Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78844.t1 | XP_024627930.1 | 60.9 | 443 | 108 | 3 | 1 | 393 | 1 | 428 | 5.20E-136 | 494.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78844.t1 | A0A396I0R2 | 59.1 | 526 | 103 | 6 | 1 | 467 | 1 | 473 | 1.4e-135 | 492.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene05351 | MS.gene78844 | 0.836815 | 7.50E-57 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78844.t1 | MTR_2g102860 | 82.734 | 139 | 24 | 0 | 331 | 469 | 13 | 151 | 2.56e-68 | 216 |
| MS.gene78844.t1 | MTR_0029s0140 | 82.639 | 144 | 25 | 0 | 323 | 466 | 241 | 384 | 3.93e-68 | 223 |
| MS.gene78844.t1 | MTR_0029s0140 | 82.051 | 78 | 14 | 0 | 115 | 192 | 162 | 239 | 4.13e-42 | 154 |
| MS.gene78844.t1 | MTR_0029s0140 | 58.559 | 111 | 31 | 2 | 1 | 111 | 1 | 96 | 2.29e-29 | 119 |
| MS.gene78844.t1 | MTR_4g017750 | 82.517 | 143 | 21 | 1 | 324 | 466 | 110 | 248 | 2.38e-66 | 214 |
| MS.gene78844.t1 | MTR_2g020090 | 69.281 | 153 | 46 | 1 | 314 | 466 | 53 | 204 | 2.86e-66 | 213 |
| MS.gene78844.t1 | MTR_5g080310 | 79.195 | 149 | 27 | 1 | 325 | 473 | 122 | 266 | 6.84e-66 | 213 |
| MS.gene78844.t1 | MTR_3g058800 | 66.875 | 160 | 45 | 2 | 325 | 477 | 10 | 168 | 1.28e-64 | 206 |
| MS.gene78844.t1 | MTR_6g463490 | 82.906 | 117 | 20 | 0 | 353 | 469 | 3 | 119 | 4.28e-63 | 201 |
| MS.gene78844.t1 | MTR_1g023240 | 74.051 | 158 | 35 | 1 | 306 | 463 | 17 | 168 | 1.45e-62 | 204 |
| MS.gene78844.t1 | MTR_4g023110 | 72.388 | 134 | 36 | 1 | 323 | 456 | 7 | 139 | 1.89e-59 | 192 |
| MS.gene78844.t1 | MTR_8g027455 | 53.503 | 157 | 64 | 4 | 323 | 473 | 23 | 176 | 4.12e-41 | 152 |
| MS.gene78844.t1 | MTR_1g077650 | 65.385 | 104 | 35 | 1 | 324 | 427 | 46 | 148 | 8.24e-39 | 139 |
| MS.gene78844.t1 | MTR_7g035425 | 36.970 | 165 | 89 | 5 | 131 | 283 | 179 | 340 | 4.20e-23 | 100 |
| MS.gene78844.t1 | MTR_7g037680 | 29.858 | 211 | 116 | 5 | 236 | 445 | 17 | 196 | 5.56e-20 | 89.7 |
| MS.gene78844.t1 | MTR_5g053700 | 82.000 | 50 | 5 | 1 | 417 | 466 | 1 | 46 | 9.65e-19 | 80.5 |
| MS.gene78844.t1 | MTR_2g077640 | 29.032 | 217 | 110 | 7 | 193 | 405 | 34 | 210 | 2.04e-17 | 82.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 157 sgRNAs with CRISPR-Local
Find 287 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCGCTGGTTTAGGCTCTTTC+AGG | 0.183435 | 3.1:+3738283 | MS.gene78844:CDS |
| CATGATTGAGGGTTAGTCTT+AGG | 0.184506 | 3.1:-3740699 | None:intergenic |
| TGTGGGAGGGACCTTGAGCC+TGG | 0.232485 | 3.1:-3740891 | None:intergenic |
| CTGGCGTCAGCTCAGGCTGC+TGG | 0.280344 | 3.1:-3740735 | None:intergenic |
