Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene78395.t1 | XP_024642296.1 | 62.9 | 97 | 23 | 1 | 43 | 139 | 842 | 925 | 1.30E-18 | 102.8 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene78395.t1 | A0A396JJ35 | 61.0 | 100 | 23 | 2 | 43 | 139 | 193 | 279 | 1.5e-16 | 95.5 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene052065 | MS.gene78395 | 0.969415 | 4.33E-130 | -1.69E-46 |
MS.gene058580 | MS.gene78395 | 0.850478 | 1.65E-60 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene78395.t1 | MTR_8g005930 | 67.901 | 81 | 22 | 1 | 44 | 124 | 104 | 180 | 6.43e-28 | 102 |
MS.gene78395.t1 | MTR_4g093740 | 63.333 | 60 | 9 | 1 | 43 | 102 | 466 | 512 | 4.89e-15 | 70.9 |
MS.gene78395.t1 | MTR_5g034920 | 67.188 | 64 | 20 | 1 | 75 | 138 | 413 | 475 | 3.79e-13 | 65.5 |
MS.gene78395.t1 | MTR_7g056053 | 54.430 | 79 | 20 | 2 | 63 | 138 | 288 | 353 | 1.20e-11 | 61.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Find 31 sgRNAs with CRISPR-Local
Find 140 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AAAGAATTTGCACACTCTTT+AGG | 0.178653 | 2.3:+5324050 | None:intergenic |
AAGAATTTGCACACTCTTTA+GGG | 0.199120 | 2.3:+5324051 | None:intergenic |
CTCAACAAATCAAGATGTTT+TGG | 0.243154 | 2.3:-5325413 | MS.gene78395:CDS |
ACAAAACTCATTTGACATAT+TGG | 0.248642 | 2.3:-5325371 | MS.gene78395:CDS |
GCAAATTCTTTCTAAACTTT+GGG | 0.254754 | 2.3:-5324038 | MS.gene78395:CDS |
TGCAAATTCTTTCTAAACTT+TGG | 0.269634 | 2.3:-5324039 | MS.gene78395:CDS |
TCCACCTCAATTCTCTTGTC+AGG | 0.281133 | 2.3:+5323977 | None:intergenic |
TTGAGCACGGGTCCTCATTC+CGG | 0.381998 | 2.3:+5323826 | None:intergenic |
CCACCTCAATTCTCTTGTCA+GGG | 0.423175 | 2.3:+5323978 | None:intergenic |
GTATCTCAAAGTCAGATATG+AGG | 0.464590 | 2.3:+5323936 | None:intergenic |
TGAAGTAGAAGAGGTGATGG+AGG | 0.475774 | 2.3:-5324011 | MS.gene78395:CDS |
TGTAGCTGTGAGGACAACTT+TGG | 0.478225 | 2.3:+5323793 | None:intergenic |
CAAGAGAATTGAGGTGGAAG+AGG | 0.492319 | 2.3:-5323972 | MS.gene78395:CDS |
GGATGAAGTAGAAGAGGTGA+TGG | 0.507065 | 2.3:-5324014 | MS.gene78395:CDS |
AAACTCATTTGACATATTGG+TGG | 0.525267 | 2.3:-5325368 | MS.gene78395:CDS |
CAAATTCTTTCTAAACTTTG+GGG | 0.525703 | 2.3:-5324037 | MS.gene78395:CDS |
AATTCTTTCTAAACTTTGGG+GGG | 0.530607 | 2.3:-5324035 | MS.gene78395:CDS |
TGATTTGTTGAGTATGTACA+TGG | 0.541524 | 2.3:+5325424 | None:intergenic |
TCTGCTAGCTTTAACTCAGC+CGG | 0.545712 | 2.3:-5323845 | MS.gene78395:CDS |
CAACCCTGACAAGAGAATTG+AGG | 0.553279 | 2.3:-5323981 | MS.gene78395:CDS |
GCTTTAACTCAGCCGGAATG+AGG | 0.558162 | 2.3:-5323838 | MS.gene78395:CDS |
TTAGCGCTCTCCGATAGACT+TGG | 0.564999 | 2.3:+5323908 | None:intergenic |
TATCTCAAAGTCAGATATGA+GGG | 0.577352 | 2.3:+5323937 | None:intergenic |
