AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene78411

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene78411.t1 MTR_2g097620 97.125 313 6 1 1 313 1 310 0.0 624
MS.gene78411.t1 MTR_4g064570 66.144 319 89 7 1 313 1 306 2.85e-137 394
MS.gene78411.t1 MTR_3g068005 51.652 333 122 5 9 306 2 330 6.95e-110 326
MS.gene78411.t1 MTR_5g080350 44.688 320 143 8 12 307 2 311 3.17e-82 255
MS.gene78411.t1 MTR_1g114320 32.184 261 146 8 14 258 13 258 9.43e-40 142
MS.gene78411.t1 MTR_5g088720 34.586 266 121 9 6 237 4 250 2.51e-38 139
MS.gene78411.t1 MTR_5g088720 34.601 263 119 9 9 237 2 245 3.88e-38 139
MS.gene78411.t1 MTR_5g088720 34.944 269 122 10 3 237 42 291 4.82e-38 139
MS.gene78411.t1 MTR_0067s0100 35.656 244 131 8 9 237 3 235 1.58e-35 130
MS.gene78411.t1 MTR_1g051105 32.035 231 125 6 9 237 4 204 9.22e-33 122
MS.gene78411.t1 MTR_6g079660 46.903 113 56 2 135 246 180 289 4.41e-31 120
MS.gene78411.t1 MTR_3g072630 28.968 252 146 4 14 237 20 266 2.11e-30 118
MS.gene78411.t1 MTR_3g072630 28.968 252 146 4 14 237 20 266 3.51e-30 117
MS.gene78411.t1 MTR_3g083480 40.940 149 73 5 135 278 188 326 5.32e-28 112
MS.gene78411.t1 MTR_1g114620 50.000 102 45 3 145 245 221 317 5.83e-26 106
MS.gene78411.t1 MTR_6g032960 41.026 117 63 3 124 240 174 284 1.66e-24 102
MS.gene78411.t1 MTR_2g007340 43.519 108 59 1 149 254 158 265 2.11e-23 99.0
MS.gene78411.t1 MTR_7g074170 40.000 115 65 2 131 244 286 397 1.61e-22 98.6
MS.gene78411.t1 MTR_4g110100 38.739 111 64 3 137 246 307 414 2.56e-22 97.4
MS.gene78411.t1 MTR_3g088080 43.902 82 44 1 157 238 5 84 1.28e-21 87.8
MS.gene78411.t1 MTR_6g016350 46.809 94 49 1 152 244 270 363 1.54e-19 89.0
MS.gene78411.t1 MTR_1g014710 36.893 103 62 1 146 245 184 286 4.80e-19 86.7
MS.gene78411.t1 MTR_5g041310 35.714 112 64 2 129 240 60 163 1.33e-17 80.9
MS.gene78411.t1 MTR_5g041330 40.000 80 45 1 162 241 78 154 1.59e-16 77.8
MS.gene78411.t1 MTR_2g061790 61.905 42 16 0 192 233 109 150 2.67e-14 71.6
MS.gene78411.t1 MTR_3g031000 41.667 72 34 2 167 238 279 342 1.82e-12 67.8
MS.gene78411.t1 MTR_5g022920 29.375 160 93 5 97 236 75 234 6.22e-12 65.1
MS.gene78411.t1 MTR_3g025510 35.938 64 41 0 170 233 83 146 8.19e-12 63.2
MS.gene78411.t1 MTR_4g080750 44.444 54 30 0 180 233 173 226 4.62e-11 63.2
MS.gene78411.t1 MTR_5g058530 36.364 88 40 3 179 258 210 289 4.95e-11 63.5
MS.gene78411.t1 MTR_1g095030 58.333 36 15 0 198 233 18 53 8.97e-11 59.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene78411.t1 AT5G59550 51.961 306 122 6 13 304 17 311 5.16e-93 283
MS.gene78411.t1 AT5G59550 51.961 306 122 6 13 304 122 416 4.25e-92 284
MS.gene78411.t1 AT3G46620 52.459 305 122 8 13 304 30 324 4.43e-92 280
MS.gene78411.t1 AT2G39720 44.985 329 116 10 10 293 2 310 2.57e-83 258
MS.gene78411.t1 AT2G39720 44.985 329 116 10 10 293 2 310 2.57e-83 258
MS.gene78411.t1 AT1G55530 27.817 284 141 7 12 245 7 276 3.38e-36 134