| TGATGAATTGGTTAAGTATT+GGG | 0.285226 | 3.1:+3738547 | MS.gene78844:CDS |
| CCCGCCTATCTTTGATGAAT+TGG | 0.292649 | 3.1:+3738535 | MS.gene78844:CDS |
| TATGGCACCATACCTCCTTA+TGG | 0.295998 | 3.1:+3737762 | MS.gene78844:CDS |
| TTGCCCTTGCTCTTTCCATT+AGG | 0.302043 | 3.1:-3737504 | None:intergenic |
| ATAACTGCTATCATCACTTT+TGG | 0.303053 | 3.1:+3738225 | MS.gene78844:CDS |
| TTGCTCTTTCCATTAGGTTT+CGG | 0.328125 | 3.1:-3737498 | None:intergenic |
| TAATGCAGACCAAGTGTTCT+TGG | 0.346146 | 3.1:+3738387 | MS.gene78844:intron |
| CCGGTTCTTCTTTGCTTTGT+CGG | 0.346522 | 3.1:-3738594 | None:intergenic |
| CTTGCCGAGGCTATTTCTAA+TGG | 0.350981 | 3.1:+3740550 | MS.gene78844:CDS |
| TCTTCTAGCCAGGGTTCACC+TGG | 0.361153 | 3.1:+3737636 | MS.gene78844:CDS |
| CCAGTACATCCTGGATATTA+TGG | 0.365206 | 3.1:+3737744 | MS.gene78844:CDS |
| CGCATCTCTGGCGTCAGCTC+AGG | 0.380128 | 3.1:-3740742 | None:intergenic |
| CGAGAATCTCTCGGATAATC+CGG | 0.382446 | 3.1:-3738047 | None:intergenic |
| ATGATTGAGGGTTAGTCTTA+GGG | 0.390145 | 3.1:-3740698 | None:intergenic |
| ATCTGCTGCATCTTCTAGCC+AGG | 0.397837 | 3.1:+3737626 | MS.gene78844:CDS |
| TTGTCTCCTCAAACCGCATA+CGG | 0.400455 | 3.1:-3738490 | None:intergenic |
| GAAGAACCGGGCGTCGGAAA+AGG | 0.413034 | 3.1:+3738607 | MS.gene78844:CDS |
| GCTATACGGTCTTGGTAACT+TGG | 0.413255 | 3.1:+3740642 | MS.gene78844:CDS |
| TTGATGAATTGGTTAAGTAT+TGG | 0.416006 | 3.1:+3738546 | MS.gene78844:CDS |
| TGAATAAGCTCCCGCATCTC+TGG | 0.423368 | 3.1:-3740754 | None:intergenic |
| CCGACAAAGCAAAGAAGAAC+CGG | 0.424122 | 3.1:+3738594 | MS.gene78844:CDS |
| ATGGCACCATACCTCCTTAT+GGG | 0.425132 | 3.1:+3737763 | MS.gene78844:CDS |
| CAGGAGCAGCTACACTAGCC+TGG | 0.433549 | 3.1:-3737665 | None:intergenic |
| AGGAGCAGCTGGCTCAGTTT+AGG | 0.434219 | 3.1:+3740863 | MS.gene78844:CDS |
| AATGCAGACCAAGTGTTCTT+GGG | 0.435174 | 3.1:+3738388 | MS.gene78844:intron |
| TTGCCGAGGCTATTTCTAAT+GGG | 0.436783 | 3.1:+3740551 | MS.gene78844:CDS |
| TGAAGAGGGTGGTGGAGAGC+TGG | 0.438701 | 3.1:+3738004 | MS.gene78844:CDS |
| TGAGCTGACGCCAGAGATGC+GGG | 0.441007 | 3.1:+3740744 | MS.gene78844:CDS |
| TCCTGCTCATCTACCGGATA+AGG | 0.441120 | 3.1:-3740946 | None:intergenic |
| GGAATGCCTCCGAAACCTAA+TGG | 0.442258 | 3.1:+3737489 | None:intergenic |
| CTCGTCGTCGATTCATCTTA+AGG | 0.445948 | 3.1:+3738066 | MS.gene78844:CDS |
| TGGCGTCAGCTCAGGCTGCT+GGG | 0.447507 | 3.1:-3740734 | None:intergenic |
| AAGAAGAAGGGAAAGCTATA+CGG | 0.450481 | 3.1:+3740628 | MS.gene78844:CDS |
| ACCGGATAAGGCTCAACATT+GGG | 0.453953 | 3.1:-3740934 | None:intergenic |
| TTAACCAATTCATCAAAGAT+AGG | 0.456166 | 3.1:-3738539 | None:intergenic |