AAGTCTATCGGAGAGCGCTA+AGG | 0.582780 | 2.3:-5323906 | MS.gene78395:CDS |
GATACATTATCCAAGTCTAT+CGG | 0.591665 | 2.3:-5323918 | MS.gene78395:CDS |
AAATTCTTTCTAAACTTTGG+GGG | 0.600695 | 2.3:-5324036 | MS.gene78395:CDS |
AGAAGCTCGTGCACAAAGTG+AGG | 0.605104 | 2.3:-5323868 | MS.gene78395:CDS |
CCCTGACAAGAGAATTGAGG+TGG | 0.612053 | 2.3:-5323978 | MS.gene78395:CDS |
GATGTTACTGAGATAGCGGA+AGG | 0.640760 | 2.3:-5325343 | MS.gene78395:intron |
GGATGATGTTACTGAGATAG+CGG | 0.719553 | 2.3:-5325347 | MS.gene78395:CDS |
CCAACTATTCTGTAGCTGTG+AGG | 0.740276 | 2.3:+5323783 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | ATCTATATTCATTTTTAAAA+AGG | + | chr2.3:5324968-5324987 | None:intergenic | 10.0% |
!!! | TCTATATTCATTTTTAAAAA+GGG | + | chr2.3:5324967-5324986 | None:intergenic | 10.0% |
!!! | AAACTAATTTTTTATGTAAG+AGG | + | chr2.3:5324358-5324377 | None:intergenic | 15.0% |
!!! | AAATCAATATATGTTATTTC+TGG | + | chr2.3:5324724-5324743 | None:intergenic | 15.0% |
!!! | AATCAATATATGTTATTTCT+GGG | + | chr2.3:5324723-5324742 | None:intergenic | 15.0% |
!! | AAATTTAAATCAACAAGTAC+AGG | + | chr2.3:5324591-5324610 | None:intergenic | 20.0% |
!! | TAAGTTATTCATTTAACTGA+AGG | - | chr2.3:5324317-5324336 | MS.gene78395:intron | 20.0% |
!!! | AGTTTTGTAAATCAAGATTT+TGG | + | chr2.3:5323884-5323903 | None:intergenic | 20.0% |
!!! | ATTTTTAAAAAGGGTGTTTT+TGG | + | chr2.3:5324958-5324977 | None:intergenic | 20.0% |
!!! | TTTTTTGTTTGTTTGCAAAA+TGG | + | chr2.3:5325040-5325059 | None:intergenic | 20.0% |
! | AAATTCTTTCTAAACTTTGG+GGG | - | chr2.3:5325231-5325250 | MS.gene78395:intron | 25.0% |
! | ACAAAACTCATTTGACATAT+TGG | - | chr2.3:5323896-5323915 | MS.gene78395:CDS | 25.0% |
! | CAAATTCTTTCTAAACTTTG+GGG | - | chr2.3:5325230-5325249 | MS.gene78395:intron | 25.0% |
! | CTATTATTTGCAAATCTGTT+TGG | - | chr2.3:5324460-5324479 | MS.gene78395:intron | 25.0% |
! | GCAAATTCTTTCTAAACTTT+GGG | - | chr2.3:5325229-5325248 | MS.gene78395:intron | 25.0% |
! | TGCAAATAATAGAAAATGTG+TGG | + | chr2.3:5324452-5324471 | None:intergenic | 25.0% |
! | TGCAAATTCTTTCTAAACTT+TGG | - | chr2.3:5325228-5325247 | MS.gene78395:intron | 25.0% |
!!! | AGTTATTTAACTTGTGAATC+TGG | - | chr2.3:5325011-5325030 | MS.gene78395:intron | 25.0% |
AAACTCATTTGACATATTGG+TGG | - | chr2.3:5323899-5323918 | MS.gene78395:CDS | 30.0% | |
AAAGAATTTGCACACTCTTT+AGG | + | chr2.3:5325220-5325239 | None:intergenic | 30.0% | |
AACCTTATCTATGGTAACAT+TGG | + | chr2.3:5324021-5324040 | None:intergenic | 30.0% | |
AAGAATTTGCACACTCTTTA+GGG | + | chr2.3:5325219-5325238 | None:intergenic | 30.0% | |
AATTCTTTCTAAACTTTGGG+GGG | - | chr2.3:5325232-5325251 | MS.gene78395:intron | 30.0% | |
ACCTTATCTATGGTAACATT+GGG | + | chr2.3:5324020-5324039 | None:intergenic | 30.0% | |
