Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene058580.t1 | XP_003624206.1 | 75.8 | 132 | 30 | 2 | 1 | 132 | 1 | 130 | 2.30E-46 | 195.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene058580.t1 | O80800 | 63.2 | 125 | 39 | 3 | 10 | 132 | 7 | 126 | 8.5e-34 | 145.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene058580.t1 | B7FLI7 | 75.8 | 132 | 30 | 2 | 1 | 132 | 1 | 130 | 1.6e-46 | 195.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene052065 | MS.gene058580 | 0.875319 | 3.38E-68 | -1.69E-46 |
| MS.gene058580 | MS.gene063846 | 0.832301 | 1.02E-55 | -1.69E-46 |
| MS.gene058580 | MS.gene064192 | 0.803432 | 3.50E-49 | -1.69E-46 |
| MS.gene058580 | MS.gene066752 | 0.815492 | 8.99E-52 | -1.69E-46 |
| MS.gene058580 | MS.gene069271 | 0.810174 | 1.31E-50 | -1.69E-46 |
| MS.gene058580 | MS.gene20657 | 0.827338 | 1.65E-54 | -1.69E-46 |
| MS.gene058580 | MS.gene24211 | 0.829169 | 5.98E-55 | -1.69E-46 |
| MS.gene058580 | MS.gene27127 | 0.808375 | 3.19E-50 | -1.69E-46 |
| MS.gene058580 | MS.gene27720 | 0.802063 | 6.70E-49 | -1.69E-46 |
| MS.gene058580 | MS.gene28203 | 0.802853 | 4.61E-49 | -1.69E-46 |
| MS.gene058580 | MS.gene30139 | 0.824639 | 7.24E-54 | -1.69E-46 |
| MS.gene058580 | MS.gene30580 | 0.813494 | 2.49E-51 | -1.69E-46 |
| MS.gene058580 | MS.gene34615 | 0.812581 | 3.95E-51 | -1.69E-46 |
| MS.gene058580 | MS.gene38444 | 0.821473 | 3.96E-53 | -1.69E-46 |
| MS.gene058580 | MS.gene38850 | 0.818265 | 2.15E-52 | -1.69E-46 |
| MS.gene058580 | MS.gene42887 | 0.821169 | 4.66E-53 | -1.69E-46 |
| MS.gene058580 | MS.gene42891 | 0.820201 | 7.77E-53 | -1.69E-46 |
| MS.gene058580 | MS.gene54921 | 0.810329 | 1.22E-50 | -1.69E-46 |
| MS.gene058580 | MS.gene55257 | 0.811325 | 7.41E-51 | -1.69E-46 |
| MS.gene058580 | MS.gene59780 | 0.810547 | 1.09E-50 | -1.69E-46 |
| MS.gene058580 | MS.gene61898 | 0.825438 | 4.69E-54 | -1.69E-46 |
| MS.gene058580 | MS.gene62748 | 0.808196 | 3.49E-50 | -1.69E-46 |
| MS.gene058580 | MS.gene63141 | 0.801295 | 9.63E-49 | -1.69E-46 |
| MS.gene058580 | MS.gene63142 | 0.83193 | 1.26E-55 | -1.69E-46 |
| MS.gene058580 | MS.gene67182 | 0.807148 | 5.82E-50 | -1.69E-46 |
| MS.gene058580 | MS.gene73540 | 0.823773 | 1.16E-53 | -1.69E-46 |
| MS.gene058580 | MS.gene76612 | 0.821708 | 3.50E-53 | -1.69E-46 |
| MS.gene058580 | MS.gene78395 | 0.850478 | 1.65E-60 | -1.69E-46 |
| MS.gene058580 | MS.gene79824 | 0.809549 | 1.79E-50 | -1.69E-46 |
| MS.gene058580 | MS.gene82663 | 0.802589 | 5.22E-49 | -1.69E-46 |
| MS.gene058580 | MS.gene82668 | 0.806625 | 7.51E-50 | -1.69E-46 |
| MS.gene058580 | MS.gene82669 | 0.830821 | 2.37E-55 | -1.69E-46 |