| CCATAATATCCAGGATGTAC+TGG | 0.458343 | 3.1:-3737744 | None:intergenic |
| GATCTGATTGCTTCAGCAGC+CGG | 0.463673 | 3.1:-3738194 | None:intergenic |
| AGGACCCTTCACCATGATTG+AGG | 0.467659 | 3.1:-3740711 | None:intergenic |
| AGAAAGCGGCCGCATTGGAT+TGG | 0.468839 | 3.1:+3738512 | MS.gene78844:CDS |
| CACAGCTTCCCAAGAACACT+TGG | 0.469604 | 3.1:-3738396 | None:intergenic |
| AGACAAGAAAGCGGCCGCAT+TGG | 0.471247 | 3.1:+3738507 | MS.gene78844:CDS |
| AAGAGCCCGTATGCGGTTTG+AGG | 0.473397 | 3.1:+3738484 | MS.gene78844:CDS |
| GGGTTCACCTGGGTCCTCCC+AGG | 0.480027 | 3.1:+3737647 | MS.gene78844:CDS |
| AAGGGAAAGCTATACGGTCT+TGG | 0.480141 | 3.1:+3740634 | MS.gene78844:CDS |
| GCTCCTCATATGACCTTTGA+CGG | 0.484551 | 3.1:-3740846 | None:intergenic |
| TAGCACGCTCGTCGCAGTAT+TGG | 0.486252 | 3.1:-3738845 | None:intergenic |
| TTGATGCAACACTACCCTTC+CGG | 0.489648 | 3.1:-3740675 | None:intergenic |
| CGGAGAGCACGCTGAGCGTA+TGG | 0.490492 | 3.1:+3738664 | MS.gene78844:CDS |
| TCCCAATGTTGAGCCTTATC+CGG | 0.490951 | 3.1:+3740933 | MS.gene78844:CDS |
| TCGTGAAGCTCGTTAATAAA+CGG | 0.493110 | 3.1:-3738798 | None:intergenic |
| GCGGTATAATACTCACTTAG+TGG | 0.494631 | 3.1:+3737536 | MS.gene78844:CDS |
| GGCTCAGTTTAGGCAAGCCC+AGG | 0.496816 | 3.1:+3740873 | MS.gene78844:CDS |
| TTGGGCGTCTGAGGCGTTCA+AGG | 0.500299 | 3.1:+3738565 | MS.gene78844:CDS |
| AAGAACCGGGCGTCGGAAAA+GGG | 0.501037 | 3.1:+3738608 | MS.gene78844:CDS |
| CTCTTTCCATTAGGTTTCGG+AGG | 0.502358 | 3.1:-3737495 | None:intergenic |
| GCCTTATCCGGTAGATGAGC+AGG | 0.503034 | 3.1:+3740945 | MS.gene78844:CDS |
| GCAGTAGAAATGACAGGGAT+CGG | 0.504341 | 3.1:-3737585 | None:intergenic |
| GAAAGAGCAAGGGCAACAGC+AGG | 0.505028 | 3.1:+3737511 | MS.gene78844:CDS |
| ATTCTTTGACCTTCAACACT+TGG | 0.510375 | 3.1:+3740587 | MS.gene78844:CDS |
| TCATCATCCTGCTCATCTAC+CGG | 0.511400 | 3.1:-3740952 | None:intergenic |
| GCAGGAGCAGAAGCCGTCGC+AGG | 0.511679 | 3.1:-3737684 | None:intergenic |
| AAGATTTGCTTAACCGTCAA+AGG | 0.511841 | 3.1:+3740833 | MS.gene78844:CDS |
| TGAGGAGCAGAAGCCGTCGC+AGG | 0.513097 | 3.1:-3737702 | None:intergenic |
| AATACTGCGACGAGCGTGCT+AGG | 0.515851 | 3.1:+3738847 | MS.gene78844:CDS |
| ATGATAGCAGTTATGAATGA+TGG | 0.523463 | 3.1:-3738216 | None:intergenic |
| GTGGGAGGGACCTTGAGCCT+GGG | 0.524940 | 3.1:-3740890 | None:intergenic |
| GCTTCAGCAGCCGGTTTGCA+AGG | 0.525763 | 3.1:-3738185 | None:intergenic |
| CAGTAGAAATGACAGGGATC+GGG | 0.530289 | 3.1:-3737584 | None:intergenic |
| GGACCCTTCACCATGATTGA+GGG | 0.531656 | 3.1:-3740710 | None:intergenic |
| TACTGGAGGGCACATGTAAG+TGG | 0.532234 | 3.1:-3737727 | None:intergenic |
