AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene78570

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene78570.t1 MTR_7g112700 99.344 305 2 0 1 305 1 305 0.0 630
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene78570.t1 AT3G05520 71.525 295 84 0 11 305 41 335 2.06e-167 468
MS.gene78570.t1 AT3G05520 71.525 295 84 0 11 305 14 308 2.73e-167 467
MS.gene78570.t1 AT3G05520 71.525 295 84 0 11 305 14 308 1.89e-166 468

Find 60 sgRNAs with CRISPR-Local

Find 164 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTTCTGTCTACTGTGTAAA+TGG 0.194304 7.4:+3682606 MS.gene78570:CDS
ATGGGAGTTGGTGCTCAATT+TGG 0.234047 7.4:+3682834 MS.gene78570:CDS
AAGTGTGATTTGTTGTAAAT+TGG 0.238558 7.4:-3680996 None:intergenic
GGCATAGCCCACAAAATTTC+TGG 0.238634 7.4:+3682688 MS.gene78570:CDS
ATTGCTACTTGAGCAGTTCT+AGG 0.251268 7.4:-3681321 None:intergenic
CAACAAACAGTGGACGTAAA+AGG 0.272987 7.4:+3682878 MS.gene78570:CDS
CCTTCCTGATTCTACTTTCA+AGG 0.294319 7.4:+3683476 MS.gene78570:CDS
CTGCATACATTGAAGAATTT+CGG 0.307423 7.4:+3681715 MS.gene78570:CDS
TAGACAGAACAGACACCTTT+TGG 0.313335 7.4:-3682594 None:intergenic
GGAAATAAGGTGCGGGTGAC+TGG 0.335841 7.4:-3683602 None:intergenic
CAGGTATTGGTTACTTCATA+TGG 0.389015 7.4:+3681270 MS.gene78570:intron
TTTCTTCTCAATTCTCCTCC+TGG 0.404211 7.4:+3680807 MS.gene78570:CDS
ATGGCAAGCGCACAATCATC+AGG 0.408097 7.4:-3683277 None:intergenic
ATAATTTATTGCAGGATCTT+CGG 0.419155 7.4:+3683570 MS.gene78570:intron
TGTTTATTGCAGATTCAGTC+TGG 0.425383 7.4:+3682536 MS.gene78570:intron
GTGACGAATAATGCTTGATA+TGG 0.433415 7.4:-3683296 None:intergenic
GTTGTAAATTGGAAATGCTT+CGG 0.434287 7.4:-3680985 None:intergenic
AGTGTTATGCCATGGAAATA+AGG 0.442011 7.4:-3683615 None:intergenic
GTTGAAGAAGTTTATCCAAA+AGG 0.446811 7.4:+3682579 MS.gene78570:CDS
GGACGTAAAAGGGAAATTGC+AGG 0.448824 7.4:+3682889 MS.gene78570:CDS
GAAATTCAATACGTTGCAAA+AGG 0.451513 7.4:+3680831 MS.gene78570:CDS
CGAACCATCATCGTTGAGAA+TGG 0.453171 7.4:-3680946 None:intergenic
AACAAACAGTGGACGTAAAA+GGG 0.455021 7.4:+3682879 MS.gene78570:CDS
GTTACATCTCCGCTTCGGTC+AGG 0.469021 7.4:-3681035 None:intergenic
GGTACCTTGAAAGTAGAATC+AGG 0.469238 7.4:-3683480 None:intergenic
AAGCAAGGTACTCTGTTTCA+TGG 0.469951 7.4:-3683318 None:intergenic
CTGTTGTGATTTCTGCTGCT+AGG 0.485098 7.4:+3682667 MS.gene78570:CDS
TTGTTTATAGCAATGGGAGT+TGG 0.503772 7.4:+3682822 MS.gene78570:intron
ATCTCAAAAGAACTTGGCAT+TGG 0.506508 7.4:+3683662 MS.gene78570:CDS
GCAAGCTCAAAATCAGAACC+TGG 0.521132 7.4:-3682645 None:intergenic
AAATCCATTCTCAACGATGA+TGG 0.529327 7.4:+3680942 MS.gene78570:CDS
AGTTAGTTACATCTCCGCTT+CGG 0.532930 7.4:-3681040 None:intergenic
GTTCTGTCTACTGTGTAAAT+GGG 0.536017 7.4:+3682607 MS.gene78570:CDS
AGAGACATCTCAAAAGAACT+TGG 0.537783 7.4:+3683656 MS.gene78570:CDS