| MS.gene058580 | MS.gene82682 | 0.822959 | 1.79E-53 | -1.69E-46 |
| MS.gene058580 | MS.gene83655 | 0.803599 | 3.23E-49 | -1.69E-46 |
| MS.gene058580 | MS.gene84968 | 0.823916 | 1.07E-53 | -1.69E-46 |
| MS.gene058580 | MS.gene91451 | 0.807705 | 4.44E-50 | -1.69E-46 |
| MS.gene058580 | MS.gene96533 | 0.801871 | 7.34E-49 | -1.69E-46 |
| MS.gene058580 | MS.gene98550 | 0.816331 | 5.84E-52 | -1.69E-46 |
| MS.gene058580 | MS.gene98673 | 0.819555 | 1.09E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene43422 | MS.gene058580 | PPI |
| MS.gene042091 | MS.gene058580 | PPI |
| MS.gene012735 | MS.gene058580 | PPI |
| MS.gene95103 | MS.gene058580 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene058580.t1 | MTR_7g080390 | 75.758 | 132 | 30 | 2 | 1 | 132 | 1 | 130 | 1.08e-66 | 201 |
| MS.gene058580.t1 | MTR_7g080390 | 70.526 | 95 | 28 | 0 | 123 | 217 | 36 | 130 | 6.39e-42 | 139 |
| MS.gene058580.t1 | MTR_7g080760 | 45.946 | 111 | 55 | 1 | 106 | 216 | 13 | 118 | 2.74e-25 | 95.9 |
| MS.gene058580.t1 | MTR_7g080760 | 50.000 | 102 | 48 | 2 | 27 | 127 | 16 | 115 | 1.93e-24 | 93.6 |
| MS.gene058580.t1 | MTR_4g133928 | 47.368 | 76 | 40 | 0 | 55 | 130 | 47 | 122 | 1.10e-16 | 73.6 |
| MS.gene058580.t1 | MTR_4g133928 | 44.156 | 77 | 43 | 0 | 141 | 217 | 47 | 123 | 9.81e-15 | 68.6 |
| MS.gene058580.t1 | MTR_0446s0010 | 53.571 | 56 | 26 | 0 | 55 | 110 | 47 | 102 | 3.55e-12 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene058580.t1 | AT1G65290 | 61.194 | 134 | 42 | 4 | 1 | 132 | 1 | 126 | 3.88e-46 | 149 |
| MS.gene058580.t1 | AT1G65290 | 68.182 | 88 | 28 | 0 | 130 | 217 | 39 | 126 | 4.72e-37 | 126 |
| MS.gene058580.t1 | AT2G44620 | 43.697 | 119 | 61 | 3 | 9 | 127 | 6 | 118 | 6.37e-23 | 89.7 |
| MS.gene058580.t1 | AT2G44620 | 50.617 | 81 | 40 | 0 | 136 | 216 | 41 | 121 | 3.75e-22 | 87.8 |
| MS.gene058580.t1 | AT5G47630 | 34.483 | 116 | 72 | 2 | 14 | 129 | 14 | 125 | 4.46e-14 | 67.0 |
| MS.gene058580.t1 | AT5G47630 | 39.744 | 78 | 47 | 0 | 140 | 217 | 50 | 127 | 1.18e-11 | 60.5 |
| MS.gene058580.t1 | AT5G47630 | 34.483 | 116 | 72 | 2 | 14 | 129 | 14 | 125 | 4.46e-14 | 67.0 |
| MS.gene058580.t1 | AT5G47630 | 39.744 | 78 | 47 | 0 | 140 | 217 | 50 | 127 | 1.18e-11 | 60.5 |
| MS.gene058580.t1 | AT5G47630 | 34.483 | 116 | 72 | 2 | 14 | 129 | 14 | 125 | 4.46e-14 | 67.0 |
| MS.gene058580.t1 | AT5G47630 | 39.744 | 78 | 47 | 0 | 140 | 217 | 50 | 127 | 1.18e-11 | 60.5 |
Find 45 sgRNAs with CRISPR-Local
Find 99 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAGCGACGAAGAGAGAAAT+TGG | 0.280134 | 4.4:+1583891 | None:intergenic |
| TGACAAAGTTGATCCTTCTA+AGG | 0.306760 | 4.4:-1582706 | MS.gene058580:intron |
