AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene78721

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene78721.t1 MTR_5g053390 91.111 225 20 0 1 225 1 225 5.65e-155 430
MS.gene78721.t1 MTR_2g085280 72.458 236 65 0 1 236 1 236 1.33e-125 355
MS.gene78721.t1 MTR_2g085250 72.458 236 65 0 1 236 1 236 4.70e-125 354
MS.gene78721.t1 MTR_5g055100 72.034 236 66 0 1 236 1 236 2.18e-124 352
MS.gene78721.t1 MTR_5g045560 75.546 229 56 0 1 229 1 229 3.09e-123 349
MS.gene78721.t1 MTR_8g043650 66.094 233 79 0 1 233 1 233 4.15e-112 321
MS.gene78721.t1 MTR_1g075600 69.333 225 69 0 1 225 1 225 1.63e-110 317
MS.gene78721.t1 MTR_1g077360 67.111 225 74 0 1 225 1 225 1.10e-106 308
MS.gene78721.t1 MTR_1g105910 63.556 225 82 0 1 225 1 225 9.74e-104 300
MS.gene78721.t1 MTR_1g105920 66.667 222 74 0 1 222 1 222 4.65e-103 298
MS.gene78721.t1 MTR_2g030740 65.766 222 76 0 1 222 1 222 7.74e-102 295
MS.gene78721.t1 MTR_1g012570 64.865 222 78 0 1 222 1 222 2.41e-97 284
MS.gene78721.t1 MTR_0121s0080 60.086 233 92 1 1 233 1 232 8.98e-96 280
MS.gene78721.t1 MTR_3g052920 63.014 219 81 0 1 219 1 219 6.07e-95 278
MS.gene78721.t1 MTR_3g030770 61.277 235 73 3 1 225 1 227 1.04e-94 277
MS.gene78721.t1 MTR_1g108510 61.277 235 73 3 1 225 1 227 1.90e-94 276
MS.gene78721.t1 MTR_2g093190 61.702 235 72 3 1 225 1 227 2.99e-93 273
MS.gene78721.t1 MTR_1g105905 59.259 216 88 0 18 233 1 216 2.05e-90 266
MS.gene78721.t1 MTR_1g108580 57.447 235 82 3 1 225 1 227 8.27e-86 254
MS.gene78721.t1 MTR_3g052870 58.447 219 72 2 1 219 1 200 3.87e-82 244
MS.gene78721.t1 MTR_1g106070 65.385 182 63 0 1 182 1 182 8.46e-81 240
MS.gene78721.t1 MTR_7g062350 55.963 218 95 1 19 236 31 247 1.97e-80 241
MS.gene78721.t1 MTR_1g075570 57.303 178 62 1 18 195 1 164 1.08e-56 178
MS.gene78721.t1 MTR_3g080940 44.724 199 106 1 1 195 1 199 2.25e-53 171
MS.gene78721.t1 MTR_0121s0100 65.116 129 45 0 1 129 1 129 9.82e-52 164
MS.gene78721.t1 MTR_3g030780 62.097 124 47 0 1 124 1 124 1.55e-48 156
MS.gene78721.t1 MTR_3g067910 62.963 108 40 0 21 128 2 109 9.85e-41 135
MS.gene78721.t1 MTR_8g086290 38.415 164 97 2 5 168 8 167 2.11e-31 114
MS.gene78721.t1 MTR_2g105290 36.095 169 102 2 5 172 8 171 3.78e-30 110
MS.gene78721.t1 MTR_7g028448 40.645 155 80 2 5 159 8 150 2.66e-29 108
MS.gene78721.t1 MTR_4g036915 40.645 155 80 2 5 159 8 150 2.66e-29 108
MS.gene78721.t1 MTR_3g067875 87.500 56 7 0 18 73 1 56 3.89e-28 102
MS.gene78721.t1 MTR_8g051580 41.985 131 64 3 9 128 2 131 9.31e-25 97.1
MS.gene78721.t1 MTR_1g047550 56.338 71 31 0 9 79 2 72 8.26e-24 94.4
MS.gene78721.t1 MTR_8g079502 56.338 71 31 0 9 79 2 72 1.20e-23 94.0
MS.gene78721.t1 MTR_3g067870 70.312 64 19 0 16 79 83 146 1.68e-23 92.8
MS.gene78721.t1 MTR_1g063160 43.396 106 56 2 9 111 2 106 7.13e-23 92.0
MS.gene78721.t1 MTR_4g127140 35.165 182 102 3 5 175 8 184 1.26e-22 91.7
MS.gene78721.t1 MTR_1g108500 48.673 113 35 2 7 117 93 184 4.07e-22 93.2
MS.gene78721.t1 MTR_1g054265 55.072 69 31 0 9 77 2 70 5.24e-22 89.4
MS.gene78721.t1 MTR_4g131030 52.113 71 34 0 9 79 2 72 1.38e-21 89.4
MS.gene78721.t1 MTR_3g067915 49.462 93 47 0 33 125 3 95 2.05e-21 85.5
