Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78595.t1 | XP_003626280.1 | 91.8 | 282 | 19 | 1 | 1 | 278 | 213 | 494 | 8.80E-136 | 493 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78595.t1 | Q9FZ33 | 53.0 | 266 | 114 | 3 | 7 | 272 | 213 | 467 | 2.0e-67 | 257.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78595.t1 | G7KYN0 | 91.8 | 282 | 19 | 1 | 1 | 278 | 213 | 494 | 6.4e-136 | 493.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049418 | MS.gene78595 | 0.830781 | 2.42E-55 | -1.69E-46 |
| MS.gene050630 | MS.gene78595 | 0.830204 | 3.35E-55 | -1.69E-46 |
| MS.gene053500 | MS.gene78595 | 0.800567 | 1.36E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78595.t1 | MTR_7g113420 | 93.262 | 282 | 15 | 1 | 1 | 278 | 213 | 494 | 0.0 | 508 |
| MS.gene78595.t1 | MTR_7g113420 | 94.949 | 198 | 10 | 0 | 1 | 198 | 213 | 410 | 7.68e-122 | 354 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78595.t1 | AT1G54990 | 56.929 | 267 | 104 | 3 | 7 | 273 | 213 | 468 | 4.27e-90 | 275 |
Find 76 sgRNAs with CRISPR-Local
Find 147 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCAAAGTTTGTTACTCATTC+TGG | 0.188700 | 7.4:+3387821 | MS.gene78595:CDS |
| GGTTTCTGAGAATTTAAATT+TGG | 0.212168 | 7.4:+3387424 | MS.gene78595:CDS |
| GTGAATAAACCTATTGATTT+AGG | 0.213075 | 7.4:+3387296 | MS.gene78595:CDS |
| TGAAGAGATTGGAAAAGTTT+TGG | 0.215909 | 7.4:+3387322 | MS.gene78595:CDS |
| CTTTAGGGTTTACTGCAAAT+TGG | 0.234894 | 7.4:+3387402 | MS.gene78595:CDS |
| CATCCATGAAGCTGGTTATA+TGG | 0.272529 | 7.4:+3389324 | MS.gene78595:CDS |
| GCCCGTGCCACCTTCAAATT+CGG | 0.300130 | 7.4:+3387472 | MS.gene78595:CDS |
| AGGATTAGCTCCTGTTCATT+TGG | 0.321069 | 7.4:+3387364 | MS.gene78595:CDS |
| GGGTTGCTGGTGCTCTTCCT+TGG | 0.322738 | 7.4:+3387798 | MS.gene78595:CDS |
| GGAGAGGTTATTGCTACATT+AGG | 0.331260 | 7.4:+3387344 | MS.gene78595:CDS |
| CGCGAAGGGAATCGGGTTGC+TGG | 0.337738 | 7.4:+3387785 | MS.gene78595:CDS |
| TTCTGTATGTGGTCTGGGAT+AGG | 0.340544 | 7.4:-3389229 | None:intergenic |
| GGAACATCCAAAACCCAAAT+AGG | 0.346484 | 7.4:-3387503 | None:intergenic |
| TCTGTATGTGGTCTGGGATA+GGG | 0.353068 | 7.4:-3389228 | None:intergenic |
| CATCCATATAACCAGCTTCA+TGG | 0.356193 | 7.4:-3389327 | None:intergenic |
| AACATCTTCTGTATGTGGTC+TGG | 0.357775 | 7.4:-3389235 | None:intergenic |
| CATAGGGTGCTGTTGAAGTC+TGG | 0.362685 | 7.4:+3387623 | MS.gene78595:CDS |
| TCTTCAGGACCTAAATCAAT+AGG | 0.364136 | 7.4:-3387305 | None:intergenic |
| GGTTGCTGGTGCTCTTCCTT+GGG | 0.365766 | 7.4:+3387799 | MS.gene78595:CDS |
| GATCACTTTCACCAATCATT+TGG | 0.367733 | 7.4:-3389370 | None:intergenic |
