AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene052083

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene052083.t1 MTR_2g097620 98.324 358 3 1 1 358 1 355 0.0 713
MS.gene052083.t1 MTR_4g064570 64.266 361 106 8 1 351 1 348 8.51e-150 427
MS.gene052083.t1 MTR_3g068005 51.163 344 129 5 9 317 2 341 1.44e-111 331
MS.gene052083.t1 MTR_5g080350 44.186 344 157 9 12 330 2 335 3.68e-83 258
MS.gene052083.t1 MTR_1g114320 32.184 261 146 8 14 258 13 258 5.75e-40 144
MS.gene052083.t1 MTR_5g088720 34.586 266 121 9 6 237 4 250 1.40e-38 140
MS.gene052083.t1 MTR_5g088720 34.601 263 119 9 9 237 2 245 2.12e-38 140
MS.gene052083.t1 MTR_5g088720 34.572 269 123 9 3 237 42 291 2.40e-38 140
MS.gene052083.t1 MTR_0067s0100 35.656 244 131 8 9 237 3 235 1.42e-35 131
MS.gene052083.t1 MTR_1g051105 32.035 231 125 6 9 237 4 204 4.65e-33 124
MS.gene052083.t1 MTR_6g079660 46.903 113 56 2 135 246 180 289 1.85e-31 122
MS.gene052083.t1 MTR_3g072630 28.968 252 146 4 14 237 20 266 1.28e-30 119
MS.gene052083.t1 MTR_3g072630 28.968 252 146 4 14 237 20 266 2.49e-30 118
MS.gene052083.t1 MTR_3g083480 42.520 127 61 3 135 257 188 306 3.80e-28 113
MS.gene052083.t1 MTR_1g114620 50.000 102 45 3 145 245 221 317 3.64e-26 107
MS.gene052083.t1 MTR_6g032960 41.026 117 63 3 124 240 174 284 6.28e-25 103
MS.gene052083.t1 MTR_2g007340 43.519 108 59 1 149 254 158 265 1.15e-23 100
MS.gene052083.t1 MTR_7g074170 43.564 101 53 2 145 244 300 397 1.03e-22 99.4
MS.gene052083.t1 MTR_4g110100 38.739 111 64 3 137 246 307 414 1.27e-22 98.6
MS.gene052083.t1 MTR_3g088080 43.902 82 44 1 157 238 5 84 2.84e-22 90.1
MS.gene052083.t1 MTR_6g016350 46.809 94 49 1 152 244 270 363 6.59e-20 90.1
MS.gene052083.t1 MTR_1g014710 36.893 103 62 1 146 245 184 286 2.42e-19 87.8
MS.gene052083.t1 MTR_5g041310 35.714 112 64 2 129 240 60 163 6.62e-18 82.0
MS.gene052083.t1 MTR_5g041330 40.000 80 45 1 162 241 78 154 7.54e-17 79.0
MS.gene052083.t1 MTR_2g061790 61.905 42 16 0 192 233 109 150 1.66e-14 72.4
MS.gene052083.t1 MTR_3g031000 41.667 72 34 2 167 238 279 342 1.08e-12 68.6
MS.gene052083.t1 MTR_5g022920 29.375 160 93 5 97 236 75 234 4.60e-12 65.5
MS.gene052083.t1 MTR_3g025510 35.938 64 41 0 170 233 83 146 4.79e-12 63.9
MS.gene052083.t1 MTR_4g080750 44.444 54 30 0 180 233 173 226 1.97e-11 64.3
MS.gene052083.t1 MTR_5g058530 36.364 88 40 3 179 258 210 289 2.36e-11 64.7
MS.gene052083.t1 MTR_1g095030 58.333 36 15 0 198 233 18 53 7.67e-11 59.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene052083.t1 AT5G59550 51.792 307 123 6 12 304 16 311 4.26e-93 284
MS.gene052083.t1 AT5G59550 51.961 306 122 6 13 304 122 416 2.76e-92 285
MS.gene052083.t1 AT3G46620 52.459 305 122 8 13 304 30 324 3.25e-92 281
MS.gene052083.t1 AT2G39720 44.985 329 116 10 10 293 2 310 1.34e-83 259