MS.gene78721.t1 MTR_8g046350 49.351 77 39 0 9 85 2 78 5.06e-21 86.7
MS.gene78721.t1 MTR_4g094632 41.509 106 60 1 9 114 2 105 9.56e-20 83.2
MS.gene78721.t1 MTR_4g094638 53.623 69 32 0 9 77 2 70 2.55e-18 79.7
MS.gene78721.t1 MTR_4g093970 44.660 103 49 4 10 104 29 131 1.50e-17 79.3
MS.gene78721.t1 MTR_0003s0590 43.564 101 42 2 9 94 2 102 2.92e-17 78.6
MS.gene78721.t1 MTR_5g066180 50.000 68 34 0 9 76 2 69 3.72e-17 77.8
MS.gene78721.t1 MTR_8g022970 34.641 153 97 2 8 159 17 167 5.07e-17 76.6
MS.gene78721.t1 MTR_3g005530 50.000 68 34 0 9 76 2 69 5.42e-17 77.4
MS.gene78721.t1 MTR_3g452380 45.946 74 40 0 3 76 11 84 1.63e-16 76.3
MS.gene78721.t1 MTR_8g033270 49.367 79 39 1 9 86 2 80 1.65e-16 76.6
MS.gene78721.t1 MTR_4g102530 49.296 71 36 0 10 80 3 73 2.68e-16 75.1
MS.gene78721.t1 MTR_7g075870 53.731 67 31 0 10 76 3 69 2.94e-16 75.1
MS.gene78721.t1 MTR_3g437790 33.793 145 75 5 26 159 30 164 3.60e-16 74.3
MS.gene78721.t1 MTR_1g053070 52.941 68 32 0 9 76 2 69 5.85e-16 75.1
MS.gene78721.t1 MTR_8g033220 50.725 69 34 0 10 78 3 71 6.61e-16 74.3
MS.gene78721.t1 MTR_8g033220 50.725 69 34 0 10 78 3 71 7.14e-16 74.3
MS.gene78721.t1 MTR_4g109830 31.977 172 91 6 9 175 2 152 9.34e-16 74.3
MS.gene78721.t1 MTR_5g032150 48.529 68 35 0 9 76 2 69 1.23e-15 73.6
MS.gene78721.t1 MTR_8g087860 48.529 68 35 0 9 76 18 85 1.31e-15 73.9
MS.gene78721.t1 MTR_5g032520 48.529 68 35 0 9 76 2 69 1.76e-15 73.2
MS.gene78721.t1 MTR_2g009890 48.529 68 35 0 9 76 2 69 2.47e-15 73.6
MS.gene78721.t1 MTR_5g031000 48.529 68 35 0 9 76 2 69 2.91e-15 72.8
MS.gene78721.t1 MTR_5g031000 48.529 68 35 0 9 76 2 69 3.13e-15 72.4
MS.gene78721.t1 MTR_2g017865 48.529 68 35 0 9 76 17 84 3.78e-15 72.8
MS.gene78721.t1 MTR_7g075870 52.941 68 31 1 10 76 3 70 5.31e-15 71.6
MS.gene78721.t1 MTR_7g016630 46.377 69 36 1 9 76 2 70 8.01e-15 72.0
MS.gene78721.t1 MTR_6g464720 49.275 69 34 1 9 76 2 70 1.29e-14 71.2
MS.gene78721.t1 MTR_1g101970 50.000 68 34 0 9 76 2 69 1.82e-14 69.7
MS.gene78721.t1 MTR_3g109930 36.765 136 78 4 27 159 20 150 2.38e-14 69.3
MS.gene78721.t1 MTR_5g066960 50.877 57 28 0 9 65 2 58 3.31e-14 65.5
MS.gene78721.t1 MTR_6g015975 49.275 69 34 1 9 76 2 70 3.98e-14 70.1
MS.gene78721.t1 MTR_7g016600 49.275 69 34 1 9 76 2 70 4.61e-14 69.7
MS.gene78721.t1 MTR_3g088615 44.286 70 37 1 9 76 2 71 5.29e-14 68.2
MS.gene78721.t1 MTR_4g084740 47.887 71 36 1 9 78 2 72 6.38e-14 70.5
MS.gene78721.t1 MTR_3g102570 47.887 71 36 1 9 78 2 72 1.06e-13 69.7
MS.gene78721.t1 MTR_1g029670 44.286 70 37 1 9 76 2 71 1.16e-13 67.4
MS.gene78721.t1 MTR_1g038300 32.051 156 72 6 9 130 2 157 1.25e-13 68.2
MS.gene78721.t1 MTR_8g066260 44.928 69 37 1 9 76 2 70 1.43e-13 68.2
MS.gene78721.t1 MTR_7g075850 43.902 82 43 2 9 87 2 83 2.54e-13 67.8
MS.gene78721.t1 MTR_2g461710 51.786 56 27 0 9 64 2 57 2.57e-13 63.2
MS.gene78721.t1 MTR_5g046790 42.169 83 42 2 9 85 2 84 2.63e-13 67.0
MS.gene78721.t1 MTR_5g046870 47.826 69 35 1 9 76 2 70 3.98e-13 64.3
MS.gene78721.t1 MTR_5g021270 47.143 70 35 1 9 76 2 71 5.76e-13 66.6
MS.gene78721.t1 MTR_5g021270 47.143 70 35 1 9 76 2 71 5.95e-13 66.2
MS.gene78721.t1 MTR_4g109810 51.786 56 27 0 9 64 2 57 1.49e-12 65.5