| AATGGAGTCGCGAAGGGAAT+CGG | 0.375141 | 7.4:+3387777 | MS.gene78595:CDS |
| TAGCTTTGATTTAGCTGAAT+GGG | 0.376044 | 7.4:+3387691 | MS.gene78595:CDS |
| TACTCATTCTGGAGGCCGTT+GGG | 0.379063 | 7.4:+3387832 | MS.gene78595:CDS |
| TTTAGGGTTTACTGCAAATT+GGG | 0.387005 | 7.4:+3387403 | MS.gene78595:CDS |
| AGGAAAGCGGTTGTGGCTAT+TGG | 0.398736 | 7.4:+3387653 | MS.gene78595:CDS |
| CTGTATGTGGTCTGGGATAG+GGG | 0.404408 | 7.4:-3389227 | None:intergenic |
| TTCTGGAGGCCGTTGGGCTC+AGG | 0.412514 | 7.4:+3387838 | MS.gene78595:CDS |
| TTCTAAGAGAATTGGTGGTT+TGG | 0.414206 | 7.4:+3387589 | MS.gene78595:CDS |
| CCCGTGCCACCTTCAAATTC+GGG | 0.415386 | 7.4:+3387473 | MS.gene78595:CDS |
| ATGGAGTCGCGAAGGGAATC+GGG | 0.426920 | 7.4:+3387778 | MS.gene78595:CDS |
| ACATCTTCTGTATGTGGTCT+GGG | 0.430738 | 7.4:-3389234 | None:intergenic |
| GATTTAGGTCCTGAAGAGAT+TGG | 0.432271 | 7.4:+3387311 | MS.gene78595:CDS |
| TACTGTTCTAAGAGAATTGG+TGG | 0.443206 | 7.4:+3387584 | MS.gene78595:CDS |
| TTACTCATTCTGGAGGCCGT+TGG | 0.460405 | 7.4:+3387831 | MS.gene78595:CDS |
| TCATGCAAAACCAAATGAAC+AGG | 0.463756 | 7.4:-3387374 | None:intergenic |
| GCTGGTTATATGGATGCATA+TGG | 0.467345 | 7.4:+3389334 | MS.gene78595:CDS |
| ATAGGGTGCTGTTGAAGTCT+GGG | 0.467959 | 7.4:+3387624 | MS.gene78595:CDS |
| CTAGCTTTGATTTAGCTGAA+TGG | 0.469276 | 7.4:+3387690 | MS.gene78595:CDS |
| GCTGAATGGGGTGGTTCTGA+TGG | 0.473143 | 7.4:+3387704 | MS.gene78595:CDS |
| GGATGGAAGGAAAGCGGTTG+TGG | 0.475697 | 7.4:+3387646 | MS.gene78595:CDS |
| ATATGCCAATGCAACTGATC+TGG | 0.483350 | 7.4:+3387735 | MS.gene78595:CDS |
| CCCGAATTTGAAGGTGGCAC+GGG | 0.505835 | 7.4:-3387473 | None:intergenic |
| CATCAAACATCTTCTGTATG+TGG | 0.517131 | 7.4:-3389240 | None:intergenic |
| GGAAAAGCACCCGAATTTGA+AGG | 0.517603 | 7.4:-3387482 | None:intergenic |
| TGTATGTGGTCTGGGATAGG+GGG | 0.520587 | 7.4:-3389226 | None:intergenic |
| GATGCATATGGGCTTGGTCA+TGG | 0.526973 | 7.4:+3389346 | MS.gene78595:CDS |
| AACTGATCTGGTCTAGTGAT+TGG | 0.528070 | 7.4:+3387747 | MS.gene78595:CDS |
| CTAGTGATTGGTCTGTAGAA+TGG | 0.529699 | 7.4:+3387759 | MS.gene78595:CDS |
| TTGGTCATGGACCAAATGAT+TGG | 0.531729 | 7.4:+3389359 | MS.gene78595:CDS |
| TTTGGATGCTGATGCACATA+GGG | 0.533671 | 7.4:+3387607 | MS.gene78595:CDS |
| TATATGGATGCATATGGGCT+TGG | 0.541175 | 7.4:+3389340 | MS.gene78595:CDS |
| AGCTTTGATTTAGCTGAATG+GGG | 0.545831 | 7.4:+3387692 | MS.gene78595:CDS |
| GATGAAGCTAAAAGTGATGA+TGG | 0.551240 | 7.4:+3389259 | MS.gene78595:CDS |
| CTAGACCAGATCAGTTGCAT+TGG | 0.554156 | 7.4:-3387740 | None:intergenic |
