Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78596.t1 | XP_003626280.1 | 69.8 | 265 | 34 | 5 | 1 | 220 | 190 | 453 | 2.10E-79 | 305.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78596.t1 | Q9FZ33 | 44.8 | 261 | 100 | 6 | 2 | 220 | 184 | 442 | 6.6e-50 | 198.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78596.t1 | G7KYN0 | 69.8 | 265 | 34 | 5 | 1 | 220 | 190 | 453 | 1.5e-79 | 305.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene052665 | MS.gene78596 | 0.803012 | 4.27E-49 | -1.69E-46 |
| MS.gene056432 | MS.gene78596 | 0.814329 | 1.63E-51 | -1.69E-46 |
| MS.gene058906 | MS.gene78596 | 0.808617 | 2.84E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 62 sgRNAs with CRISPR-Local
Find 143 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCAAAGTTTGTTACTCATTC+TGG | 0.188700 | 7.4:-3366934 | MS.gene78596:CDS |
| GGTTTCTGAGAATTTAAATT+TGG | 0.212168 | 7.4:-3367332 | MS.gene78596:CDS |
| TGAAGAGATTGGAAAAGTTT+TGG | 0.215909 | 7.4:-3367434 | MS.gene78596:intron |
| CTTTAGGGTTTACTGCAAAT+TGG | 0.234894 | 7.4:-3367354 | MS.gene78596:CDS |
| TTTGATCAAATTGTTGAAAC+TGG | 0.289054 | 7.4:-3367528 | MS.gene78596:CDS |
| AGGATTAGCTCCTGTTCATT+TGG | 0.321069 | 7.4:-3367392 | MS.gene78596:CDS |
| CTCTGTATGTGGTCTGGGAT+AGG | 0.322352 | 7.4:+3365531 | None:intergenic |
| GGGTTGCTGGTGCTCTTCCT+TGG | 0.322738 | 7.4:-3366957 | MS.gene78596:CDS |
| GGAGAGGTTATTGCTACATT+AGG | 0.331260 | 7.4:-3367412 | MS.gene78596:CDS |
| CGCGAAGGGAATCGGGTTGC+TGG | 0.337738 | 7.4:-3366970 | MS.gene78596:CDS |
| CGCCCGTGCCACCTTCAATT+CGG | 0.338213 | 7.4:-3367285 | MS.gene78596:CDS |
| TCTGTATGTGGTCTGGGATA+GGG | 0.339956 | 7.4:+3365532 | None:intergenic |
| GGTTGCTGGTGCTCTTCCTT+GGG | 0.365766 | 7.4:-3366956 | MS.gene78596:CDS |
| GCCCGTGCCACCTTCAATTC+GGG | 0.372756 | 7.4:-3367284 | MS.gene78596:intron |
| AATGGAGTCGCGAAGGGAAT+CGG | 0.375141 | 7.4:-3366978 | MS.gene78596:CDS |
| TAGCTTTGATTTAGCTGAAT+GGG | 0.376044 | 7.4:-3367064 | MS.gene78596:CDS |
| AAACATCTCTGTATGTGGTC+TGG | 0.377433 | 7.4:+3365525 | None:intergenic |
| TTTAGGGTTTACTGCAAATT+GGG | 0.387005 | 7.4:-3367353 | MS.gene78596:CDS |
| CTGTATGTGGTCTGGGATAG+GGG | 0.394585 | 7.4:+3365533 | None:intergenic |
| AGGAAAGCGGTTGTGGCTAT+TGG | 0.398736 | 7.4:-3367102 | MS.gene78596:CDS |
| ATAGGGTGCTGTTTGAAGTC+TGG | 0.399409 | 7.4:-3367132 | MS.gene78596:CDS |
| TACTCATTCTGGAGGGCCGT+TGG | 0.411608 | 7.4:-3366923 | MS.gene78596:CDS |
