergenic 35.0%
CATTGCCTTTCTACAATAGA+AGG + chr2.3:5261640-5261659 None:intergenic 35.0%
CTAGAAGAGAAGAAGAAGTA+GGG + chr2.3:5261242-5261261 None:intergenic 35.0%
CTCCTAACATATAGTCATTG+TGG + chr2.3:5261905-5261924 None:intergenic 35.0%
CTTGCAAAACAAAACCTTAC+TGG + chr2.3:5264069-5264088 None:intergenic 35.0%
GCATAAATTGCTAGAGGTTT+AGG + chr2.3:5263888-5263907 None:intergenic 35.0%
GGACTTTATTGCCAAATCAA+TGG + chr2.3:5260761-5260780 None:intergenic 35.0%
GTCCACAATGACTATATGTT+AGG - chr2.3:5261900-5261919 MS.gene78391:intron 35.0%
GTTCAAAGTTGTGTTTCTCT+TGG - chr2.3:5261131-5261150 MS.gene78391:intron 35.0%
TAGAAGAGAAGAAGAAGTAG+GGG + chr2.3:5261241-5261260 None:intergenic 35.0%
TAGGACATTCGCAAAATGAT+CGG - chr2.3:5261966-5261985 MS.gene78391:intron 35.0%
TAGTCCTCATAATCTCATCA+TGG - chr2.3:5261021-5261040 MS.gene78391:intron 35.0%
TCACTACTATGAAACCAGTA+AGG - chr2.3:5264052-5264071 MS.gene78391:intron 35.0%
TCGTGCACTTCCTAATATAT+TGG + chr2.3:5261468-5261487 None:intergenic 35.0%
TCTATTGTAGAAAGGCAATG+TGG - chr2.3:5261640-5261659 MS.gene78391:intron 35.0%
TCTTTAGGTGGAGTTAATGA+AGG - chr2.3:5262278-5262297 MS.gene78391:intron 35.0%
TGCTTATATATGAAACGGGA+GGG + chr2.3:5263181-5263200 None:intergenic 35.0%
TGGAGAGAATCACAACTAAA+AGG - chr2.3:5260509-5260528 MS.gene78391:CDS 35.0%
TGTAAGCTTCTTCAAGTAGT+TGG + chr2.3:5264671-5264690 None:intergenic 35.0%
TGTTTATGGAACAAGTTCTC+AGG + chr2.3:5263301-5263320 None:intergenic 35.0%
TTCTTGGATAAGTCAATTCG+AGG + chr2.3:5262843-5262862 None:intergenic 35.0%
TTGCTTATATATGAAACGGG+AGG + chr2.3:5263182-5263201 None:intergenic 35.0%
! AACTGAAGCTCTTTTCTACA+AGG + chr2.3:5262161-5262180 None:intergenic 35.0%
! ATGAGTTGGGATTCAATCAA+CGG + chr2.3:5261803-5261822 None:intergenic 35.0%
! CACTTGAAAGTAGTGCTATT+TGG + chr2.3:5260974-5260993 None:intergenic 35.0%
! GCCATATTTTACTCACCAAA+TGG + chr2.3:5261053-5261072 None:intergenic 35.0%
! GTGAAAGCATAAATTGCTAG+AGG + chr2.3:5263894-5263913 None:intergenic 35.0%
! TCCGATGACCATTATCATTT+TGG - chr2.3:5261840-5261859 MS.gene78391:intron 35.0%
! TGGGACAAGATATTTTTCAC+TGG - chr2.3:5261351-5261370 MS.gene78391:intron 35.0%