| GTTTGGATGCTGATGCACAT+AGG | 0.560246 | 7.4:+3387606 | MS.gene78595:CDS |
| GAAGCTCACATCCATGAAGC+TGG | 0.565704 | 7.4:+3389316 | MS.gene78595:CDS |
| ACCCGAATTTGAAGGTGGCA+CGG | 0.569982 | 7.4:-3387474 | None:intergenic |
| AAAACTACCTCTCTAATCAA+AGG | 0.579564 | 7.4:-3387524 | None:intergenic |
| GGATGTTCCTTTGATTAGAG+AGG | 0.589634 | 7.4:+3387517 | MS.gene78595:CDS |
| CTGTAGAATGGAGTCGCGAA+GGG | 0.589757 | 7.4:+3387771 | MS.gene78595:CDS |
| GTGCTGTTGAAGTCTGGGGA+TGG | 0.594356 | 7.4:+3387629 | MS.gene78595:CDS |
| AGTGATGATGGTCATGATCA+TGG | 0.595237 | 7.4:+3389271 | MS.gene78595:CDS |
| TTTGATTTAGCTGAATGGGG+TGG | 0.595613 | 7.4:+3387695 | MS.gene78595:CDS |
| CTGGTTATATGGATGCATAT+GGG | 0.596389 | 7.4:+3389335 | MS.gene78595:CDS |
| AAGTTTGTTACTCATTCTGG+AGG | 0.604446 | 7.4:+3387824 | MS.gene78595:CDS |
| TTCTAGCTAGAATGTCAAAG+AGG | 0.614198 | 7.4:+3387270 | MS.gene78595:CDS |
| TCTGTAGAATGGAGTCGCGA+AGG | 0.618026 | 7.4:+3387770 | MS.gene78595:CDS |
| TGTTGAAGTCTGGGGATGGA+AGG | 0.618688 | 7.4:+3387633 | MS.gene78595:CDS |
| GGTCACGGACATGATCGCCT+TGG | 0.628231 | 7.4:+3389292 | MS.gene78595:CDS |
| GTCTGGGGATGGAAGGAAAG+CGG | 0.630612 | 7.4:+3387640 | MS.gene78595:CDS |
| TGAGTAACAAACTTTGCCCA+AGG | 0.635006 | 7.4:-3387815 | None:intergenic |
| TTGTGCACACCTGAGCCCAA+CGG | 0.637219 | 7.4:-3387847 | None:intergenic |
| AAAGCACCCGAATTTGAAGG+TGG | 0.688232 | 7.4:-3387479 | None:intergenic |
| TAGGGTGCTGTTGAAGTCTG+GGG | 0.693836 | 7.4:+3387625 | MS.gene78595:CDS |
| CATGGATGTGAGCTTCACCA+AGG | 0.699492 | 7.4:-3389309 | None:intergenic |
| GATGGTCATGATCATGGTCA+CGG | 0.699879 | 7.4:+3389277 | MS.gene78595:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AACAAATGTGTTTCTTTAAT+GGG | - | chr7.4:3388271-3388290 | None:intergenic | 20.0% |
| !! | AATATTAGATACAGAATGAA+AGG | + | chr7.4:3388772-3388791 | MS.gene78595:intron | 20.0% |
| !! | ATATACACAAATAAACGATT+CGG | - | chr7.4:3389061-3389080 | None:intergenic | 20.0% |
| !! | ATGTTCAAATATGATATTTG+AGG | + | chr7.4:3388893-3388912 | MS.gene78595:intron | 20.0% |
| !! | TTATCAATGAATCAACTAAT+GGG | - | chr7.4:3388828-3388847 | None:intergenic | 20.0% |
| !! | TTGATTCATTGATAAATTCA+AGG | + | chr7.4:3388833-3388852 | MS.gene78595:intron | 20.0% |
| !! | TTTATCAATGAATCAACTAA+TGG | - | chr7.4:3388829-3388848 | None:intergenic | 20.0% |
| !!! | AAAGTTTTAGCAATAGAAAA+GGG | - | chr7.4:3388399-3388418 | None:intergenic | 20.0% |
| !!! | ATTAGTTTTCTCTTATACTT+TGG | + | chr7.4:3388526-3388545 | MS.gene78595:intron | 20.0% |
| !!! | TTAGTTTTCTCTTATACTTT+GGG | + | chr7.4:3388527-3388546 | MS.gene78595:intron | 20.0% |