MS.gene78411.t1 AT1G55530 27.817 284 141 7 12 245 7 276 3.38e-36 134
MS.gene78411.t1 AT3G56580 34.694 245 122 7 12 237 6 231 3.18e-35 130
MS.gene78411.t1 AT3G56580 34.694 245 122 7 12 237 6 231 3.18e-35 130
MS.gene78411.t1 AT3G56580 34.694 245 122 7 12 237 6 231 3.18e-35 130
MS.gene78411.t1 AT3G19950 30.070 286 133 8 3 246 10 270 3.36e-35 131
MS.gene78411.t1 AT3G19950 30.070 286 133 8 3 246 68 328 6.78e-35 131
MS.gene78411.t1 AT3G19950 30.070 286 133 8 3 246 68 328 6.78e-35 131
MS.gene78411.t1 AT2G40830 34.387 253 140 7 9 246 3 244 6.95e-35 130
MS.gene78411.t1 AT2G40830 34.387 253 140 7 9 246 3 244 6.95e-35 130
MS.gene78411.t1 AT2G40830 34.387 253 140 7 9 246 3 244 6.95e-35 130
MS.gene78411.t1 AT2G40830 34.387 253 140 7 9 246 3 244 6.95e-35 130
MS.gene78411.t1 AT1G55530 30.303 264 129 7 11 245 6 243 1.88e-34 129
MS.gene78411.t1 AT3G13430 30.182 275 140 9 9 238 4 271 8.08e-32 121
MS.gene78411.t1 AT3G13430 30.182 275 140 9 9 238 4 271 8.08e-32 121
MS.gene78411.t1 AT3G13430 30.182 275 140 9 9 238 4 271 8.08e-32 121
MS.gene78411.t1 AT3G13430 30.182 275 140 9 9 238 4 271 8.08e-32 121
MS.gene78411.t1 AT3G10815 58.974 78 32 0 166 243 95 172 5.44e-28 108
MS.gene78411.t1 AT5G01980 42.735 117 64 1 128 244 289 402 1.06e-25 107
MS.gene78411.t1 AT5G08139 43.689 103 54 2 145 246 264 363 1.57e-25 105
MS.gene78411.t1 AT5G56340 44.231 104 50 2 135 238 210 305 3.41e-24 102
MS.gene78411.t1 AT1G60360 42.453 106 55 2 142 246 178 278 5.04e-24 100
MS.gene78411.t1 AT5G15820 44.681 94 51 1 154 246 252 345 1.02e-23 100
MS.gene78411.t1 AT3G02340 35.032 157 89 3 120 265 252 406 3.38e-23 99.8
MS.gene78411.t1 AT3G02340 35.032 157 89 3 120 265 252 406 3.38e-23 99.8
MS.gene78411.t1 AT4G26400 40.952 105 54 2 135 239 192 288 2.12e-22 96.7
MS.gene78411.t1 AT4G26400 40.952 105 54 2 135 239 192 288 2.12e-22 96.7
MS.gene78411.t1 AT5G64920 44.231 104 57 1 142 244 206 309 3.24e-22 95.9
MS.gene78411.t1 AT1G68180 53.521 71 33 0 166 236 112 182 5.08e-22 93.6
MS.gene78411.t1 AT3G60080 55.405 74 25 1 173 238 142 215 2.61e-21 92.8
MS.gene78411.t1 AT5G60820 44.211 95 45 3 150 239 328 419 7.67e-20 90.1
MS.gene78411.t1 AT5G20910 35.398 113 64 3 136 245 177 283 1.04e-19 88.6
MS.gene78411.t1 AT2G44330 42.157 102 45 2 173 260 71 172 2.66e-19 84.7
MS.gene78411.t1 AT1G26800 40.541 111 57 3 129 239 59 160 1.64e-17 80.1
MS.gene78411.t1 AT1G14200 29.448 163 85 3 75 237 22 154 2.69e-15 73.6
MS.gene78411.t1 AT5G02750 50.000 56 28 0 189 244 211 266 1.07e-14 73.9
MS.gene78411.t1 AT3G30460 43.662 71 36 2 172 238 75 145 3.66e-13 66.6
MS.gene78411.t1 AT3G30460 43.662 71 36 2 172 238 111 181 5.74e-13 67.0

Find 101 sgRNAs with CRISPR-Local

Find 116 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCGGCGGGAGGTTTGTCTTC+TGG 0.283501 2.3:-5459496 None:intergenic
GCAAACTGCACAGTGAATTT+CGG 0.334109 2.3:-5459874 None:intergenic
AAGCGGTTGGATTGACGATA+TGG 0.341428 2.3:+5460072 MS.gene78411:CDS