| TATAGTGAGATTCAAGAAAA+GGG | 0.425324 | 7.4:-3367564 | None:intergenic |
| ATGGAGTCGCGAAGGGAATC+GGG | 0.426920 | 7.4:-3366977 | MS.gene78596:CDS |
| TTATAGTGAGATTCAAGAAA+AGG | 0.427517 | 7.4:-3367565 | None:intergenic |
| ACTAAGAGAATTGGGTGGTT+TGG | 0.427772 | 7.4:-3367167 | MS.gene78596:intron |
| AACATCTCTGTATGTGGTCT+GGG | 0.432568 | 7.4:+3365526 | None:intergenic |
| AACTGGACAAATTCCTTATG+AGG | 0.434249 | 7.4:-3367511 | MS.gene78596:CDS |
| TAGGGTGCTGTTTGAAGTCT+GGG | 0.435802 | 7.4:-3367131 | MS.gene78596:CDS |
| TCTGGAGGGCCGTTGGGCTC+AGG | 0.436457 | 7.4:-3366916 | MS.gene78596:CDS |
| ACTCATTCTGGAGGGCCGTT+GGG | 0.438673 | 7.4:-3366922 | MS.gene78596:CDS |
| CTAGCTAGAACTTCCTCATA+AGG | 0.463412 | 7.4:+3367498 | None:intergenic |
| TCATGCAAAACCAAATGAAC+AGG | 0.463756 | 7.4:+3367382 | None:intergenic |
| CTAGCTTTGATTTAGCTGAA+TGG | 0.469276 | 7.4:-3367065 | MS.gene78596:CDS |
| GCTGAATGGGGTGGTTCTGA+TGG | 0.473143 | 7.4:-3367051 | MS.gene78596:CDS |
| AGGAAAAGCACCCGAATTGA+AGG | 0.474996 | 7.4:+3367274 | None:intergenic |
| GGATGGAAGGAAAGCGGTTG+TGG | 0.475697 | 7.4:-3367109 | MS.gene78596:CDS |
| ATATGCCAATGCAACTGATC+TGG | 0.483350 | 7.4:-3367020 | MS.gene78596:CDS |
| TGTATGTGGTCTGGGATAGG+GGG | 0.510763 | 7.4:+3365534 | None:intergenic |
| ACCCGAATTGAAGGTGGCAC+GGG | 0.523854 | 7.4:+3367283 | None:intergenic |
| AACTGATCTGGTCTAGTGAT+TGG | 0.528070 | 7.4:-3367008 | MS.gene78596:CDS |
| CTAGTGATTGGTCTGTAGAA+TGG | 0.529699 | 7.4:-3366996 | MS.gene78596:CDS |
| TTTGGATGCTGATGCACATA+GGG | 0.533671 | 7.4:-3367149 | MS.gene78596:CDS |
| TGCTGTTTGAAGTCTGGGGA+TGG | 0.541801 | 7.4:-3367126 | MS.gene78596:CDS |
| AGCTTTGATTTAGCTGAATG+GGG | 0.545831 | 7.4:-3367063 | MS.gene78596:CDS |
| CTAGACCAGATCAGTTGCAT+TGG | 0.554156 | 7.4:+3367015 | None:intergenic |
| GTTTGGATGCTGATGCACAT+AGG | 0.560246 | 7.4:-3367150 | MS.gene78596:CDS |
| CACCCGAATTGAAGGTGGCA+CGG | 0.561582 | 7.4:+3367282 | None:intergenic |
| TCATCAAACATCTCTGTATG+TGG | 0.563265 | 7.4:+3365520 | None:intergenic |
| AAGTTTGTTACTCATTCTGG+AGG | 0.573750 | 7.4:-3366931 | MS.gene78596:CDS |
| CTGTAGAATGGAGTCGCGAA+GGG | 0.589757 | 7.4:-3366984 | MS.gene78596:CDS |
| TTTGATTTAGCTGAATGGGG+TGG | 0.595613 | 7.4:-3367060 | MS.gene78596:CDS |
| TTCTAGCTAGAATGTCAAAG+AGG | 0.614198 | 7.4:-3367485 | MS.gene78596:CDS |
| GTTTGAAGTCTGGGGATGGA+AGG | 0.615515 | 7.4:-3367122 | MS.gene78596:CDS |
| TCTGTAGAATGGAGTCGCGA+AGG | 0.618026 | 7.4:-3366985 | MS.gene78596:CDS |