AGGATTTGAAAGTAGGAATT+TGG | + | chr2.3:5325178-5325197 | None:intergenic | 30.0% | |
ATTTAACTGAAGGTCAATGT+TGG | - | chr2.3:5324327-5324346 | MS.gene78395:intron | 30.0% | |
CTAGCATAACTAGTAGTTAT+AGG | + | chr2.3:5325128-5325147 | None:intergenic | 30.0% | |
GATACATTATCCAAGTCTAT+CGG | - | chr2.3:5325349-5325368 | MS.gene78395:CDS | 30.0% | |
TAACTAGTAGTTATAGGTTG+AGG | + | chr2.3:5325122-5325141 | None:intergenic | 30.0% | |
TATCTCAAAGTCAGATATGA+GGG | + | chr2.3:5325333-5325352 | None:intergenic | 30.0% | |
TTGCTATCTTATAGATTGTG+AGG | - | chr2.3:5324853-5324872 | MS.gene78395:intron | 30.0% | |
TTTAAATCAACAAGTACAGG+AGG | + | chr2.3:5324588-5324607 | None:intergenic | 30.0% | |
TTTAACTGAAGGTCAATGTT+GGG | - | chr2.3:5324328-5324347 | MS.gene78395:intron | 30.0% | |
! | AAAAAAGTTCTAGTCTCCTA+TGG | - | chr2.3:5325058-5325077 | MS.gene78395:intron | 30.0% |
! | AACTAGTAGTTATAGGTTGA+GGG | + | chr2.3:5325121-5325140 | None:intergenic | 30.0% |
! | ATTTGCAGATTTGGTATTGT+AGG | - | chr2.3:5324534-5324553 | MS.gene78395:intron | 30.0% |
! | CTCAACAAATCAAGATGTTT+TGG | - | chr2.3:5323854-5323873 | MS.gene78395:CDS | 30.0% |
! | TGATGATAGGTGTTTAAAAC+TGG | + | chr2.3:5324107-5324126 | None:intergenic | 30.0% |
! | TTAAAATGACTTGTGTTTGC+AGG | - | chr2.3:5324252-5324271 | MS.gene78395:intron | 30.0% |
! | TTGTGTTGTTGTGTTACATA+AGG | + | chr2.3:5324687-5324706 | None:intergenic | 30.0% |
!! | TGATTTGTTGAGTATGTACA+TGG | + | chr2.3:5323846-5323865 | None:intergenic | 30.0% |
AATTCAAGAAGCTTGAGACA+AGG | + | chr2.3:5324490-5324509 | None:intergenic | 35.0% | |
GTAACATTGGGAGAATTTCT+AGG | + | chr2.3:5324008-5324027 | None:intergenic | 35.0% | |
GTATCTCAAAGTCAGATATG+AGG | + | chr2.3:5325334-5325353 | None:intergenic | 35.0% | |
GTGTATCAGATTTGCAGATT+TGG | - | chr2.3:5324525-5324544 | MS.gene78395:intron | 35.0% | |
GTTTGCAGGTTTGTATACAT+TGG | - | chr2.3:5324266-5324285 | MS.gene78395:intron | 35.0% | |
TCATACATAGATTGTGTGAC+AGG | + | chr2.3:5324131-5324150 | None:intergenic | 35.0% | |
TCCCAATGTTACCATAGATA+AGG | - | chr2.3:5324016-5324035 | MS.gene78395:CDS | 35.0% | |
TCTCAAGCTTCTTGAATTCA+CGG | - | chr2.3:5324492-5324511 | MS.gene78395:intron | 35.0% | |
! | ACTAGTAGTTATAGGTTGAG+GGG | + | chr2.3:5325120-5325139 | None:intergenic | 35.0% |
! | GTCTTTTATACAGTCTCCTA+TGG | + | chr2.3:5324214-5324233 | None:intergenic | 35.0% |
! | TTTAAAACTGGTGATAGCAC+AGG | + | chr2.3:5324095-5324114 | None:intergenic | 35.0% |
!! | AAAGTAGGAATTTGGCTTGA+AGG | + | chr2.3:5325170-5325189 | None:intergenic | 35.0% |
!! | AAGTAGGAATTTGGCTTGAA+GGG | + | chr2.3:5325169-5325188 | None:intergenic | 35.0% |
!! | TGTTATTTCTGGGTTCTACA+TGG | + | chr2.3:5324713-5324732 | None:intergenic | 35.0% |