GCGTCTGAGAGTAGAATTTC+CGG 0.352120 2.3:+5460035 MS.gene78411:CDS
ACCGCCGCCGGCGTCTGCAC+CGG 0.356131 2.3:-5459604 None:intergenic
GAGGACAAACGACGTTGTTT+TGG 0.359117 2.3:-5459392 None:intergenic
CATCCTCAACGACGTCGTTT+TGG 0.362996 2.3:+5459334 MS.gene78411:CDS
AGAACGATTACAGGATTAAA+AGG 0.369503 2.3:-5459549 None:intergenic
GCCGGCGTCTGCACCGGCAC+CGG 0.370020 2.3:-5459598 None:intergenic
TCTCTTCGACGAATCCGTTT+TGG 0.397147 2.3:-5459419 None:intergenic
CCGGCGGTGGTGTCTTCTCT+AGG 0.412632 2.3:-5459579 None:intergenic
GCCGGTGCAGACGCCGGCGG+CGG 0.414591 2.3:+5459603 MS.gene78411:CDS
TCGGAGCTATTACTCGGTTC+CGG 0.420389 2.3:+5459720 MS.gene78411:CDS
TACTCGGTTCCGGCTTCGAT+CGG 0.428438 2.3:+5459730 MS.gene78411:CDS
ATCAACAAACATACATAGTT+GGG 0.428805 2.3:+5460542 MS.gene78411:CDS
GTCTGCACCGGCACCGGCGG+TGG 0.429367 2.3:-5459592 None:intergenic
GATCAACAAACATACATAGT+TGG 0.431507 2.3:+5460541 MS.gene78411:CDS
TTCGGATTCGATTTCTGAAT+CGG 0.431784 2.3:-5459856 None:intergenic
GCAGACGCCGGCGGCGGTAG+CGG 0.432430 2.3:+5459609 MS.gene78411:CDS
GGTCCACGGAGAACGATTAC+AGG 0.435957 2.3:-5459558 None:intergenic
TCTATCGCCGCCTTTGACGC+CGG 0.437391 2.3:-5459810 None:intergenic
CAAATCGAAATCAACGGTTT+CGG 0.449596 2.3:+5459771 MS.gene78411:CDS
GGCGTTACGACGCCTGCGGC+GGG 0.454639 2.3:-5459511 None:intergenic
CTCTAACAACCGATCGAAGC+CGG 0.463112 2.3:-5459739 None:intergenic
ATTGACGATATGGAGGTTAC+CGG 0.464101 2.3:+5460082 MS.gene78411:CDS
GTTTGTCCTCACTGCCAAAA+CGG 0.475086 2.3:+5459405 MS.gene78411:CDS
TAGAAGAATTTCTTTGACTG+TGG 0.477614 2.3:+5460211 MS.gene78411:CDS
CGCCGCAGGCGTCGTAACGC+CGG 0.483194 2.3:+5459513 MS.gene78411:CDS
TTCGCCGGTGGTCGGAGAGC+CGG 0.489916 2.3:+5460128 MS.gene78411:CDS
GCCGGTGCCGGTGCAGACGC+CGG 0.490347 2.3:+5459597 MS.gene78411:CDS
TCCGACATGCTTGGTGGAAG+TGG 0.494594 2.3:-5459702 None:intergenic
AGAAACCGCCGGTGATTGAC+CGG 0.496031 2.3:-5459448 None:intergenic
CGCTTCTTCATCAATCTGAC+CGG 0.496970 2.3:-5460054 None:intergenic
CGCAGGCGTCGTAACGCCGG+CGG 0.497915 2.3:+5459516 MS.gene78411:CDS
ATCAACACCGCTACCGCCGC+CGG 0.500661 2.3:-5459616 None:intergenic
CGGCGTTACGACGCCTGCGG+CGG 0.500942 2.3:-5459512 None:intergenic
GAAGACAAACCTCCCGCCGC+AGG 0.504170 2.3:+5459499 MS.gene78411:CDS
AAAAGGCGAACGGCTGCCGC+CGG 0.509087 2.3:-5459532 None:intergenic
TCCATCTCCGTGTAAACAAT+CGG 0.509848 2.3:-5460164 None:intergenic
TTCAATGCGAAATTCGTGTC+CGG 0.510386 2.3:+5459980 MS.gene78411:CDS
TTATTGAAGGGTGCAAGATA+AGG 0.514948 2.3:+5460503 MS.gene78411:intron
ACCGATTGTTTACACGGAGA+TGG 0.520025 2.3:+5460163 MS.gene78411:CDS
GGTGCCGGTGCAGACGCCGG+CGG 0.520180 2.3:+5459600 MS.gene78411:CDS
CGCCGGCGTTACGACGCCTG+CGG 0.521985 2.3:-5459515 None:intergenic
GGAGAATCCACCGGCGTCAA+AGG 0.524083 2.3:+5459800 MS.gene78411:CDS
CAGATTGATGAAGAAGCGGT+TGG 0.524412 2.3:+5460059 MS.gene78411:CDS
CCGGGAGGTGGATTTGCTGT+TGG 0.525108 2.3:+5460101 MS.gene78411:CDS