| GTCTGGGGATGGAAGGAAAG+CGG | 0.630612 | 7.4:-3367115 | MS.gene78596:CDS |
| TGAGTAACAAACTTTGCCCA+AGG | 0.635006 | 7.4:+3366940 | None:intergenic |
| TTGTGCACACCTGAGCCCAA+CGG | 0.635966 | 7.4:+3366907 | None:intergenic |
| AAAAGCACCCGAATTGAAGG+TGG | 0.652303 | 7.4:+3367277 | None:intergenic |
| AGTTTGTTACTCATTCTGGA+GGG | 0.660568 | 7.4:-3366930 | MS.gene78596:CDS |
| ACTGTACTAAGAGAATTGGG+TGG | 0.708403 | 7.4:-3367172 | MS.gene78596:intron |
| AGGGTGCTGTTTGAAGTCTG+GGG | 0.732228 | 7.4:-3367130 | MS.gene78596:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AACAAATGTGTTTCTTTAAT+GGG | + | chr7.4:3366582-3366601 | None:intergenic | 20.0% |
| !! | AATATTAGATACAGAATGAA+AGG | - | chr7.4:3367083-3367102 | MS.gene78596:CDS | 20.0% |
| !! | ATATACACAAATAAACGATT+CGG | + | chr7.4:3367370-3367389 | None:intergenic | 20.0% |
| !! | ATTTATCATGAATCAACTAA+TGG | + | chr7.4:3367140-3367159 | None:intergenic | 20.0% |
| !! | TTTATCATGAATCAACTAAT+GGG | + | chr7.4:3367139-3367158 | None:intergenic | 20.0% |
| !!! | AAAGTTTTAGCAATAGAAAA+GGG | + | chr7.4:3366710-3366729 | None:intergenic | 20.0% |
| !!! | ATTTTTTTTCATATCCCATT+CGG | - | chr7.4:3367321-3367340 | MS.gene78596:CDS | 20.0% |
| ! | AAGTCAACATTGATATTTGA+TGG | + | chr7.4:3366542-3366561 | None:intergenic | 25.0% |
| ! | AATTGGATTGAAATGAATAC+TGG | - | chr7.4:3366254-3366273 | MS.gene78596:intron | 25.0% |
| ! | AGTGAATAAACCTATGATTT+AGG | - | chr7.4:3365608-3365627 | MS.gene78596:CDS | 25.0% |
| ! | ATGGGATATGAAAAAAAATC+AGG | + | chr7.4:3367320-3367339 | None:intergenic | 25.0% |
| ! | CAACAAATGTGTTTCTTTAA+TGG | + | chr7.4:3366583-3366602 | None:intergenic | 25.0% |
| ! | GATGTTCAAAATGATATTTG+AGG | - | chr7.4:3367202-3367221 | MS.gene78596:intron | 25.0% |
| ! | GTTGTGTAGAATTGTTTAAT+TGG | - | chr7.4:3366237-3366256 | MS.gene78596:intron | 25.0% |
| ! | TAGGAAAGTCTTTATAGAAT+TGG | - | chr7.4:3366938-3366957 | MS.gene78596:CDS | 25.0% |
| ! | TTTACTGTACTAAGAGAATT+GGG | - | chr7.4:3365893-3365912 | MS.gene78596:intron | 25.0% |
| ! | TTTGATCAAATTGTTGAAAC+TGG | - | chr7.4:3365540-3365559 | MS.gene78596:CDS | 25.0% |
| !! | GGTTTCTGAGAATTTAAATT+TGG | - | chr7.4:3365736-3365755 | MS.gene78596:intron | 25.0% |
| !! | GTTGATTCATGATAAATTCA+AGG | - | chr7.4:3367143-3367162 | MS.gene78596:CDS | 25.0% |
| !! | GTTTTCATGGAATTTGTAAA+TGG | - | chr7.4:3366864-3366883 | MS.gene78596:intron | 25.0% |
