Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050907.t1 | XP_003626209.1 | 99.3 | 305 | 2 | 0 | 1 | 305 | 1 | 305 | 3.10E-174 | 620.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050907.t1 | O82631 | 70.8 | 308 | 87 | 1 | 1 | 305 | 1 | 308 | 6.2e-131 | 468.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050907.t1 | G7KXI8 | 99.3 | 305 | 2 | 0 | 1 | 305 | 1 | 305 | 2.2e-174 | 620.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050906 | MS.gene050907 | 0.815519 | 8.87E-52 | -1.69E-46 |
| MS.gene050907 | MS.gene050909 | 0.870265 | 1.66E-66 | -1.69E-46 |
| MS.gene050907 | MS.gene23117 | 0.815545 | 8.75E-52 | -1.69E-46 |
| MS.gene050907 | MS.gene23118 | 0.990408 | 1.71E-182 | -1.69E-46 |
| MS.gene050907 | MS.gene23120 | 0.858873 | 6.11E-63 | -1.69E-46 |
| MS.gene050907 | MS.gene24607 | -0.804041 | 2.61E-49 | -1.69E-46 |
| MS.gene050907 | MS.gene78570 | 0.904722 | 9.12E-80 | -1.69E-46 |
| MS.gene050907 | MS.gene84456 | -0.808192 | 3.49E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene050907 | MS.gene88855 | PPI |
| MS.gene050907 | MS.gene60755 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050907.t1 | MTR_7g112700 | 99.344 | 305 | 2 | 0 | 1 | 305 | 1 | 305 | 0.0 | 630 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050907.t1 | AT3G05520 | 71.525 | 295 | 84 | 0 | 11 | 305 | 41 | 335 | 2.06e-167 | 468 |
| MS.gene050907.t1 | AT3G05520 | 71.525 | 295 | 84 | 0 | 11 | 305 | 14 | 308 | 2.73e-167 | 467 |
| MS.gene050907.t1 | AT3G05520 | 71.525 | 295 | 84 | 0 | 11 | 305 | 14 | 308 | 1.89e-166 | 468 |
Find 60 sgRNAs with CRISPR-Local
Find 164 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTTCTGTCTACTGTGTAAA+TGG | 0.194304 | 7.1:+3334202 | MS.gene050907:CDS |
| ATGGGAGTTGGTGCTCAATT+TGG | 0.234047 | 7.1:+3334430 | MS.gene050907:CDS |
| AAGTGTGATTTGTTGTAAAT+TGG | 0.238558 | 7.1:-3332611 | None:intergenic |
| GGCATAGCCCACAAAATTTC+TGG | 0.238634 | 7.1:+3334284 | MS.gene050907:CDS |
| ATTGCTACTTGAGCAGTTCT+AGG | 0.251268 | 7.1:-3332896 | None:intergenic |
| CAACAAACAGTGGACGTAAA+AGG | 0.272987 | 7.1:+3334474 | MS.gene050907:CDS |
| CCTTCCTGATTCTACTTTCA+AGG | 0.294319 | 7.1:+3335071 | MS.gene050907:CDS |
| CTGCATACATTGAAGAATTT+CGG | 0.307423 | 7.1:+3333290 | MS.gene050907:CDS |
| TAGACAGAACAGACACCTTT+TGG | 0.313335 | 7.1:-3334190 | None:intergenic |
| GGAAATAAGGTGCGGGTGAC+TGG | 0.335841 | 7.1:-3335197 | None:intergenic |
| CAGGTATTGGTTACTTCATA+TGG | 0.389015 | 7.1:+3332845 | MS.gene050907:intron |
| TTTCTTCTCAATTCTCCTCC+TGG | 0.404211 | 7.1:+3332422 | MS.gene050907:CDS |
| ATGGCAAGCGCACAATCATC+AGG | 0.408097 | 7.1:-3334873 | None:intergenic |
| ATAATTTATTGCAGGATCTT+CGG | 0.419155 | 7.1:+3335165 | MS.gene050907:intron |
| TGTTTATTGCAGATTCAGTC+TGG | 0.425383 | 7.1:+3334132 | MS.gene050907:intron |
| GTGACGAATAATGCTTGATA+TGG | 0.433415 | 7.1:-3334892 | None:intergenic |