TTGGAAGATTCGCCGGTGGT+CGG 0.527536 2.3:+5460120 MS.gene78411:CDS
GAAGACACCACCGCCGGTGC+CGG 0.529621 2.3:+5459585 MS.gene78411:CDS
ATATGGAGGTTACCGGGAGG+TGG 0.532142 2.3:+5460089 MS.gene78411:CDS
ATTCCGATTGCATTCTCCCA+TGG 0.535454 2.3:+5459955 MS.gene78411:CDS
ATCGCCGCCTTTGACGCCGG+TGG 0.538439 2.3:-5459807 None:intergenic
TGCAAAGAACAATTCGAGCT+AGG 0.538605 2.3:+5459894 MS.gene78411:CDS
AAGCCATGGGAGAATGCAAT+CGG 0.539317 2.3:-5459958 None:intergenic
GGCGTCTGCACCGGCACCGG+CGG 0.539489 2.3:-5459595 None:intergenic
AATAGCTCCGACATGCTTGG+TGG 0.540581 2.3:-5459708 None:intergenic
TGGTGGAAGTGGACGTAGAT+CGG 0.541171 2.3:-5459691 None:intergenic
AGAAGAATTTCTTTGACTGT+GGG 0.543294 2.3:+5460212 MS.gene78411:CDS
GATTCACGCCGGTCAATCAC+CGG 0.546800 2.3:+5459440 MS.gene78411:CDS
GCGGGAGGTTTGTCTTCTGG+AGG 0.550711 2.3:-5459493 None:intergenic
GAATCGGTGATTTCAACTGT+TGG 0.552700 2.3:-5459840 None:intergenic
TCAGTTACCGATTGTTTACA+CGG 0.553870 2.3:+5460157 MS.gene78411:CDS
AGTAATAGCTCCGACATGCT+TGG 0.555247 2.3:-5459711 None:intergenic
GAATTTCGCATTGAAAGCCA+TGG 0.556326 2.3:-5459972 None:intergenic
CGGTCAGATTGATGAAGAAG+CGG 0.556476 2.3:+5460055 MS.gene78411:CDS
GAAATTCGTGTCCGGTGTGT+CGG 0.561109 2.3:+5459988 MS.gene78411:CDS
TTCTCTCAAATCGAAATCAA+CGG 0.566290 2.3:+5459765 MS.gene78411:CDS
GCACCAAAACGACGTCGTTG+AGG 0.569778 2.3:-5459337 None:intergenic
AATCAACGGTTTCGGAAGGT+CGG 0.570591 2.3:+5459779 MS.gene78411:CDS
GTTACGACGCCTGCGGCGGG+AGG 0.579784 2.3:-5459508 None:intergenic
CGGAAGGTCGGAGAATCCAC+CGG 0.582211 2.3:+5459791 MS.gene78411:CDS
CAAAACGACGTCGTTGAGGA+TGG 0.582320 2.3:-5459333 None:intergenic
TGGTGTCTTCTCTAGGTCCA+CGG 0.584451 2.3:-5459572 None:intergenic
CGGTAGCGGTGTTGATAGCG+AGG 0.586301 2.3:+5459623 MS.gene78411:CDS
TTTGCTGTTGGAAGATTCGC+CGG 0.595189 2.3:+5460113 MS.gene78411:CDS
ATTGTTTACACGGAGATGGA+TGG 0.596456 2.3:+5460167 MS.gene78411:CDS
TTGACGATATGGAGGTTACC+GGG 0.603171 2.3:+5460083 MS.gene78411:CDS
TCGAAATCAACGGTTTCGGA+AGG 0.605406 2.3:+5459775 MS.gene78411:CDS
CCAACAGCAAATCCACCTCC+CGG 0.611076 2.3:-5460101 None:intergenic
AATTTCGCATTGAAAGCCAT+GGG 0.617522 2.3:-5459971 None:intergenic
CTCACCGGCTCTCCGACCAC+CGG 0.618605 2.3:-5460132 None:intergenic
GAATCCACCGGCGTCAAAGG+CGG 0.619728 2.3:+5459803 MS.gene78411:CDS
AGCATGTCGGAGCTATTACT+CGG 0.620643 2.3:+5459714 MS.gene78411:CDS
AATCGGTAACTGAATCTCAC+CGG 0.623794 2.3:-5460147 None:intergenic
ATGGGAGAATGCAATCGGAA+TGG 0.625343 2.3:-5459953 None:intergenic
CCTAGAGAAGACACCACCGC+CGG 0.626450 2.3:+5459579 MS.gene78411:CDS
CGGTTGGATTGACGATATGG+AGG 0.630916 2.3:+5460075 MS.gene78411:CDS
GGTAGCGGTGTTGATAGCGA+GGG 0.633690 2.3:+5459624 MS.gene78411:CDS
GGTAACTCGTGCCGACACAC+CGG 0.638241 2.3:-5459999 None:intergenic
TCCACTTCCACCAAGCATGT+CGG 0.655861 2.3:+5459701 MS.gene78411:CDS
AATCCTGTAATCGTTCTCCG+TGG 0.656883 2.3:+5459555 MS.gene78411:CDS
TCACGCCGGTCAATCACCGG+CGG 0.670342 2.3:+5459443 MS.gene78411:CDS