CTATGGTAGGAGACCTAAAT+AGG | - | chr2.3:5325075-5325094 | MS.gene78395:intron | 40.0% | |
CTATTTAGGTCTCCTACCAT+AGG | + | chr2.3:5325077-5325096 | None:intergenic | 40.0% | |
GGATGATGTTACTGAGATAG+CGG | - | chr2.3:5323920-5323939 | MS.gene78395:CDS | 40.0% | |
GTAATCCAGACAGATCTAGA+TGG | + | chr2.3:5324382-5324401 | None:intergenic | 40.0% | |
TAACTGGATCCAAAGCCTTA+GGG | + | chr2.3:5324049-5324068 | None:intergenic | 40.0% | |
TAATGGTGTTCAAGGAAGAG+AGG | + | chr2.3:5324414-5324433 | None:intergenic | 40.0% | |
TAGAATTTACCTCCAGCAAC+AGG | + | chr2.3:5324295-5324314 | None:intergenic | 40.0% | |
TATACAGTCTCCTATGGTAG+AGG | + | chr2.3:5324208-5324227 | None:intergenic | 40.0% | |
TGGAGAGAGGATTTGAAAGT+AGG | + | chr2.3:5325185-5325204 | None:intergenic | 40.0% | |
TTAACTGGATCCAAAGCCTT+AGG | + | chr2.3:5324050-5324069 | None:intergenic | 40.0% | |
! | AAGTTCTAGTCTCCTATGGT+AGG | - | chr2.3:5325062-5325081 | MS.gene78395:intron | 40.0% |
! | ATACATTGGTAACCTGTTGC+TGG | - | chr2.3:5324280-5324299 | MS.gene78395:intron | 40.0% |
! | CGAAGCTTTAATGGTGTTCA+AGG | + | chr2.3:5324422-5324441 | None:intergenic | 40.0% |
! | GGTGTTCTTCGAAGCTTTAA+TGG | + | chr2.3:5324431-5324450 | None:intergenic | 40.0% |
! | GTTTTCCATCTAGATCTGTC+TGG | - | chr2.3:5324374-5324393 | MS.gene78395:intron | 40.0% |
! | TGCAGATTTGGTATTGTAGG+AGG | - | chr2.3:5324537-5324556 | MS.gene78395:intron | 40.0% |
! | TGGAGTTACTCTTTTGAGCA+CGG | + | chr2.3:5325457-5325476 | None:intergenic | 40.0% |
!! | TAAGGCTTTGGATCCAGTTA+AGG | - | chr2.3:5324049-5324068 | MS.gene78395:CDS | 40.0% |
!!! | AAGGGTGTTTTTGGCATTGA+TGG | + | chr2.3:5324949-5324968 | None:intergenic | 40.0% |
AACTGGATCCAAAGCCTTAG+GGG | + | chr2.3:5324048-5324067 | None:intergenic | 45.0% | |
AGGGACATTGGAACACTTAC+TGG | + | chr2.3:5323805-5323824 | None:intergenic | 45.0% | |
ATCCAGTTAAGGTTGCTGCT+TGG | - | chr2.3:5324060-5324079 | MS.gene78395:intron | 45.0% | |
CAACCCTGACAAGAGAATTG+AGG | - | chr2.3:5325286-5325305 | MS.gene78395:intron | 45.0% | |
CAAGAGAATTGAGGTGGAAG+AGG | - | chr2.3:5325295-5325314 | MS.gene78395:intron | 45.0% | |
CAAGCTTCTTGAATTCACGG+TGG | - | chr2.3:5324495-5324514 | MS.gene78395:intron | 45.0% | |
CCACCTCAATTCTCTTGTCA+GGG | + | chr2.3:5325292-5325311 | None:intergenic | 45.0% | |
GGATGAAGTAGAAGAGGTGA+TGG | - | chr2.3:5325253-5325272 | MS.gene78395:intron | 45.0% | |
GGGACATTGGAACACTTACT+GGG | + | chr2.3:5323804-5323823 | None:intergenic | 45.0% | |
GTGAATAGGTCCTCTACCAT+AGG | - | chr2.3:5324195-5324214 | MS.gene78395:intron | 45.0% | |
GTGTTCCAATGTCCCTGTTA+AGG | - | chr2.3:5323809-5323828 | MS.gene78395:CDS | 45.0% | |
TCCACCTCAATTCTCTTGTC+AGG | + | chr2.3:5325293-5325312 | None:intergenic | 45.0% | |
TGTAGCTGTGAGGACAACTT+TGG | + | chr2.3:5325477-5325496 | None:intergenic | 45.0% | |