| TGACAAAGTTGATCCTTCTA+AGG | 0.306760 | 4.4:-1583794 | MS.gene058580:intron |
| AGGGATCTTGATACAGAGTT+TGG | 0.311699 | 4.4:-1582098 | MS.gene058580:CDS |
| ATGGATCTTGATACAGAGTT+TGG | 0.311699 | 4.4:-1582975 | MS.gene058580:CDS |
| GGCGGGTCGGAGAAGCGGTT+TGG | 0.336744 | 4.4:-1583989 | MS.gene058580:CDS |
| GCGGGTCGGAGAAGCGGTTT+GGG | 0.346655 | 4.4:-1583988 | MS.gene058580:CDS |
| AAGCATCAACATGAACTCTT+AGG | 0.374259 | 4.4:+1583953 | None:intergenic |
| ATTGAAGTGAAAACCTTAGA+AGG | 0.402828 | 4.4:+1582693 | None:intergenic |
| ATTGAAGTGAAAACCTTAGA+AGG | 0.402828 | 4.4:+1583781 | None:intergenic |
| GAAATCAACAGCTTGATTAA+CGG | 0.409809 | 4.4:+1582037 | None:intergenic |
| GAAATCAACAGCTTGATTAA+CGG | 0.409809 | 4.4:+1582914 | None:intergenic |
| AAGATCCCTACAGATCTCTA+TGG | 0.425955 | 4.4:+1582112 | None:intergenic |
| AAGATCCATACAGATCTCTA+TGG | 0.455038 | 4.4:+1582989 | None:intergenic |
| TTTCTACGACGACCTTGGAT+TGG | 0.465894 | 4.4:-1582147 | MS.gene058580:CDS |
| TTTCTACGACGACCTTGGAT+TGG | 0.465894 | 4.4:-1583024 | MS.gene058580:CDS |
| GTCGCTTCAGCCAAGAGGTT+AGG | 0.467143 | 4.4:-1583876 | MS.gene058580:CDS |
| GAAGAATGCGCAAAGGAGAT+TGG | 0.473510 | 4.4:+1583914 | None:intergenic |
| TTTCATTGCATCTCATCCTC+AGG | 0.474149 | 4.4:-1582018 | MS.gene058580:CDS |
| CGTCGTAGAAATGAGCAGTT+GGG | 0.474275 | 4.4:+1582159 | None:intergenic |
| CGTCGTAGAAATGAGCAGTT+GGG | 0.474275 | 4.4:+1583036 | None:intergenic |
| CATTGCATCTCATCATCCTC+AGG | 0.499780 | 4.4:-1582892 | MS.gene058580:CDS |
| GCTCATTTCTACGACGACCT+TGG | 0.506373 | 4.4:-1582152 | MS.gene058580:CDS |
| GCTCATTTCTACGACGACCT+TGG | 0.506373 | 4.4:-1583029 | MS.gene058580:CDS |
| GAAAAGTTGTCCTAACCTCT+TGG | 0.513436 | 4.4:+1583866 | None:intergenic |
| TAGATGCCATAGAGATCTGT+AGG | 0.518201 | 4.4:-1582118 | MS.gene058580:CDS |
| ATATATCGATCAACAATGGC+GGG | 0.521990 | 4.4:-1584006 | None:intergenic |
| AAGCGACGAAGAGAGAAATT+GGG | 0.522280 | 4.4:+1583892 | None:intergenic |
| ATCGATCAACAATGGCGGGT+CGG | 0.546544 | 4.4:-1584002 | None:intergenic |
| AGATGCCATAGAGATCTGTA+TGG | 0.557129 | 4.4:-1582994 | MS.gene058580:CDS |
| TCGTCGTAGAAATGAGCAGT+TGG | 0.570386 | 4.4:+1582158 | None:intergenic |
| TCGTCGTAGAAATGAGCAGT+TGG | 0.570386 | 4.4:+1583035 | None:intergenic |
| ACAATGGCGGGTCGGAGAAG+CGG | 0.584883 | 4.4:-1583994 | MS.gene058580:CDS |
| CATCTAAACTATCCAATCCA+AGG | 0.607628 | 4.4:+1582135 | None:intergenic |
| CATCTAAACTATCCAATCCA+AGG | 0.607628 | 4.4:+1583012 | None:intergenic |
| TCTTCGTCGCTTCAGCCAAG+AGG | 0.609459 | 4.4:-1583881 | MS.gene058580:CDS |
| GAATGCGCAAAGGAGATTGG+TGG | 0.622727 | 4.4:+1583917 | None:intergenic |