| !! | TAGTTTTCCTCTTATACTTT+GGG | - | chr7.4:3366839-3366858 | MS.gene78596:intron | 25.0% |
| !! | TTGATTTTTACTTTCAACCT+TGG | - | chr7.4:3366979-3366998 | MS.gene78596:CDS | 25.0% |
| !! | TTGCACAATTAGTTTATGTA+GGG | - | chr7.4:3366619-3366638 | MS.gene78596:intron | 25.0% |
| !! | TTTGCACAATTAGTTTATGT+AGG | - | chr7.4:3366618-3366637 | MS.gene78596:intron | 25.0% |
| !! | TTTTACTGTACTAAGAGAAT+TGG | - | chr7.4:3365892-3365911 | MS.gene78596:intron | 25.0% |
| !!! | CAAAGTTTTAGCAATAGAAA+AGG | + | chr7.4:3366711-3366730 | None:intergenic | 25.0% |
| !!! | TCAAGAAAAGGGTTTTTTTT+GGG | - | chr7.4:3365515-3365534 | MS.gene78596:CDS | 25.0% |
| !!! | TTAGTTTTCCTCTTATACTT+TGG | - | chr7.4:3366838-3366857 | MS.gene78596:intron | 25.0% |
| !!! | TTCAAGAAAAGGGTTTTTTT+TGG | - | chr7.4:3365514-3365533 | MS.gene78596:CDS | 25.0% |
| AAAACATCCCAAAGTATAAG+AGG | + | chr7.4:3366849-3366868 | None:intergenic | 30.0% | |
| AAAACTACCTCTCTAATCAA+AGG | + | chr7.4:3365838-3365857 | None:intergenic | 30.0% | |
| AATTCAAGGAGTAATGATCT+TGG | - | chr7.4:3367157-3367176 | MS.gene78596:CDS | 30.0% | |
| AGTTAATTAGCACATGACAT+AGG | + | chr7.4:3367237-3367256 | None:intergenic | 30.0% | |
| CTCTATAAATAATGCATGAC+AGG | + | chr7.4:3366406-3366425 | None:intergenic | 30.0% | |
| CTTACATTACCAAGTAGAAA+AGG | - | chr7.4:3366488-3366507 | MS.gene78596:intron | 30.0% | |
| GGATATGAAAAAAAATCAGG+AGG | + | chr7.4:3367317-3367336 | None:intergenic | 30.0% | |
| GTATGTTACAACAAAGAACT+AGG | - | chr7.4:3366919-3366938 | MS.gene78596:CDS | 30.0% | |
| TCGAAATCTCTCATAATTCA+TGG | - | chr7.4:3366436-3366455 | MS.gene78596:intron | 30.0% | |
| ! | AAAACTTTTCCAATCTCTTC+AGG | + | chr7.4:3365635-3365654 | None:intergenic | 30.0% |
| ! | AACATTGATATTTGATGGCA+CGG | + | chr7.4:3366537-3366556 | None:intergenic | 30.0% |
| ! | ACTTAAAACTAGTCTAGTGA+AGG | - | chr7.4:3366679-3366698 | MS.gene78596:intron | 30.0% |
| ! | GAAGAGATTGGAAAAGTTTT+GGG | - | chr7.4:3365635-3365654 | MS.gene78596:intron | 30.0% |
| ! | TCAACTTTTCTGACAGTTTT+TGG | + | chr7.4:3367507-3367526 | None:intergenic | 30.0% |
| ! | TGAAGAGATTGGAAAAGTTT+TGG | - | chr7.4:3365634-3365653 | MS.gene78596:intron | 30.0% |
| ! | TGTTTCTTTAATGGGTGTAT+AGG | + | chr7.4:3366574-3366593 | None:intergenic | 30.0% |
| ! | TTGATTAGAGAGGTAGTTTT+AGG | - | chr7.4:3365838-3365857 | MS.gene78596:intron | 30.0% |
| ! | TTTAGGGTTTACTGCAAATT+GGG | - | chr7.4:3365715-3365734 | MS.gene78596:intron | 30.0% |