| AGTGTTATGCCATGGAAATA+AGG | 0.442011 | 7.1:-3335210 | None:intergenic |
| GTTGAAGAAGTTTATCCAAA+AGG | 0.446811 | 7.1:+3334175 | MS.gene050907:CDS |
| GGACGTAAAAGGGAAATTGC+AGG | 0.448824 | 7.1:+3334485 | MS.gene050907:CDS |
| GAAATTCAATACGTTGCAAA+AGG | 0.451513 | 7.1:+3332446 | MS.gene050907:CDS |
| CGAACCATCATCGTTGAGAA+TGG | 0.453171 | 7.1:-3332561 | None:intergenic |
| AACAAACAGTGGACGTAAAA+GGG | 0.455021 | 7.1:+3334475 | MS.gene050907:CDS |
| GTTACATCTCCGCTTCGGTC+AGG | 0.469021 | 7.1:-3332650 | None:intergenic |
| GGTACCTTGAAAGTAGAATC+AGG | 0.469238 | 7.1:-3335075 | None:intergenic |
| AAGCAAGGTACTCTGTTTCA+TGG | 0.469951 | 7.1:-3334914 | None:intergenic |
| GTTGTAAATTGGAAATGCTT+CGG | 0.474209 | 7.1:-3332600 | None:intergenic |
| CTGTTGTGATTTCTGCTGCT+AGG | 0.485098 | 7.1:+3334263 | MS.gene050907:CDS |
| TTGTTTATAGCAATGGGAGT+TGG | 0.503772 | 7.1:+3334418 | MS.gene050907:intron |
| ATCTCAAAAGAACTTGGCAT+TGG | 0.506508 | 7.1:+3335257 | MS.gene050907:CDS |
| GCAAGCTCAAAATCAGAACC+TGG | 0.521132 | 7.1:-3334241 | None:intergenic |
| AAATCCATTCTCAACGATGA+TGG | 0.529327 | 7.1:+3332557 | MS.gene050907:CDS |
| AGTTAGTTACATCTCCGCTT+CGG | 0.532930 | 7.1:-3332655 | None:intergenic |
| GTTCTGTCTACTGTGTAAAT+GGG | 0.536017 | 7.1:+3334203 | MS.gene050907:CDS |
| AGAGACATCTCAAAAGAACT+TGG | 0.537783 | 7.1:+3335251 | MS.gene050907:CDS |
| TACTTCATATGGCGAGCTTG+AGG | 0.551778 | 7.1:+3332856 | MS.gene050907:CDS |
| TCACCCGCACCTTATTTCCA+TGG | 0.565832 | 7.1:+3335201 | MS.gene050907:CDS |
| AATTCTTCAATGTATGCAGA+TGG | 0.567391 | 7.1:-3333286 | None:intergenic |
| AATTGCAAAGTGTTATGCCA+TGG | 0.570664 | 7.1:-3335218 | None:intergenic |
| TACAGAGGTGAGACCTGCAC+TGG | 0.572920 | 7.1:+3333252 | MS.gene050907:CDS |
| GGAAGTTCTTCATCCAGTGC+AGG | 0.573658 | 7.1:-3333265 | None:intergenic |
| GGGAAGGATACTGAGGGCCC+AGG | 0.574847 | 7.1:+3334223 | MS.gene050907:CDS |
| GCAACGTATTGAATTTCACC+AGG | 0.590563 | 7.1:-3332440 | None:intergenic |
| CAAGCTCAAAATCAGAACCT+GGG | 0.599793 | 7.1:-3334240 | None:intergenic |
| CCTTGAAAGTAGAATCAGGA+AGG | 0.604482 | 7.1:-3335071 | None:intergenic |
| TGTCTACTGTGTAAATGGGA+AGG | 0.606579 | 7.1:+3334207 | MS.gene050907:CDS |
| ACACACTTACTTGTTTAACA+TGG | 0.606781 | 7.1:-3332925 | None:intergenic |
| TGGCAAGCGCACAATCATCA+GGG | 0.608171 | 7.1:-3334872 | None:intergenic |
| CTTTCAATGCCTGACCGAAG+CGG | 0.608367 | 7.1:+3332641 | MS.gene050907:CDS |
| AGAGTACCTTGCTTCTCTTG+AGG | 0.615925 | 7.1:+3334923 | MS.gene050907:CDS |
| ATTTATTGCAGGATCTTCGG+AGG | 0.625709 | 7.1:+3335168 | MS.gene050907:intron |
| ATGCCATGGAAATAAGGTGC+GGG | 0.634497 | 7.1:-3335204 | None:intergenic |
| AGAAAGTTGAAATCGCGAAG+TGG | 0.636965 | 7.1:+3332399 | MS.gene050907:CDS |
| TCAGAACCTCAAGAGAAGCA+AGG | 0.655359 | 7.1:-3334929 | None:intergenic |
| TGTAAATGGGAAGGATACTG+AGG | 0.655670 | 7.1:+3334216 | MS.gene050907:CDS |
| GTAAATGGGAAGGATACTGA+GGG | 0.655998 | 7.1:+3334217 | MS.gene050907:CDS |