| CCAATTCATCAAAGATAGGC+GGG | 0.535490 | 3.1:-3738535 | None:intergenic |
| GTAGATGCAGTAGAAATGAC+AGG | 0.540103 | 3.1:-3737591 | None:intergenic |
| AGGAGCAGCTACACTAGCCT+GGG | 0.541346 | 3.1:-3737664 | None:intergenic |
| TAACCGTCAAAGGTCATATG+AGG | 0.541572 | 3.1:+3740843 | MS.gene78844:CDS |
| GAAGGTCCCATAAGGAGGTA+TGG | 0.543026 | 3.1:-3737769 | None:intergenic |
| TTAAAAGCGGCGCACTAGTG+TGG | 0.545514 | 3.1:-3740909 | None:intergenic |
| GGAGGAAGGAAGGTCCCATA+AGG | 0.547026 | 3.1:-3737777 | None:intergenic |
| AAGGTCATATGAGGAGCAGC+TGG | 0.548144 | 3.1:+3740852 | MS.gene78844:CDS |
| TTAATTGCTCTTGCGTCAAA+CGG | 0.548902 | 3.1:-3740777 | None:intergenic |
| GACGGCTTCTGCTCCTGCGA+CGG | 0.550829 | 3.1:+3737689 | MS.gene78844:CDS |
| TAAAAGCGGCGCACTAGTGT+GGG | 0.551339 | 3.1:-3740908 | None:intergenic |
| CTGAGCTGACGCCAGAGATG+CGG | 0.553348 | 3.1:+3740743 | MS.gene78844:CDS |
| ATGTGCCCTCCAGTACATCC+TGG | 0.557262 | 3.1:+3737735 | MS.gene78844:CDS |
| CGAGCGTGCTAGGAGTGTGC+AGG | 0.557294 | 3.1:+3738857 | MS.gene78844:CDS |
| AGTTGCTGGAGACAAGAAGA+AGG | 0.557374 | 3.1:+3740615 | MS.gene78844:CDS |
| TACCGGATAAGGCTCAACAT+TGG | 0.558734 | 3.1:-3740935 | None:intergenic |
| GGGAGGACCCAGGTGAACCC+TGG | 0.559461 | 3.1:-3737644 | None:intergenic |
| ATAGGCTAGGAGGTTACGTC+GGG | 0.559517 | 3.1:+3738773 | MS.gene78844:intron |
| TTTAGGCAAGCCCAGGCTCA+AGG | 0.561956 | 3.1:+3740880 | MS.gene78844:CDS |
| CTAAGACTAACCCTCAATCA+TGG | 0.562434 | 3.1:+3740700 | MS.gene78844:CDS |
| GGTATGGTGCCATAATATCC+AGG | 0.563962 | 3.1:-3737753 | None:intergenic |
| TCTGCTGCATCTTCTAGCCA+GGG | 0.564330 | 3.1:+3737627 | MS.gene78844:CDS |
| TTGAACAGGAGGAGTATGAC+TGG | 0.565531 | 3.1:+3740524 | MS.gene78844:intron |
| ACAAGAAAATGTGGTTGAAG+AGG | 0.567814 | 3.1:+3737989 | MS.gene78844:CDS |
| GCAAGGGCAACAGCAGGAAG+CGG | 0.568162 | 3.1:+3737517 | MS.gene78844:CDS |
| GTAACTTGGCTGCTAACTAC+CGG | 0.570124 | 3.1:+3740656 | MS.gene78844:CDS |
| TGTCTCCTCAAACCGCATAC+GGG | 0.571839 | 3.1:-3738489 | None:intergenic |
| ACGCTCGTCGCAGTATTGGC+CGG | 0.572743 | 3.1:-3738841 | None:intergenic |
| GGTTAAGTATTGGGCGTCTG+AGG | 0.575914 | 3.1:+3738556 | MS.gene78844:CDS |
| TAGTGTAGCTGCTCCTGCGA+CGG | 0.577442 | 3.1:+3737671 | MS.gene78844:CDS |
| CTTAGTGGACGCAGCGACAG+AGG | 0.579770 | 3.1:+3737551 | MS.gene78844:CDS |
| AGCAAAGAAGAACCGGGCGT+CGG | 0.582886 | 3.1:+3738601 | MS.gene78844:CDS |
| CAAGAAAATGTGGTTGAAGA+GGG | 0.585597 | 3.1:+3737990 | MS.gene78844:CDS |
| GAGAATCTCTCGGATAATCC+GGG | 0.586945 | 3.1:-3738046 | None:intergenic |