! TTGGTATCTGAAACATCATC+CGG - chr2.3:5263939-5263958 MS.gene78391:CDS 35.0%
!! AACTTGTTAAGATTCCATGG+AGG + chr2.3:5264648-5264667 None:intergenic 35.0%
!! AATTTTGGTGGCAAAGTATG+GGG - chr2.3:5262098-5262117 MS.gene78391:intron 35.0%
!! ATGAGAAAGTATTATGGGAG+TGG - chr2.3:5260467-5260486 MS.gene78391:CDS 35.0%
!! CTTGAAAGTAGTGCTATTTG+GGG + chr2.3:5260972-5260991 None:intergenic 35.0%
!! GAATTTTGGTGGCAAAGTAT+GGG - chr2.3:5262097-5262116 MS.gene78391:intron 35.0%
!! TCATGATTGCTGATTCAAGT+GGG + chr2.3:5263653-5263672 None:intergenic 35.0%
!! TGGAACTTGTTAAGATTCCA+TGG + chr2.3:5264651-5264670 None:intergenic 35.0%
!!! ACTACACTGATTTTTGGTTC+AGG - chr2.3:5264619-5264638 MS.gene78391:CDS 35.0%
!!! GCAATGCTGTTGGATTTTTT+TGG + chr2.3:5262333-5262352 None:intergenic 35.0%
!!! TGGTCTCTTTTAGGTTCATT+TGG + chr2.3:5263538-5263557 None:intergenic 35.0%
!!! TTTCCTGCTTTTTACCAATG+TGG + chr2.3:5262184-5262203 None:intergenic 35.0%
AAAATGGATGGCTGGTAAAG+AGG - chr2.3:5260786-5260805 MS.gene78391:intron 40.0%
AAAGAGCTTCAGTTCCACAT+TGG - chr2.3:5262167-5262186 MS.gene78391:intron 40.0%
AACAATCCTTGCAATGCTGT+TGG + chr2.3:5262343-5262362 None:intergenic 40.0%
AAGTCAATTCGAGGCACAAT+TGG + chr2.3:5262834-5262853 None:intergenic 40.0%
ACCTAATGTCAAAGAATCGG+TGG - chr2.3:5262404-5262423 MS.gene78391:intron 40.0%
AGCTTGAGAGAGAAGTTAAG+TGG + chr2.3:5264103-5264122 None:intergenic 40.0%
AGGTGGAGTTAATGAAGGAA+GGG - chr2.3:5262283-5262302 MS.gene78391:intron 40.0%
AGTCCTAAAACCTTCAGAGT+TGG - chr2.3:5261215-5261234 MS.gene78391:CDS 40.0%
AGTCGGCTACATCATAAAAC+AGG + chr2.3:5264181-5264200 None:intergenic 40.0%
ATTATGAGGACTAGACCAAG+AGG + chr2.3:5261014-5261033 None:intergenic 40.0%
ATTCACCAACTCCTCCAAAT+GGG + chr2.3:5264524-5264543 None:intergenic 40.0%
ATTCAGTCACCATAAAGCTG+TGG - chr2.3:5264584-5264603 MS.gene78391:CDS 40.0%
ATTGAAGGTGGACCAGAAAT+TGG - chr2.3:5261306-5261325 MS.gene78391:CDS 40.0%
CAAAACACTGCAGAGAAGAT+TGG - chr2.3:5263920-5263939 MS.gene78391:CDS 40.0%
CACAGACTAGTGAATGAGTT+GGG + chr2.3:5261816-5261835 None:intergenic 40.0%
CTTCCCTAAATCCTTCTTGA+GGG + chr2.3:5260579-5260598 None:intergenic 40.0%
CTTTGACATTAGGTTCACTG+AGG + chr2.3:5262398-5262417 None:intergenic 40.0%