| ! | TTTTGCATGATTCAGCTTTA+GGG | - | chr7.4:3365699-3365718 | MS.gene78596:intron | 30.0% |
| !! | ACCACTTTTGCAAAAACATA+AGG | + | chr7.4:3365868-3365887 | None:intergenic | 30.0% |
| !! | TAGCTTTGATTTAGCTGAAT+GGG | - | chr7.4:3366004-3366023 | MS.gene78596:intron | 30.0% |
| !! | TCCTTATGTTTTTGCAAAAG+TGG | - | chr7.4:3365864-3365883 | MS.gene78596:intron | 30.0% |
| !! | TGATTAGAGAGGTAGTTTTA+GGG | - | chr7.4:3365839-3365858 | MS.gene78596:intron | 30.0% |
| !!! | TATACTTTGGGATGTTTTCA+TGG | - | chr7.4:3366851-3366870 | MS.gene78596:intron | 30.0% |
| !!! | TCACTAGACTAGTTTTAAGT+TGG | + | chr7.4:3366679-3366698 | None:intergenic | 30.0% |
| !!! | TTTTCTGTTAGCTGTTTCTT+AGG | - | chr7.4:3367428-3367447 | MS.gene78596:CDS | 30.0% |
| AACTGGACAAATTCCTTATG+AGG | - | chr7.4:3365557-3365576 | MS.gene78596:CDS | 35.0% | |
| ACTAATGATGAGCTAATGTC+AGG | + | chr7.4:3366823-3366842 | None:intergenic | 35.0% | |
| AGTAATGATCTTGGTTCCTT+TGG | - | chr7.4:3367166-3367185 | MS.gene78596:intron | 35.0% | |
| CAAGGTTTCTTTGCTTTCAT+TGG | + | chr7.4:3367288-3367307 | None:intergenic | 35.0% | |
| GGTTCATTCTGTCTCATATT+AGG | + | chr7.4:3366649-3366668 | None:intergenic | 35.0% | |
| GTAATGATCTTGGTTCCTTT+GGG | - | chr7.4:3367167-3367186 | MS.gene78596:intron | 35.0% | |
| GTAATGCTCGAATTAAGAAC+AGG | + | chr7.4:3366361-3366380 | None:intergenic | 35.0% | |
| TAATGATCTTGGTTCCTTTG+GGG | - | chr7.4:3367168-3367187 | MS.gene78596:intron | 35.0% | |
| TATGCGTACATAAATGGAAG+AGG | + | chr7.4:3366744-3366763 | None:intergenic | 35.0% | |
| TCATCAAACATCTCTGTATG+TGG | + | chr7.4:3367551-3367570 | None:intergenic | 35.0% | |
| TCATGCAAAACCAAATGAAC+AGG | + | chr7.4:3365689-3365708 | None:intergenic | 35.0% | |
| TTCTTAATTCGAGCATTACG+TGG | - | chr7.4:3366362-3366381 | MS.gene78596:intron | 35.0% | |
| ! | AGCTTTGATTTAGCTGAATG+GGG | - | chr7.4:3366005-3366024 | MS.gene78596:intron | 35.0% |
| ! | CTATCAAAGCCTTTTCTACT+TGG | + | chr7.4:3366500-3366519 | None:intergenic | 35.0% |
| ! | GTTTTGCATGATTCAGCTTT+AGG | - | chr7.4:3365698-3365717 | MS.gene78596:intron | 35.0% |
| ! | TAAAACTAGTCTAGTGAAGG+AGG | - | chr7.4:3366682-3366701 | MS.gene78596:intron | 35.0% |
| ! | TTCTAGCTAGAATGTCAAAG+AGG | - | chr7.4:3365583-3365602 | MS.gene78596:CDS | 35.0% |
| !! | AAGTTTGTTACTCATTCTGG+AGG | - | chr7.4:3366137-3366156 | MS.gene78596:intron | 35.0% |
| !! | AGTTTGTTACTCATTCTGGA+GGG | - | chr7.4:3366138-3366157 | MS.gene78596:intron | 35.0% |