MS.gene052083.t1 AT2G39720 44.985 329 116 10 10 293 2 310 1.34e-83 259
MS.gene052083.t1 AT1G55530 27.719 285 142 7 11 245 6 276 2.17e-36 135
MS.gene052083.t1 AT1G55530 27.719 285 142 7 11 245 6 276 2.17e-36 135
MS.gene052083.t1 AT3G19950 29.371 286 135 8 3 246 10 270 1.32e-35 132
MS.gene052083.t1 AT3G56580 34.836 244 121 7 13 237 7 231 1.67e-35 132
MS.gene052083.t1 AT3G56580 34.836 244 121 7 13 237 7 231 1.67e-35 132
MS.gene052083.t1 AT3G56580 34.836 244 121 7 13 237 7 231 1.67e-35 132
MS.gene052083.t1 AT2G40830 34.387 253 140 7 9 246 3 244 2.73e-35 132
MS.gene052083.t1 AT2G40830 34.387 253 140 7 9 246 3 244 2.73e-35 132
MS.gene052083.t1 AT2G40830 34.387 253 140 7 9 246 3 244 2.73e-35 132
MS.gene052083.t1 AT2G40830 34.387 253 140 7 9 246 3 244 2.73e-35 132
MS.gene052083.t1 AT3G19950 29.371 286 135 8 3 246 68 328 2.98e-35 133
MS.gene052083.t1 AT3G19950 29.371 286 135 8 3 246 68 328 2.98e-35 133
MS.gene052083.t1 AT1G55530 30.303 264 129 7 11 245 6 243 1.03e-34 130
MS.gene052083.t1 AT3G13430 30.182 275 140 9 9 238 4 271 5.26e-32 122
MS.gene052083.t1 AT3G13430 30.182 275 140 9 9 238 4 271 5.26e-32 122
MS.gene052083.t1 AT3G13430 30.182 275 140 9 9 238 4 271 5.26e-32 122
MS.gene052083.t1 AT3G13430 30.182 275 140 9 9 238 4 271 5.26e-32 122
MS.gene052083.t1 AT3G10815 58.974 78 32 0 166 243 95 172 3.63e-28 109
MS.gene052083.t1 AT5G01980 42.735 117 64 1 128 244 289 402 4.62e-26 108
MS.gene052083.t1 AT5G08139 43.689 103 54 2 145 246 264 363 8.56e-26 107
MS.gene052083.t1 AT5G56340 44.231 104 50 2 135 238 210 305 1.68e-24 103
MS.gene052083.t1 AT1G60360 42.453 106 55 2 142 246 178 278 2.20e-24 102
MS.gene052083.t1 AT5G15820 44.681 94 51 1 154 246 252 345 5.12e-24 101
MS.gene052083.t1 AT3G02340 36.620 142 79 2 120 250 252 393 2.45e-23 100
MS.gene052083.t1 AT3G02340 36.620 142 79 2 120 250 252 393 2.45e-23 100
MS.gene052083.t1 AT4G26400 40.952 105 54 2 135 239 192 288 1.03e-22 98.2
MS.gene052083.t1 AT4G26400 40.952 105 54 2 135 239 192 288 1.03e-22 98.2
MS.gene052083.t1 AT5G64920 44.231 104 57 1 142 244 206 309 1.40e-22 97.4
MS.gene052083.t1 AT1G68180 53.521 71 33 0 166 236 112 182 2.94e-22 94.4
MS.gene052083.t1 AT3G60080 55.405 74 25 1 173 238 142 215 1.88e-21 93.6
MS.gene052083.t1 AT5G60820 44.211 95 45 3 150 239 328 419 3.23e-20 91.7
MS.gene052083.t1 AT5G20910 35.398 113 64 3 136 245 177 283 3.29e-20 90.1
MS.gene052083.t1 AT2G44330 42.157 102 45 2 173 260 71 172 3.34e-19 84.7
MS.gene052083.t1 AT1G26800 40.541 111 57 3 129 239 59 160 9.20e-18 81.3
MS.gene052083.t1 AT1G14200 29.448 163 85 3 75 237 22 154 2.69e-15 73.6
MS.gene052083.t1 AT5G02750 50.000 56 28 0 189 244 211 266 7.80e-15 74.3
MS.gene052083.t1 AT3G30460 43.478 69 35 2 174 238 77 145 4.38e-13 66.6
MS.gene052083.t1 AT3G30460 43.662 71 36 2 172 238 111 181 6.26e-13 67.0