MS.gene78721.t1 MTR_8g097090 46.377 69 36 1 9 76 2 70 1.52e-12 65.5
MS.gene78721.t1 MTR_3g084980 44.928 69 37 1 9 76 2 70 1.97e-12 65.1
MS.gene78721.t1 MTR_4g093030 48.387 62 32 0 9 70 2 63 2.04e-12 63.5
MS.gene78721.t1 MTR_3g113030 26.818 220 134 7 9 226 2 196 3.20e-12 64.3
MS.gene78721.t1 MTR_4g051538 40.449 89 53 0 1 89 1 89 3.85e-11 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene78721.t1 AT5G60440 52.695 167 76 2 5 168 3 169 1.73e-53 174
MS.gene78721.t1 AT2G24840 49.068 161 71 3 9 163 63 218 5.20e-43 146
MS.gene78721.t1 AT1G65360 39.914 233 123 6 5 230 3 225 2.17e-39 136
MS.gene78721.t1 AT1G01530 46.584 161 81 4 4 162 2 159 4.79e-38 133
MS.gene78721.t1 AT4G36590 45.732 164 79 4 5 160 3 164 5.79e-36 127
MS.gene78721.t1 AT3G04100 34.969 163 100 4 2 159 7 168 1.51e-24 97.1
MS.gene78721.t1 AT2G34440 33.951 162 105 2 9 170 2 161 3.49e-23 92.4
MS.gene78721.t1 AT3G66656 41.176 119 66 1 9 123 2 120 1.90e-22 90.9
MS.gene78721.t1 AT1G72350 31.746 189 93 4 9 196 43 196 5.86e-22 90.9
MS.gene78721.t1 AT2G45660 55.882 68 30 0 10 77 3 70 1.47e-18 80.1
MS.gene78721.t1 AT2G45660 55.882 68 30 0 10 77 3 70 3.23e-18 80.5
MS.gene78721.t1 AT4G22950 53.731 67 31 0 10 76 3 69 3.85e-18 79.3
MS.gene78721.t1 AT5G51870 55.556 72 32 0 5 76 21 92 5.90e-18 79.3
MS.gene78721.t1 AT4G22950 53.731 67 31 0 10 76 3 69 1.08e-17 79.3
MS.gene78721.t1 AT4G22950 53.731 67 31 0 10 76 3 69 1.08e-17 79.3
MS.gene78721.t1 AT4G37940 54.412 68 31 0 9 76 2 69 1.70e-17 79.0
MS.gene78721.t1 AT4G37940 54.412 68 31 0 9 76 2 69 1.73e-17 78.6
MS.gene78721.t1 AT2G45650 54.412 68 31 0 9 76 2 69 1.96e-17 79.0
MS.gene78721.t1 AT4G37940 54.412 68 31 0 9 76 2 69 2.15e-17 77.4
MS.gene78721.t1 AT5G51870 56.716 67 29 0 10 76 3 69 2.30e-17 78.2
MS.gene78721.t1 AT5G51870 56.716 67 29 0 10 76 3 69 2.38e-17 77.0
MS.gene78721.t1 AT5G51870 54.054 74 32 1 3 76 8 79 2.80e-17 78.2
MS.gene78721.t1 AT5G51870 56.716 67 29 0 10 76 3 69 4.27e-17 77.4
MS.gene78721.t1 AT3G57230 50.000 68 34 0 9 76 2 69 6.82e-17 75.1
MS.gene78721.t1 AT3G57390 54.412 68 31 0 9 76 2 69 8.09e-17 77.0
MS.gene78721.t1 AT2G22540 51.471 68 33 0 9 76 2 69 1.26e-16 76.6
MS.gene78721.t1 AT2G22540 51.471 68 33 0 9 76 2 69 1.26e-16 76.6
MS.gene78721.t1 AT4G09960 48.529 68 35 0 9 76 2 69 1.39e-16 76.3
MS.gene78721.t1 AT5G62165 52.239 67 32 0 10 76 3 69 1.39e-16 73.2
MS.gene78721.t1 AT4G09960 48.529 68 35 0 9 76 2 69 1.46e-16 76.3
MS.gene78721.t1 AT2G22630 52.941 68 32 0 9 76 2 69 1.48e-16 76.3
MS.gene78721.t1 AT2G22630 52.941 68 32 0 9 76 2 69 1.48e-16 76.3
MS.gene78721.t1 AT4G09960 48.529 68 35 0 9 76 3 70 1.55e-16 76.3
MS.gene78721.t1 AT1G28460 29.480 173 112 4 5 170 4 173 1.76e-16 75.1
MS.gene78721.t1 AT3G57390 54.412 68 31 0 9 76 2 69 1.78e-16 76.6
MS.gene78721.t1 AT5G62165 52.239 67 32 0 10 76 3 69 1.81e-16 74.3
MS.gene78721.t1 AT5G62165 52.239 67 32 0 10 76 3 69 1.81e-16 74.3
MS.gene78721.t1 AT5G62165 52.239 67 32 0 10 76 3 69 1.81e-16 74.3
MS.gene78721.t1 AT3G57230 50.000 68 34 0 9 76 2 69 1.89e-16 76.3
MS.gene78721.t1 AT3G57230 50.000 68 34 0 9 76 2 69 1.89e-16 76.3
MS.gene78721.t1 AT4G09960 48.529 68 35 0 9 76 12 79 1.97e-16 76.3