TCGGCGAAAAGAGAAACCGC+CGG 0.670628 2.3:-5459459 None:intergenic
GAATGGTAAAGATGATTACA+CGG 0.678082 2.3:-5459936 None:intergenic
GTAGCGGTGTTGATAGCGAG+GGG 0.678382 2.3:+5459625 MS.gene78411:CDS
TTATACTATGAAGACAGTAA+CGG 0.680959 2.3:+5459666 MS.gene78411:CDS
TTACAGGATTAAAAGGCGAA+CGG 0.681942 2.3:-5459542 None:intergenic
GCTGTTGGAAGATTCGCCGG+TGG 0.685393 2.3:+5460116 MS.gene78411:CDS
TCTGGAGGACTGAATACCGT+CGG 0.709231 2.3:-5459478 None:intergenic
TTCGTCGAAGAGATTCACGC+CGG 0.729026 2.3:+5459429 MS.gene78411:CDS
ACGATATGGAGGTTACCGGG+AGG 0.773215 2.3:+5460086 MS.gene78411:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GAAATTTTTTATCGTTTTTT+GGG + chr2.3:5460279-5460298 MS.gene78411:intron 15.0%
!! TACAGAAGAATAATATGATT+TGG + chr2.3:5460379-5460398 MS.gene78411:intron 20.0%
!! TTTAGTAGATGATTATTGAA+GGG + chr2.3:5460491-5460510 MS.gene78411:intron 20.0%
!!! CGAAATTTTTTATCGTTTTT+TGG + chr2.3:5460278-5460297 MS.gene78411:intron 20.0%
!!! TAATATGATTTGGTTTTGTT+TGG + chr2.3:5460389-5460408 MS.gene78411:intron 20.0%
! ATCAACAAACATACATAGTT+GGG + chr2.3:5460542-5460561 MS.gene78411:CDS 25.0%
! GTTTAGTAGATGATTATTGA+AGG + chr2.3:5460490-5460509 MS.gene78411:intron 25.0%
! TTATACTATGAAGACAGTAA+CGG + chr2.3:5459666-5459685 MS.gene78411:CDS 25.0%
AGAACGATTACAGGATTAAA+AGG - chr2.3:5459552-5459571 None:intergenic 30.0%
AGAAGAATTTCTTTGACTGT+GGG + chr2.3:5460212-5460231 MS.gene78411:CDS 30.0%
GAATGGTAAAGATGATTACA+CGG - chr2.3:5459939-5459958 None:intergenic 30.0%
GATCAACAAACATACATAGT+TGG + chr2.3:5460541-5460560 MS.gene78411:CDS 30.0%
TAGAAGAATTTCTTTGACTG+TGG + chr2.3:5460211-5460230 MS.gene78411:CDS 30.0%
TTCTCTCAAATCGAAATCAA+CGG + chr2.3:5459765-5459784 MS.gene78411:CDS 30.0%
! AACTTAAATCGTAGCTTTTC+TGG + chr2.3:5460308-5460327 MS.gene78411:intron 30.0%
AAGAAGAAGAAGCAGAACTT+GGG + chr2.3:5460355-5460374 MS.gene78411:intron 35.0%
AATTTCGCATTGAAAGCCAT+GGG - chr2.3:5459974-5459993 None:intergenic 35.0%
CAAATCGAAATCAACGGTTT+CGG + chr2.3:5459771-5459790 MS.gene78411:CDS 35.0%
TTACAGGATTAAAAGGCGAA+CGG - chr2.3:5459545-5459564 None:intergenic 35.0%
TTCGGATTCGATTTCTGAAT+CGG - chr2.3:5459859-5459878 None:intergenic 35.0%
! TCAGTTACCGATTGTTTACA+CGG + chr2.3:5460157-5460176 MS.gene78411:CDS 35.0%
! TTATTGAAGGGTGCAAGATA+AGG + chr2.3:5460503-5460522 MS.gene78411:intron 35.0%
AATAGAGTTAGAGAGAGACG+TGG + chr2.3:5460239-5460258 MS.gene78411:intron 40.0%
AATCGGTAACTGAATCTCAC+CGG - chr2.3:5460150-5460169 None:intergenic 40.0%
ATTGACGATATGGAGGTTAC+CGG + chr2.3:5460082-5460101 MS.gene78411:CDS 40.0%
ATTGTTTACACGGAGATGGA+TGG + chr2.3:5460167-5460186 MS.gene78411:CDS 40.0%
CAAGAAGAAGAAGCAGAACT+TGG + chr2.3:5460354-5460373 MS.gene78411:intron 40.0%
GAATCGGTGATTTCAACTGT+TGG - chr2.3:5459843-5459862 None:intergenic 40.0%
GAATTTCGCATTGAAAGCCA+TGG - chr2.3:5459975-5459994 None:intergenic 40.0%
GCAAACTGCACAGTGAATTT+CGG - chr2.3:5459877-5459896 None:intergenic 40.0%