MS.gene052083.t1 AT4G12190 39.062 64 35 2 176 236 7 69 9.38e-11 57.8
MS.gene052083.t1 AT3G55530 34.211 76 50 0 158 233 177 252 9.52e-11 62.4

Find 101 sgRNAs with CRISPR-Local

Find 108 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCGGCGGGAGGTTTGTCTTC+TGG 0.283501 2.2:-4889048 None:intergenic
GCAAACTGCACAGTGAATTT+CGG 0.334109 2.2:-4889426 None:intergenic
AAGCGGTTGGATTGACGATA+TGG 0.341428 2.2:+4889624 MS.gene052083:CDS
GCGTCTGAGAGTAGAATTTC+CGG 0.352120 2.2:+4889587 MS.gene052083:CDS
ACCGCCGCCGGCGTCTGCAC+CGG 0.356131 2.2:-4889156 None:intergenic
GAGGACAAACGACGTTGTTT+TGG 0.359117 2.2:-4888944 None:intergenic
CATCCTCAACGACGTCGTTT+TGG 0.362996 2.2:+4888886 MS.gene052083:CDS
AGAACGATTACAGGATTAAA+AGG 0.369503 2.2:-4889101 None:intergenic
GCCGGCGTCTGCACCGGCAC+CGG 0.370020 2.2:-4889150 None:intergenic
CAAGAAGAAGAAGCAGAACT+TGG 0.386359 2.2:+4889903 MS.gene052083:CDS
TCTCTTCGACGAATCCGTTT+TGG 0.397147 2.2:-4888971 None:intergenic
CCGGCGGTGGTGTCTTCTCT+AGG 0.412632 2.2:-4889131 None:intergenic
GCCGGTGCAGACGCCGGCGG+CGG 0.414591 2.2:+4889155 MS.gene052083:CDS
TCGGAGCTATTACTCGGTTC+CGG 0.420389 2.2:+4889272 MS.gene052083:CDS
TTAGAGAAAGACGTGGAATT+CGG 0.422858 2.2:+4889798 MS.gene052083:CDS
TACTCGGTTCCGGCTTCGAT+CGG 0.428438 2.2:+4889282 MS.gene052083:CDS
GTCTGCACCGGCACCGGCGG+TGG 0.429367 2.2:-4889144 None:intergenic
TTCGGATTCGATTTCTGAAT+CGG 0.431784 2.2:-4889408 None:intergenic
GCAGACGCCGGCGGCGGTAG+CGG 0.432430 2.2:+4889161 MS.gene052083:CDS
GGTCCACGGAGAACGATTAC+AGG 0.435957 2.2:-4889110 None:intergenic
TCTATCGCCGCCTTTGACGC+CGG 0.437391 2.2:-4889362 None:intergenic
CAAATCGAAATCAACGGTTT+CGG 0.449596 2.2:+4889323 MS.gene052083:CDS
CTCTAACAACCGATCGAAGC+CGG 0.463112 2.2:-4889291 None:intergenic
ATTGACGATATGGAGGTTAC+CGG 0.464101 2.2:+4889634 MS.gene052083:CDS
GTTTGTCCTCACTGCCAAAA+CGG 0.475086 2.2:+4888957 MS.gene052083:CDS
TAGAAGAATTTCTTTGACTG+TGG 0.477614 2.2:+4889763 MS.gene052083:CDS
TTCGCCGGTGGTCGGAGAGC+CGG 0.489916 2.2:+4889680 MS.gene052083:CDS
GCCGGTGCCGGTGCAGACGC+CGG 0.490347 2.2:+4889149 MS.gene052083:CDS
TCCGACATGCTTGGTGGAAG+TGG 0.494594 2.2:-4889254 None:intergenic
AGAAACCGCCGGTGATTGAC+CGG 0.496031 2.2:-4889000 None:intergenic
CGCTTCTTCATCAATCTGAC+CGG 0.496970 2.2:-4889606 None:intergenic
ATCAACACCGCTACCGCCGC+CGG 0.500661 2.2:-4889168 None:intergenic
GGCGTTACGACGTCTGCGGC+GGG 0.502562 2.2:-4889063 None:intergenic
AAAAGGCGAACGGCTGCCGC+CGG 0.509087 2.2:-4889084 None:intergenic
TCCATCTCCGTGTAAACAAT+CGG 0.509848 2.2:-4889716 None:intergenic
TTCAATGCGAAATTCGTGTC+CGG 0.510386 2.2:+4889532 MS.gene052083:CDS
ACCGATTGTTTACACGGAGA+TGG 0.520025 2.2:+4889715 MS.gene052083:CDS
GGTGCCGGTGCAGACGCCGG+CGG 0.520180 2.2:+4889152 MS.gene052083:CDS
GGAGAATCCACCGGCGTCAA+AGG 0.524083 2.2:+4889352 MS.gene052083:CDS
CAGATTGATGAAGAAGCGGT+TGG 0.524412 2.2:+4889611 MS.gene052083:CDS