TGTAGGAGGTCGTGATTCTT+TGG | - | chr2.3:5324551-5324570 | MS.gene78395:intron | 45.0% | |
TTAGGGTAGGAGAGGTGAAT+AGG | - | chr2.3:5324181-5324200 | MS.gene78395:intron | 45.0% | |
TTGTGTGACAGGCTGATGAT+AGG | + | chr2.3:5324120-5324139 | None:intergenic | 45.0% | |
! | AGTTATAGGTTGAGGGGCAA+AGG | + | chr2.3:5325114-5325133 | None:intergenic | 45.0% |
! | GAGGCTTTGCTTGGTGATTT+GGG | - | chr2.3:5323948-5323967 | MS.gene78395:CDS | 45.0% |
! | GCTTGGTGATTTGGGTACAT+TGG | - | chr2.3:5323956-5323975 | MS.gene78395:CDS | 45.0% |
! | GGAGTTACTCTTTTGAGCAC+GGG | + | chr2.3:5325456-5325475 | None:intergenic | 45.0% |
! | TCCAGTTAAGGTTGCTGCTT+GGG | - | chr2.3:5324061-5324080 | MS.gene78395:intron | 45.0% |
! | TGAAGTAGAAGAGGTGATGG+AGG | - | chr2.3:5325256-5325275 | MS.gene78395:intron | 45.0% |
! | TGAGCTTGTATGAGCTTGCT+GGG | - | chr2.3:5324907-5324926 | MS.gene78395:intron | 45.0% |
! | TGAGGCTTTGCTTGGTGATT+TGG | - | chr2.3:5323947-5323966 | MS.gene78395:CDS | 45.0% |
! | TGGTGATTTGGGTACATTGG+AGG | - | chr2.3:5323959-5323978 | MS.gene78395:CDS | 45.0% |
!! | GATGTTACTGAGATAGCGGA+AGG | - | chr2.3:5323924-5323943 | MS.gene78395:CDS | 45.0% |
!! | TCTGCTAGCTTTAACTCAGC+CGG | - | chr2.3:5325422-5325441 | MS.gene78395:CDS | 45.0% |
AACTGGTGATAGCACAGGAG+TGG | + | chr2.3:5324090-5324109 | None:intergenic | 50.0% | |
ACCCAAGCAGCAACCTTAAC+TGG | + | chr2.3:5324065-5324084 | None:intergenic | 50.0% | |
AGAAGCTCGTGCACAAAGTG+AGG | - | chr2.3:5325399-5325418 | MS.gene78395:CDS | 50.0% | |
AGATAAGGTTGCTGCCCCTA+AGG | - | chr2.3:5324031-5324050 | MS.gene78395:CDS | 50.0% | |
AGGAGGTCGTGATTCTTTGG+TGG | - | chr2.3:5324554-5324573 | MS.gene78395:intron | 50.0% | |
AGGGGCAGCAACCTTATCTA+TGG | + | chr2.3:5324030-5324049 | None:intergenic | 50.0% | |
CCCTGACAAGAGAATTGAGG+TGG | - | chr2.3:5325289-5325308 | MS.gene78395:intron | 50.0% | |
CCTCAACCTGGTGGCATTTA+GGG | - | chr2.3:5324164-5324183 | MS.gene78395:intron | 50.0% | |
CTACGGTGGGAGACCTATTT+AGG | + | chr2.3:5325091-5325110 | None:intergenic | 50.0% | |
GCTCATACAAGCTCACGTGT+TGG | + | chr2.3:5324902-5324921 | None:intergenic | 50.0% | |
GCTTTAACTCAGCCGGAATG+AGG | - | chr2.3:5325429-5325448 | MS.gene78395:CDS | 50.0% | |
GGTACATTGGAGGTTCCTAC+TGG | - | chr2.3:5323969-5323988 | MS.gene78395:CDS | 50.0% | |
GTGAGCTTGTATGAGCTTGC+TGG | - | chr2.3:5324906-5324925 | MS.gene78395:intron | 50.0% | |
TGCAGCCTTAACAGGGACAT+TGG | + | chr2.3:5323817-5323836 | None:intergenic | 50.0% | |
TTAGCGCTCTCCGATAGACT+TGG | + | chr2.3:5325362-5325381 | None:intergenic | 50.0% | |
TTGGGGGGATGAAGTAGAAG+AGG | - | chr2.3:5325247-5325266 | MS.gene78395:intron | 50.0% | |
! | AACCTGGTGGCATTTAGGGT+AGG | - | chr2.3:5324168-5324187 | MS.gene78395:intron | 50.0% |