GAAGGCGAGCTATAGAAATA+AGG + chr2.3:5263127-5263146 None:intergenic 40.0%
GAGGAGACTCTTGATTCTAT+TGG + chr2.3:5262379-5262398 None:intergenic 40.0%
GCATCGTAAGTCGATTGTAT+AGG - chr2.3:5264263-5264282 MS.gene78391:intron 40.0%
GCTAGAAGAGAAGAAGAAGT+AGG + chr2.3:5261243-5261262 None:intergenic 40.0%
GGCATTAAGATCATTGAAGG+TGG - chr2.3:5261294-5261313 MS.gene78391:CDS 40.0%
GTGGATTTGGCAAGTATCAT+GGG - chr2.3:5264544-5264563 MS.gene78391:intron 40.0%
GTTCCACATTGGTAAAAAGC+AGG - chr2.3:5262178-5262197 MS.gene78391:intron 40.0%
TAGGTGGAGTTAATGAAGGA+AGG - chr2.3:5262282-5262301 MS.gene78391:intron 40.0%
TATGGAACAAGTTCTCAGGA+GGG + chr2.3:5263297-5263316 None:intergenic 40.0%
TCACAGACTAGTGAATGAGT+TGG + chr2.3:5261817-5261836 None:intergenic 40.0%
TCCTTCAAAAAATGGATGGC+TGG - chr2.3:5260778-5260797 MS.gene78391:intron 40.0%
TGGGATTCAATCAACGGTTA+CGG + chr2.3:5261797-5261816 None:intergenic 40.0%
TGTAGAAAGGCAATGTGGAA+TGG - chr2.3:5261645-5261664 MS.gene78391:intron 40.0%
TGTGGATTTGGCAAGTATCA+TGG - chr2.3:5264543-5264562 MS.gene78391:intron 40.0%
TTATGGAACAAGTTCTCAGG+AGG + chr2.3:5263298-5263317 None:intergenic 40.0%
! ATATTAGGAAGTGCACGAGT+GGG - chr2.3:5261470-5261489 MS.gene78391:intron 40.0%
! GATGGCTGTGAAACGAATTT+TGG - chr2.3:5262083-5262102 MS.gene78391:intron 40.0%
! GTCAAAGAATCGGTGGTTTT+TGG - chr2.3:5262411-5262430 MS.gene78391:intron 40.0%
! GTGTCCATGAAAGACTTTTC+AGG + chr2.3:5262650-5262669 None:intergenic 40.0%
! TATATTAGGAAGTGCACGAG+TGG - chr2.3:5261469-5261488 MS.gene78391:intron 40.0%
! TGGTATCTGAAACATCATCC+GGG - chr2.3:5263940-5263959 MS.gene78391:CDS 40.0%
!! AAAGAATCGGTGGTTTTTGG+TGG - chr2.3:5262414-5262433 MS.gene78391:intron 40.0%
!! ACCACCGATTCTTTGACATT+AGG + chr2.3:5262408-5262427 None:intergenic 40.0%
!! ACTCCTATAACTCTGGAGTT+AGG - chr2.3:5261527-5261546 MS.gene78391:CDS 40.0%
!! ATGATTGCTGATTCAAGTGG+GGG + chr2.3:5263651-5263670 None:intergenic 40.0%
!! CATGATTGCTGATTCAAGTG+GGG + chr2.3:5263652-5263671 None:intergenic 40.0%
!! CGAATTTTGGTGGCAAAGTA+TGG - chr2.3:5262096-5262115 MS.gene78391:intron 40.0%
!! CTCCTATAACTCTGGAGTTA+GGG - chr2.3:5261528-5261547 MS.gene78391:CDS 40.0%