| CAAAGACGACCAACAAACAG+TGG | 0.675897 | 7.1:+3334464 | MS.gene050907:CDS |
| GGCAAGCGCACAATCATCAG+GGG | 0.679461 | 7.1:-3334871 | None:intergenic |
| TATGTTTCAGGTCTGTACAG+AGG | 0.688165 | 7.1:+3333237 | MS.gene050907:intron |
| ACGTATTGAATTTCACCAGG+AGG | 0.702006 | 7.1:-3332437 | None:intergenic |
| TATGCCATGGAAATAAGGTG+CGG | 0.767155 | 7.1:-3335205 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAATGATTATGTTAAAGT+AGG | - | chr7.1:3334560-3334579 | None:intergenic | 15.0% |
| !! | AAAATGATTATGTTAAAGTA+GGG | - | chr7.1:3334559-3334578 | None:intergenic | 15.0% |
| !! | AATATAGGATTATATAATAG+AGG | - | chr7.1:3335100-3335119 | None:intergenic | 15.0% |
| !! | ATATAGGATTATATAATAGA+GGG | - | chr7.1:3335099-3335118 | None:intergenic | 15.0% |
| !! | TTTGTATATATATTCGAAAA+TGG | + | chr7.1:3334793-3334812 | MS.gene050907:intron | 15.0% |
| !!! | AATTTTTCAATTAATTGGAT+CGG | + | chr7.1:3332735-3332754 | MS.gene050907:intron | 15.0% |
| !!! | ATCATTTTTATCCTATTTTT+AGG | + | chr7.1:3334571-3334590 | MS.gene050907:intron | 15.0% |
| !!! | TAATTCTTTTGGTTAAAATA+AGG | + | chr7.1:3333878-3333897 | MS.gene050907:intron | 15.0% |
| !!! | TAATTGTTTTCTAATTCTTA+GGG | + | chr7.1:3332690-3332709 | MS.gene050907:intron | 15.0% |
| !!! | TTAATTGTTTTCTAATTCTT+AGG | + | chr7.1:3332689-3332708 | MS.gene050907:intron | 15.0% |
| !!! | TTTTAAAATGACTGATAAAT+TGG | + | chr7.1:3333947-3333966 | MS.gene050907:intron | 15.0% |
| !! | AAGTAAAATATTTGAGAGAA+AGG | - | chr7.1:3333837-3333856 | None:intergenic | 20.0% |
| !! | AATTTCAATAAGCAGAAAAT+TGG | - | chr7.1:3333036-3333055 | None:intergenic | 20.0% |
| !! | ATTAATACAACAAAGAATTG+TGG | - | chr7.1:3333862-3333881 | None:intergenic | 20.0% |
| !! | ATTAGAAGGAAATATTTAGT+TGG | + | chr7.1:3333100-3333119 | MS.gene050907:intron | 20.0% |
| !! | ATTAGATTGTCAAAAATAAG+TGG | - | chr7.1:3334752-3334771 | None:intergenic | 20.0% |
| !! | TATATATACAAAAAGAGACA+AGG | - | chr7.1:3334785-3334804 | None:intergenic | 20.0% |
| !! | TATTAAAGAAGAGATCTATT+TGG | - | chr7.1:3333562-3333581 | None:intergenic | 20.0% |
| !! | TGCAATAAATTATAATCAGA+AGG | - | chr7.1:3335158-3335177 | None:intergenic | 20.0% |
| !! | TTCTGATTATAATTTATTGC+AGG | + | chr7.1:3335157-3335176 | MS.gene050907:intron | 20.0% |
| !! | TTTACTTAAAAATGAGCTTT+AGG | + | chr7.1:3332964-3332983 | MS.gene050907:intron | 20.0% |
| !!! | CTTTGTTGTATTAATTCTTT+TGG | + | chr7.1:3333867-3333886 | MS.gene050907:intron | 20.0% |
| !!! | CTTTTGATTTATTTATGTTC+AGG | + | chr7.1:3334848-3334867 | MS.gene050907:intron | 20.0% |
| !!! | TTTTTATCCTATTTTTAGGT+CGG | + | chr7.1:3334575-3334594 | MS.gene050907:intron | 20.0% |
| ! | AAAATCTCAATCATGGAAAT+TGG | - | chr7.1:3333325-3333344 | None:intergenic | 25.0% |
| ! | AAATATTTAGTTGGAGGTTA+GGG | + | chr7.1:3333109-3333128 | MS.gene050907:intron | 25.0% |
| ! | AAGATTAACGGAATATCAAA+TGG | - | chr7.1:3333358-3333377 | None:intergenic | 25.0% |