CCGGGAGGTGGATTTGCTGT+TGG 0.525108 2.2:+4889653 MS.gene052083:CDS
TTGGAAGATTCGCCGGTGGT+CGG 0.527536 2.2:+4889672 MS.gene052083:CDS
GAAGACACCACCGCCGGTGC+CGG 0.529621 2.2:+4889137 MS.gene052083:CDS
ATATGGAGGTTACCGGGAGG+TGG 0.532142 2.2:+4889641 MS.gene052083:CDS
ATTCCGATTGCATTCTCCCA+TGG 0.535454 2.2:+4889507 MS.gene052083:CDS
ATCGCCGCCTTTGACGCCGG+TGG 0.538439 2.2:-4889359 None:intergenic
TGCAAAGAACAATTCGAGCT+AGG 0.538605 2.2:+4889446 MS.gene052083:CDS
AAGCCATGGGAGAATGCAAT+CGG 0.539317 2.2:-4889510 None:intergenic
GGCGTCTGCACCGGCACCGG+CGG 0.539489 2.2:-4889147 None:intergenic
AATAGCTCCGACATGCTTGG+TGG 0.540581 2.2:-4889260 None:intergenic
TGGTGGAAGTGGACGTAGAT+CGG 0.541171 2.2:-4889243 None:intergenic
AGAAGAATTTCTTTGACTGT+GGG 0.543294 2.2:+4889764 MS.gene052083:CDS
GATTCACGCCGGTCAATCAC+CGG 0.546800 2.2:+4888992 MS.gene052083:CDS
GCGGGAGGTTTGTCTTCTGG+AGG 0.550711 2.2:-4889045 None:intergenic
GAATCGGTGATTTCAACTGT+TGG 0.552700 2.2:-4889392 None:intergenic
TCAGTTACCGATTGTTTACA+CGG 0.553870 2.2:+4889709 MS.gene052083:CDS
CGCCGCAGACGTCGTAACGC+CGG 0.555138 2.2:+4889065 MS.gene052083:CDS
AGTAATAGCTCCGACATGCT+TGG 0.555247 2.2:-4889263 None:intergenic
GAATTTCGCATTGAAAGCCA+TGG 0.556326 2.2:-4889524 None:intergenic
CGGTCAGATTGATGAAGAAG+CGG 0.556476 2.2:+4889607 MS.gene052083:CDS
CGCAGACGTCGTAACGCCGG+CGG 0.559927 2.2:+4889068 MS.gene052083:CDS
GAAATTCGTGTCCGGTGTGT+CGG 0.561109 2.2:+4889540 MS.gene052083:CDS
CGGCGTTACGACGTCTGCGG+CGG 0.562313 2.2:-4889064 None:intergenic
TTCTCTCAAATCGAAATCAA+CGG 0.566290 2.2:+4889317 MS.gene052083:CDS
GCACCAAAACGACGTCGTTG+AGG 0.569778 2.2:-4888889 None:intergenic
AATCAACGGTTTCGGAAGGT+CGG 0.570591 2.2:+4889331 MS.gene052083:CDS
CGGAAGGTCGGAGAATCCAC+CGG 0.582211 2.2:+4889343 MS.gene052083:CDS
CAAAACGACGTCGTTGAGGA+TGG 0.582320 2.2:-4888885 None:intergenic
TGGTGTCTTCTCTAGGTCCA+CGG 0.584451 2.2:-4889124 None:intergenic
CGGTAGCGGTGTTGATAGCG+AGG 0.586301 2.2:+4889175 MS.gene052083:CDS
TTTGCTGTTGGAAGATTCGC+CGG 0.595189 2.2:+4889665 MS.gene052083:CDS
ATTGTTTACACGGAGATGGA+TGG 0.596456 2.2:+4889719 MS.gene052083:CDS
AAGAAGAAGAAGCAGAACTT+GGG 0.600997 2.2:+4889904 MS.gene052083:CDS
TTGACGATATGGAGGTTACC+GGG 0.603171 2.2:+4889635 MS.gene052083:CDS
TCGAAATCAACGGTTTCGGA+AGG 0.605406 2.2:+4889327 MS.gene052083:CDS
CGCCGGCGTTACGACGTCTG+CGG 0.608354 2.2:-4889067 None:intergenic
CCAACAGCAAATCCACCTCC+CGG 0.611076 2.2:-4889653 None:intergenic
AATTTCGCATTGAAAGCCAT+GGG 0.617522 2.2:-4889523 None:intergenic
GTTACGACGTCTGCGGCGGG+AGG 0.618296 2.2:-4889060 None:intergenic
CTCACCGGCTCTCCGACCAC+CGG 0.618605 2.2:-4889684 None:intergenic
GAATCCACCGGCGTCAAAGG+CGG 0.619728 2.2:+4889355 MS.gene052083:CDS
AGCATGTCGGAGCTATTACT+CGG 0.620643 2.2:+4889266 MS.gene052083:CDS
AATCGGTAACTGAATCTCAC+CGG 0.623794 2.2:-4889699 None:intergenic