MS.gene78721.t1 AT5G10140 50.725 69 33 1 9 76 2 70 2.28e-16 74.7
MS.gene78721.t1 AT5G13790 52.941 68 32 0 9 76 2 69 2.29e-16 76.6
MS.gene78721.t1 AT5G62165 52.239 67 32 0 10 76 3 69 2.37e-16 73.9
MS.gene78721.t1 AT5G62165 52.239 67 32 0 10 76 3 69 2.37e-16 73.9
MS.gene78721.t1 AT5G62165 52.239 67 32 0 10 76 3 69 2.37e-16 73.9
MS.gene78721.t1 AT5G62165 52.239 67 32 0 10 76 3 69 2.37e-16 73.9
MS.gene78721.t1 AT5G62165 52.239 67 32 0 10 76 3 69 2.37e-16 73.9
MS.gene78721.t1 AT5G10140 50.725 69 33 1 9 76 2 70 2.42e-16 74.3
MS.gene78721.t1 AT5G13790 52.941 68 32 0 9 76 2 69 2.43e-16 76.6
MS.gene78721.t1 AT5G10140 50.725 69 33 1 9 76 2 70 2.60e-16 75.1
MS.gene78721.t1 AT5G62165 52.239 67 32 0 10 76 3 69 3.16e-16 74.7
MS.gene78721.t1 AT5G62165 52.239 67 32 0 10 76 3 69 3.16e-16 74.7
MS.gene78721.t1 AT4G09960 48.529 68 35 0 9 76 28 95 3.58e-16 75.9
MS.gene78721.t1 AT5G62165 52.239 67 32 0 10 76 3 69 3.84e-16 74.7
MS.gene78721.t1 AT5G62165 52.239 67 32 0 10 76 3 69 3.84e-16 74.7
MS.gene78721.t1 AT5G62165 52.239 67 32 0 10 76 3 69 3.84e-16 74.7
MS.gene78721.t1 AT4G24540 51.471 68 33 0 9 76 2 69 4.12e-16 75.1
MS.gene78721.t1 AT3G54340 31.847 157 74 4 9 133 2 157 4.76e-16 75.1
MS.gene78721.t1 AT4G18960 41.748 103 48 2 2 103 11 102 5.44e-16 75.1
MS.gene78721.t1 AT5G10140 50.725 69 33 1 9 76 2 70 5.58e-16 73.9
MS.gene78721.t1 AT4G09960 48.529 68 35 0 9 76 97 164 8.05e-16 75.9
MS.gene78721.t1 AT1G29962 45.946 74 40 0 5 78 4 77 8.60e-16 73.2
MS.gene78721.t1 AT5G51860 53.731 67 31 0 10 76 3 69 9.46e-16 73.6
MS.gene78721.t1 AT5G51860 53.731 67 31 0 10 76 3 69 1.37e-15 73.2
MS.gene78721.t1 AT2G42830 48.529 68 35 0 9 76 17 84 1.55e-15 73.9
MS.gene78721.t1 AT2G42830 48.529 68 35 0 9 76 17 84 1.58e-15 73.9
MS.gene78721.t1 AT3G58780 47.887 71 37 0 6 76 14 84 1.97e-15 73.6
MS.gene78721.t1 AT3G58780 47.887 71 37 0 6 76 20 90 2.09e-15 73.6
MS.gene78721.t1 AT3G61120 51.471 68 33 0 9 76 2 69 2.19e-15 73.6
MS.gene78721.t1 AT4G11880 52.941 68 31 1 10 76 3 70 3.43e-15 71.6
MS.gene78721.t1 AT4G11880 52.941 68 31 1 10 76 3 70 3.43e-15 71.6
MS.gene78721.t1 AT5G65070 32.447 188 100 8 9 173 2 185 3.90e-15 72.0
MS.gene78721.t1 AT5G23260 48.000 75 37 1 5 77 14 88 3.91e-15 73.2
MS.gene78721.t1 AT5G23260 48.000 75 37 1 5 77 14 88 3.95e-15 73.2
MS.gene78721.t1 AT3G58780 47.887 71 37 0 6 76 14 84 5.19e-15 72.8
MS.gene78721.t1 AT4G11880 52.941 68 31 1 10 76 3 70 5.55e-15 72.0
MS.gene78721.t1 AT4G11880 52.941 68 31 1 10 76 3 70 5.55e-15 72.0
MS.gene78721.t1 AT1G17310 57.143 70 28 1 8 77 47 114 7.13e-15 71.6
MS.gene78721.t1 AT3G30260 46.377 69 36 1 9 76 2 70 7.37e-15 72.0
MS.gene78721.t1 AT1G17310 32.143 196 91 5 8 198 58 216 9.26e-15 71.2
MS.gene78721.t1 AT5G23260 49.296 71 34 1 9 77 2 72 1.07e-14 71.2
MS.gene78721.t1 AT5G23260 49.296 71 34 1 9 77 2 72 1.12e-14 71.6
MS.gene78721.t1 AT2G14210 47.826 69 35 1 9 76 2 70 1.30e-14 71.2
MS.gene78721.t1 AT2G14210 47.826 69 35 1 9 76 2 70 1.56e-14 70.9
MS.gene78721.t1 AT1G77950 46.479 71 37 1 9 78 2 72 1.59e-14 71.2
MS.gene78721.t1 AT1G77950 46.479 71 37 1 9 78 2 72 1.59e-14 71.2
MS.gene78721.t1 AT1G77950 46.479 71 37 1 9 78 2 72 1.59e-14 71.2