| ! | ACAAATCTATACTTGTCAAA+AGG | - | chr7.1:3333656-3333675 | None:intergenic | 25.0% |
| ! | AGTAAAACAGCAATTAATCT+TGG | + | chr7.1:3333922-3333941 | MS.gene050907:intron | 25.0% |
| ! | ATAATTTATTGCAGGATCTT+CGG | + | chr7.1:3335165-3335184 | MS.gene050907:intron | 25.0% |
| ! | ATTCGAAAATGGTAAGATAT+AGG | + | chr7.1:3334804-3334823 | MS.gene050907:intron | 25.0% |
| ! | CATAGGCTTAACATAAATAT+AGG | - | chr7.1:3335115-3335134 | None:intergenic | 25.0% |
| ! | GACAAATTGAAATGTAAAAG+TGG | - | chr7.1:3332511-3332530 | None:intergenic | 25.0% |
| ! | GACAATTTGATATATGTTTC+AGG | + | chr7.1:3333225-3333244 | MS.gene050907:intron | 25.0% |
| ! | GACATAAAAAATCTCAATCA+TGG | - | chr7.1:3333332-3333351 | None:intergenic | 25.0% |
| ! | GTGAAAACATTGAAATTAGA+AGG | + | chr7.1:3333086-3333105 | MS.gene050907:intron | 25.0% |
| ! | TAAACAAAAGCCAAAGAAAA+AGG | - | chr7.1:3334405-3334424 | None:intergenic | 25.0% |
| ! | TAAAGCAAAACAGGAAAATT+TGG | + | chr7.1:3333134-3333153 | MS.gene050907:intron | 25.0% |
| ! | TAGGTAAGATCATTTATGTT+TGG | + | chr7.1:3332983-3333002 | MS.gene050907:intron | 25.0% |
| ! | TCACTTCAGTAAAAGATTAA+CGG | - | chr7.1:3333370-3333389 | None:intergenic | 25.0% |
| !! | AACACTTTAAAAGAAAAGGA+GGG | + | chr7.1:3333991-3334010 | MS.gene050907:intron | 25.0% |
| !! | ACAATGATTTTTGATGTTGA+GGG | + | chr7.1:3333395-3333414 | MS.gene050907:intron | 25.0% |
| !!! | AAGTGTGATTTGTTGTAAAT+TGG | - | chr7.1:3332614-3332633 | None:intergenic | 25.0% |
| AACATCAAAAATCATTGTGC+GGG | - | chr7.1:3333393-3333412 | None:intergenic | 30.0% | |
| AATTCTTCAATGTATGCAGA+TGG | - | chr7.1:3333289-3333308 | None:intergenic | 30.0% | |
| ACACACTTACTTGTTTAACA+TGG | - | chr7.1:3332928-3332947 | None:intergenic | 30.0% | |
| AGAAGGAAATATTTAGTTGG+AGG | + | chr7.1:3333103-3333122 | MS.gene050907:intron | 30.0% | |
| CAAAAATCAACGACTATCAT+AGG | - | chr7.1:3335132-3335151 | None:intergenic | 30.0% | |
| CAACATCAAAAATCATTGTG+CGG | - | chr7.1:3333394-3333413 | None:intergenic | 30.0% | |
| CTGCATACATTGAAGAATTT+CGG | + | chr7.1:3333290-3333309 | MS.gene050907:CDS | 30.0% | |
| GAAATATTTAGTTGGAGGTT+AGG | + | chr7.1:3333108-3333127 | MS.gene050907:intron | 30.0% | |
| GAAATTCAATACGTTGCAAA+AGG | + | chr7.1:3332446-3332465 | MS.gene050907:CDS | 30.0% | |
| GATTGTCAAAAATAAGTGGA+TGG | - | chr7.1:3334748-3334767 | None:intergenic | 30.0% | |
| GTTGAAGAAGTTTATCCAAA+AGG | + | chr7.1:3334175-3334194 | MS.gene050907:CDS | 30.0% | |
| GTTGTAAATTGGAAATGCTT+CGG | - | chr7.1:3332603-3332622 | None:intergenic | 30.0% | |
| TGCTTATTGAAATTGCATGT+TGG | + | chr7.1:3333042-3333061 | MS.gene050907:intron | 30.0% | |
| TTTATGTTTGGATTTGTGTG+TGG | + | chr7.1:3332995-3333014 | MS.gene050907:intron | 30.0% | |
| ! | AGTTAGTACTCCTTTTTCTT+TGG | + | chr7.1:3334392-3334411 | MS.gene050907:intron | 30.0% |
| ! | CAACACTTTAAAAGAAAAGG+AGG | + | chr7.1:3333990-3334009 | MS.gene050907:intron | 30.0% |