TCCATCTCCGTGTAAACAAT+CGG - chr2.3:5460167-5460186 None:intergenic 40.0%
TGCAAAGAACAATTCGAGCT+AGG + chr2.3:5459894-5459913 MS.gene78411:CDS 40.0%
TTAGAGAGAGACGTGGAATT+CGG + chr2.3:5460246-5460265 MS.gene78411:intron 40.0%
TTCAATGCGAAATTCGTGTC+CGG + chr2.3:5459980-5459999 MS.gene78411:CDS 40.0%
AAGCCATGGGAGAATGCAAT+CGG - chr2.3:5459961-5459980 None:intergenic 45.0%
AAGCGGTTGGATTGACGATA+TGG + chr2.3:5460072-5460091 MS.gene78411:CDS 45.0%
AATCAACGGTTTCGGAAGGT+CGG + chr2.3:5459779-5459798 MS.gene78411:CDS 45.0%
AATCCTGTAATCGTTCTCCG+TGG + chr2.3:5459555-5459574 MS.gene78411:CDS 45.0%
ACCGATTGTTTACACGGAGA+TGG + chr2.3:5460163-5460182 MS.gene78411:CDS 45.0%
AGCATGTCGGAGCTATTACT+CGG + chr2.3:5459714-5459733 MS.gene78411:CDS 45.0%
AGTAATAGCTCCGACATGCT+TGG - chr2.3:5459714-5459733 None:intergenic 45.0%
ATGGGAGAATGCAATCGGAA+TGG - chr2.3:5459956-5459975 None:intergenic 45.0%
ATTCCGATTGCATTCTCCCA+TGG + chr2.3:5459955-5459974 MS.gene78411:CDS 45.0%
CAGATTGATGAAGAAGCGGT+TGG + chr2.3:5460059-5460078 MS.gene78411:CDS 45.0%
CGCTTCTTCATCAATCTGAC+CGG - chr2.3:5460057-5460076 None:intergenic 45.0%
CGGTCAGATTGATGAAGAAG+CGG + chr2.3:5460055-5460074 MS.gene78411:CDS 45.0%
GCGTCTGAGAGTAGAATTTC+CGG + chr2.3:5460035-5460054 MS.gene78411:CDS 45.0%
GTTTGTCCTCACTGCCAAAA+CGG + chr2.3:5459405-5459424 MS.gene78411:CDS 45.0%
TCGAAATCAACGGTTTCGGA+AGG + chr2.3:5459775-5459794 MS.gene78411:CDS 45.0%
TTGACGATATGGAGGTTACC+GGG + chr2.3:5460083-5460102 MS.gene78411:CDS 45.0%
! GAGGACAAACGACGTTGTTT+TGG - chr2.3:5459395-5459414 None:intergenic 45.0%
! TCTCTTCGACGAATCCGTTT+TGG - chr2.3:5459422-5459441 None:intergenic 45.0%
!! ACTCTCAGACGCGTTTTGAT+CGG - chr2.3:5460027-5460046 None:intergenic 45.0%
!! TTTGCTGTTGGAAGATTCGC+CGG + chr2.3:5460113-5460132 MS.gene78411:CDS 45.0%
AATAGCTCCGACATGCTTGG+TGG - chr2.3:5459711-5459730 None:intergenic 50.0%
CAAAACGACGTCGTTGAGGA+TGG - chr2.3:5459336-5459355 None:intergenic 50.0%
CGGTTGGATTGACGATATGG+AGG + chr2.3:5460075-5460094 MS.gene78411:CDS 50.0%
CTCTAACAACCGATCGAAGC+CGG - chr2.3:5459742-5459761 None:intergenic 50.0%
GAAATTCGTGTCCGGTGTGT+CGG + chr2.3:5459988-5460007 MS.gene78411:CDS 50.0%
TCCACTTCCACCAAGCATGT+CGG + chr2.3:5459701-5459720 MS.gene78411:CDS 50.0%
TCGGAGCTATTACTCGGTTC+CGG + chr2.3:5459720-5459739 MS.gene78411:CDS 50.0%
TCTGGAGGACTGAATACCGT+CGG - chr2.3:5459481-5459500 None:intergenic 50.0%
TGGTGGAAGTGGACGTAGAT+CGG - chr2.3:5459694-5459713 None:intergenic 50.0%
TGGTGTCTTCTCTAGGTCCA+CGG - chr2.3:5459575-5459594 None:intergenic 50.0%
TTCGTCGAAGAGATTCACGC+CGG + chr2.3:5459429-5459448 MS.gene78411:CDS 50.0%
! CATCCTCAACGACGTCGTTT+TGG + chr2.3:5459334-5459353 MS.gene78411:CDS 50.0%
!! ACGAATCCGTTTTGGCAGTG+AGG - chr2.3:5459414-5459433 None:intergenic 50.0%
!! TCAGACGCGTTTTGATCGGA+CGG - chr2.3:5460023-5460042 None:intergenic 50.0%
ACGATATGGAGGTTACCGGG+AGG + chr2.3:5460086-5460105 MS.gene78411:CDS 55.0%