MS.gene78721.t1 AT1G77950 46.479 71 37 1 9 78 2 72 1.59e-14 71.2
MS.gene78721.t1 AT1G77980 47.887 71 36 1 9 78 2 72 2.10e-14 71.6
MS.gene78721.t1 AT5G65050 46.377 69 36 1 9 76 2 70 3.05e-14 68.9
MS.gene78721.t1 AT2G22540 57.143 56 24 0 9 64 2 57 3.16e-14 70.1
MS.gene78721.t1 AT5G65070 43.750 80 41 2 9 87 2 78 3.97e-14 69.3
MS.gene78721.t1 AT5G65070 43.750 80 41 2 9 87 2 78 4.02e-14 67.8
MS.gene78721.t1 AT5G65050 46.377 69 36 1 9 76 2 70 5.80e-14 68.6
MS.gene78721.t1 AT1G22130 42.697 89 48 2 9 96 2 88 5.82e-14 70.5
MS.gene78721.t1 AT5G65070 39.583 96 50 3 9 99 2 94 6.75e-14 68.9
MS.gene78721.t1 AT5G65050 46.377 69 36 1 9 76 2 70 6.78e-14 68.2
MS.gene78721.t1 AT5G65050 46.377 69 36 1 9 76 2 70 7.09e-14 68.2
MS.gene78721.t1 AT5G15800 49.275 69 34 1 9 76 2 70 7.31e-14 69.3
MS.gene78721.t1 AT5G60910 46.377 69 36 1 9 76 2 70 7.89e-14 68.9
MS.gene78721.t1 AT1G26310 46.377 69 36 1 9 76 2 70 8.46e-14 69.3
MS.gene78721.t1 AT5G15800 49.275 69 34 1 9 76 2 70 1.21e-13 68.9
MS.gene78721.t1 AT5G20240 45.714 70 36 1 9 76 2 71 1.72e-13 66.2
MS.gene78721.t1 AT1G47760 41.791 67 39 0 9 75 2 68 1.81e-13 67.0
MS.gene78721.t1 AT5G20240 45.714 70 36 1 9 76 2 71 2.17e-13 67.4
MS.gene78721.t1 AT1G69120 43.478 69 38 1 9 76 2 70 2.53e-13 67.4
MS.gene78721.t1 AT5G65060 46.377 69 36 1 9 76 2 70 2.55e-13 67.0
MS.gene78721.t1 AT5G65060 46.377 69 36 1 9 76 2 70 2.72e-13 66.6
MS.gene78721.t1 AT5G65060 46.377 69 36 1 9 76 2 70 3.30e-13 66.6
MS.gene78721.t1 AT1G69120 43.478 69 38 1 9 76 2 70 5.00e-13 67.0
MS.gene78721.t1 AT4G37435 39.773 88 48 2 9 91 2 89 6.09e-13 65.5
MS.gene78721.t1 AT3G58780 49.180 61 31 0 6 66 14 74 6.51e-13 66.6
MS.gene78721.t1 AT1G28450 41.892 74 43 0 5 78 4 77 7.48e-13 65.5
MS.gene78721.t1 AT3G58780 49.180 61 31 0 6 66 14 74 1.06e-12 66.2
MS.gene78721.t1 AT5G65070 50.877 57 28 0 9 65 2 58 1.24e-12 65.5
MS.gene78721.t1 AT2G03710 51.786 56 27 0 9 64 2 57 1.34e-12 64.7
MS.gene78721.t1 AT1G24260 46.377 69 36 1 9 76 2 70 1.44e-12 65.5
MS.gene78721.t1 AT1G24260 46.377 69 36 1 9 76 2 70 1.44e-12 65.5
MS.gene78721.t1 AT1G24260 46.377 69 36 1 9 76 2 70 1.49e-12 65.5
MS.gene78721.t1 AT3G02310 44.928 69 37 1 9 76 2 70 1.51e-12 64.7
MS.gene78721.t1 AT1G71692 44.286 70 38 1 9 77 2 71 1.63e-12 65.1
MS.gene78721.t1 AT3G02310 44.928 69 37 1 9 76 2 70 2.63e-12 65.1
MS.gene78721.t1 AT2G03710 51.786 56 27 0 9 64 2 57 2.75e-12 65.1
MS.gene78721.t1 AT2G03710 51.786 56 27 0 9 64 2 57 2.92e-12 65.1
MS.gene78721.t1 AT5G65080 41.772 79 42 2 9 86 9 84 1.01e-11 62.4
MS.gene78721.t1 AT5G65080 50.000 54 27 0 9 62 9 62 2.05e-11 61.6
MS.gene78721.t1 AT5G49420 39.744 78 43 1 5 78 3 80 5.50e-11 62.0
MS.gene78721.t1 AT5G49490 35.238 105 61 3 5 103 41 144 6.59e-11 61.2

Find 52 sgRNAs with CRISPR-Local

Find 64 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTATGACTATTTCAACATT+TGG 0.272727 5.4:-42381159 None:intergenic
TTTGTTTGGCTTCAACAATA+TGG 0.287971 5.4:+42381614 MS.gene78721:CDS
AGAAGAATCAAGCTCAGTTT+TGG 0.347534 5.4:+42381343 MS.gene78721:CDS
CTATGACTATTTCAACATTT+GGG 0.358955 5.4:-42381158 None:intergenic
ATTGAATCTTCTTGAGGATC+TGG 0.388433 5.4:-42381549 None:intergenic