| ! | CAATGATTTTTGATGTTGAG+GGG | + | chr7.1:3333396-3333415 | MS.gene050907:intron | 30.0% |
| ! | CACAATGATTTTTGATGTTG+AGG | + | chr7.1:3333394-3333413 | MS.gene050907:intron | 30.0% |
| ! | GAGCAACACTTTAAAAGAAA+AGG | + | chr7.1:3333987-3334006 | MS.gene050907:intron | 30.0% |
| !! | AGTCAAAGAATGCTGATTTA+TGG | - | chr7.1:3334678-3334697 | None:intergenic | 30.0% |
| !! | TGGCTTTTGTTTATAGCAAT+GGG | + | chr7.1:3334412-3334431 | MS.gene050907:intron | 30.0% |
| !! | TTCGTTTTAAGCGTCTTTTA+AGG | + | chr7.1:3333764-3333783 | MS.gene050907:intron | 30.0% |
| !! | TTGGCTTTTGTTTATAGCAA+TGG | + | chr7.1:3334411-3334430 | MS.gene050907:intron | 30.0% |
| AAATCCATTCTCAACGATGA+TGG | + | chr7.1:3332557-3332576 | MS.gene050907:CDS | 35.0% | |
| AACAAACAGTGGACGTAAAA+GGG | + | chr7.1:3334475-3334494 | MS.gene050907:CDS | 35.0% | |
| ACAGCAACACAAGTCATATT+TGG | - | chr7.1:3333168-3333187 | None:intergenic | 35.0% | |
| AGAGACATCTCAAAAGAACT+TGG | + | chr7.1:3335251-3335270 | MS.gene050907:CDS | 35.0% | |
| AGTGTTATGCCATGGAAATA+AGG | - | chr7.1:3335213-3335232 | None:intergenic | 35.0% | |
| ATATGAAGCCTGTCAAGTTA+TGG | - | chr7.1:3335046-3335065 | None:intergenic | 35.0% | |
| ATCTCAAAAGAACTTGGCAT+TGG | + | chr7.1:3335257-3335276 | MS.gene050907:CDS | 35.0% | |
| GAATTCGATTTCTTGTAGCT+AGG | + | chr7.1:3334950-3334969 | MS.gene050907:intron | 35.0% | |
| GGAATGAAAATGAAATGCTG+AGG | - | chr7.1:3332490-3332509 | None:intergenic | 35.0% | |
| GTGACGAATAATGCTTGATA+TGG | - | chr7.1:3334895-3334914 | None:intergenic | 35.0% | |
| GTTAGGGTATAAAGCAAAAC+AGG | + | chr7.1:3333125-3333144 | MS.gene050907:intron | 35.0% | |
| GTTCTGTCTACTGTGTAAAT+GGG | + | chr7.1:3334203-3334222 | MS.gene050907:CDS | 35.0% | |
| TGAAATTGCATGTTGGAACT+TGG | + | chr7.1:3333049-3333068 | MS.gene050907:intron | 35.0% | |
| TGTTCTGTCTACTGTGTAAA+TGG | + | chr7.1:3334202-3334221 | MS.gene050907:CDS | 35.0% | |
| TGTTTATTGCAGATTCAGTC+TGG | + | chr7.1:3334132-3334151 | MS.gene050907:intron | 35.0% | |
| TTGTTTATAGCAATGGGAGT+TGG | + | chr7.1:3334418-3334437 | MS.gene050907:intron | 35.0% | |
| ! | AATTGCAAAGTGTTATGCCA+TGG | - | chr7.1:3335221-3335240 | None:intergenic | 35.0% |
| ! | CAAAAGGCATGATTCATGAT+AGG | - | chr7.1:3333640-3333659 | None:intergenic | 35.0% |
| ! | CAAAGATGCAACTCTTTTTC+AGG | + | chr7.1:3334649-3334668 | MS.gene050907:CDS | 35.0% |
| ! | TCACACACCAGAAATTTTGT+GGG | - | chr7.1:3334294-3334313 | None:intergenic | 35.0% |
| ! | TTCACACACCAGAAATTTTG+TGG | - | chr7.1:3334295-3334314 | None:intergenic | 35.0% |
| !! | CAGGTATTGGTTACTTCATA+TGG | + | chr7.1:3332845-3332864 | MS.gene050907:intron | 35.0% |
| !! | TGTGTGTGGAGAGTATTATA+AGG | + | chr7.1:3333009-3333028 | MS.gene050907:intron | 35.0% |
| ACATTGTAACTAACCCCATC+TGG | - | chr7.1:3333617-3333636 | None:intergenic | 40.0% | |
| ACGTATTGAATTTCACCAGG+AGG | - | chr7.1:3332440-3332459 | None:intergenic | 40.0% | |