AGAAACCGCCGGTGATTGAC+CGG - chr2.3:5459451-5459470 None:intergenic 55.0%
ATATGGAGGTTACCGGGAGG+TGG + chr2.3:5460089-5460108 MS.gene78411:CDS 55.0%
CCAACAGCAAATCCACCTCC+CGG - chr2.3:5460104-5460123 None:intergenic 55.0%
GATTCACGCCGGTCAATCAC+CGG + chr2.3:5459440-5459459 MS.gene78411:CDS 55.0%
GCACCAAAACGACGTCGTTG+AGG - chr2.3:5459340-5459359 None:intergenic 55.0%
GGTCCACGGAGAACGATTAC+AGG - chr2.3:5459561-5459580 None:intergenic 55.0%
TACTCGGTTCCGGCTTCGAT+CGG + chr2.3:5459730-5459749 MS.gene78411:CDS 55.0%
TCGGCGAAAAGAGAAACCGC+CGG - chr2.3:5459462-5459481 None:intergenic 55.0%
TTGGAAGATTCGCCGGTGGT+CGG + chr2.3:5460120-5460139 MS.gene78411:CDS 55.0%
! GCGGTTTCTCTTTTCGCCGA+CGG + chr2.3:5459462-5459481 MS.gene78411:CDS 55.0%
! TCCGACATGCTTGGTGGAAG+TGG - chr2.3:5459705-5459724 None:intergenic 55.0%
!! GGTAGCGGTGTTGATAGCGA+GGG + chr2.3:5459624-5459643 MS.gene78411:CDS 55.0%
!! GTAGCGGTGTTGATAGCGAG+GGG + chr2.3:5459625-5459644 MS.gene78411:CDS 55.0%
CCTAGAGAAGACACCACCGC+CGG + chr2.3:5459579-5459598 MS.gene78411:CDS 60.0%
CGGAAGGTCGGAGAATCCAC+CGG + chr2.3:5459791-5459810 MS.gene78411:CDS 60.0%
GAATCCACCGGCGTCAAAGG+CGG + chr2.3:5459803-5459822 MS.gene78411:CDS 60.0%
GCGGGAGGTTTGTCTTCTGG+AGG - chr2.3:5459496-5459515 None:intergenic 60.0%
GCTGTTGGAAGATTCGCCGG+TGG + chr2.3:5460116-5460135 MS.gene78411:CDS 60.0%
GGAGAATCCACCGGCGTCAA+AGG + chr2.3:5459800-5459819 MS.gene78411:CDS 60.0%
TCTATCGCCGCCTTTGACGC+CGG - chr2.3:5459813-5459832 None:intergenic 60.0%
! GGTAACTCGTGCCGACACAC+CGG - chr2.3:5460002-5460021 None:intergenic 60.0%
!! CCGGGAGGTGGATTTGCTGT+TGG + chr2.3:5460101-5460120 MS.gene78411:CDS 60.0%
!! CGGTAGCGGTGTTGATAGCG+AGG + chr2.3:5459623-5459642 MS.gene78411:CDS 60.0%
AAAAGGCGAACGGCTGCCGC+CGG - chr2.3:5459535-5459554 None:intergenic 65.0%
ATCAACACCGCTACCGCCGC+CGG - chr2.3:5459619-5459638 None:intergenic 65.0%
CCGGCGGTGGTGTCTTCTCT+AGG - chr2.3:5459582-5459601 None:intergenic 65.0%
GAAGACAAACCTCCCGCCGC+AGG + chr2.3:5459499-5459518 MS.gene78411:CDS 65.0%
GCGGCGGGAGGTTTGTCTTC+TGG - chr2.3:5459499-5459518 None:intergenic 65.0%
TCACGCCGGTCAATCACCGG+CGG + chr2.3:5459443-5459462 MS.gene78411:CDS 65.0%
ATCGCCGCCTTTGACGCCGG+TGG - chr2.3:5459810-5459829 None:intergenic 70.0%
GAAGACACCACCGCCGGTGC+CGG + chr2.3:5459585-5459604 MS.gene78411:CDS 70.0%
TTCGCCGGTGGTCGGAGAGC+CGG + chr2.3:5460128-5460147 MS.gene78411:CDS 70.0%
!! CTCACCGGCTCTCCGACCAC+CGG - chr2.3:5460135-5460154 None:intergenic 70.0%
CGCCGGCGTTACGACGCCTG+CGG - chr2.3:5459518-5459537 None:intergenic 75.0%
CGGCGTTACGACGCCTGCGG+CGG - chr2.3:5459515-5459534 None:intergenic 75.0%
GGCGTTACGACGCCTGCGGC+GGG - chr2.3:5459514-5459533 None:intergenic 75.0%
GTTACGACGCCTGCGGCGGG+AGG - chr2.3:5459511-5459530 None:intergenic 75.0%
! CGCAGGCGTCGTAACGCCGG+CGG + chr2.3:5459516-5459535 MS.gene78411:CDS 75.0%