TACTTCATATGGCGAGCTTG+AGG 0.551778 7.4:+3681281 MS.gene78570:CDS
TCACCCGCACCTTATTTCCA+TGG 0.565832 7.4:+3683606 MS.gene78570:CDS
AATTCTTCAATGTATGCAGA+TGG 0.567391 7.4:-3681711 None:intergenic
AATTGCAAAGTGTTATGCCA+TGG 0.570664 7.4:-3683623 None:intergenic
TACAGAGGTGAGACCTGCAC+TGG 0.572920 7.4:+3681677 MS.gene78570:CDS
GGAAGTTCTTCATCCAGTGC+AGG 0.573658 7.4:-3681690 None:intergenic
GGGAAGGATACTGAGGGCCC+AGG 0.574847 7.4:+3682627 MS.gene78570:CDS
GCAACGTATTGAATTTCACC+AGG 0.590563 7.4:-3680825 None:intergenic
CAAGCTCAAAATCAGAACCT+GGG 0.599793 7.4:-3682644 None:intergenic
CCTTGAAAGTAGAATCAGGA+AGG 0.604482 7.4:-3683476 None:intergenic
TGTCTACTGTGTAAATGGGA+AGG 0.606579 7.4:+3682611 MS.gene78570:CDS
ACACACTTACTTGTTTAACA+TGG 0.606781 7.4:-3681350 None:intergenic
TGGCAAGCGCACAATCATCA+GGG 0.608171 7.4:-3683276 None:intergenic
CTTTCAATGCCTGACCGAAG+CGG 0.608367 7.4:+3681026 MS.gene78570:CDS
AGAGTACCTTGCTTCTCTTG+AGG 0.615925 7.4:+3683327 MS.gene78570:CDS
ATTTATTGCAGGATCTTCGG+AGG 0.625709 7.4:+3683573 MS.gene78570:intron
ATGCCATGGAAATAAGGTGC+GGG 0.634497 7.4:-3683609 None:intergenic
AGAAAGTTGAAATCGCGAAG+TGG 0.636965 7.4:+3680784 MS.gene78570:CDS
TCAGAACCTCAAGAGAAGCA+AGG 0.655359 7.4:-3683333 None:intergenic
TGTAAATGGGAAGGATACTG+AGG 0.655670 7.4:+3682620 MS.gene78570:CDS
GTAAATGGGAAGGATACTGA+GGG 0.655998 7.4:+3682621 MS.gene78570:CDS
CAAAGACGACCAACAAACAG+TGG 0.675897 7.4:+3682868 MS.gene78570:CDS
GGCAAGCGCACAATCATCAG+GGG 0.679461 7.4:-3683275 None:intergenic
TATGTTTCAGGTCTGTACAG+AGG 0.688165 7.4:+3681662 MS.gene78570:intron
ACGTATTGAATTTCACCAGG+AGG 0.702006 7.4:-3680822 None:intergenic
TATGCCATGGAAATAAGGTG+CGG 0.767155 7.4:-3683610 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAATTATTTTGGTTAAAATA+AGG + chr7.4:3682282-3682301 MS.gene78570:intron 10.0%
!! AATATAGGATTATATAATAG+AGG - chr7.4:3683505-3683524 None:intergenic 15.0%
!! ATATAGGATTATATAATAGA+GGG - chr7.4:3683504-3683523 None:intergenic 15.0%
!! TTTGTATATATATTCGAAAA+TGG + chr7.4:3683197-3683216 MS.gene78570:intron 15.0%
!!! AATTTTTCAATTAATTGGAT+CGG + chr7.4:3681120-3681139 MS.gene78570:intron 15.0%
!!! ATCATTTTTATCCTATTTTT+AGG + chr7.4:3682975-3682994 MS.gene78570:intron 15.0%
!!! CTTTGTTGTATTAATTATTT+TGG + chr7.4:3682271-3682290 MS.gene78570:intron 15.0%
!!! TAATTGTTTTCTAATTCTTA+GGG + chr7.4:3681075-3681094 MS.gene78570:intron 15.0%
!!! TTAATTGTTTTCTAATTCTT+AGG + chr7.4:3681074-3681093 MS.gene78570:intron 15.0%
!!! TTTTAAAATGACTGATAAAT+TGG + chr7.4:3682351-3682370 MS.gene78570:intron 15.0%
!! AAAATTTCAATCATGGAAAT+TGG - chr7.4:3681750-3681769 None:intergenic 20.0%
!! AAGTAAAATATTTGAGAGAA+AGG - chr7.4:3682241-3682260 None:intergenic 20.0%
!! AATTTCAATAAGCAGAAAAT+TGG - chr7.4:3681461-3681480 None:intergenic 20.0%
!! ATTAATACAACAAAGAATTG+TGG - chr7.4:3682266-3682285 None:intergenic 20.0%