| AGGTTTGACTACTTCGCCTG+AGG | 0.632082 | 4.4:+1582002 | None:intergenic |
| AGGTTTGACTACTTCGCCTG+AGG | 0.632082 | 4.4:+1582876 | None:intergenic |
| CAACAGCTTGATTAACGGAG+AGG | 0.651035 | 4.4:+1582042 | None:intergenic |
| CAACAGCTTGATTAACGGAG+AGG | 0.651035 | 4.4:+1582919 | None:intergenic |
| AGATGCCATAGAGATCTGTA+GGG | 0.663178 | 4.4:-1582117 | MS.gene058580:CDS |
| AAATTGGGAAGAATGCGCAA+AGG | 0.685653 | 4.4:+1583907 | None:intergenic |
| GTCGTAGAAATGAGCAGTTG+GGG | 0.707088 | 4.4:+1582160 | None:intergenic |
| GTCGTAGAAATGAGCAGTTG+GGG | 0.707088 | 4.4:+1583037 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATATGACCTAAATAAATAT+TGG | + | chr4.4:1583380-1583399 | None:intergenic | 15.0% |
| !! | GAAAATAAATGAAGAAATTA+GGG | + | chr4.4:1582251-1582270 | None:intergenic | 15.0% |
| !! | GAAATAAGTTTAAACATTTA+CGG | - | chr4.4:1583578-1583597 | MS.gene058580:intron | 15.0% |
| !! | TGAAAATAAATGAAGAAATT+AGG | + | chr4.4:1582252-1582271 | None:intergenic | 15.0% |
| !! | AACATAAGCCAAAAATATAA+TGG | + | chr4.4:1582899-1582918 | None:intergenic | 20.0% |
| !! | CAAAAAATGTCTTAAAATTG+TGG | + | chr4.4:1583205-1583224 | None:intergenic | 20.0% |
| !! | TAAATGAAGAAATTAGGTTA+AGG | + | chr4.4:1582246-1582265 | None:intergenic | 20.0% |
| !! | TCGATTTCCAATATTTATTT+AGG | - | chr4.4:1583370-1583389 | MS.gene058580:intron | 20.0% |
| !!! | TTTCCAATCTTTCTTTATTT+AGG | - | chr4.4:1582291-1582310 | MS.gene058580:intron | 20.0% |
| ! | GAGATCAGTTTAAACATTTA+CGG | - | chr4.4:1582700-1582719 | MS.gene058580:intron | 25.0% |
| ! | GTTTATCTAAGCTTATTTAC+TGG | + | chr4.4:1582781-1582800 | None:intergenic | 25.0% |
| ! | TAGCAATGTTAAAAAAAGGT+CGG | + | chr4.4:1582337-1582356 | None:intergenic | 25.0% |
| ! | TGACCTAAATAAAGAAAGAT+TGG | + | chr4.4:1582297-1582316 | None:intergenic | 25.0% |
| !!! | CTTCACTTAGCTTTAAAAAA+CGG | + | chr4.4:1583433-1583452 | None:intergenic | 25.0% |
| !!! | TTAAGTTGTCTTTTCAAACA+TGG | + | chr4.4:1583478-1583497 | None:intergenic | 25.0% |
| !!! | TTTGTGTGCCATTATATTTT+TGG | - | chr4.4:1582888-1582907 | MS.gene058580:CDS | 25.0% |
| !!! | TTTTAAGACATTTTTTGCCT+TGG | - | chr4.4:1583208-1583227 | MS.gene058580:intron | 25.0% |
| ACTGTGTACAATATACCAAA+CGG | - | chr4.4:1582472-1582491 | MS.gene058580:intron | 30.0% | |
| AGCAATGTTAAAAAAAGGTC+GGG | + | chr4.4:1582336-1582355 | None:intergenic | 30.0% | |
| ATTGAAGTGAAAACCTTAGA+AGG | + | chr4.4:1582223-1582242 | None:intergenic | 30.0% | |
| CTTGTATGAAGCTAAGTATA+AGG | - | chr4.4:1582390-1582409 | MS.gene058580:intron | 30.0% | |
| GAAATCAACAGCTTGATTAA+CGG | + | chr4.4:1583090-1583109 | None:intergenic | 30.0% | |