!! GTCATGATTGCTGATTCAAG+TGG + chr2.3:5263654-5263673 None:intergenic 40.0%
!! TACAGTGATAATGGGAAGCA+CGG + chr2.3:5263694-5263713 None:intergenic 40.0%
!! TCCTATAACTCTGGAGTTAG+GGG - chr2.3:5261529-5261548 MS.gene78391:CDS 40.0%
!! TGTTGAGGCTTTTAGAGATG+AGG - chr2.3:5260604-5260623 MS.gene78391:CDS 40.0%
!! TTTAGGGAAGCATCATGTTG+AGG - chr2.3:5260589-5260608 MS.gene78391:CDS 40.0%
!!! ACCAGCCATCCATTTTTTGA+AGG + chr2.3:5260782-5260801 None:intergenic 40.0%
!!! TTTTGTAACAGGAGTGTCCT+TGG - chr2.3:5261155-5261174 MS.gene78391:intron 40.0%
AAGGCCCTCAAGAAGGATTT+AGG - chr2.3:5260572-5260591 MS.gene78391:CDS 45.0%
AATCTTGAAGGCCCTCAAGA+AGG - chr2.3:5260565-5260584 MS.gene78391:CDS 45.0%
AGGAGTTGCTCTCCAATTTC+TGG + chr2.3:5261321-5261340 None:intergenic 45.0%
AGGCCCTCAAGAAGGATTTA+GGG - chr2.3:5260573-5260592 MS.gene78391:CDS 45.0%
CAATTCGAGGCACAATTGGT+TGG + chr2.3:5262830-5262849 None:intergenic 45.0%
CAGGTGGAGAAGATTGAAGA+CGG - chr2.3:5263840-5263859 MS.gene78391:CDS 45.0%
CATTCACCAACTCCTCCAAA+TGG + chr2.3:5264525-5264544 None:intergenic 45.0%
CGGTGTGCAACCTAACAATT+CGG + chr2.3:5261777-5261796 None:intergenic 45.0%
GAAAGTGAATCAACCAGTGC+TGG + chr2.3:5261563-5261582 None:intergenic 45.0%
GAAATTGTTGCTGAGCCTCT+TGG - chr2.3:5260996-5261015 MS.gene78391:intron 45.0%
GATTGTTATGTCTGCAGCAG+TGG - chr2.3:5261496-5261515 MS.gene78391:CDS 45.0%
GCAGCTATGGCTCCAATTAA+TGG + chr2.3:5261183-5261202 None:intergenic 45.0%
GCATCTCACTCCTATAACTC+TGG - chr2.3:5261520-5261539 MS.gene78391:CDS 45.0%
GCTTCCCTAAATCCTTCTTG+AGG + chr2.3:5260580-5260599 None:intergenic 45.0%
GGGGGATCCAGTAATATTGT+TGG + chr2.3:5263633-5263652 None:intergenic 45.0%
GTGTCCTTGGAGCCATTAAT+TGG - chr2.3:5261168-5261187 MS.gene78391:intron 45.0%
TGCAACATTTCCAGCAGCTA+TGG + chr2.3:5261196-5261215 None:intergenic 45.0%
TTAATTGGAGCCATAGCTGC+TGG - chr2.3:5261183-5261202 MS.gene78391:intron 45.0%
TTCAACTTCTTGGGACAGAG+AGG - chr2.3:5261580-5261599 MS.gene78391:intron 45.0%
TTCTCCTAGCCACAGCTTTA+TGG + chr2.3:5264596-5264615 None:intergenic 45.0%
! AGTTCTCAGGAGGGATGTTT+TGG + chr2.3:5263288-5263307 None:intergenic 45.0%