| AGAAAGTTGAAATCGCGAAG+TGG | + | chr7.1:3332399-3332418 | MS.gene050907:CDS | 40.0% | |
| AGTTAGTTACATCTCCGCTT+CGG | - | chr7.1:3332658-3332677 | None:intergenic | 40.0% | |
| ATAAGTGGATGGACATGTAC+AGG | - | chr7.1:3334737-3334756 | None:intergenic | 40.0% | |
| ATCTGGTGGGAAAACTGAAA+AGG | - | chr7.1:3333600-3333619 | None:intergenic | 40.0% | |
| ATGATGCATGCAAAAGACAC+AGG | - | chr7.1:3334092-3334111 | None:intergenic | 40.0% | |
| ATTTATTGCAGGATCTTCGG+AGG | + | chr7.1:3335168-3335187 | MS.gene050907:intron | 40.0% | |
| CAACAAACAGTGGACGTAAA+AGG | + | chr7.1:3334474-3334493 | MS.gene050907:CDS | 40.0% | |
| CAAGCTCAAAATCAGAACCT+GGG | - | chr7.1:3334243-3334262 | None:intergenic | 40.0% | |
| CATATATGAGTCTCACTTCC+TGG | - | chr7.1:3333723-3333742 | None:intergenic | 40.0% | |
| CCTTCCTGATTCTACTTTCA+AGG | + | chr7.1:3335071-3335090 | MS.gene050907:CDS | 40.0% | |
| CCTTGAAAGTAGAATCAGGA+AGG | - | chr7.1:3335074-3335093 | None:intergenic | 40.0% | |
| CTCAATCATGGAAATTGGAG+AGG | - | chr7.1:3333320-3333339 | None:intergenic | 40.0% | |
| GCAACGTATTGAATTTCACC+AGG | - | chr7.1:3332443-3332462 | None:intergenic | 40.0% | |
| GCTAATGACCATAACTTGAC+AGG | + | chr7.1:3335035-3335054 | MS.gene050907:intron | 40.0% | |
| GGTACCTTGAAAGTAGAATC+AGG | - | chr7.1:3335078-3335097 | None:intergenic | 40.0% | |
| GTAAATGGGAAGGATACTGA+GGG | + | chr7.1:3334217-3334236 | MS.gene050907:CDS | 40.0% | |
| TAACACAAATCCCCTGACTT+GGG | + | chr7.1:3332809-3332828 | MS.gene050907:intron | 40.0% | |
| TAAGTTCACGCAGATGATTG+AGG | - | chr7.1:3333510-3333529 | None:intergenic | 40.0% | |
| TATGCCATGGAAATAAGGTG+CGG | - | chr7.1:3335208-3335227 | None:intergenic | 40.0% | |
| TGGGAAAACTGAAAAGGCTT+TGG | - | chr7.1:3333594-3333613 | None:intergenic | 40.0% | |
| TGTAAATGGGAAGGATACTG+AGG | + | chr7.1:3334216-3334235 | MS.gene050907:CDS | 40.0% | |
| TGTCTACTGTGTAAATGGGA+AGG | + | chr7.1:3334207-3334226 | MS.gene050907:CDS | 40.0% | |
| TTTCTTCTCAATTCTCCTCC+TGG | + | chr7.1:3332422-3332441 | MS.gene050907:CDS | 40.0% | |
| TTTGTGCTAAGCTGTATCGT+TGG | + | chr7.1:3333189-3333208 | MS.gene050907:intron | 40.0% | |
| ! | AAGCAAGGTACTCTGTTTCA+TGG | - | chr7.1:3334917-3334936 | None:intergenic | 40.0% |
| ! | ATTGCTACTTGAGCAGTTCT+AGG | - | chr7.1:3332899-3332918 | None:intergenic | 40.0% |
| ! | CTTTTACGTCCACTGTTTGT+TGG | - | chr7.1:3334476-3334495 | None:intergenic | 40.0% |
| ! | GAAAACTGAAAAGGCTTTGG+TGG | - | chr7.1:3333591-3333610 | None:intergenic | 40.0% |
| ! | TAGACAGAACAGACACCTTT+TGG | - | chr7.1:3334193-3334212 | None:intergenic | 40.0% |
| ! | TATGTTTCAGGTCTGTACAG+AGG | + | chr7.1:3333237-3333256 | MS.gene050907:intron | 40.0% |
| ! | TTTCAGTTTTCCCACCAGAT+GGG | + | chr7.1:3333600-3333619 | MS.gene050907:intron | 40.0% |
| ! | TTTTCAGTTTTCCCACCAGA+TGG | + | chr7.1:3333599-3333618 | MS.gene050907:intron | 40.0% |
| !! | AAAGAAAAGGAGGGAGCATT+TGG | + | chr7.1:3334000-3334019 | MS.gene050907:intron | 40.0% |