! | CATTGGTAACCTGTTGCTGG+AGG | - | chr2.3:5324283-5324302 | MS.gene78395:intron | 50.0% |
!! | AAGTCTATCGGAGAGCGCTA+AGG | - | chr2.3:5325361-5325380 | MS.gene78395:CDS | 50.0% |
!! | TACTGAGATAGCGGAAGGTG+AGG | - | chr2.3:5323929-5323948 | MS.gene78395:CDS | 50.0% |
!! | TCTTTAGGGCTGCAGCAGAA+TGG | + | chr2.3:5325205-5325224 | None:intergenic | 50.0% |
AGGTTGAGGGGCAAAGGCTA+CGG | + | chr2.3:5325108-5325127 | None:intergenic | 55.0% | |
CCCTAAATGCCACCAGGTTG+AGG | + | chr2.3:5324167-5324186 | None:intergenic | 55.0% | |
CTCCTACCCTAAATGCCACC+AGG | + | chr2.3:5324173-5324192 | None:intergenic | 55.0% | |
GAGCAGCTGCAGCCTTAACA+GGG | + | chr2.3:5323824-5323843 | None:intergenic | 55.0% | |
GCCTCAACCTGGTGGCATTT+AGG | - | chr2.3:5324163-5324182 | MS.gene78395:intron | 55.0% | |
GGCGCATCATGCAAACCAGT+AGG | + | chr2.3:5323987-5324006 | None:intergenic | 55.0% | |
TTGAGCACGGGTCCTCATTC+CGG | + | chr2.3:5325444-5325463 | None:intergenic | 55.0% | |
! | ACCAGGTTGAGGCATAGGAG+CGG | + | chr2.3:5324156-5324175 | None:intergenic | 55.0% |
! | ATGCCACCAGGTTGAGGCAT+AGG | + | chr2.3:5324161-5324180 | None:intergenic | 55.0% |
! | GGTGGCATTTAGGGTAGGAG+AGG | - | chr2.3:5324173-5324192 | MS.gene78395:intron | 55.0% |
ACCGCTCCTATGCCTCAACC+TGG | - | chr2.3:5324152-5324171 | MS.gene78395:intron | 60.0% | |
GCGGAAGGTGAGGCTTTGCT+TGG | - | chr2.3:5323939-5323958 | MS.gene78395:CDS | 60.0% | |
GCTCCTATGCCTCAACCTGG+TGG | - | chr2.3:5324155-5324174 | MS.gene78395:intron | 60.0% | |
GGAGCAGCTGCAGCCTTAAC+AGG | + | chr2.3:5323825-5323844 | None:intergenic | 60.0% | |
GGCTGCAGCAGAATGGAGAG+AGG | + | chr2.3:5325198-5325217 | None:intergenic | 60.0% | |
GGTTGCTGCCCCTAAGGCTT+TGG | - | chr2.3:5324037-5324056 | MS.gene78395:CDS | 60.0% | |
TGAGGGGCAAAGGCTACGGT+GGG | + | chr2.3:5325104-5325123 | None:intergenic | 60.0% | |
TTGAGGGGCAAAGGCTACGG+TGG | + | chr2.3:5325105-5325124 | None:intergenic | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2.3 | gene | 5323787 | 5325502 | 5323787 | ID=MS.gene78395 |
chr2.3 | mRNA | 5323787 | 5325502 | 5323787 | ID=MS.gene78395.t1;Parent=MS.gene78395 |
chr2.3 | exon | 5325485 | 5325502 | 5325485 | ID=MS.gene78395.t1.exon1;Parent=MS.gene78395.t1 |
chr2.3 | CDS | 5325485 | 5325502 | 5325485 | ID=cds.MS.gene78395.t1;Parent=MS.gene78395.t1 |
chr2.3 | exon | 5325344 | 5325458 | 5325344 | ID=MS.gene78395.t1.exon2;Parent=MS.gene78395.t1 |
chr2.3 | CDS | 5325344 | 5325458 | 5325344 | ID=cds.MS.gene78395.t1;Parent=MS.gene78395.t1 |
chr2.3 | exon | 5323787 | 5324073 | 5323787 | ID=MS.gene78395.t1.exon3;Parent=MS.gene78395.t1 |
chr2.3 | CDS | 5323787 | 5324073 | 5323787 | ID=cds.MS.gene78395.t1;Parent=MS.gene78395.t1 |
Gene Sequence |
Protein sequence |