| !! | CTAGCTTTGATTTAGCTGAA+TGG | - | chr7.4:3366003-3366022 | MS.gene78596:intron | 35.0% |
| !! | CTTTAGGGTTTACTGCAAAT+TGG | - | chr7.4:3365714-3365733 | MS.gene78596:intron | 35.0% |
| !! | GCAAAGTTTGTTACTCATTC+TGG | - | chr7.4:3366134-3366153 | MS.gene78596:intron | 35.0% |
| !! | TGCTTTTCCTATTTGGGTTT+TGG | - | chr7.4:3365807-3365826 | MS.gene78596:intron | 35.0% |
| !!! | TAGTTTTAAGTTGGAGCATG+AGG | + | chr7.4:3366670-3366689 | None:intergenic | 35.0% |
| AAACATCTCTGTATGTGGTC+TGG | + | chr7.4:3367546-3367565 | None:intergenic | 40.0% | |
| AACATCTCTGTATGTGGTCT+GGG | + | chr7.4:3367545-3367564 | None:intergenic | 40.0% | |
| AACTGATCTGGTCTAGTGAT+TGG | - | chr7.4:3366060-3366079 | MS.gene78596:intron | 40.0% | |
| AAGACCATTGTAGTTCACCA+AGG | + | chr7.4:3366999-3367018 | None:intergenic | 40.0% | |
| ACTAAGAGAATTGGGTGGTT+TGG | - | chr7.4:3365901-3365920 | MS.gene78596:intron | 40.0% | |
| ACTGTACTAAGAGAATTGGG+TGG | - | chr7.4:3365896-3365915 | MS.gene78596:intron | 40.0% | |
| ATATGCCAATGCAACTGATC+TGG | - | chr7.4:3366048-3366067 | MS.gene78596:intron | 40.0% | |
| CCAGCATATGCGTACATAAA+TGG | + | chr7.4:3366750-3366769 | None:intergenic | 40.0% | |
| CCATTTATGTACGCATATGC+TGG | - | chr7.4:3366747-3366766 | MS.gene78596:intron | 40.0% | |
| CTAGCTAGAACTTCCTCATA+AGG | + | chr7.4:3365573-3365592 | None:intergenic | 40.0% | |
| CTCTTCAGGACCTAAATCAT+AGG | + | chr7.4:3365621-3365640 | None:intergenic | 40.0% | |
| GATTTAGGTCCTGAAGAGAT+TGG | - | chr7.4:3365623-3365642 | MS.gene78596:intron | 40.0% | |
| GGAACATCCAAAACCCAAAT+AGG | + | chr7.4:3365817-3365836 | None:intergenic | 40.0% | |
| GGAGAGGTTATTGCTACATT+AGG | - | chr7.4:3365656-3365675 | MS.gene78596:intron | 40.0% | |
| GGATGTTCCTTTGATTAGAG+AGG | - | chr7.4:3365828-3365847 | MS.gene78596:intron | 40.0% | |
| TCAACCTTGGTGAACTACAA+TGG | - | chr7.4:3366992-3367011 | MS.gene78596:CDS | 40.0% | |
| TGAGTAACAAACTTTGCCCA+AGG | + | chr7.4:3366131-3366150 | None:intergenic | 40.0% | |
| TTTGGATGCTGATGCACATA+GGG | - | chr7.4:3365919-3365938 | MS.gene78596:intron | 40.0% | |
| ! | ATTCGGGTGCTTTTCCTATT+TGG | - | chr7.4:3365800-3365819 | MS.gene78596:intron | 40.0% |
| ! | TTCGGGTGCTTTTCCTATTT+GGG | - | chr7.4:3365801-3365820 | MS.gene78596:intron | 40.0% |
| ! | TTTGATTTAGCTGAATGGGG+TGG | - | chr7.4:3366008-3366027 | MS.gene78596:intron | 40.0% |