| !! | ATGAGCACCGACCTAAAAAT+AGG | - | chr7.1:3334585-3334604 | None:intergenic | 40.0% |
| !!! | GGTGCTCATTATTTTGAGGA+AGG | + | chr7.1:3334596-3334615 | MS.gene050907:CDS | 40.0% |
| ATGCCATGGAAATAAGGTGC+GGG | - | chr7.1:3335207-3335226 | None:intergenic | 45.0% | |
| CAAAGACGACCAACAAACAG+TGG | + | chr7.1:3334464-3334483 | MS.gene050907:CDS | 45.0% | |
| CATCATCGCTTGCATAACAC+AGG | + | chr7.1:3334106-3334125 | MS.gene050907:intron | 45.0% | |
| CGAACCATCATCGTTGAGAA+TGG | - | chr7.1:3332564-3332583 | None:intergenic | 45.0% | |
| CTCACTTCCTGGCTACAATA+GGG | - | chr7.1:3333712-3333731 | None:intergenic | 45.0% | |
| CTGTTGTGATTTCTGCTGCT+AGG | + | chr7.1:3334263-3334282 | MS.gene050907:CDS | 45.0% | |
| GCAAGCTCAAAATCAGAACC+TGG | - | chr7.1:3334244-3334263 | None:intergenic | 45.0% | |
| GGACGTAAAAGGGAAATTGC+AGG | + | chr7.1:3334485-3334504 | MS.gene050907:CDS | 45.0% | |
| GGCATAGCCCACAAAATTTC+TGG | + | chr7.1:3334284-3334303 | MS.gene050907:CDS | 45.0% | |
| GTAACACAAATCCCCTGACT+TGG | + | chr7.1:3332808-3332827 | MS.gene050907:intron | 45.0% | |
| TACTTCATATGGCGAGCTTG+AGG | + | chr7.1:3332856-3332875 | MS.gene050907:CDS | 45.0% | |
| TCAGAACCTCAAGAGAAGCA+AGG | - | chr7.1:3334932-3334951 | None:intergenic | 45.0% | |
| TCTCACTTCCTGGCTACAAT+AGG | - | chr7.1:3333713-3333732 | None:intergenic | 45.0% | |
| TGTAACTAACCCCATCTGGT+GGG | - | chr7.1:3333613-3333632 | None:intergenic | 45.0% | |
| TTGTAACTAACCCCATCTGG+TGG | - | chr7.1:3333614-3333633 | None:intergenic | 45.0% | |
| ! | AACTGAAAAGGCTTTGGTGG+TGG | - | chr7.1:3333588-3333607 | None:intergenic | 45.0% |
| ! | AGAGTACCTTGCTTCTCTTG+AGG | + | chr7.1:3334923-3334942 | MS.gene050907:CDS | 45.0% |
| ! | TTCAGTTTTCCCACCAGATG+GGG | + | chr7.1:3333601-3333620 | MS.gene050907:intron | 45.0% |
| !! | ATGGGAGTTGGTGCTCAATT+TGG | + | chr7.1:3334430-3334449 | MS.gene050907:CDS | 45.0% |
| !! | GGTCGGTGCTCATTATTTTG+AGG | + | chr7.1:3334592-3334611 | MS.gene050907:intron | 45.0% |
| !!! | TATTTAATTTTTCAATTAAT+TGG | + | chr7.1:3332730-3332749 | MS.gene050907:intron | 5.0% |
| AACCAATACCTGCATGCAGC+AGG | - | chr7.1:3332837-3332856 | None:intergenic | 50.0% | |
| AACCTGCTGCATGCAGGTAT+TGG | + | chr7.1:3332832-3332851 | MS.gene050907:intron | 50.0% | |
| ACGTGAACCCTATTGTAGCC+AGG | + | chr7.1:3333702-3333721 | MS.gene050907:intron | 50.0% | |
| ATGGCAAGCGCACAATCATC+AGG | - | chr7.1:3334876-3334895 | None:intergenic | 50.0% | |
| CTTTCAATGCCTGACCGAAG+CGG | + | chr7.1:3332641-3332660 | MS.gene050907:CDS | 50.0% | |
| GGAAGTTCTTCATCCAGTGC+AGG | - | chr7.1:3333268-3333287 | None:intergenic | 50.0% | |
| TGGCAAGCGCACAATCATCA+GGG | - | chr7.1:3334875-3334894 | None:intergenic | 50.0% | |
| ! | TCACCCGCACCTTATTTCCA+TGG | + | chr7.1:3335201-3335220 | MS.gene050907:CDS | 50.0% |
| ATGCAGCAGGTTCCCAAGTC+AGG | - | chr7.1:3332824-3332843 | None:intergenic | 55.0% | |