! CGCCGCAGGCGTCGTAACGC+CGG + chr2.3:5459513-5459532 MS.gene78411:CDS 75.0%
! ACCGCCGCCGGCGTCTGCAC+CGG - chr2.3:5459607-5459626 None:intergenic 80.0%
! GCAGACGCCGGCGGCGGTAG+CGG + chr2.3:5459609-5459628 MS.gene78411:CDS 80.0%
!! GCCGGCGTCTGCACCGGCAC+CGG - chr2.3:5459601-5459620 None:intergenic 80.0%
!! GGCGTCTGCACCGGCACCGG+CGG - chr2.3:5459598-5459617 None:intergenic 80.0%
!!! GCCGGTGCCGGTGCAGACGC+CGG + chr2.3:5459597-5459616 MS.gene78411:CDS 80.0%
!!! GGTGCCGGTGCAGACGCCGG+CGG + chr2.3:5459600-5459619 MS.gene78411:CDS 80.0%
!!! GTCTGCACCGGCACCGGCGG+TGG - chr2.3:5459595-5459614 None:intergenic 80.0%
! GCCGGTGCAGACGCCGGCGG+CGG + chr2.3:5459603-5459622 MS.gene78411:CDS 85.0%


Chromosome Type Strat End Strand Name
chr2.3 gene 5459312 5460606 5459312 ID=MS.gene78411
chr2.3 mRNA 5459312 5460606 5459312 ID=MS.gene78411.t1;Parent=MS.gene78411
chr2.3 exon 5459312 5460236 5459312 ID=MS.gene78411.t1.exon1;Parent=MS.gene78411.t1
chr2.3 CDS 5459312 5460236 5459312 ID=cds.MS.gene78411.t1;Parent=MS.gene78411.t1
chr2.3 exon 5460512 5460606 5460512 ID=MS.gene78411.t1.exon2;Parent=MS.gene78411.t1
chr2.3 CDS 5460512 5460606 5460512 ID=cds.MS.gene78411.t1;Parent=MS.gene78411.t1
Gene Sequence

>MS.gene78411

ATGAACTCGGAAACTGAAACACCATCCTCAACGACGTCGTTTTGGTGCTACAGCTGCACGCGTTTCATTCACATCTTGAACCAAAACAACGTCGTTTGTCCTCACTGCCAAAACGGATTCGTCGAAGAGATTCACGCCGGTCAATCACCGGCGGTTTCTCTTTTCGCCGACGGTATTCAGTCCTCCAGAAGACAAACCTCCCGCCGCAGGCGTCGTAACGCCGGCGGCAGCCGTTCGCCTTTTAATCCTGTAATCGTTCTCCGTGGACCTAGAGAAGACACCACCGCCGGTGCCGGTGCAGACGCCGGCGGCGGTAGCGGTGTTGATAGCGAGGGGAATACAAGTAGTTTTGAATTATACTATGAAGACAGTAACGGTACCGATCTACGTCCACTTCCACCAAGCATGTCGGAGCTATTACTCGGTTCCGGCTTCGATCGGTTGTTAGAGCAATTCTCTCAAATCGAAATCAACGGTTTCGGAAGGTCGGAGAATCCACCGGCGTCAAAGGCGGCGATAGAGTCAATACCAACAGTTGAAATCACCGATTCAGAAATCGAATCCGAAATTCACTGTGCAGTTTGCAAAGAACAATTCGAGCTAGGTTCTGAAGCGCGTAAGATGCCGTGTAATCATCTTTACCATTCCGATTGCATTCTCCCATGGCTTTCAATGCGAAATTCGTGTCCGGTGTGTCGGCACGAGTTACCGTCCGATCAAAACGCGTCTGAGAGTAGAATTTCCGGTCAGATTGATGAAGAAGCGGTTGGATTGACGATATGGAGGTTACCGGGAGGTGGATTTGCTGTTGGAAGATTCGCCGGTGGTCGGAGAGCCGGTGAGATTCAGTTACCGATTGTTTACACGGAGATGGATGGTAACAATTCAAACGAAGATTCTAGAAGAATTTCTTTGACTGTGGGAAGTAATAGAGTTAGAGAGAGACGTGGAATTCGGAGAATTTTTCGAAATTTTTTATCGTTTTTTGGGAATGTCAACTTAAATCGTAGCTTTTCTGGTTCGTTGTTTAGTAGAAGAAGCTCAAGAAGAAGAAGCAGAACTTGGGTTACAGAAGAATAATATGATTTGGTTTTGTTTGGATTAAAACTTGAAAGCTAGTTAATTCATTTAAATTTAAAATTCTTACTGTAAATAGCATAAAATTGTGCTATAATTAAGTTTAGTAGATGATTATTGAAGGGTGCAAGATAAGGATTGTTGTTCTTGCTGATCAACAAACATACATAGTTGGGAAAGAAGCTAAGCTATGCTTATTTAGTGTTTATCGTTGTTAA
Protein sequence

>MS.gene78411.t1

MNSETETPSSTTSFWCYSCTRFIHILNQNNVVCPHCQNGFVEEIHAGQSPAVSLFADGIQSSRRQTSRRRRRNAGGSRSPFNPVIVLRGPREDTTAGAGADAGGGSGVDSEGNTSSFELYYEDSNGTDLRPLPPSMSELLLGSGFDRLLEQFSQIEINGFGRSENPPASKAAIESIPTVEITDSEIESEIHCAVCKEQFELGSEARKMPCNHLYHSDCILPWLSMRNSCPVCRHELPSDQNASESRISGQIDEEAVGLTIWRLPGGGFAVGRFAGGRRAGEIQLPIVYTEMDGNNSNEDSRRISLTVGRCKIRIVVLADQQTYIVGKEAKLCLFSVYRC