ATGGGAGAATGCAATCGGAA+TGG 0.625343 2.2:-4889505 None:intergenic
CCTAGAGAAGACACCACCGC+CGG 0.626450 2.2:+4889131 MS.gene052083:CDS
CGGTTGGATTGACGATATGG+AGG 0.630916 2.2:+4889627 MS.gene052083:CDS
GGTAGCGGTGTTGATAGCGA+GGG 0.633690 2.2:+4889176 MS.gene052083:CDS
GGTAACTCGTGCCGACACAC+CGG 0.638241 2.2:-4889551 None:intergenic
AATAGAGTTAGAGAAAGACG+TGG 0.642562 2.2:+4889791 MS.gene052083:CDS
TCCACTTCCACCAAGCATGT+CGG 0.655861 2.2:+4889253 MS.gene052083:CDS
AATCCTGTAATCGTTCTCCG+TGG 0.656883 2.2:+4889107 MS.gene052083:CDS
TCACGCCGGTCAATCACCGG+CGG 0.670342 2.2:+4888995 MS.gene052083:CDS
TCGGCGAAAAGAGAAACCGC+CGG 0.670628 2.2:-4889011 None:intergenic
GAATGGTAAAGATGATTACA+CGG 0.678082 2.2:-4889488 None:intergenic
GTAGCGGTGTTGATAGCGAG+GGG 0.678382 2.2:+4889177 MS.gene052083:CDS
TTATACTATGAAGACAGTAA+CGG 0.680959 2.2:+4889218 MS.gene052083:CDS
TTACAGGATTAAAAGGCGAA+CGG 0.681942 2.2:-4889094 None:intergenic
GCTGTTGGAAGATTCGCCGG+TGG 0.685393 2.2:+4889668 MS.gene052083:CDS
TCTGGAGGACTGAATACCGT+CGG 0.709231 2.2:-4889030 None:intergenic
TTCGTCGAAGAGATTCACGC+CGG 0.729026 2.2:+4888981 MS.gene052083:CDS
ACGATATGGAGGTTACCGGG+AGG 0.773215 2.2:+4889638 MS.gene052083:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GAAATTTTTTATCGTTTTTT+GGG + chr2.2:4889831-4889850 MS.gene052083:CDS 15.0%
!!! CGAAATTTTTTATCGTTTTT+TGG + chr2.2:4889830-4889849 MS.gene052083:CDS 20.0%
! TTATACTATGAAGACAGTAA+CGG + chr2.2:4889218-4889237 MS.gene052083:CDS 25.0%
AGAACGATTACAGGATTAAA+AGG - chr2.2:4889104-4889123 None:intergenic 30.0%
AGAAGAATTTCTTTGACTGT+GGG + chr2.2:4889764-4889783 MS.gene052083:CDS 30.0%
GAATGGTAAAGATGATTACA+CGG - chr2.2:4889491-4889510 None:intergenic 30.0%
TAGAAGAATTTCTTTGACTG+TGG + chr2.2:4889763-4889782 MS.gene052083:CDS 30.0%
TTCTCTCAAATCGAAATCAA+CGG + chr2.2:4889317-4889336 MS.gene052083:CDS 30.0%
! AACTTAAATCGTAGCTTTTC+TGG + chr2.2:4889860-4889879 MS.gene052083:CDS 30.0%
AAGAAGAAGAAGCAGAACTT+GGG + chr2.2:4889904-4889923 MS.gene052083:CDS 35.0%
AATAGAGTTAGAGAAAGACG+TGG + chr2.2:4889791-4889810 MS.gene052083:CDS 35.0%
AATTTCGCATTGAAAGCCAT+GGG - chr2.2:4889526-4889545 None:intergenic 35.0%
CAAATCGAAATCAACGGTTT+CGG + chr2.2:4889323-4889342 MS.gene052083:CDS 35.0%
TTACAGGATTAAAAGGCGAA+CGG - chr2.2:4889097-4889116 None:intergenic 35.0%
TTAGAGAAAGACGTGGAATT+CGG + chr2.2:4889798-4889817 MS.gene052083:CDS 35.0%
TTCGGATTCGATTTCTGAAT+CGG - chr2.2:4889411-4889430 None:intergenic 35.0%
! TCAGTTACCGATTGTTTACA+CGG + chr2.2:4889709-4889728 MS.gene052083:CDS 35.0%
AATCGGTAACTGAATCTCAC+CGG - chr2.2:4889702-4889721 None:intergenic 40.0%
ATTGACGATATGGAGGTTAC+CGG + chr2.2:4889634-4889653 MS.gene052083:CDS 40.0%
ATTGTTTACACGGAGATGGA+TGG + chr2.2:4889719-4889738 MS.gene052083:CDS 40.0%
CAAGAAGAAGAAGCAGAACT+TGG + chr2.2:4889903-4889922 MS.gene052083:CDS 40.0%