| GGAAATAAGGTGCGGGTGAC+TGG | - | chr7.1:3335200-3335219 | None:intergenic | 55.0% | |
| GGCAAGCGCACAATCATCAG+GGG | - | chr7.1:3334874-3334893 | None:intergenic | 55.0% | |
| GTTACATCTCCGCTTCGGTC+AGG | - | chr7.1:3332653-3332672 | None:intergenic | 55.0% | |
| TACAGAGGTGAGACCTGCAC+TGG | + | chr7.1:3333252-3333271 | MS.gene050907:CDS | 55.0% | |
| TGCAGCAGGTTCCCAAGTCA+GGG | - | chr7.1:3332823-3332842 | None:intergenic | 55.0% | |
| CTTGGGAACCTGCTGCATGC+AGG | + | chr7.1:3332826-3332845 | MS.gene050907:intron | 60.0% | |
| GCAGCAGGTTCCCAAGTCAG+GGG | - | chr7.1:3332822-3332841 | None:intergenic | 60.0% | |
| GGGAAGGATACTGAGGGCCC+AGG | + | chr7.1:3334223-3334242 | MS.gene050907:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.1 | gene | 3332359 | 3335286 | 3332359 | ID=MS.gene050907 |
| chr7.1 | mRNA | 3332359 | 3335286 | 3332359 | ID=MS.gene050907.t1;Parent=MS.gene050907 |
| chr7.1 | exon | 3332359 | 3332467 | 3332359 | ID=MS.gene050907.t1.exon1;Parent=MS.gene050907.t1 |
| chr7.1 | CDS | 3332359 | 3332467 | 3332359 | ID=cds.MS.gene050907.t1;Parent=MS.gene050907.t1 |
| chr7.1 | exon | 3332552 | 3332667 | 3332552 | ID=MS.gene050907.t1.exon2;Parent=MS.gene050907.t1 |
| chr7.1 | CDS | 3332552 | 3332667 | 3332552 | ID=cds.MS.gene050907.t1;Parent=MS.gene050907.t1 |
| chr7.1 | exon | 3332848 | 3332937 | 3332848 | ID=MS.gene050907.t1.exon3;Parent=MS.gene050907.t1 |
| chr7.1 | CDS | 3332848 | 3332937 | 3332848 | ID=cds.MS.gene050907.t1;Parent=MS.gene050907.t1 |
| chr7.1 | exon | 3333247 | 3333311 | 3333247 | ID=MS.gene050907.t1.exon4;Parent=MS.gene050907.t1 |
| chr7.1 | CDS | 3333247 | 3333311 | 3333247 | ID=cds.MS.gene050907.t1;Parent=MS.gene050907.t1 |
| chr7.1 | exon | 3334144 | 3334305 | 3334144 | ID=MS.gene050907.t1.exon5;Parent=MS.gene050907.t1 |
| chr7.1 | CDS | 3334144 | 3334305 | 3334144 | ID=cds.MS.gene050907.t1;Parent=MS.gene050907.t1 |
| chr7.1 | exon | 3334428 | 3334506 | 3334428 | ID=MS.gene050907.t1.exon6;Parent=MS.gene050907.t1 |
| chr7.1 | CDS | 3334428 | 3334506 | 3334428 | ID=cds.MS.gene050907.t1;Parent=MS.gene050907.t1 |
| chr7.1 | exon | 3334593 | 3334670 | 3334593 | ID=MS.gene050907.t1.exon7;Parent=MS.gene050907.t1 |
| chr7.1 | CDS | 3334593 | 3334670 | 3334593 | ID=cds.MS.gene050907.t1;Parent=MS.gene050907.t1 |
| chr7.1 | exon | 3334870 | 3334944 | 3334870 | ID=MS.gene050907.t1.exon8;Parent=MS.gene050907.t1 |
| chr7.1 | CDS | 3334870 | 3334944 | 3334870 | ID=cds.MS.gene050907.t1;Parent=MS.gene050907.t1 |
| chr7.1 | exon | 3335057 | 3335092 | 3335057 | ID=MS.gene050907.t1.exon9;Parent=MS.gene050907.t1 |
| chr7.1 | CDS | 3335057 | 3335092 | 3335057 | ID=cds.MS.gene050907.t1;Parent=MS.gene050907.t1 |
| chr7.1 | exon | 3335179 | 3335286 | 3335179 | ID=MS.gene050907.t1.exon10;Parent=MS.gene050907.t1 |
| chr7.1 | CDS | 3335179 | 3335286 | 3335179 | ID=cds.MS.gene050907.t1;Parent=MS.gene050907.t1 |
| Gene Sequence |
| Protein sequence |