!! ATTAGAAGGAAATATTTAGT+TGG + chr7.4:3681525-3681544 MS.gene78570:intron 20.0%
!! ATTAGATTGTCAAAAATAAG+TGG - chr7.4:3683156-3683175 None:intergenic 20.0%
!! GACATAAAAAATTTCAATCA+TGG - chr7.4:3681757-3681776 None:intergenic 20.0%
!! TATATATACAAAAAGAGACA+AGG - chr7.4:3683189-3683208 None:intergenic 20.0%
!! TATTAAAGAAGAGATCTATT+TGG - chr7.4:3681966-3681985 None:intergenic 20.0%
!! TGCAATAAATTATAATCAGA+AGG - chr7.4:3683563-3683582 None:intergenic 20.0%
!! TTCTGATTATAATTTATTGC+AGG + chr7.4:3683562-3683581 MS.gene78570:intron 20.0%
!! TTTACTTAAAAATGAGCTTT+AGG + chr7.4:3681389-3681408 MS.gene78570:intron 20.0%
!!! AATTTTCTGCTTATTGAAAT+TGG + chr7.4:3681460-3681479 MS.gene78570:intron 20.0%
!!! ACAATGATTTTTTTTGTTGA+GGG + chr7.4:3681820-3681839 MS.gene78570:intron 20.0%
!!! CTTTTGATTTATTTATGTTC+AGG + chr7.4:3683252-3683271 MS.gene78570:intron 20.0%
!!! TTTTTATCCTATTTTTAGGT+CGG + chr7.4:3682979-3682998 MS.gene78570:intron 20.0%
!!! TTTTTCTTTTTTTTTGACGT+TGG + chr7.4:3681155-3681174 MS.gene78570:intron 20.0%
! AAATATTTAGTTGGAGGTTA+GGG + chr7.4:3681534-3681553 MS.gene78570:intron 25.0%
! AACAAAAAAAATCATTGTGC+GGG - chr7.4:3681818-3681837 None:intergenic 25.0%
! AAGATTAACGGAATATCAAA+TGG - chr7.4:3681783-3681802 None:intergenic 25.0%
! ACAAATCTATACTTGTCAAA+AGG - chr7.4:3682060-3682079 None:intergenic 25.0%
! AGTAAAACAGCAATTAATCT+TGG + chr7.4:3682326-3682345 MS.gene78570:intron 25.0%
! ATAATTTATTGCAGGATCTT+CGG + chr7.4:3683570-3683589 MS.gene78570:intron 25.0%
! ATTCGAAAATGGTAAGATAT+AGG + chr7.4:3683208-3683227 MS.gene78570:intron 25.0%
! CAACAAAAAAAATCATTGTG+CGG - chr7.4:3681819-3681838 None:intergenic 25.0%
! CATAGGCTTAACATAAATAT+AGG - chr7.4:3683520-3683539 None:intergenic 25.0%
! GACAAATTGAAATGTAAAAG+TGG - chr7.4:3680896-3680915 None:intergenic 25.0%
! GACAATTTGATATATGTTTC+AGG + chr7.4:3681650-3681669 MS.gene78570:intron 25.0%
! GTGAAAACATTGAAATTAGA+AGG + chr7.4:3681511-3681530 MS.gene78570:intron 25.0%
! TAAACAAAAGCCAAAGAAAA+AGG - chr7.4:3682809-3682828 None:intergenic 25.0%
! TAAAGCAAAACAGGAAAATT+TGG + chr7.4:3681559-3681578 MS.gene78570:intron 25.0%
! TAGGTAAGATCATTTATGTT+TGG + chr7.4:3681408-3681427 MS.gene78570:intron 25.0%
! TCACTTCAGTAAAAGATTAA+CGG - chr7.4:3681795-3681814 None:intergenic 25.0%
!! AACACTTTAAAAGAAAAGGA+GGG + chr7.4:3682395-3682414 MS.gene78570:intron 25.0%
!!! AAGTGTGATTTGTTGTAAAT+TGG - chr7.4:3680999-3681018 None:intergenic 25.0%
!!! CAATGATTTTTTTTGTTGAG+GGG + chr7.4:3681821-3681840 MS.gene78570:intron 25.0%
!!! CACAATGATTTTTTTTGTTG+AGG + chr7.4:3681819-3681838 MS.gene78570:intron 25.0%
AATTCTTCAATGTATGCAGA+TGG - chr7.4:3681714-3681733 None:intergenic 30.0%
ACACACTTACTTGTTTAACA+TGG - chr7.4:3681353-3681372 None:intergenic 30.0%