GAATCGGTGATTTCAACTGT+TGG - chr2.2:4889395-4889414 None:intergenic 40.0%
GAATTTCGCATTGAAAGCCA+TGG - chr2.2:4889527-4889546 None:intergenic 40.0%
GCAAACTGCACAGTGAATTT+CGG - chr2.2:4889429-4889448 None:intergenic 40.0%
TCCATCTCCGTGTAAACAAT+CGG - chr2.2:4889719-4889738 None:intergenic 40.0%
TGCAAAGAACAATTCGAGCT+AGG + chr2.2:4889446-4889465 MS.gene052083:CDS 40.0%
TTCAATGCGAAATTCGTGTC+CGG + chr2.2:4889532-4889551 MS.gene052083:CDS 40.0%
AAGCCATGGGAGAATGCAAT+CGG - chr2.2:4889513-4889532 None:intergenic 45.0%
AAGCGGTTGGATTGACGATA+TGG + chr2.2:4889624-4889643 MS.gene052083:CDS 45.0%
AATCAACGGTTTCGGAAGGT+CGG + chr2.2:4889331-4889350 MS.gene052083:CDS 45.0%
AATCCTGTAATCGTTCTCCG+TGG + chr2.2:4889107-4889126 MS.gene052083:CDS 45.0%
ACCGATTGTTTACACGGAGA+TGG + chr2.2:4889715-4889734 MS.gene052083:CDS 45.0%
AGCATGTCGGAGCTATTACT+CGG + chr2.2:4889266-4889285 MS.gene052083:CDS 45.0%
AGTAATAGCTCCGACATGCT+TGG - chr2.2:4889266-4889285 None:intergenic 45.0%
ATGGGAGAATGCAATCGGAA+TGG - chr2.2:4889508-4889527 None:intergenic 45.0%
ATTCCGATTGCATTCTCCCA+TGG + chr2.2:4889507-4889526 MS.gene052083:CDS 45.0%
CAGATTGATGAAGAAGCGGT+TGG + chr2.2:4889611-4889630 MS.gene052083:CDS 45.0%
CGCTTCTTCATCAATCTGAC+CGG - chr2.2:4889609-4889628 None:intergenic 45.0%
CGGTCAGATTGATGAAGAAG+CGG + chr2.2:4889607-4889626 MS.gene052083:CDS 45.0%
GCGTCTGAGAGTAGAATTTC+CGG + chr2.2:4889587-4889606 MS.gene052083:CDS 45.0%
GTTTGTCCTCACTGCCAAAA+CGG + chr2.2:4888957-4888976 MS.gene052083:CDS 45.0%
TCGAAATCAACGGTTTCGGA+AGG + chr2.2:4889327-4889346 MS.gene052083:CDS 45.0%
TTGACGATATGGAGGTTACC+GGG + chr2.2:4889635-4889654 MS.gene052083:CDS 45.0%
! GAGGACAAACGACGTTGTTT+TGG - chr2.2:4888947-4888966 None:intergenic 45.0%
! TCTCTTCGACGAATCCGTTT+TGG - chr2.2:4888974-4888993 None:intergenic 45.0%
!! ACTCTCAGACGCGTTTTGAT+CGG - chr2.2:4889579-4889598 None:intergenic 45.0%
!! TTTGCTGTTGGAAGATTCGC+CGG + chr2.2:4889665-4889684 MS.gene052083:CDS 45.0%
AATAGCTCCGACATGCTTGG+TGG - chr2.2:4889263-4889282 None:intergenic 50.0%
CAAAACGACGTCGTTGAGGA+TGG - chr2.2:4888888-4888907 None:intergenic 50.0%
CGGTTGGATTGACGATATGG+AGG + chr2.2:4889627-4889646 MS.gene052083:CDS 50.0%
CTCTAACAACCGATCGAAGC+CGG - chr2.2:4889294-4889313 None:intergenic 50.0%
GAAATTCGTGTCCGGTGTGT+CGG + chr2.2:4889540-4889559 MS.gene052083:CDS 50.0%
TCCACTTCCACCAAGCATGT+CGG + chr2.2:4889253-4889272 MS.gene052083:CDS 50.0%
TCGGAGCTATTACTCGGTTC+CGG + chr2.2:4889272-4889291 MS.gene052083:CDS 50.0%
TCTGGAGGACTGAATACCGT+CGG - chr2.2:4889033-4889052 None:intergenic 50.0%
TGGTGGAAGTGGACGTAGAT+CGG - chr2.2:4889246-4889265 None:intergenic 50.0%
TGGTGTCTTCTCTAGGTCCA+CGG - chr2.2:4889127-4889146 None:intergenic 50.0%
TTCGTCGAAGAGATTCACGC+CGG + chr2.2:4888981-4889000 MS.gene052083:CDS 50.0%