| !!! | TTTTTTTTTCATATCCCATT+CGG | + | chr7.4:3389012-3389031 | MS.gene78595:intron | 20.0% |
| ! | AAGTCAACATTGATATTTGA+TGG | - | chr7.4:3388231-3388250 | None:intergenic | 25.0% |
| ! | AATTGGATTGAAATGAATAC+TGG | + | chr7.4:3387941-3387960 | MS.gene78595:intron | 25.0% |
| ! | CAACAAATGTGTTTCTTTAA+TGG | - | chr7.4:3388272-3388291 | None:intergenic | 25.0% |
| ! | GATATGAAAAAAAAATCAGG+AGG | - | chr7.4:3389007-3389026 | None:intergenic | 25.0% |
| ! | GTTGTGTAGAATTGTTTAAT+TGG | + | chr7.4:3387924-3387943 | MS.gene78595:intron | 25.0% |
| ! | TAGGAAAGTCTTTATAGAAT+TGG | + | chr7.4:3388627-3388646 | MS.gene78595:intron | 25.0% |
| ! | TGGGATATGAAAAAAAAATC+AGG | - | chr7.4:3389010-3389029 | None:intergenic | 25.0% |
| !! | GGTTTCTGAGAATTTAAATT+TGG | + | chr7.4:3387424-3387443 | MS.gene78595:CDS | 25.0% |
| !! | GTTTTCATGGAATTTGTAAA+TGG | + | chr7.4:3388552-3388571 | MS.gene78595:intron | 25.0% |
| !! | TTGATTTTTACTTTCAACCT+TGG | + | chr7.4:3388668-3388687 | MS.gene78595:intron | 25.0% |
| !! | TTTGCACAATTAGTTTATGT+AGG | + | chr7.4:3388307-3388326 | MS.gene78595:intron | 25.0% |
| !!! | CAAAGTTTTAGCAATAGAAA+AGG | - | chr7.4:3388400-3388419 | None:intergenic | 25.0% |
| !!! | GTGAATAAACCTATTGATTT+AGG | + | chr7.4:3387296-3387315 | MS.gene78595:CDS | 25.0% |
| !!! | TTTTACTGTTCTAAGAGAAT+TGG | + | chr7.4:3387581-3387600 | MS.gene78595:CDS | 25.0% |
| AAAACTACCTCTCTAATCAA+AGG | - | chr7.4:3387527-3387546 | None:intergenic | 30.0% | |
| AATTCAAGGAGTAATGATCT+TGG | + | chr7.4:3388847-3388866 | MS.gene78595:intron | 30.0% | |
| CTCTATAAATAATGCATGAC+AGG | - | chr7.4:3388095-3388114 | None:intergenic | 30.0% | |
| CTTACATTACCAAGTAGAAA+AGG | + | chr7.4:3388177-3388196 | MS.gene78595:intron | 30.0% | |
| GTATGTTACAACAAAGAACT+AGG | + | chr7.4:3388608-3388627 | MS.gene78595:intron | 30.0% | |
| TCGAAATCTCTCATAATTCA+TGG | + | chr7.4:3388125-3388144 | MS.gene78595:intron | 30.0% | |
| ! | AAAACTTTTCCAATCTCTTC+AGG | - | chr7.4:3387323-3387342 | None:intergenic | 30.0% |
| ! | AACATTGATATTTGATGGCA+CGG | - | chr7.4:3388226-3388245 | None:intergenic | 30.0% |
| ! | ACTTAAAACTAGTCTAGTGA+AGG | + | chr7.4:3388368-3388387 | MS.gene78595:intron | 30.0% |
| ! | GAAGAGATTGGAAAAGTTTT+GGG | + | chr7.4:3387323-3387342 | MS.gene78595:CDS | 30.0% |
| ! | TCAACTTTTCTGACAGTTTT+TGG | - | chr7.4:3389199-3389218 | None:intergenic | 30.0% |
| ! | TGAAGAGATTGGAAAAGTTT+TGG | + | chr7.4:3387322-3387341 | MS.gene78595:CDS | 30.0% |
| ! | TGTTTCTTTAATGGGTGTAT+AGG | - | chr7.4:3388263-3388282 | None:intergenic | 30.0% |