AGAAGGAAATATTTAGTTGG+AGG + chr7.4:3681528-3681547 MS.gene78570:intron 30.0%
CAAAAATCAACGACTATCAT+AGG - chr7.4:3683537-3683556 None:intergenic 30.0%
CTGCATACATTGAAGAATTT+CGG + chr7.4:3681715-3681734 MS.gene78570:CDS 30.0%
GAAATATTTAGTTGGAGGTT+AGG + chr7.4:3681533-3681552 MS.gene78570:intron 30.0%
GAAATTCAATACGTTGCAAA+AGG + chr7.4:3680831-3680850 MS.gene78570:CDS 30.0%
GATTGTCAAAAATAAGTGGA+TGG - chr7.4:3683152-3683171 None:intergenic 30.0%
GTTGAAGAAGTTTATCCAAA+AGG + chr7.4:3682579-3682598 MS.gene78570:CDS 30.0%
GTTGTAAATTGGAAATGCTT+CGG - chr7.4:3680988-3681007 None:intergenic 30.0%
TGCTTATTGAAATTGGTTGT+TGG + chr7.4:3681467-3681486 MS.gene78570:intron 30.0%
TTTATGTTTGGATTTGTGTG+TGG + chr7.4:3681420-3681439 MS.gene78570:intron 30.0%
! AGTTAGTACTCCTTTTTCTT+TGG + chr7.4:3682796-3682815 MS.gene78570:intron 30.0%
! CAACACTTTAAAAGAAAAGG+AGG + chr7.4:3682394-3682413 MS.gene78570:intron 30.0%
! GAGCAACACTTTAAAAGAAA+AGG + chr7.4:3682391-3682410 MS.gene78570:intron 30.0%
!! AGTCAAAGAATGCTGATTTA+TGG - chr7.4:3683082-3683101 None:intergenic 30.0%
!! TGGCTTTTGTTTATAGCAAT+GGG + chr7.4:3682816-3682835 MS.gene78570:intron 30.0%
!! TTGGCTTTTGTTTATAGCAA+TGG + chr7.4:3682815-3682834 MS.gene78570:intron 30.0%
!!! CTTTTTTTTTGACGTTGGAT+CGG + chr7.4:3681160-3681179 MS.gene78570:intron 30.0%
AAATCCATTCTCAACGATGA+TGG + chr7.4:3680942-3680961 MS.gene78570:CDS 35.0%
AACAAACAGTGGACGTAAAA+GGG + chr7.4:3682879-3682898 MS.gene78570:CDS 35.0%
ACAGCAACACAAGTCATATT+TGG - chr7.4:3681593-3681612 None:intergenic 35.0%
AGAGACATCTCAAAAGAACT+TGG + chr7.4:3683656-3683675 MS.gene78570:CDS 35.0%
AGTGTTATGCCATGGAAATA+AGG - chr7.4:3683618-3683637 None:intergenic 35.0%
ATATGAAGCCTGTCAAGTTA+TGG - chr7.4:3683451-3683470 None:intergenic 35.0%
ATCTCAAAAGAACTTGGCAT+TGG + chr7.4:3683662-3683681 MS.gene78570:CDS 35.0%
GAATTCGATTTCTTGTAGCT+AGG + chr7.4:3683354-3683373 MS.gene78570:intron 35.0%
GGAATGAAAATGAAATGCTG+AGG - chr7.4:3680875-3680894 None:intergenic 35.0%
GTGACGAATAATGCTTGATA+TGG - chr7.4:3683299-3683318 None:intergenic 35.0%
GTTAGGGTATAAAGCAAAAC+AGG + chr7.4:3681550-3681569 MS.gene78570:intron 35.0%
GTTCTGTCTACTGTGTAAAT+GGG + chr7.4:3682607-3682626 MS.gene78570:CDS 35.0%
TGAAATTGGTTGTTGGAACT+TGG + chr7.4:3681474-3681493 MS.gene78570:intron 35.0%
TGTTCTGTCTACTGTGTAAA+TGG + chr7.4:3682606-3682625 MS.gene78570:CDS 35.0%
TGTTTATTGCAGATTCAGTC+TGG + chr7.4:3682536-3682555 MS.gene78570:intron 35.0%
TTCAATCATGGAAATTGGAG+AGG - chr7.4:3681745-3681764 None:intergenic 35.0%
TTGTTTATAGCAATGGGAGT+TGG + chr7.4:3682822-3682841 MS.gene78570:intron 35.0%
! AATTGCAAAGTGTTATGCCA+TGG - chr7.4:3683626-3683645 None:intergenic 35.0%
! CAAAAGGCATGATTCATGAT+AGG - chr7.4:3682044-3682063 None:intergenic 35.0%
! CAAAGATGCAACTCTTTTTC+AGG + chr7.4:3683053-3683072 MS.gene78570:CDS 35.0%