TGGTGGAATTGTCCTATTGA+TGG 0.405545 5.4:+42381363 MS.gene78721:CDS
ATGTTGCAACCACATTTGTT+TGG 0.408052 5.4:+42381600 MS.gene78721:CDS
ATGACATCATGAAAATCATT+CGG 0.408528 5.4:+42381214 MS.gene78721:CDS
TTGTTTGGCTTCAACAATAT+GGG 0.410403 5.4:+42381615 MS.gene78721:CDS
AGTGAGCTTTGCACTCTTTG+TGG 0.435768 5.4:+42381078 MS.gene78721:CDS
TGTTGCGCAACATGCTGATA+AGG 0.445562 5.4:+42381443 MS.gene78721:CDS
GCTTCGAGAAAGTCACTTGT+AGG 0.449108 5.4:-42381029 None:intergenic
TGACATCATGAAAATCATTC+GGG 0.467021 5.4:+42381215 MS.gene78721:CDS
TCCTATTGATGGGATGAATA+TGG 0.475109 5.4:+42381374 MS.gene78721:CDS
AACAAATGTGGTTGCAACAT+AGG 0.478237 5.4:-42381597 None:intergenic
ACCATATTCATCCCATCAAT+AGG 0.487018 5.4:-42381375 None:intergenic
CCTTCTTGAATGATTCAAGT+TGG 0.496013 5.4:-42381398 None:intergenic
GGGTTCTGAAGAAATTCTGC+TGG 0.496408 5.4:-42381576 None:intergenic
AATCTTCTTGAGGATCTGGC+TGG 0.497439 5.4:-42381545 None:intergenic
TATCTTCTCACCTAGTGAAA+AGG 0.506975 5.4:+42381119 MS.gene78721:CDS
GGTGGAATTGTCCTATTGAT+GGG 0.509530 5.4:+42381364 MS.gene78721:CDS
ACAAATGTGGTTGCAACATA+GGG 0.521813 5.4:-42381596 None:intergenic
CAAGGTGGACATGGTCCCCA+TGG 0.523876 5.4:+42381642 MS.gene78721:CDS
TGATGTATTGACTCATATCA+AGG 0.531389 5.4:+42381269 MS.gene78721:CDS
GGAAAGATTGAATCTTCTTG+AGG 0.536124 5.4:-42381555 None:intergenic
GCTGGCTTAGTTCATTCCCA+CGG 0.543944 5.4:-42381314 None:intergenic
ATCATTCAAGAAGGCTCTGA+AGG 0.547604 5.4:+42381407 MS.gene78721:CDS
CTTTCTCGAAGCGCCGTAGT+GGG 0.553366 5.4:+42381040 MS.gene78721:CDS
ATGGGAGGACAAGGTGGACA+TGG 0.555996 5.4:+42381633 MS.gene78721:CDS
GCTCGGACACAATGGTGTTA+CGG 0.556895 5.4:-42381242 None:intergenic
ACTTTCTCGAAGCGCCGTAG+TGG 0.571963 5.4:+42381039 MS.gene78721:CDS
AGTCAATACATCATTGAGCT+CGG 0.593521 5.4:-42381259 None:intergenic
AACAATATGGGAGGACAAGG+TGG 0.597364 5.4:+42381627 MS.gene78721:CDS
GCTGATAAGGTTCAAATGCA+AGG 0.600026 5.4:+42381456 MS.gene78721:CDS
TGGGAATGAACTAAGCCAGC+CGG 0.600822 5.4:+42381317 MS.gene78721:CDS
CCAACTTGAATCATTCAAGA+AGG 0.607259 5.4:+42381398 MS.gene78721:CDS
TTCAACAATATGGGAGGACA+AGG 0.607830 5.4:+42381624 MS.gene78721:CDS
GATTAGATCAAGAAATCCCA+TGG 0.608568 5.4:-42381659 None:intergenic
TTTGGCTTCAACAATATGGG+AGG 0.620361 5.4:+42381618 MS.gene78721:CDS
ATCATTGAGCTCGGACACAA+TGG 0.621229 5.4:-42381250 None:intergenic
AAGGTGGACATGGTCCCCAT+GGG 0.621524 5.4:+42381643 MS.gene78721:CDS
GGATCTGGCTGGTTCTCAAG+AGG 0.622631 5.4:-42381534 None:intergenic
CTTTCTTGAAGAGCCCACTA+CGG 0.627906 5.4:-42381053 None:intergenic
GCGGAAAGAAAACTCGAGGT+CGG 0.635901 5.4:+42380968 MS.gene78721:CDS
ATTAGATCAAGAAATCCCAT+GGG 0.651611 5.4:-42381658 None:intergenic
CATAGATCGTTATCTCTCTG+AGG 0.659651 5.4:+42381176 MS.gene78721:CDS
TAGACATCGAAAAGAACCGT+GGG 0.671283 5.4:+42381298 MS.gene78721:CDS
TCGAGCGGAAAGAAAACTCG+AGG 0.680063 5.4:+42380964 MS.gene78721:CDS
TTGTTGAAGCCAAACAAATG+TGG 0.689285 5.4:-42381609 None:intergenic
TGTGCTTCAGCCATGTCGAG+CGG 0.709182 5.4:+42380949 None:intergenic
CTAGACATCGAAAAGAACCG+TGG 0.721163 5.4:+42381297 MS.gene78721:CDS
TTAGATCAAGAAATCCCATG+GGG 0.786091 5.4:-42381657 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! ATGACATCATGAAAATCATT+CGG + chr5.4:42381214-42381233 MS.gene78721:CDS 25.0%