| TACTTAGCTTCATACAAGAT+TGG | + | chr4.4:1582388-1582407 | None:intergenic | 30.0% | |
| TGCGTAGCAATGTTAAAAAA+AGG | + | chr4.4:1582341-1582360 | None:intergenic | 30.0% | |
| TTATTTCCATATAAGCTCCT+AGG | + | chr4.4:1583565-1583584 | None:intergenic | 30.0% | |
| ! | ATCTTGTCTACTTCATTTTC+AGG | + | chr4.4:1583062-1583081 | None:intergenic | 30.0% |
| ! | CGCTGCTTTATAATAAAGAA+AGG | + | chr4.4:1583173-1583192 | None:intergenic | 30.0% |
| ! | GACAACTTTTCTTGACAAAT+CGG | - | chr4.4:1582147-1582166 | MS.gene058580:CDS | 30.0% |
| ! | GAGAACTTTTCTCGATAAAT+CGG | - | chr4.4:1583235-1583254 | MS.gene058580:intron | 30.0% |
| ! | TAGTCAAACTGTTTTCATGT+AGG | - | chr4.4:1582637-1582656 | MS.gene058580:intron | 30.0% |
| ! | TTAAGTTGTCTTTCCAAACA+TGG | + | chr4.4:1582575-1582594 | None:intergenic | 30.0% |
| !!! | TTAATGTGCTTGTGTCATTT+TGG | - | chr4.4:1582841-1582860 | MS.gene058580:intron | 30.0% |
| !!! | TTTGTCAAATTTTTTGACGC+AGG | + | chr4.4:1582194-1582213 | None:intergenic | 30.0% |
| AAGATCCATACAGATCTCTA+TGG | + | chr4.4:1583015-1583034 | None:intergenic | 35.0% | |
| AAGCATCAACATGAACTCTT+AGG | + | chr4.4:1582051-1582070 | None:intergenic | 35.0% | |
| ATATAATGGCACACAAATGC+TGG | + | chr4.4:1582885-1582904 | None:intergenic | 35.0% | |
| ATGGATCTTGATACAGAGTT+TGG | - | chr4.4:1583026-1583045 | MS.gene058580:CDS | 35.0% | |
| CATCTAAACTATCCAATCCA+AGG | + | chr4.4:1582992-1583011 | None:intergenic | 35.0% | |
| GCAATGTTAAAAAAAGGTCG+GGG | + | chr4.4:1582335-1582354 | None:intergenic | 35.0% | |
| GGATAGCTTATGAAAACAGT+TGG | + | chr4.4:1583544-1583563 | None:intergenic | 35.0% | |
| ! | AAATTTACAGCTAGCCTCAT+AGG | + | chr4.4:1583148-1583167 | None:intergenic | 35.0% |
| ! | AACTTTTCTCGATAAATCGG+AGG | - | chr4.4:1583238-1583257 | MS.gene058580:intron | 35.0% |
| ! | AACTTTTCTTGACAAATCGG+AGG | - | chr4.4:1582150-1582169 | MS.gene058580:CDS | 35.0% |
| ! | CTGTTTTCATAAGCTATCCT+AGG | - | chr4.4:1583545-1583564 | MS.gene058580:intron | 35.0% |
| ! | GCTAAGAGAAGACTGTATTT+TGG | - | chr4.4:1582539-1582558 | MS.gene058580:intron | 35.0% |
| ! | TGACAAAGTTGATCCTTCTA+AGG | - | chr4.4:1582207-1582226 | MS.gene058580:intron | 35.0% |
| !! | AAGAGAAGACTGTATTTTGG+AGG | - | chr4.4:1582542-1582561 | MS.gene058580:intron | 35.0% |
| !! | AGGTTCTAGTCTTGGAAATA+GGG | - | chr4.4:1582445-1582464 | MS.gene058580:intron | 35.0% |
| !!! | TTAATGTGCTTGTGTCGTTT+TGG | - | chr4.4:1583718-1583737 | MS.gene058580:intron | 35.0% |
| AAATTGGGAAGAATGCGCAA+AGG | + | chr4.4:1582097-1582116 | None:intergenic | 40.0% | |
| AAGATCCCTACAGATCTCTA+TGG | + | chr4.4:1583892-1583911 | None:intergenic | 40.0% | |