! TCACACACCAGAAATTTTGT+GGG - chr7.4:3682698-3682717 None:intergenic 35.0%
! TTCACACACCAGAAATTTTG+TGG - chr7.4:3682699-3682718 None:intergenic 35.0%
!! CAGGTATTGGTTACTTCATA+TGG + chr7.4:3681270-3681289 MS.gene78570:intron 35.0%
!! TGTGTGTGGAGAGTATTATA+AGG + chr7.4:3681434-3681453 MS.gene78570:intron 35.0%
!! TTCGTTTTAAGCGTCTGTTA+AGG + chr7.4:3682168-3682187 MS.gene78570:intron 35.0%
ACATTGTAACTAACCCCATC+TGG - chr7.4:3682021-3682040 None:intergenic 40.0%
ACGTATTGAATTTCACCAGG+AGG - chr7.4:3680825-3680844 None:intergenic 40.0%
AGAAAGTTGAAATCGCGAAG+TGG + chr7.4:3680784-3680803 MS.gene78570:CDS 40.0%
AGTTAGTTACATCTCCGCTT+CGG - chr7.4:3681043-3681062 None:intergenic 40.0%
ATAAGTGGATGGACATGTAC+AGG - chr7.4:3683141-3683160 None:intergenic 40.0%
ATCTGGTGGGAAAACTGAAA+AGG - chr7.4:3682004-3682023 None:intergenic 40.0%
ATGATGCATGCAAAAGACAC+AGG - chr7.4:3682496-3682515 None:intergenic 40.0%
ATTTATTGCAGGATCTTCGG+AGG + chr7.4:3683573-3683592 MS.gene78570:intron 40.0%
CAACAAACAGTGGACGTAAA+AGG + chr7.4:3682878-3682897 MS.gene78570:CDS 40.0%
CAAGCTCAAAATCAGAACCT+GGG - chr7.4:3682647-3682666 None:intergenic 40.0%
CCTTCCTGATTCTACTTTCA+AGG + chr7.4:3683476-3683495 MS.gene78570:CDS 40.0%
CCTTGAAAGTAGAATCAGGA+AGG - chr7.4:3683479-3683498 None:intergenic 40.0%
GCAACGTATTGAATTTCACC+AGG - chr7.4:3680828-3680847 None:intergenic 40.0%
GCTAATGACCATAACTTGAC+AGG + chr7.4:3683440-3683459 MS.gene78570:intron 40.0%
GGTACCTTGAAAGTAGAATC+AGG - chr7.4:3683483-3683502 None:intergenic 40.0%
GTAAATGGGAAGGATACTGA+GGG + chr7.4:3682621-3682640 MS.gene78570:CDS 40.0%
TAACACAAATCCCCTGACTT+AGG + chr7.4:3681234-3681253 MS.gene78570:intron 40.0%
TAAGTTCACGCAGATGATTG+AGG - chr7.4:3681914-3681933 None:intergenic 40.0%
TATGCCATGGAAATAAGGTG+CGG - chr7.4:3683613-3683632 None:intergenic 40.0%
TGGGAAAACTGAAAAGGCTT+TGG - chr7.4:3681998-3682017 None:intergenic 40.0%
TGTAAATGGGAAGGATACTG+AGG + chr7.4:3682620-3682639 MS.gene78570:CDS 40.0%
TGTCTACTGTGTAAATGGGA+AGG + chr7.4:3682611-3682630 MS.gene78570:CDS 40.0%
TTTCTTCTCAATTCTCCTCC+TGG + chr7.4:3680807-3680826 MS.gene78570:CDS 40.0%
TTTGTGCTAAGCTGTATCGT+TGG + chr7.4:3681614-3681633 MS.gene78570:intron 40.0%
! AAGCAAGGTACTCTGTTTCA+TGG - chr7.4:3683321-3683340 None:intergenic 40.0%
! ATTGCTACTTGAGCAGTTCT+AGG - chr7.4:3681324-3681343 None:intergenic 40.0%
! CTTTTACGTCCACTGTTTGT+TGG - chr7.4:3682880-3682899 None:intergenic 40.0%
! GAAAACTGAAAAGGCTTTGG+TGG - chr7.4:3681995-3682014 None:intergenic 40.0%
! TAGACAGAACAGACACCTTT+TGG - chr7.4:3682597-3682616 None:intergenic 40.0%
! TATGTTTCAGGTCTGTACAG+AGG + chr7.4:3681662-3681681 MS.gene78570:intron 40.0%
! TTTCAGTTTTCCCACCAGAT+GGG + chr7.4:3682004-3682023 MS.gene78570:intron 40.0%
! TTTTCAGTTTTCCCACCAGA+TGG + chr7.4:3682003-3682022 MS.gene78570:intron 40.0%