! GGCTGTGAAACGAATTTTGG+TGG - chr2.3:5262086-5262105 MS.gene78391:intron 45.0%
! TATTAGGAAGTGCACGAGTG+GGG - chr2.3:5261471-5261490 MS.gene78391:intron 45.0%
! TTTGGTTCAGGTTTCCTCCA+TGG - chr2.3:5264631-5264650 MS.gene78391:CDS 45.0%
!! ACAGTGATAATGGGAAGCAC+GGG + chr2.3:5263693-5263712 None:intergenic 45.0%
!! ATAGCGGATACCATCCCATT+TGG - chr2.3:5264507-5264526 MS.gene78391:intron 45.0%
!! CCTATAACTCTGGAGTTAGG+GGG - chr2.3:5261530-5261549 MS.gene78391:CDS 45.0%
!! GGAGTTGGTGAATGTGGATT+TGG - chr2.3:5264531-5264550 MS.gene78391:intron 45.0%
!! TTTGGAGGAGTTGGTGAATG+TGG - chr2.3:5264525-5264544 MS.gene78391:intron 45.0%
!! TAAAATTTAAATTTATTCAA+AGG - chr2.3:5263340-5263359 MS.gene78391:intron 5.0%
!! TTAAAAAAATAAATAAAATC+GGG + chr2.3:5262027-5262046 None:intergenic 5.0%
!!! ATATTAATAAAACTTTTTTT+AGG + chr2.3:5261870-5261889 None:intergenic 5.0%
ACCAACTCCTCCAAATGGGA+TGG + chr2.3:5264520-5264539 None:intergenic 50.0%
ACCATCCCATTTGGAGGAGT+TGG - chr2.3:5264516-5264535 MS.gene78391:intron 50.0%
CCCCCTAACTCCAGAGTTAT+AGG + chr2.3:5261533-5261552 None:intergenic 50.0%
GGAGTTCTCAGTGGAAGCTT+TGG - chr2.3:5260427-5260446 MS.gene78391:CDS 50.0%
GGCTCCAATTAATGGCTCCA+AGG + chr2.3:5261175-5261194 None:intergenic 50.0%
GTCACCATAAAGCTGTGGCT+AGG - chr2.3:5264589-5264608 MS.gene78391:CDS 50.0%
!! GGGCCAACTCTGAAGGTTTT+AGG + chr2.3:5261221-5261240 None:intergenic 50.0%
AGGGGGAAAATGTCCAGCAC+TGG - chr2.3:5261547-5261566 MS.gene78391:CDS 55.0%
GAAGTAGGGGCCAACTCTGA+AGG + chr2.3:5261228-5261247 None:intergenic 55.0%
GCAAAGTATGGGGCTTGTGC+AGG - chr2.3:5262108-5262127 MS.gene78391:intron 55.0%
GCGGATACCATCCCATTTGG+AGG - chr2.3:5264510-5264529 MS.gene78391:intron 55.0%
! TAGGAAGTGCACGAGTGGGG+AGG - chr2.3:5261474-5261493 MS.gene78391:intron 60.0%


Chromosome Type Strat End Strand Name
chr2.3 gene 5260425 5264770 5260425 ID=MS.gene78391
chr2.3 mRNA 5260425 5264770 5260425 ID=MS.gene78391.t1;Parent=MS.gene78391
chr2.3 exon 5264570 5264770 5264570 ID=MS.gene78391.t1.exon1;Parent=MS.gene78391.t1
chr2.3 CDS 5264570 5264770 5264570 ID=cds.MS.gene78391.t1;Parent=MS.gene78391.t1
chr2.3 exon 5264388 5264456 5264388 ID=MS.gene78391.t1.exon2;Parent=MS.gene78391.t1