! CATCCTCAACGACGTCGTTT+TGG + chr2.2:4888886-4888905 MS.gene052083:CDS 50.0%
!! ACGAATCCGTTTTGGCAGTG+AGG - chr2.2:4888966-4888985 None:intergenic 50.0%
!! TCAGACGCGTTTTGATCGGA+CGG - chr2.2:4889575-4889594 None:intergenic 50.0%
ACGATATGGAGGTTACCGGG+AGG + chr2.2:4889638-4889657 MS.gene052083:CDS 55.0%
AGAAACCGCCGGTGATTGAC+CGG - chr2.2:4889003-4889022 None:intergenic 55.0%
ATATGGAGGTTACCGGGAGG+TGG + chr2.2:4889641-4889660 MS.gene052083:CDS 55.0%
CCAACAGCAAATCCACCTCC+CGG - chr2.2:4889656-4889675 None:intergenic 55.0%
GATTCACGCCGGTCAATCAC+CGG + chr2.2:4888992-4889011 MS.gene052083:CDS 55.0%
GCACCAAAACGACGTCGTTG+AGG - chr2.2:4888892-4888911 None:intergenic 55.0%
GGTCCACGGAGAACGATTAC+AGG - chr2.2:4889113-4889132 None:intergenic 55.0%
TACTCGGTTCCGGCTTCGAT+CGG + chr2.2:4889282-4889301 MS.gene052083:CDS 55.0%
TCGGCGAAAAGAGAAACCGC+CGG - chr2.2:4889014-4889033 None:intergenic 55.0%
TTGGAAGATTCGCCGGTGGT+CGG + chr2.2:4889672-4889691 MS.gene052083:CDS 55.0%
! GCGGTTTCTCTTTTCGCCGA+CGG + chr2.2:4889014-4889033 MS.gene052083:CDS 55.0%
! TCCGACATGCTTGGTGGAAG+TGG - chr2.2:4889257-4889276 None:intergenic 55.0%
!! GGTAGCGGTGTTGATAGCGA+GGG + chr2.2:4889176-4889195 MS.gene052083:CDS 55.0%
!! GTAGCGGTGTTGATAGCGAG+GGG + chr2.2:4889177-4889196 MS.gene052083:CDS 55.0%
CCTAGAGAAGACACCACCGC+CGG + chr2.2:4889131-4889150 MS.gene052083:CDS 60.0%
CGGAAGGTCGGAGAATCCAC+CGG + chr2.2:4889343-4889362 MS.gene052083:CDS 60.0%
GAATCCACCGGCGTCAAAGG+CGG + chr2.2:4889355-4889374 MS.gene052083:CDS 60.0%
GCGGGAGGTTTGTCTTCTGG+AGG - chr2.2:4889048-4889067 None:intergenic 60.0%
GCTGTTGGAAGATTCGCCGG+TGG + chr2.2:4889668-4889687 MS.gene052083:CDS 60.0%
GGAGAATCCACCGGCGTCAA+AGG + chr2.2:4889352-4889371 MS.gene052083:CDS 60.0%
TCTATCGCCGCCTTTGACGC+CGG - chr2.2:4889365-4889384 None:intergenic 60.0%
! GGTAACTCGTGCCGACACAC+CGG - chr2.2:4889554-4889573 None:intergenic 60.0%
!! CCGGGAGGTGGATTTGCTGT+TGG + chr2.2:4889653-4889672 MS.gene052083:CDS 60.0%
!! CGGTAGCGGTGTTGATAGCG+AGG + chr2.2:4889175-4889194 MS.gene052083:CDS 60.0%
AAAAGGCGAACGGCTGCCGC+CGG - chr2.2:4889087-4889106 None:intergenic 65.0%
ATCAACACCGCTACCGCCGC+CGG - chr2.2:4889171-4889190 None:intergenic 65.0%
CCGGCGGTGGTGTCTTCTCT+AGG - chr2.2:4889134-4889153 None:intergenic 65.0%
GCGGCGGGAGGTTTGTCTTC+TGG - chr2.2:4889051-4889070 None:intergenic 65.0%
TCACGCCGGTCAATCACCGG+CGG + chr2.2:4888995-4889014 MS.gene052083:CDS 65.0%
ATCGCCGCCTTTGACGCCGG+TGG - chr2.2:4889362-4889381 None:intergenic 70.0%
CGCAGACGTCGTAACGCCGG+CGG + chr2.2:4889068-4889087 MS.gene052083:CDS 70.0%
CGCCGCAGACGTCGTAACGC+CGG + chr2.2:4889065-4889084 MS.gene052083:CDS 70.0%
CGCCGGCGTTACGACGTCTG+CGG - chr2.2:4889070-4889089 None:intergenic 70.0%
CGGCGTTACGACGTCTGCGG+CGG - chr2.2:4889067-4889086 None:intergenic 70.0%
GAAGACACCACCGCCGGTGC+CGG + chr2.2:4889137-4889156 MS.gene052083:CDS 70.0%