| ! | TTGATTAGAGAGGTAGTTTT+AGG | + | chr7.4:3387527-3387546 | MS.gene78595:CDS | 30.0% |
| ! | TTTAGGGTTTACTGCAAATT+GGG | + | chr7.4:3387403-3387422 | MS.gene78595:CDS | 30.0% |
| ! | TTTTGCATGATTCAGCTTTA+GGG | + | chr7.4:3387387-3387406 | MS.gene78595:CDS | 30.0% |
| !! | ACCACTTTTGCAAAAACATA+AGG | - | chr7.4:3387557-3387576 | None:intergenic | 30.0% |
| !! | TAGCTTTGATTTAGCTGAAT+GGG | + | chr7.4:3387691-3387710 | MS.gene78595:CDS | 30.0% |
| !! | TCCTTATGTTTTTGCAAAAG+TGG | + | chr7.4:3387553-3387572 | MS.gene78595:CDS | 30.0% |
| !! | TGATTAGAGAGGTAGTTTTA+GGG | + | chr7.4:3387528-3387547 | MS.gene78595:CDS | 30.0% |
| !!! | TATACTTTGGGATGTTTTCA+TGG | + | chr7.4:3388539-3388558 | MS.gene78595:intron | 30.0% |
| !!! | TCACTAGACTAGTTTTAAGT+TGG | - | chr7.4:3388368-3388387 | None:intergenic | 30.0% |
| !!! | TTTTCTGTTTGCTGTTTCTT+AGG | + | chr7.4:3389120-3389139 | MS.gene78595:intron | 30.0% |
| ACTAATGATGAGCTAATGTC+AGG | - | chr7.4:3388512-3388531 | None:intergenic | 35.0% | |
| AGTAATGATCTTGGTTCCTT+TGG | + | chr7.4:3388856-3388875 | MS.gene78595:intron | 35.0% | |
| CAAGGTTTCTTTGCTTTCAT+TGG | - | chr7.4:3388978-3388997 | None:intergenic | 35.0% | |
| CATCAAACATCTTCTGTATG+TGG | - | chr7.4:3389243-3389262 | None:intergenic | 35.0% | |
| CTGGTTATATGGATGCATAT+GGG | + | chr7.4:3389335-3389354 | MS.gene78595:CDS | 35.0% | |
| GATGAAGCTAAAAGTGATGA+TGG | + | chr7.4:3389259-3389278 | MS.gene78595:CDS | 35.0% | |
| GGTTCATTCTGTCTCATATT+AGG | - | chr7.4:3388338-3388357 | None:intergenic | 35.0% | |
| GTAATGATCTTGGTTCCTTT+GGG | + | chr7.4:3388857-3388876 | MS.gene78595:intron | 35.0% | |
| GTAATGCTCGAATTAAGAAC+AGG | - | chr7.4:3388049-3388068 | None:intergenic | 35.0% | |
| TAATGATCTTGGTTCCTTTG+GGG | + | chr7.4:3388858-3388877 | MS.gene78595:intron | 35.0% | |
| TATGCGTACATAAATGGAAG+AGG | - | chr7.4:3388433-3388452 | None:intergenic | 35.0% | |
| TCATGCAAAACCAAATGAAC+AGG | - | chr7.4:3387377-3387396 | None:intergenic | 35.0% | |
| TCTTCAGGACCTAAATCAAT+AGG | - | chr7.4:3387308-3387327 | None:intergenic | 35.0% | |
| TTCTTAATTCGAGCATTACG+TGG | + | chr7.4:3388050-3388069 | MS.gene78595:intron | 35.0% | |
| ! | AGCTTTGATTTAGCTGAATG+GGG | + | chr7.4:3387692-3387711 | MS.gene78595:CDS | 35.0% |
| ! | CTATCAAAGCCTTTTCTACT+TGG | - | chr7.4:3388189-3388208 | None:intergenic | 35.0% |
| ! | GTTTTGCATGATTCAGCTTT+AGG | + | chr7.4:3387386-3387405 | MS.gene78595:CDS | 35.0% |
| ! | TAAAACTAGTCTAGTGAAGG+AGG | + | chr7.4:3388371-3388390 | MS.gene78595:intron | 35.0% |
| ! | TTCTAAGAGAATTGGTGGTT+TGG | + | chr7.4:3387589-3387608 | MS.gene78595:CDS | 35.0% |