chr2.3 CDS 5264388 5264456 5264388 ID=cds.MS.gene78391.t1;Parent=MS.gene78391.t1
chr2.3 exon 5264139 5264235 5264139 ID=MS.gene78391.t1.exon3;Parent=MS.gene78391.t1
chr2.3 CDS 5264139 5264235 5264139 ID=cds.MS.gene78391.t1;Parent=MS.gene78391.t1
chr2.3 exon 5263823 5264029 5263823 ID=MS.gene78391.t1.exon4;Parent=MS.gene78391.t1
chr2.3 CDS 5263823 5264029 5263823 ID=cds.MS.gene78391.t1;Parent=MS.gene78391.t1
chr2.3 exon 5263594 5263718 5263594 ID=MS.gene78391.t1.exon5;Parent=MS.gene78391.t1
chr2.3 CDS 5263594 5263718 5263594 ID=cds.MS.gene78391.t1;Parent=MS.gene78391.t1
chr2.3 exon 5263007 5263111 5263007 ID=MS.gene78391.t1.exon6;Parent=MS.gene78391.t1
chr2.3 CDS 5263007 5263111 5263007 ID=cds.MS.gene78391.t1;Parent=MS.gene78391.t1
chr2.3 exon 5262738 5262910 5262738 ID=MS.gene78391.t1.exon7;Parent=MS.gene78391.t1
chr2.3 CDS 5262738 5262910 5262738 ID=cds.MS.gene78391.t1;Parent=MS.gene78391.t1
chr2.3 exon 5261485 5261575 5261485 ID=MS.gene78391.t1.exon8;Parent=MS.gene78391.t1
chr2.3 CDS 5261485 5261575 5261485 ID=cds.MS.gene78391.t1;Parent=MS.gene78391.t1
chr2.3 exon 5261203 5261352 5261203 ID=MS.gene78391.t1.exon9;Parent=MS.gene78391.t1
chr2.3 CDS 5261203 5261352 5261203 ID=cds.MS.gene78391.t1;Parent=MS.gene78391.t1
chr2.3 exon 5260425 5260691 5260425 ID=MS.gene78391.t1.exon10;Parent=MS.gene78391.t1
chr2.3 CDS 5260425 5260691 5260425 ID=cds.MS.gene78391.t1;Parent=MS.gene78391.t1
Gene Sequence

>MS.gene78391

ATGGAGTTCTCAGTGGAAGCTTTGGAGAGAGATATAAAGAACATGAGAAAGTATTATGGGAGTGGAAAAACAAAAGAAGCATCATGGAGAGAATCACAACTAAAAGGATTGCGTAACTTTGTCAAAGAAAATGAGGAAGAAATCTTGAAGGCCCTCAAGAAGGATTTAGGGAAGCATCATGTTGAGGCTTTTAGAGATGAGGTGTTTCTTATTCTACTTGCTACTCTTATAATAGTAATATGTATATGTATATTTCTGTTTAATTTGGTTTGCTTAATTAATCCATAGACCATATGTATATATATAATTTGCAGGTTGGAACGTTAAAGAAATCCATTGATTTGGCAATAAAGTCCTTCAAAAAATGGATGGCTGGTAAAGAGGTTAGTTTATATATGTACAACACATGCAAAACAAATGAGAAAAGTATATATTTTTTATTTCCATTATATTTAGTTTATTGAAAAGAAGAACAGTTGCACCATACTTTTACATGAAATTAAAGAACCGTGCCTTATTATTTTCAACTTAACAGGCTAAACTGCCCCAAATAGCACTACTTTCAAGTGCAGAAATTGTTGCTGAGCCTCTTGGTCTAGTCCTCATAATCTCATCATGGAATTTTCCATTTGGTGAGTAAAATATGGCTGCAGACATAAAATAAACTTTTAGTATATACAAATTAAATCTATAAAAAAAAAATTAAGTTCAAAGTTGTGTTTCTCTTGGTTTTTGTAACAGGAGTGTCCTTGGAGCCATTAATTGGAGCCATAGCTGCTGGAAATGTTGCAGTCCTAAAACCTTCAGAGTTGGCCCCTACTTCTTCTTCTCTTCTAGCCACTGTTCTACCAAATTATTTGGACAATAATGGCATTAAGATCATTGAAGGTGGACCAGAAATTGGAGAGCAACTCCTACATAAAAAATGGGACAAGATATTTTTCACTGGTCAACCTTACTATTTCTTTTACCTTCTTGCTTTTCATTTCAATTTTCTTAACTTTTGATAAAAAAAATTAATTAATTAAACTTGTAATGATCCAATATATTAGGAAGTGCACGAGTGGGGAGGATTGTTATGTCTGCAGCAGTGGAGCATCTCACTCCTATAACTCTGGAGTTAGGGGGAAAATGTCCAGCACTGGTTGATTCACTTTCAACTTCTTGGGACAGAGAGGTACATGTTCATTTAATCTTCTCACATGGAATGTACCTTCTATTGTAGAAAGGCAATGTGGAATGGACAAAACAAAAGTAGCAAATTAATGAAGGACAAGAAGAAAAAAAAAAAAAGAGTTATTTTTCGTTCCATTAAGTTTTATTAATATAGGACACAAGTCATAAAAATACCGAATTGTTAGGTTGCACACCGTAACCGTTGATTGAATCCCAACTCATTCACTAGTCTGTGAATTTCCGATGACCATTATCATTTTGGTTTACCTAAAAAAAGTTTTATTAATATAAACTAAGGAGTCCACAATGACTATATGTTAGGAGTTTGAACTTATAATCTCAAATGAAAGAGTTTAAATCTTTTCTAGGACATTCGCAAAATGATCGGTGATAACACTTTAACTAATAACAATTTTTTTCTTCCCCGATTTTATTTATTTTTTTAAACTGCTTACAAGATTTTTATTTCTGTTGAACAATAAGATGGCTGTGAAACGAATTTTGGTGGCAAAGTATGGGGCTTGTGCAGGACAAGCATGCATAGCAATTGATTATGTCCTTGTAGAAAAGAGCTTCAGTTCCACATTGGTAAAAAGCAGGAAATAATTTTTTTAAAAGTTTTTTATTATGCTGCAATTACACTATTAATCTTGAAGCATTACTCCTTTGTTTTATTCTCTTTAGGTGGAGTTAATGAAGGAAGGGATTAAAAAAATGTTTGGAGACAACCCAAAAAAATCCAACAGCATTGCAAGGATTGTTAATAAACAACATTCCAATAGAATCAAGAGTCTCCTCAGTGAACCTAATGTCAAAGAATCGGTGGTTTTTGGTGGTTCTATGCACGATGATGACTTGTATGCAATTAATACTCTCTTTTCTTAGTTGCTTGAATGTTCGACGAAGTTTTAAATTCACGGATCATCATTTAATCTCTAAAAATTAGAATTGATTTTTAAAATTAACTGAATTTTAAAAAATATCATTGAATTTATAAAACTTTATTCTCATTAGATTCTATCACACAATTTAAATGATTGAATTAACCTGAAAAGTCTTTCATGGACACATTCCCAAATAAATATTATTTGGACACACTCACATGAAATTAATAAAACTAAATAAAAAGTATTTAATCATATCAATTGATATCTTGTAATTTTATTTTCCTTTAATTTTTTCTTGATTTTGTGTGTGTGACCAAATATTTTTATTTGGGTTTGTGTCCAACCAATTGTGCCTCGAATTGACTTATCCAAGAATGACTAAATGAGAAATTTTAAATATTAAGAATTTTTTCTTCAAAAAATATTAAGAATTTTAATAACTAAATTCACTTGTTTTACATTATAGAACAAGATTTTTTTCCTCTTAAGAATTTTAGGATGGTTTAGTTTCCATATTTCATGTTTTCACCTTGACTTCAAATAATAAACATAAAATGATATAGATTTGATATTTTTCTAAATATTTTCTTGAATAATATTTGAAAATGTGAAAACATTTTCCTTTTTTTTTTAATACCTTATTTCTATAGCTCGCCTTCTTTCTTCTTTCTATTACAATTGTTCATTATTCCCTCCCGTTTCATATATAAGCAATCAAAACTAACTTACACCCTTTAAAAAAAAGTAGTTAACTTTATTTAATTTTCTCAAAGTAACAGAAAAAATAATTGTATTCTCCAAAACATCCCTCCTGAGAACTTGTTCCATAAACATTATAGAGTTTTTGAAAAGTAAAATTTAAATTTATTCAAAGGTATTTTAGGAATGATAGCATTAACTATGGTAAAGTAAGAGAACATGCATCCAAAGAAAAAGAAAAAACAACTTAAAACTCGAAATCCTTGTAAAATGTACAATTTTCCCCGAGATCTATGTACAAAAAAAAAAATTGAGAAATATAAAAACCTAAAAAAATGTTTTCAAAAGCCAAATGAACCTAAAAGAGACCAATTTTTCCTTACATGATTATCTTTATGATCAAAAGTATTTTTTGCACTGAAATCTTATGTAGATTTATGGAACCAACAATATTACTGGATCCCCCACTTGAATCAGCAATCATGACAGAAGAAATCTTTGGTCCCGTGCTTCCCATTATCACTGTAAGATAAGTACAATATTTTTTTTTTCTTCCTTATTTTAGTCCTTTTTAATCAGTATTCTTCAAAAGTGTCAAGGCAAGTGATTCATTAGCCAAATGTTAACCAAGTTTAGTTTCAATTGTTTATTTGCAGGTGGAGAAGATTGAAGACGGTATTGAGTTCATAAACTCAAAGCCTAAACCTCTAGCAATTTATGCTTTCACAAAGAACAAAACACTGCAGAGAAGATTGGTATCTGAAACATCATCCGGGAGCATTGTATTTAATGATGCAATTCTACAGGTATTTATTTGCTGATAGTGACTTACATTATCTTCATTAATTAAAAACCTAACATATTTTCACTACTATGAAACCAGTAAGGTTTTGTTTTGCAAGCTGCCAAACTTCCACTTAACTTCTCTCTCAAGCTTACAACATTTTTTCACGAGCTTATAACATTTTTTTCTAAATTGAATCATCTATAACCTGTTTTATGATGTAGCCGACTATTTATATACGGTTAGATTAAGAAAGATGATTTTTCTTTCTTTTAACGGTCTTCAATCGACTGCATCGTAAGTCGATTGTATAGGATCCAAGTTTTTTTTAAGACTATTTAAGTAGTATTTGAACTTATAATTTATATTGTATTGTTTTTTCTCATTTTTACCCTCACTATCTTATTGTGAAAAGTAAATATTAACTAAAAATATATTTTTTCGTCATTAAATATTTATCACTTGTTTCAACCGTTAATTTTATCAACACCAATTGGCATATGAAAGATAATTTTTTTTTTTTTTTTTTGCAGTATATAGCGGATACCATCCCATTTGGAGGAGTTGGTGAATGTGGATTTGGCAAGTATCATGGGAAGTTCTCATTTGATGCATTCAGTCACCATAAAGCTGTGGCTAGGAGAAGTTACTACACTGATTTTTGGTTCAGGTTTCCTCCATGGAATCTTAACAAGTTCCAACTACTTGAAGAAGCTTACAATTTAAACTACATTGGAATACTTCTTGTTTTACTCGGCTTGAAGAGTTCAAAACGTTCATTATATGAGGCTTGTAAATGA
Protein sequence

>MS.gene78391.t1

MEFSVEALERDIKNMRKYYGSGKTKEASWRESQLKGLRNFVKENEEEILKALKKDLGKHHVEAFRDEVGTLKKSIDLAIKSFKKWMAGKEAKLPQIALLSSAEIVAEPLGLVLIISSWNFPFGVSLEPLIGAIAAGNVAVLKPSELAPTSSSLLATVLPNYLDNNGIKIIEGGPEIGEQLLHKKWDKIFFTGSARVGRIVMSAAVEHLTPITLELGGKCPALVDSLSTSWDREMAVKRILVAKYGACAGQACIAIDYVLVEKSFSSTLVELMKEGIKKMFGDNPKKSNSIARIVNKQHSNRIKSLLSEPNVKESVVFGGSMHDDDLFMEPTILLDPPLESAIMTEEIFGPVLPIITVEKIEDGIEFINSKPKPLAIYAFTKNKTLQRRLVSETSSGSIVFNDAILQYIADTIPFGGVGECGFGKYHGKFSFDAFSHHKAVARRSYYTDFWFRFPPWNLNKFQLLEEAYNLNYIGILLVLLGLKSSKRSLYEACK