| AAGCGACGAAGAGAGAAATT+GGG | + | chr4.4:1582112-1582131 | None:intergenic | 40.0% | |
| AAGTGAAGACTGTACTTTGG+AGG | - | chr4.4:1583445-1583464 | MS.gene058580:intron | 40.0% | |
| AGATGCCATAGAGATCTGTA+GGG | - | chr4.4:1583007-1583026 | MS.gene058580:CDS | 40.0% | |
| AGATGCCATAGAGATCTGTA+TGG | - | chr4.4:1583007-1583026 | MS.gene058580:CDS | 40.0% | |
| AGCTATCCTAGGAGCTTATA+TGG | - | chr4.4:1583556-1583575 | MS.gene058580:intron | 40.0% | |
| AGCTATCCTAGGATAGCTTA+TGG | - | chr4.4:1582678-1582697 | MS.gene058580:intron | 40.0% | |
| AGGGATCTTGATACAGAGTT+TGG | - | chr4.4:1583903-1583922 | MS.gene058580:CDS | 40.0% | |
| CTGTCTTCATAAGCTATCCT+AGG | - | chr4.4:1582667-1582686 | MS.gene058580:intron | 40.0% | |
| GAAAAGTTGTCCTAACCTCT+TGG | + | chr4.4:1582138-1582157 | None:intergenic | 40.0% | |
| GCTAAGTGAAGACTGTACTT+TGG | - | chr4.4:1583442-1583461 | MS.gene058580:intron | 40.0% | |
| TAAAAAACGGCGATGCAAGA+AGG | + | chr4.4:1583420-1583439 | None:intergenic | 40.0% | |
| TAAAGTGCAAGTCTACACTG+AGG | + | chr4.4:1582817-1582836 | None:intergenic | 40.0% | |
| TAAAGTGCAAGTCTAGACTG+AGG | + | chr4.4:1583694-1583713 | None:intergenic | 40.0% | |
| TAGATGCCATAGAGATCTGT+AGG | - | chr4.4:1583006-1583025 | MS.gene058580:CDS | 40.0% | |
| TGATCTCCATAAGCTATCCT+AGG | + | chr4.4:1582687-1582706 | None:intergenic | 40.0% | |
| TGGAGGATTAAGACCATGTT+TGG | - | chr4.4:1582559-1582578 | MS.gene058580:intron | 40.0% | |
| TTTCATTGCATCTCATCCTC+AGG | - | chr4.4:1583983-1584002 | MS.gene058580:CDS | 40.0% | |
| ! | TGACAAAAGCAAAGAAGCAC+AGG | + | chr4.4:1582939-1582958 | None:intergenic | 40.0% |
| !! | CAGGTTCTAGTCTTGGAAAT+AGG | - | chr4.4:1582444-1582463 | MS.gene058580:intron | 40.0% |
| !! | TGTGCTTCTTTGCTTTTGTC+AGG | - | chr4.4:1582938-1582957 | MS.gene058580:CDS | 40.0% |
| !!! | AGACATTTTTTGCCTTGGTC+AGG | - | chr4.4:1583213-1583232 | MS.gene058580:intron | 40.0% |
| CAACAGCTTGATTAACGGAG+AGG | + | chr4.4:1583085-1583104 | None:intergenic | 45.0% | |
| CATTGCATCTCATCATCCTC+AGG | - | chr4.4:1583109-1583128 | MS.gene058580:intron | 45.0% | |
| CGTCGTAGAAATGAGCAGTT+GGG | + | chr4.4:1582968-1582987 | None:intergenic | 45.0% | |
| GAAGAATGCGCAAAGGAGAT+TGG | + | chr4.4:1582090-1582109 | None:intergenic | 45.0% | |
| GAAGCGACGAAGAGAGAAAT+TGG | + | chr4.4:1582113-1582132 | None:intergenic | 45.0% | |
| GACTAGAACCTGTGACCTTT+CGG | + | chr4.4:1582436-1582455 | None:intergenic | 45.0% | |
| GAGAAAAGTTCTCCTGACCA+AGG | + | chr4.4:1583228-1583247 | None:intergenic | 45.0% | |
| GCGAAGTAGTCAAACCTATG+AGG | - | chr4.4:1583131-1583150 | MS.gene058580:intron | 45.0% | |
| GTCGTAGAAATGAGCAGTTG+GGG | + | chr4.4:1582967-1582986 | None:intergenic | 45.0% | |