| ! | TTCTAGCTAGAATGTCAAAG+AGG | + | chr7.4:3387270-3387289 | MS.gene78595:CDS | 35.0% |
| !! | AAGTTTGTTACTCATTCTGG+AGG | + | chr7.4:3387824-3387843 | MS.gene78595:CDS | 35.0% |
| !! | CTAGCTTTGATTTAGCTGAA+TGG | + | chr7.4:3387690-3387709 | MS.gene78595:CDS | 35.0% |
| !! | CTTTAGGGTTTACTGCAAAT+TGG | + | chr7.4:3387402-3387421 | MS.gene78595:CDS | 35.0% |
| !! | GCAAAGTTTGTTACTCATTC+TGG | + | chr7.4:3387821-3387840 | MS.gene78595:CDS | 35.0% |
| !! | TACTGTTCTAAGAGAATTGG+TGG | + | chr7.4:3387584-3387603 | MS.gene78595:CDS | 35.0% |
| !! | TGCTTTTCCTATTTGGGTTT+TGG | + | chr7.4:3387496-3387515 | MS.gene78595:CDS | 35.0% |
| !!! | TAGTTTTAAGTTGGAGCATG+AGG | - | chr7.4:3388359-3388378 | None:intergenic | 35.0% |
| AACATCTTCTGTATGTGGTC+TGG | - | chr7.4:3389238-3389257 | None:intergenic | 40.0% | |
| AACTGATCTGGTCTAGTGAT+TGG | + | chr7.4:3387747-3387766 | MS.gene78595:CDS | 40.0% | |
| AAGACCATTGTAGTTCACCA+AGG | - | chr7.4:3388688-3388707 | None:intergenic | 40.0% | |
| ACATCTTCTGTATGTGGTCT+GGG | - | chr7.4:3389237-3389256 | None:intergenic | 40.0% | |
| ATAATGCATGACAGGCACTA+TGG | - | chr7.4:3388087-3388106 | None:intergenic | 40.0% | |
| ATATGCCAATGCAACTGATC+TGG | + | chr7.4:3387735-3387754 | MS.gene78595:CDS | 40.0% | |
| CATCCATATAACCAGCTTCA+TGG | - | chr7.4:3389330-3389349 | None:intergenic | 40.0% | |
| CATCCATGAAGCTGGTTATA+TGG | + | chr7.4:3389324-3389343 | MS.gene78595:CDS | 40.0% | |
| CCAGCATATGCGTACATAAA+TGG | - | chr7.4:3388439-3388458 | None:intergenic | 40.0% | |
| CCATTTATGTACGCATATGC+TGG | + | chr7.4:3388436-3388455 | MS.gene78595:intron | 40.0% | |
| GATTTAGGTCCTGAAGAGAT+TGG | + | chr7.4:3387311-3387330 | MS.gene78595:CDS | 40.0% | |
| GCTGGTTATATGGATGCATA+TGG | + | chr7.4:3389334-3389353 | MS.gene78595:CDS | 40.0% | |
| GGAACATCCAAAACCCAAAT+AGG | - | chr7.4:3387506-3387525 | None:intergenic | 40.0% | |
| GGAGAGGTTATTGCTACATT+AGG | + | chr7.4:3387344-3387363 | MS.gene78595:CDS | 40.0% | |
| GGATGTTCCTTTGATTAGAG+AGG | + | chr7.4:3387517-3387536 | MS.gene78595:CDS | 40.0% | |
| TATATGGATGCATATGGGCT+TGG | + | chr7.4:3389340-3389359 | MS.gene78595:CDS | 40.0% | |
| TCAACCTTGGTGAACTACAA+TGG | + | chr7.4:3388681-3388700 | MS.gene78595:intron | 40.0% | |
| TGAGTAACAAACTTTGCCCA+AGG | - | chr7.4:3387818-3387837 | None:intergenic | 40.0% | |
| TTGGTCATGGACCAAATGAT+TGG | + | chr7.4:3389359-3389378 | MS.gene78595:CDS | 40.0% | |
| TTTGGATGCTGATGCACATA+GGG | + | chr7.4:3387607-3387626 | MS.gene78595:CDS | 40.0% | |
| ! | ATTCGGGTGCTTTTCCTATT+TGG | + | chr7.4:3387489-3387508 | MS.gene78595:CDS | 40.0% |