| !! | AGGATTAGCTCCTGTTCATT+TGG | - | chr7.4:3365676-3365695 | MS.gene78596:intron | 40.0% |
| !! | CTAGTGATTGGTCTGTAGAA+TGG | - | chr7.4:3366072-3366091 | MS.gene78596:intron | 40.0% |
| !! | TCTGTTAGCTGTTTCTTAGG+AGG | - | chr7.4:3367431-3367450 | MS.gene78596:intron | 40.0% |
| !!! | GATTGGAAAAGTTTTGGGAG+AGG | - | chr7.4:3365640-3365659 | MS.gene78596:intron | 40.0% |
| AAAATCAGGAGGCAAGAGCA+AGG | + | chr7.4:3367306-3367325 | None:intergenic | 45.0% | |
| ATCTTCTCTTCTCTCCCCAA+AGG | + | chr7.4:3367185-3367204 | None:intergenic | 45.0% | |
| CTAGACCAGATCAGTTGCAT+TGG | + | chr7.4:3366056-3366075 | None:intergenic | 45.0% | |
| GATTCGGATCCATCAAGAGT+AGG | + | chr7.4:3367354-3367373 | None:intergenic | 45.0% | |
| GTTTGGATGCTGATGCACAT+AGG | - | chr7.4:3365918-3365937 | MS.gene78596:intron | 45.0% | |
| ! | TCTGTATGTGGTCTGGGATA+GGG | + | chr7.4:3367539-3367558 | None:intergenic | 45.0% |
| !! | AAAAGCACCCGAATTGAAGG+TGG | + | chr7.4:3365794-3365813 | None:intergenic | 45.0% |
| !! | AGGAAAAGCACCCGAATTGA+AGG | + | chr7.4:3365797-3365816 | None:intergenic | 45.0% |
| !! | ATAGGGTGCTGTTTGAAGTC+TGG | - | chr7.4:3365936-3365955 | MS.gene78596:intron | 45.0% |
| !! | CATATGCTGGTTTGACGTTC+TGG | - | chr7.4:3366760-3366779 | MS.gene78596:intron | 45.0% |
| !! | TAGGGTGCTGTTTGAAGTCT+GGG | - | chr7.4:3365937-3365956 | MS.gene78596:intron | 45.0% |
| AATGGAGTCGCGAAGGGAAT+CGG | - | chr7.4:3366090-3366109 | MS.gene78596:intron | 50.0% | |
| AGAGTAGGCGAATAGCCGAA+TGG | + | chr7.4:3367339-3367358 | None:intergenic | 50.0% | |
| AGGAAAGCGGTTGTGGCTAT+TGG | - | chr7.4:3365966-3365985 | MS.gene78596:intron | 50.0% | |
| CTGTAGAATGGAGTCGCGAA+GGG | - | chr7.4:3366084-3366103 | MS.gene78596:intron | 50.0% | |
| GAGTAGGCGAATAGCCGAAT+GGG | + | chr7.4:3367338-3367357 | None:intergenic | 50.0% | |
| GGCTATTCGCCTACTCTTGA+TGG | - | chr7.4:3367342-3367361 | MS.gene78596:CDS | 50.0% | |
| TCTGTAGAATGGAGTCGCGA+AGG | - | chr7.4:3366083-3366102 | MS.gene78596:intron | 50.0% | |
| ! | CTCTGTATGTGGTCTGGGAT+AGG | + | chr7.4:3367540-3367559 | None:intergenic | 50.0% |
| ! | CTGTATGTGGTCTGGGATAG+GGG | + | chr7.4:3367538-3367557 | None:intergenic | 50.0% |
| ! | GTTTGAAGTCTGGGGATGGA+AGG | - | chr7.4:3365946-3365965 | MS.gene78596:intron | 50.0% |
| ! | TGCTGTTTGAAGTCTGGGGA+TGG | - | chr7.4:3365942-3365961 | MS.gene78596:intron | 50.0% |
| ! | TGTATGTGGTCTGGGATAGG+GGG | + | chr7.4:3367537-3367556 | None:intergenic | 50.0% |