!! AAAGAAAAGGAGGGAGCATT+TGG + chr7.4:3682404-3682423 MS.gene78570:intron 40.0%
!! ATGAGCACCGACCTAAAAAT+AGG - chr7.4:3682989-3683008 None:intergenic 40.0%
!!! GGTGCTCATTATTTTGAGGA+AGG + chr7.4:3683000-3683019 MS.gene78570:CDS 40.0%
ATGCCATGGAAATAAGGTGC+GGG - chr7.4:3683612-3683631 None:intergenic 45.0%
CAAAGACGACCAACAAACAG+TGG + chr7.4:3682868-3682887 MS.gene78570:CDS 45.0%
CATCATCGCTTGCATAACAC+AGG + chr7.4:3682510-3682529 MS.gene78570:intron 45.0%
CATGTATGAGTCTCACTTCC+TGG - chr7.4:3682127-3682146 None:intergenic 45.0%
CGAACCATCATCGTTGAGAA+TGG - chr7.4:3680949-3680968 None:intergenic 45.0%
CTCACTTCCTGGCTACAATA+GGG - chr7.4:3682116-3682135 None:intergenic 45.0%
CTGTTGTGATTTCTGCTGCT+AGG + chr7.4:3682667-3682686 MS.gene78570:CDS 45.0%
GCAAGCTCAAAATCAGAACC+TGG - chr7.4:3682648-3682667 None:intergenic 45.0%
GGACGTAAAAGGGAAATTGC+AGG + chr7.4:3682889-3682908 MS.gene78570:CDS 45.0%
GGCATAGCCCACAAAATTTC+TGG + chr7.4:3682688-3682707 MS.gene78570:CDS 45.0%
TACTTCATATGGCGAGCTTG+AGG + chr7.4:3681281-3681300 MS.gene78570:CDS 45.0%
TCAGAACCTCAAGAGAAGCA+AGG - chr7.4:3683336-3683355 None:intergenic 45.0%
TCTCACTTCCTGGCTACAAT+AGG - chr7.4:3682117-3682136 None:intergenic 45.0%
TGTAACTAACCCCATCTGGT+GGG - chr7.4:3682017-3682036 None:intergenic 45.0%
TTGTAACTAACCCCATCTGG+TGG - chr7.4:3682018-3682037 None:intergenic 45.0%
! AACTGAAAAGGCTTTGGTGG+TGG - chr7.4:3681992-3682011 None:intergenic 45.0%
! AGAGTACCTTGCTTCTCTTG+AGG + chr7.4:3683327-3683346 MS.gene78570:CDS 45.0%
! TTCAGTTTTCCCACCAGATG+GGG + chr7.4:3682005-3682024 MS.gene78570:intron 45.0%
!! ATGGGAGTTGGTGCTCAATT+TGG + chr7.4:3682834-3682853 MS.gene78570:CDS 45.0%
!! GGTCGGTGCTCATTATTTTG+AGG + chr7.4:3682996-3683015 MS.gene78570:intron 45.0%
!!! TATTTAATTTTTCAATTAAT+TGG + chr7.4:3681115-3681134 MS.gene78570:intron 5.0%
AACCAATACCTGCATGCAGC+AGG - chr7.4:3681262-3681281 None:intergenic 50.0%
AACCTGCTGCATGCAGGTAT+TGG + chr7.4:3681257-3681276 MS.gene78570:intron 50.0%
ACGTGAACCCTATTGTAGCC+AGG + chr7.4:3682106-3682125 MS.gene78570:intron 50.0%
ATGCAGCAGGTTCCTAAGTC+AGG - chr7.4:3681249-3681268 None:intergenic 50.0%
ATGGCAAGCGCACAATCATC+AGG - chr7.4:3683280-3683299 None:intergenic 50.0%
CTTTCAATGCCTGACCGAAG+CGG + chr7.4:3681026-3681045 MS.gene78570:CDS 50.0%
GGAAGTTCTTCATCCAGTGC+AGG - chr7.4:3681693-3681712 None:intergenic 50.0%
TGCAGCAGGTTCCTAAGTCA+GGG - chr7.4:3681248-3681267 None:intergenic 50.0%
TGGCAAGCGCACAATCATCA+GGG - chr7.4:3683279-3683298 None:intergenic 50.0%
! TCACCCGCACCTTATTTCCA+TGG + chr7.4:3683606-3683625 MS.gene78570:CDS 50.0%
CTTAGGAACCTGCTGCATGC+AGG + chr7.4:3681251-3681270 MS.gene78570:intron 55.0%
GCAGCAGGTTCCTAAGTCAG+GGG - chr7.4:3681247-3681266 None:intergenic 55.0%
GGAAATAAGGTGCGGGTGAC+TGG - chr7.4:3683605-3683624 None:intergenic 55.0%