| ! | TTCGGGTGCTTTTCCTATTT+GGG | + | chr7.4:3387490-3387509 | MS.gene78595:CDS | 40.0% |
| ! | TTTGATTTAGCTGAATGGGG+TGG | + | chr7.4:3387695-3387714 | MS.gene78595:CDS | 40.0% |
| !! | AGGATTAGCTCCTGTTCATT+TGG | + | chr7.4:3387364-3387383 | MS.gene78595:CDS | 40.0% |
| !! | AGTGATGATGGTCATGATCA+TGG | + | chr7.4:3389271-3389290 | MS.gene78595:CDS | 40.0% |
| !! | CTAGTGATTGGTCTGTAGAA+TGG | + | chr7.4:3387759-3387778 | MS.gene78595:CDS | 40.0% |
| !! | TCTGTTTGCTGTTTCTTAGG+AGG | + | chr7.4:3389123-3389142 | MS.gene78595:intron | 40.0% |
| !!! | GATTGGAAAAGTTTTGGGAG+AGG | + | chr7.4:3387328-3387347 | MS.gene78595:CDS | 40.0% |
| AAAATCAGGAGGCAAGAGCA+AGG | - | chr7.4:3388996-3389015 | None:intergenic | 45.0% | |
| ATCTTCTCTTCTCTCCCCAA+AGG | - | chr7.4:3388875-3388894 | None:intergenic | 45.0% | |
| CTAGACCAGATCAGTTGCAT+TGG | - | chr7.4:3387743-3387762 | None:intergenic | 45.0% | |
| GATGGTCATGATCATGGTCA+CGG | + | chr7.4:3389277-3389296 | MS.gene78595:CDS | 45.0% | |
| GATTCGGATCCATCAAGAGT+AGG | - | chr7.4:3389045-3389064 | None:intergenic | 45.0% | |
| GTTTGGATGCTGATGCACAT+AGG | + | chr7.4:3387606-3387625 | MS.gene78595:CDS | 45.0% | |
| ! | AAAGCACCCGAATTTGAAGG+TGG | - | chr7.4:3387482-3387501 | None:intergenic | 45.0% |
| ! | TCTGTATGTGGTCTGGGATA+GGG | - | chr7.4:3389231-3389250 | None:intergenic | 45.0% |
| ! | TTCTGTATGTGGTCTGGGAT+AGG | - | chr7.4:3389232-3389251 | None:intergenic | 45.0% |
| !! | ATAGGGTGCTGTTGAAGTCT+GGG | + | chr7.4:3387624-3387643 | MS.gene78595:CDS | 45.0% |
| !! | CATATGCTGGTTTGACGTTC+TGG | + | chr7.4:3388449-3388468 | MS.gene78595:intron | 45.0% |
| !! | GGAAAAGCACCCGAATTTGA+AGG | - | chr7.4:3387485-3387504 | None:intergenic | 45.0% |
| AATGGAGTCGCGAAGGGAAT+CGG | + | chr7.4:3387777-3387796 | MS.gene78595:CDS | 50.0% | |
| ACCCGAATTTGAAGGTGGCA+CGG | - | chr7.4:3387477-3387496 | None:intergenic | 50.0% | |
| AGAGTAGGCGAATAGCCGAA+TGG | - | chr7.4:3389030-3389049 | None:intergenic | 50.0% | |
| AGGAAAGCGGTTGTGGCTAT+TGG | + | chr7.4:3387653-3387672 | MS.gene78595:CDS | 50.0% | |
| CATGGATGTGAGCTTCACCA+AGG | - | chr7.4:3389312-3389331 | None:intergenic | 50.0% | |
| CTGTAGAATGGAGTCGCGAA+GGG | + | chr7.4:3387771-3387790 | MS.gene78595:CDS | 50.0% | |
| GAAGCTCACATCCATGAAGC+TGG | + | chr7.4:3389316-3389335 | MS.gene78595:CDS | 50.0% | |
| GAGTAGGCGAATAGCCGAAT+GGG | - | chr7.4:3389029-3389048 | None:intergenic | 50.0% | |
| GGCTATTCGCCTACTCTTGA+TGG | + | chr7.4:3389033-3389052 | MS.gene78595:intron | 50.0% | |
| TCTGTAGAATGGAGTCGCGA+AGG | + | chr7.4:3387770-3387789 | MS.gene78595:CDS | 50.0% | |