| !! | AGGGTGCTGTTTGAAGTCTG+GGG | - | chr7.4:3365938-3365957 | MS.gene78596:intron | 50.0% |
| ACCCGAATTGAAGGTGGCAC+GGG | + | chr7.4:3365788-3365807 | None:intergenic | 55.0% | |
| ATGGAGTCGCGAAGGGAATC+GGG | - | chr7.4:3366091-3366110 | MS.gene78596:intron | 55.0% | |
| CACCCGAATTGAAGGTGGCA+CGG | + | chr7.4:3365789-3365808 | None:intergenic | 55.0% | |
| GGATGGAAGGAAAGCGGTTG+TGG | - | chr7.4:3365959-3365978 | MS.gene78596:intron | 55.0% | |
| GGTTGCTGGTGCTCTTCCTT+GGG | - | chr7.4:3366112-3366131 | MS.gene78596:intron | 55.0% | |
| GTCTGGGGATGGAAGGAAAG+CGG | - | chr7.4:3365953-3365972 | MS.gene78596:intron | 55.0% | |
| TTGTGCACACCTGAGCCCAA+CGG | + | chr7.4:3366164-3366183 | None:intergenic | 55.0% | |
| ! | ACTCATTCTGGAGGGCCGTT+GGG | - | chr7.4:3366146-3366165 | MS.gene78596:intron | 55.0% |
| ! | TACTCATTCTGGAGGGCCGT+TGG | - | chr7.4:3366145-3366164 | MS.gene78596:intron | 55.0% |
| !! | GCTGAATGGGGTGGTTCTGA+TGG | - | chr7.4:3366017-3366036 | MS.gene78596:intron | 55.0% |
| CGCCCGTGCCACCTTCAATT+CGG | - | chr7.4:3365783-3365802 | MS.gene78596:intron | 60.0% | |
| GCCCGTGCCACCTTCAATTC+GGG | - | chr7.4:3365784-3365803 | MS.gene78596:intron | 60.0% | |
| GGGTTGCTGGTGCTCTTCCT+TGG | - | chr7.4:3366111-3366130 | MS.gene78596:intron | 60.0% | |
| ! | CGCGAAGGGAATCGGGTTGC+TGG | - | chr7.4:3366098-3366117 | MS.gene78596:intron | 65.0% |
| TCTGGAGGGCCGTTGGGCTC+AGG | - | chr7.4:3366152-3366171 | MS.gene78596:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 3365509 | 3367581 | 3365509 | ID=MS.gene78596 |
| chr7.4 | mRNA | 3365509 | 3367581 | 3365509 | ID=MS.gene78596.t1;Parent=MS.gene78596 |
| chr7.4 | exon | 3367482 | 3367581 | 3367482 | ID=MS.gene78596.t1.exon1;Parent=MS.gene78596.t1 |
| chr7.4 | CDS | 3367482 | 3367581 | 3367482 | ID=cds.MS.gene78596.t1;Parent=MS.gene78596.t1 |
| chr7.4 | exon | 3367285 | 3367449 | 3367285 | ID=MS.gene78596.t1.exon2;Parent=MS.gene78596.t1 |
| chr7.4 | CDS | 3367285 | 3367449 | 3367285 | ID=cds.MS.gene78596.t1;Parent=MS.gene78596.t1 |
| chr7.4 | exon | 3366915 | 3367181 | 3366915 | ID=MS.gene78596.t1.exon3;Parent=MS.gene78596.t1 |
| chr7.4 | CDS | 3366915 | 3367181 | 3366915 | ID=cds.MS.gene78596.t1;Parent=MS.gene78596.t1 |
| chr7.4 | exon | 3365509 | 3365640 | 3365509 | ID=MS.gene78596.t1.exon4;Parent=MS.gene78596.t1 |
| chr7.4 | CDS | 3365509 | 3365640 | 3365509 | ID=cds.MS.gene78596.t1;Parent=MS.gene78596.t1 |
| Gene Sequence |
| Protein sequence |