GGCAAGCGCACAATCATCAG+GGG - chr7.4:3683278-3683297 None:intergenic 55.0%
GTTACATCTCCGCTTCGGTC+AGG - chr7.4:3681038-3681057 None:intergenic 55.0%
TACAGAGGTGAGACCTGCAC+TGG + chr7.4:3681677-3681696 MS.gene78570:CDS 55.0%
GGGAAGGATACTGAGGGCCC+AGG + chr7.4:3682627-3682646 MS.gene78570:CDS 65.0%


Chromosome Type Strat End Strand Name
chr7.4 gene 3680744 3683691 3680744 ID=MS.gene78570
chr7.4 mRNA 3680744 3683691 3680744 ID=MS.gene78570.t1;Parent=MS.gene78570
chr7.4 exon 3680744 3680852 3680744 ID=MS.gene78570.t1.exon1;Parent=MS.gene78570.t1
chr7.4 CDS 3680744 3680852 3680744 ID=cds.MS.gene78570.t1;Parent=MS.gene78570.t1
chr7.4 exon 3680937 3681052 3680937 ID=MS.gene78570.t1.exon2;Parent=MS.gene78570.t1
chr7.4 CDS 3680937 3681052 3680937 ID=cds.MS.gene78570.t1;Parent=MS.gene78570.t1
chr7.4 exon 3681273 3681362 3681273 ID=MS.gene78570.t1.exon3;Parent=MS.gene78570.t1
chr7.4 CDS 3681273 3681362 3681273 ID=cds.MS.gene78570.t1;Parent=MS.gene78570.t1
chr7.4 exon 3681672 3681736 3681672 ID=MS.gene78570.t1.exon4;Parent=MS.gene78570.t1
chr7.4 CDS 3681672 3681736 3681672 ID=cds.MS.gene78570.t1;Parent=MS.gene78570.t1
chr7.4 exon 3682548 3682709 3682548 ID=MS.gene78570.t1.exon5;Parent=MS.gene78570.t1
chr7.4 CDS 3682548 3682709 3682548 ID=cds.MS.gene78570.t1;Parent=MS.gene78570.t1
chr7.4 exon 3682832 3682910 3682832 ID=MS.gene78570.t1.exon6;Parent=MS.gene78570.t1
chr7.4 CDS 3682832 3682910 3682832 ID=cds.MS.gene78570.t1;Parent=MS.gene78570.t1
chr7.4 exon 3682997 3683074 3682997 ID=MS.gene78570.t1.exon7;Parent=MS.gene78570.t1
chr7.4 CDS 3682997 3683074 3682997 ID=cds.MS.gene78570.t1;Parent=MS.gene78570.t1
chr7.4 exon 3683274 3683348 3683274 ID=MS.gene78570.t1.exon8;Parent=MS.gene78570.t1
chr7.4 CDS 3683274 3683348 3683274 ID=cds.MS.gene78570.t1;Parent=MS.gene78570.t1
chr7.4 exon 3683462 3683497 3683462 ID=MS.gene78570.t1.exon9;Parent=MS.gene78570.t1
chr7.4 CDS 3683462 3683497 3683462 ID=cds.MS.gene78570.t1;Parent=MS.gene78570.t1
chr7.4 exon 3683584 3683691 3683584 ID=MS.gene78570.t1.exon10;Parent=MS.gene78570.t1
chr7.4 CDS 3683584 3683691 3683584 ID=cds.MS.gene78570.t1;Parent=MS.gene78570.t1
Gene Sequence

>MS.gene78570

ATGGCAGAAGAAGAAGAAGAATCAGAGCTTAGCGAGAAGCAGAAAGTTGAAATCGCGAAGTGGTTTCTTCTCAATTCTCCTCCTGGTGAAATTCAATACGTTGCAAAAGGTTCTTTTACATTTTTCTTCCTCAGCATTTCATTTTCATTCCACTTTTACATTTCAATTTGTCTAATCGTTTCTTCTTCTTCAGATGTGAAATCCATTCTCAACGATGATGGTTCGTTTAACGAAGCTGCTTCCGAAGCATTTCCAATTTACAACAAATCACACTTCATTGTTCTTTCAATGCCTGACCGAAGCGGAGATGTAACTAACTTTTCATATTTTTTAATTGTTTTCTAATTCTTAGGGTTTCATATTTTTTTTACTATTTAATTTTTCAATTAATTGGATCGGTATCATGCTTTTTTTTTCTTTTTTTTTGACGTTGGATCGGTATCATGCTATATGAATGTATGATTGATAAATCAATGTGTATTTTCTTATGTAACACAAATCCCCTGACTTAGGAACCTGCTGCATGCAGGTATTGGTTACTTCATATGGCGAGCTTGAGGACAATGCATATCTTGATCCTAGAACTGCTCAAGTAGCAATAGTTGACCATGTTAAACAAGTAAGTGTGTGTTTGATTGAATTTATTTTACTTAAAAATGAGCTTTAGGTAAGATCATTTATGTTTGGATTTGTGTGTGGAGAGTATTATAAGGACCAATTTTCTGCTTATTGAAATTGGTTGTTGGAACTTGGAAAATGTGTTTTCTGTGAAAACATTGAAATTAGAAGGAAATATTTAGTTGGAGGTTAGGGTATAAAGCAAAACAGGAAAATTTGGTATTGCAGCCAAATATGACTTGTGTTGCTGTATTTGTGCTAAGCTGTATCGTTGGCATGTTTTCTTATGACAATTTGATATATGTTTCAGGTCTGTACAGAGGTGAGACCTGCACTGGATGAAGAACTTCCATCTGCATACATTGAAGAATTTCGGTAATCCTCTCCAATTTCCATGATTGAAATTTTTTATGTCTTACCATTTGATATTCCGTTAATCTTTTACTGAAGTGACCCGCACAATGATTTTTTTTGTTGAGGGGTAGAACATGCTGCTTCATTTTAGATTTTAATGAACTTATTTGCTTTTCAAATAAACTTTTTATTATTCCTCAATCATCTGCGTGAACTTAGACTTTTTAAATTGTTCAAAATAGATTGACCAAATAGATCTCTTCTTTAATACAGCCACCACCAAAGCCTTTTCAGTTTTCCCACCAGATGGGGTTAGTTACAATGTCCTATCATGAATCATGCCTTTTGACAAGTATAGATTTGTTCTTCTATGCAACTATTCTATTGAGAACGTGAACCCTATTGTAGCCAGGAAGTGAGACTCATACATGTGACAGATATTAATCTCTTTGTTCGTTTTAAGCGTCTGTTAAGGTTATGACACACAAATTAAGAATAACTTGTGTTTAGTTTTTAATTTATCCTTTCTCTCAAATATTTTACTTCTCCACAATTCTTTGTTGTATTAATTATTTTGGTTAAAATAAGGATATACTGTAATTGACAAATGAGTAAAACAGCAATTAATCTTGGACTTTTAAAATGACTGATAAATTGGAACATAAGCTTTTCTTTGAGCAACACTTTAAAAGAAAAGGAGGGAGCATTTGGCTGTATATATCTTGTCATTAAAAAACTATATTGACTGCTTGCATAAAGTAGCTTGAGTATCGCATGCCTGTGTCTTTTGCATGCATCATCGCTTGCATAACACAGGACTTGTTTATTGCAGATTCAGTCTGGATGCTGAAATACTTAAATATGTTGAAGAAGTTTATCCAAAAGGTGTCTGTTCTGTCTACTGTGTAAATGGGAAGGATACTGAGGGCCCAGGTTCTGATTTTGAGCTTGCTGTTGTGATTTCTGCTGCTAGGCATAGCCCACAAAATTTCTGGTGTGTGAATTTAGTTGAACAAAATTCGAACTGTTAGATGACTACTTTACTAGTTATAGTTACATAGTAAAAAAATGTATTAATAAAGTTAGTACTCCTTTTTCTTTGGCTTTTGTTTATAGCAATGGGAGTTGGTGCTCAATTTGGAATATTGATTTCAAAGACGACCAACAAACAGTGGACGTAAAAGGGAAATTGCAGGTAATTTTATGTAGATATTTGATGCATTGATTTGAATGATACTTTACAGCTCTACTTTAACATAATCATTTTTATCCTATTTTTAGGTCGGTGCTCATTATTTTGAGGAAGGAAATGTGCAGTTAGATGCAAAACATGAATGCAAAGATGCAACTCTTTTTCAGGTTACCATAAATCAGCATTCTTTGACTTATCAGTATATTATGTGTGAATGTATCAGCAAGTTACCTGTACATGTCCATCCACTTATTTTTGACAATCTAATGTATATGCATCCTTGTCTCTTTTTGTATATATATTCGAAAATGGTAAGATATAGGTATAGATTATTCATGTTTCATCTTTTGATTTATTTATGTTCAGGCCCCTGATGATTGTGCGCTTGCCATATCAAGCATTATTCGTCACCATGAAACAGAGTACCTTGCTTCTCTTGAGGTTCTGAATTCGATTTCTTGTAGCTAGGATCATTCTCTTTTTCTTCTTTTTTTTTCTTTCTTCTTTTCTTCTTCTTCTTCTTGTTAATGTTGCTAATGACCATAACTTGACAGGCTTCATATCTAAACCTTCCTGATTCTACTTTCAAGGTACCCTCTATTATATAATCCTATATTTATGTTAAGCCTATGATAGTCGTTGATTTTTGAAGCCTTCTGATTATAATTTATTGCAGGATCTTCGGAGGAAGCTTCCAGTCACCCGCACCTTATTTCCATGGCATAACACTTTGCAATTTAGCTTGTCAAGAGACATCTCAAAAGAACTTGGCATTGGAAAGTAA
Protein sequence

>MS.gene78570.t1

MAEEEEESELSEKQKVEIAKWFLLNSPPGEIQYVAKDVKSILNDDGSFNEAASEAFPIYNKSHFIVLSMPDRSGDVLVTSYGELEDNAYLDPRTAQVAIVDHVKQVCTEVRPALDEELPSAYIEEFRFSLDAEILKYVEEVYPKGVCSVYCVNGKDTEGPGSDFELAVVISAARHSPQNFCNGSWCSIWNIDFKDDQQTVDVKGKLQVGAHYFEEGNVQLDAKHECKDATLFQAPDDCALAISSIIRHHETEYLASLEASYLNLPDSTFKDLRRKLPVTRTLFPWHNTLQFSLSRDISKELGIGK