| TGTTGAAGTCTGGGGATGGA+AGG | + | chr7.4:3387633-3387652 | MS.gene78595:CDS | 50.0% | |
| ! | CTGTATGTGGTCTGGGATAG+GGG | - | chr7.4:3389230-3389249 | None:intergenic | 50.0% |
| ! | GATGCATATGGGCTTGGTCA+TGG | + | chr7.4:3389346-3389365 | MS.gene78595:CDS | 50.0% |
| ! | TACTCATTCTGGAGGCCGTT+GGG | + | chr7.4:3387832-3387851 | MS.gene78595:CDS | 50.0% |
| ! | TGTATGTGGTCTGGGATAGG+GGG | - | chr7.4:3389229-3389248 | None:intergenic | 50.0% |
| ! | TTACTCATTCTGGAGGCCGT+TGG | + | chr7.4:3387831-3387850 | MS.gene78595:CDS | 50.0% |
| !! | CATAGGGTGCTGTTGAAGTC+TGG | + | chr7.4:3387623-3387642 | MS.gene78595:CDS | 50.0% |
| !! | TAGGGTGCTGTTGAAGTCTG+GGG | + | chr7.4:3387625-3387644 | MS.gene78595:CDS | 50.0% |
| ATGGAGTCGCGAAGGGAATC+GGG | + | chr7.4:3387778-3387797 | MS.gene78595:CDS | 55.0% | |
| CCCGAATTTGAAGGTGGCAC+GGG | - | chr7.4:3387476-3387495 | None:intergenic | 55.0% | |
| CCCGTGCCACCTTCAAATTC+GGG | + | chr7.4:3387473-3387492 | MS.gene78595:CDS | 55.0% | |
| GCCCGTGCCACCTTCAAATT+CGG | + | chr7.4:3387472-3387491 | MS.gene78595:CDS | 55.0% | |
| GGATGGAAGGAAAGCGGTTG+TGG | + | chr7.4:3387646-3387665 | MS.gene78595:CDS | 55.0% | |
| GGTTGCTGGTGCTCTTCCTT+GGG | + | chr7.4:3387799-3387818 | MS.gene78595:CDS | 55.0% | |
| GTCTGGGGATGGAAGGAAAG+CGG | + | chr7.4:3387640-3387659 | MS.gene78595:CDS | 55.0% | |
| TTGTGCACACCTGAGCCCAA+CGG | - | chr7.4:3387850-3387869 | None:intergenic | 55.0% | |
| ! | GTGCTGTTGAAGTCTGGGGA+TGG | + | chr7.4:3387629-3387648 | MS.gene78595:CDS | 55.0% |
| !! | GCTGAATGGGGTGGTTCTGA+TGG | + | chr7.4:3387704-3387723 | MS.gene78595:CDS | 55.0% |
| GGGTTGCTGGTGCTCTTCCT+TGG | + | chr7.4:3387798-3387817 | MS.gene78595:CDS | 60.0% | |
| GGTCACGGACATGATCGCCT+TGG | + | chr7.4:3389292-3389311 | MS.gene78595:CDS | 60.0% | |
| ! | CGCGAAGGGAATCGGGTTGC+TGG | + | chr7.4:3387785-3387804 | MS.gene78595:CDS | 65.0% |
| ! | TTCTGGAGGCCGTTGGGCTC+AGG | + | chr7.4:3387838-3387857 | MS.gene78595:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 3387266 | 3389384 | 3387266 | ID=MS.gene78595 |
| chr7.4 | mRNA | 3387266 | 3389384 | 3387266 | ID=MS.gene78595.t1;Parent=MS.gene78595 |
| chr7.4 | exon | 3387266 | 3387859 | 3387266 | ID=MS.gene78595.t1.exon1;Parent=MS.gene78595.t1 |
| chr7.4 | CDS | 3387266 | 3387859 | 3387266 | ID=cds.MS.gene78595.t1;Parent=MS.gene78595.t1 |
| chr7.4 | exon | 3389142 | 3389384 | 3389142 | ID=MS.gene78595.t1.exon2;Parent=MS.gene78595.t1 |
| chr7.4 | CDS | 3389142 | 3389384 | 3389142 | ID=cds.MS.gene78595.t1;Parent=MS.gene78595.t1 |
| Gene Sequence |
| Protein sequence |