GGCGTTACGACGTCTGCGGC+GGG - chr2.2:4889066-4889085 None:intergenic 70.0%
GTTACGACGTCTGCGGCGGG+AGG - chr2.2:4889063-4889082 None:intergenic 70.0%
TTCGCCGGTGGTCGGAGAGC+CGG + chr2.2:4889680-4889699 MS.gene052083:CDS 70.0%
!! CTCACCGGCTCTCCGACCAC+CGG - chr2.2:4889687-4889706 None:intergenic 70.0%
! ACCGCCGCCGGCGTCTGCAC+CGG - chr2.2:4889159-4889178 None:intergenic 80.0%
! GCAGACGCCGGCGGCGGTAG+CGG + chr2.2:4889161-4889180 MS.gene052083:CDS 80.0%
!! GCCGGCGTCTGCACCGGCAC+CGG - chr2.2:4889153-4889172 None:intergenic 80.0%
!! GGCGTCTGCACCGGCACCGG+CGG - chr2.2:4889150-4889169 None:intergenic 80.0%
!!! GCCGGTGCCGGTGCAGACGC+CGG + chr2.2:4889149-4889168 MS.gene052083:CDS 80.0%
!!! GGTGCCGGTGCAGACGCCGG+CGG + chr2.2:4889152-4889171 MS.gene052083:CDS 80.0%
!!! GTCTGCACCGGCACCGGCGG+TGG - chr2.2:4889147-4889166 None:intergenic 80.0%
! GCCGGTGCAGACGCCGGCGG+CGG + chr2.2:4889155-4889174 MS.gene052083:CDS 85.0%


Chromosome Type Strat End Strand Name
chr2.2 gene 4888864 4889940 4888864 ID=MS.gene052083
chr2.2 mRNA 4888864 4889940 4888864 ID=MS.gene052083.t1;Parent=MS.gene052083
chr2.2 exon 4888864 4889940 4888864 ID=MS.gene052083.t1.exon1;Parent=MS.gene052083.t1
chr2.2 CDS 4888864 4889940 4888864 ID=cds.MS.gene052083.t1;Parent=MS.gene052083.t1
Gene Sequence

>MS.gene052083

ATGAACTCGGAAACTGAAACACCATCCTCAACGACGTCGTTTTGGTGCTACAGCTGCACGCGTTTCATTCACATCTTGAACCAAAACAACGTCGTTTGTCCTCACTGCCAAAACGGATTCGTCGAAGAGATTCACGCCGGTCAATCACCGGCGGTTTCTCTTTTCGCCGACGGTATTCAGTCCTCCAGAAGACAAACCTCCCGCCGCAGACGTCGTAACGCCGGCGGCAGCCGTTCGCCTTTTAATCCTGTAATCGTTCTCCGTGGACCTAGAGAAGACACCACCGCCGGTGCCGGTGCAGACGCCGGCGGCGGTAGCGGTGTTGATAGCGAGGGGAATACAAGTAGTTTTGAATTATACTATGAAGACAGTAACGGTACCGATCTACGTCCACTTCCACCAAGCATGTCGGAGCTATTACTCGGTTCCGGCTTCGATCGGTTGTTAGAGCAATTCTCTCAAATCGAAATCAACGGTTTCGGAAGGTCGGAGAATCCACCGGCGTCAAAGGCGGCGATAGAGTCAATACCAACAGTTGAAATCACCGATTCAGAAATCGAATCCGAAATTCACTGTGCAGTTTGCAAAGAACAATTCGAGCTAGGTTCTGAAGCGCGTAAGATGCCGTGTAATCATCTTTACCATTCCGATTGCATTCTCCCATGGCTTTCAATGCGAAATTCGTGTCCGGTGTGTCGGCACGAGTTACCGTCCGATCAAAACGCGTCTGAGAGTAGAATTTCCGGTCAGATTGATGAAGAAGCGGTTGGATTGACGATATGGAGGTTACCGGGAGGTGGATTTGCTGTTGGAAGATTCGCCGGTGGTCGGAGAGCCGGTGAGATTCAGTTACCGATTGTTTACACGGAGATGGATGGTAACAATTCAAACGAAGATTCTAGAAGAATTTCTTTGACTGTGGGAAGTAATAGAGTTAGAGAAAGACGTGGAATTCGGAGAATTTTTCGAAATTTTTTATCGTTTTTTGGGAATGTCAACTTAAATCGTAGCTTTTCTGGTTCGTTGTTTAGTAGAAGCTCAAGAAGAAGAAGCAGAACTTGGGTTACAGAAGAATAA
Protein sequence

>MS.gene052083.t1

MNSETETPSSTTSFWCYSCTRFIHILNQNNVVCPHCQNGFVEEIHAGQSPAVSLFADGIQSSRRQTSRRRRRNAGGSRSPFNPVIVLRGPREDTTAGAGADAGGGSGVDSEGNTSSFELYYEDSNGTDLRPLPPSMSELLLGSGFDRLLEQFSQIEINGFGRSENPPASKAAIESIPTVEITDSEIESEIHCAVCKEQFELGSEARKMPCNHLYHSDCILPWLSMRNSCPVCRHELPSDQNASESRISGQIDEEAVGLTIWRLPGGGFAVGRFAGGRRAGEIQLPIVYTEMDGNNSNEDSRRISLTVGSNRVRERRGIRRIFRNFLSFFGNVNLNRSFSGSLFSRSSRRRSRTWVTEE