| TCGTCGTAGAAATGAGCAGT+TGG | + | chr4.4:1582969-1582988 | None:intergenic | 45.0% | |
| TTTCTACGACGACCTTGGAT+TGG | - | chr4.4:1582977-1582996 | MS.gene058580:CDS | 45.0% | |
| ! | AAGGTCACAGGTTCTAGTCT+TGG | - | chr4.4:1582437-1582456 | MS.gene058580:intron | 45.0% |
| AGGTTTGACTACTTCGCCTG+AGG | + | chr4.4:1583128-1583147 | None:intergenic | 50.0% | |
| GAATGCGCAAAGGAGATTGG+TGG | + | chr4.4:1582087-1582106 | None:intergenic | 50.0% | |
| GCTCATTTCTACGACGACCT+TGG | - | chr4.4:1582972-1582991 | MS.gene058580:CDS | 50.0% | |
| GTCTACACTGAGGCTCTGTT+TGG | + | chr4.4:1582807-1582826 | None:intergenic | 50.0% | |
| GTCTAGACTGAGGCTCTGTT+TGG | + | chr4.4:1583684-1583703 | None:intergenic | 50.0% | |
| GTTGTTGTCACGTGACCGAA+AGG | - | chr4.4:1582418-1582437 | MS.gene058580:intron | 50.0% | |
| ACGGCGATGCAAGAAGGTTG+AGG | + | chr4.4:1583414-1583433 | None:intergenic | 55.0% | |
| AGCTACTGCATCGCACCGTT+TGG | + | chr4.4:1582490-1582509 | None:intergenic | 55.0% | |
| GGCACACAAATGCTGGCAGA+GGG | + | chr4.4:1582878-1582897 | None:intergenic | 55.0% | |
| GTCGCTTCAGCCAAGAGGTT+AGG | - | chr4.4:1582125-1582144 | MS.gene058580:CDS | 55.0% | |
| TCACGTGACCGAAAGGTCAC+AGG | - | chr4.4:1582425-1582444 | MS.gene058580:intron | 55.0% | |
| TCTTCGTCGCTTCAGCCAAG+AGG | - | chr4.4:1582120-1582139 | MS.gene058580:CDS | 55.0% | |
| TGGCACACAAATGCTGGCAG+AGG | + | chr4.4:1582879-1582898 | None:intergenic | 55.0% | |
| GCGGGTCGGAGAAGCGGTTT+GGG | - | chr4.4:1582013-1582032 | MS.gene058580:CDS | 65.0% | |
| GGCGGGTCGGAGAAGCGGTT+TGG | - | chr4.4:1582012-1582031 | MS.gene058580:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 1582010 | 1584013 | 1582010 | ID=MS.gene058580 |
| chr4.4 | mRNA | 1582010 | 1584013 | 1582010 | ID=MS.gene058580.t1;Parent=MS.gene058580 |
| chr4.4 | exon | 1583795 | 1584013 | 1583795 | ID=MS.gene058580.t1.exon1;Parent=MS.gene058580.t1 |
| chr4.4 | CDS | 1583795 | 1584013 | 1583795 | ID=cds.MS.gene058580.t1;Parent=MS.gene058580.t1 |
| chr4.4 | exon | 1582888 | 1583063 | 1582888 | ID=MS.gene058580.t1.exon2;Parent=MS.gene058580.t1 |
| chr4.4 | CDS | 1582888 | 1583063 | 1582888 | ID=cds.MS.gene058580.t1;Parent=MS.gene058580.t1 |
| chr4.4 | exon | 1582707 | 1582788 | 1582707 | ID=MS.gene058580.t1.exon3;Parent=MS.gene058580.t1 |
| chr4.4 | CDS | 1582707 | 1582788 | 1582707 | ID=cds.MS.gene058580.t1;Parent=MS.gene058580.t1 |
| chr4.4 | exon | 1582010 | 1582186 | 1582010 | ID=MS.gene058580.t1.exon4;Parent=MS.gene058580.t1 |
| chr4.4 | CDS | 1582010 | 1582186 | 1582010 | ID=cds.MS.gene058580.t1;Parent=MS.gene058580.t1 |
| Gene Sequence |
| Protein sequence |