! CTATGACTATTTCAACATTT+GGG - chr5.4:42381161-42381180 None:intergenic 25.0%
! TCTATGACTATTTCAACATT+TGG - chr5.4:42381162-42381181 None:intergenic 25.0%
!! AATGAAAATACCTTTTCACT+AGG - chr5.4:42381132-42381151 None:intergenic 25.0%
!! TTTCATGATGTCATCATTTT+GGG - chr5.4:42381208-42381227 None:intergenic 25.0%
!! TTTTCATGATGTCATCATTT+TGG - chr5.4:42381209-42381228 None:intergenic 25.0%
!!! AGTGAAAAGGTATTTTCATT+TGG + chr5.4:42381132-42381151 MS.gene78721:CDS 25.0%
ATCTCCTTCAAAAACTTGAA+GGG - chr5.4:42381496-42381515 None:intergenic 30.0%
TGACATCATGAAAATCATTC+GGG + chr5.4:42381215-42381234 MS.gene78721:CDS 30.0%
! TTCATGATGTCATCATTTTG+GGG - chr5.4:42381207-42381226 None:intergenic 30.0%
! TTGTTTGGCTTCAACAATAT+GGG + chr5.4:42381615-42381634 MS.gene78721:CDS 30.0%
! TTTGTTTGGCTTCAACAATA+TGG + chr5.4:42381614-42381633 MS.gene78721:CDS 30.0%
!! TGATGTATTGACTCATATCA+AGG + chr5.4:42381269-42381288 MS.gene78721:CDS 30.0%
AACAAATGTGGTTGCAACAT+AGG - chr5.4:42381600-42381619 None:intergenic 35.0%
ACAAATGTGGTTGCAACATA+GGG - chr5.4:42381599-42381618 None:intergenic 35.0%
ACCATATTCATCCCATCAAT+AGG - chr5.4:42381378-42381397 None:intergenic 35.0%
AGTCAATACATCATTGAGCT+CGG - chr5.4:42381262-42381281 None:intergenic 35.0%
ATGTTGCAACCACATTTGTT+TGG + chr5.4:42381600-42381619 MS.gene78721:CDS 35.0%
ATTGAATCTTCTTGAGGATC+TGG - chr5.4:42381552-42381571 None:intergenic 35.0%
CATCTCCTTCAAAAACTTGA+AGG - chr5.4:42381497-42381516 None:intergenic 35.0%
CCAACTTGAATCATTCAAGA+AGG + chr5.4:42381398-42381417 MS.gene78721:CDS 35.0%
CCTTCTTGAATGATTCAAGT+TGG - chr5.4:42381401-42381420 None:intergenic 35.0%
GGAAAGATTGAATCTTCTTG+AGG - chr5.4:42381558-42381577 None:intergenic 35.0%
TATCTTCTCACCTAGTGAAA+AGG + chr5.4:42381119-42381138 MS.gene78721:CDS 35.0%
TCCTATTGATGGGATGAATA+TGG + chr5.4:42381374-42381393 MS.gene78721:CDS 35.0%
TCTCCTTCAAAAACTTGAAG+GGG - chr5.4:42381495-42381514 None:intergenic 35.0%
TTCAAAAACTTGAAGGGGTT+GGG - chr5.4:42381490-42381509 None:intergenic 35.0%
TTGTTGAAGCCAAACAAATG+TGG - chr5.4:42381612-42381631 None:intergenic 35.0%
! AGAAGAATCAAGCTCAGTTT+TGG + chr5.4:42381343-42381362 MS.gene78721:CDS 35.0%
! TGAGCTTGATTCTTCTTTTC+CGG - chr5.4:42381339-42381358 None:intergenic 35.0%
!! CTTCAAGTTTTTGAAGGAGA+TGG + chr5.4:42381495-42381514 MS.gene78721:CDS 35.0%
CATAGATCGTTATCTCTCTG+AGG + chr5.4:42381176-42381195 MS.gene78721:CDS 40.0%
CTTCAAAAACTTGAAGGGGT+TGG - chr5.4:42381491-42381510 None:intergenic 40.0%
GCTGATAAGGTTCAAATGCA+AGG + chr5.4:42381456-42381475 MS.gene78721:CDS 40.0%
GGTGGAATTGTCCTATTGAT+GGG + chr5.4:42381364-42381383 MS.gene78721:CDS 40.0%
TAGACATCGAAAAGAACCGT+GGG + chr5.4:42381298-42381317 MS.gene78721:CDS 40.0%
TGGTGGAATTGTCCTATTGA+TGG + chr5.4:42381363-42381382 MS.gene78721:CDS 40.0%
TTCAACAATATGGGAGGACA+AGG + chr5.4:42381624-42381643 MS.gene78721:CDS 40.0%
! ATCATTCAAGAAGGCTCTGA+AGG + chr5.4:42381407-42381426 MS.gene78721:CDS 40.0%
! TTTGGCTTCAACAATATGGG+AGG + chr5.4:42381618-42381637 MS.gene78721:CDS 40.0%
!! AGAATCAAGCTCAGTTTTGG+TGG + chr5.4:42381346-42381365 MS.gene78721:CDS 40.0%
!! CAACCCCTTCAAGTTTTTGA+AGG + chr5.4:42381489-42381508 MS.gene78721:CDS 40.0%
!!! TGATGTCATCATTTTGGGGT+AGG - chr5.4:42381203-42381222 None:intergenic 40.0%
AACAATATGGGAGGACAAGG+TGG + chr5.4:42381627-42381646 MS.gene78721:CDS 45.0%
AATCTTCTTGAGGATCTGGC+TGG - chr5.4:42381548-42381567 None:intergenic 45.0%
AGTGAGCTTTGCACTCTTTG+TGG + chr5.4:42381078-42381097 MS.gene78721:CDS 45.0%
ATCATTGAGCTCGGACACAA+TGG - chr5.4:42381253-42381272 None:intergenic 45.0%
CTAGACATCGAAAAGAACCG+TGG + chr5.4:42381297-42381316 MS.gene78721:CDS 45.0%
CTTTCTTGAAGAGCCCACTA+CGG - chr5.4:42381056-42381075 None:intergenic 45.0%
GCTTCGAGAAAGTCACTTGT+AGG - chr5.4:42381032-42381051 None:intergenic 45.0%
TGTTGCGCAACATGCTGATA+AGG + chr5.4:42381443-42381462 MS.gene78721:CDS 45.0%
! CTTGATTCTTCTTTTCCGGC+TGG - chr5.4:42381335-42381354 None:intergenic 45.0%
!! GGGTTCTGAAGAAATTCTGC+TGG - chr5.4:42381579-42381598 None:intergenic 45.0%
GCGGAAAGAAAACTCGAGGT+CGG + chr5.4:42380968-42380987 MS.gene78721:CDS 50.0%
TCGAGCGGAAAGAAAACTCG+AGG + chr5.4:42380964-42380983 MS.gene78721:CDS 50.0%
TGGGAATGAACTAAGCCAGC+CGG + chr5.4:42381317-42381336 MS.gene78721:CDS 50.0%
! GCTCGGACACAATGGTGTTA+CGG - chr5.4:42381245-42381264 None:intergenic 50.0%
! GCTGGCTTAGTTCATTCCCA+CGG - chr5.4:42381317-42381336 None:intergenic 50.0%
AAGGTGGACATGGTCCCCAT+GGG + chr5.4:42381643-42381662 MS.gene78721:CDS 55.0%
ATGGGAGGACAAGGTGGACA+TGG + chr5.4:42381633-42381652 MS.gene78721:CDS 55.0%
! GGATCTGGCTGGTTCTCAAG+AGG - chr5.4:42381537-42381556 None:intergenic 55.0%
!! ACTTTCTCGAAGCGCCGTAG+TGG + chr5.4:42381039-42381058 MS.gene78721:CDS 55.0%
!! CTTTCTCGAAGCGCCGTAGT+GGG + chr5.4:42381040-42381059 MS.gene78721:CDS 55.0%
CAAGGTGGACATGGTCCCCA+TGG + chr5.4:42381642-42381661 MS.gene78721:CDS 60.0%


Chromosome Type Strat End Strand Name
chr5.4 gene 42380961 42381674 42380961 ID=MS.gene78721
chr5.4 mRNA 42380961 42381674 42380961 ID=MS.gene78721.t1;Parent=MS.gene78721
chr5.4 exon 42380961 42381674 42380961 ID=MS.gene78721.t1.exon1;Parent=MS.gene78721.t1
chr5.4 CDS 42380961 42381674 42380961 ID=cds.MS.gene78721.t1;Parent=MS.gene78721.t1
Gene Sequence

>MS.gene78721

ATGTCGAGCGGAAAGAAAACTCGAGGTCGGCAAAAGATTGAGATGAAAAAGATGAGCGATGAAAGCAGCCTACAAGTGACTTTCTCGAAGCGCCGTAGTGGGCTCTTCAAGAAAGCTAGTGAGCTTTGCACTCTTTGTGGTGCATATGTTGCTCTAATTATCTTCTCACCTAGTGAAAAGGTATTTTCATTTGGTCACCCAAATGTTGAAATAGTCATAGATCGTTATCTCTCTGAGGTCCTACCCCAAAATGATGACATCATGAAAATCATTCGGGATGACCGTAACACCATTGTGTCCGAGCTCAATGATGTATTGACTCATATCAAGGATGAACTAGACATCGAAAAGAACCGTGGGAATGAACTAAGCCAGCCGGAAAAGAAGAATCAAGCTCAGTTTTGGTGGAATTGTCCTATTGATGGGATGAATATGGTCCAACTTGAATCATTCAAGAAGGCTCTGAAGGATCTTAAGAAACTTGTTGCGCAACATGCTGATAAGGTTCAAATGCAAGGTACTTCTACCCAACCCCTTCAAGTTTTTGAAGGAGATGGTTCATCATCTAACATGCCTCTTGAGAACCAGCCAGATCCTCAAGAAGATTCAATCTTTCCAGCAGAATTTCTTCAGAACCCTATGTTGCAACCACATTTGTTTGGCTTCAACAATATGGGAGGACAAGGTGGACATGGTCCCCATGGGATTTCTTGA
Protein sequence

>MS.gene78721.t1

MSSGKKTRGRQKIEMKKMSDESSLQVTFSKRRSGLFKKASELCTLCGAYVALIIFSPSEKVFSFGHPNVEIVIDRYLSEVLPQNDDIMKIIRDDRNTIVSELNDVLTHIKDELDIEKNRGNELSQPEKKNQAQFWWNCPIDGMNMVQLESFKKALKDLKKLVAQHADKVQMQGTSTQPLQVFEGDGSSSNMPLENQPDPQEDSIFPAEFLQNPMLQPHLFGFNNMGGQGGHGPHGIS