| CTAACCCTCAATCATGGTGA+AGG | 0.587704 | 3.1:+3740706 | MS.gene78844:CDS |
| ATGAAAGCTCGGAGGAAGGA+AGG | 0.588058 | 3.1:-3737787 | None:intergenic |
| TGAACTTACGAGTTTCCACT+AGG | 0.589440 | 3.1:-3738089 | None:intergenic |
| AGAGCAATTAACACAACAGA+TGG | 0.589765 | 3.1:+3740789 | MS.gene78844:CDS |
| GGGCACATGTAAGTGGGATG+AGG | 0.589794 | 3.1:-3737720 | None:intergenic |
| GAAACCTAATGGAAAGAGCA+AGG | 0.595131 | 3.1:+3737500 | MS.gene78844:CDS |
| CTTCTAGCCAGGGTTCACCT+GGG | 0.596744 | 3.1:+3737637 | MS.gene78844:CDS |
| TATGGTGGTAAATGAAAGCT+CGG | 0.597302 | 3.1:-3737798 | None:intergenic |
| CTTGTGACAAATAGGCTAGG+AGG | 0.600406 | 3.1:+3738763 | MS.gene78844:intron |
| AAGCGGCGCACTAGTGTGGG+AGG | 0.600468 | 3.1:-3740905 | None:intergenic |
| CGATTCATCTTAAGGCCTAG+TGG | 0.601629 | 3.1:+3738074 | MS.gene78844:CDS |
| CGACAAAGCAAAGAAGAACC+GGG | 0.601764 | 3.1:+3738595 | MS.gene78844:CDS |
| GTATGACTGGCAGCTTGCCG+AGG | 0.605331 | 3.1:+3740537 | MS.gene78844:CDS |
| GGTAGATGAGCAGGATGATG+AGG | 0.613830 | 3.1:+3740954 | MS.gene78844:CDS |
| ACCAATTCATCAAAGATAGG+CGG | 0.615254 | 3.1:-3738536 | None:intergenic |
| TACTTAGAAGAGCCCGTATG+CGG | 0.616606 | 3.1:+3738477 | MS.gene78844:CDS |
| TAATATCCAGGATGTACTGG+AGG | 0.622903 | 3.1:-3737741 | None:intergenic |
| CTTGGCTGCTAACTACCGGA+AGG | 0.625442 | 3.1:+3740660 | MS.gene78844:CDS |
| GTAAATGAAAGCTCGGAGGA+AGG | 0.630697 | 3.1:-3737791 | None:intergenic |
| GTTGCTGGAGACAAGAAGAA+GGG | 0.632114 | 3.1:+3740616 | MS.gene78844:CDS |
| AATAGGCTAGGAGGTTACGT+CGG | 0.632889 | 3.1:+3738772 | MS.gene78844:intron |
| AATCGACGACGAGAATCTCT+CGG | 0.634346 | 3.1:-3738056 | None:intergenic |
| TTGGAAGATATATGGTGATG+TGG | 0.635278 | 3.1:+3738244 | MS.gene78844:CDS |
| AATGTGGTTGAAGAGGGTGG+TGG | 0.635912 | 3.1:+3737996 | MS.gene78844:CDS |
| GGAAGGAAGGTCCCATAAGG+AGG | 0.636273 | 3.1:-3737774 | None:intergenic |
| TAACCCTCAATCATGGTGAA+GGG | 0.637969 | 3.1:+3740707 | MS.gene78844:CDS |
| TGTGGTGGGACTGAATATGG+TGG | 0.638237 | 3.1:-3737813 | None:intergenic |
| AAACCTAATGGAAAGAGCAA+GGG | 0.642664 | 3.1:+3737501 | MS.gene78844:CDS |
| ACACTAGCCTGGGAGGACCC+AGG | 0.643294 | 3.1:-3737654 | None:intergenic |
| GGATGATGAGGATGATGATG+AGG | 0.644086 | 3.1:+3740966 | MS.gene78844:CDS |
| AGACCCATTAGAAATAGCCT+CGG | 0.644902 | 3.1:-3740554 | None:intergenic |
| GAAAATGTGGTTGAAGAGGG+TGG | 0.649938 | 3.1:+3737993 | MS.gene78844:CDS |
| ACTGGTGGTTGCTTAAGCAA+CGG | 0.650281 | 3.1:+3738644 | MS.gene78844:CDS |
| CGTCAGCTCAGGCTGCTGGG+AGG | 0.651312 | 3.1:-3740731 | None:intergenic |
| ACAACAGATGGCAAGTCAAG+CGG | 0.653147 | 3.1:+3740801 | MS.gene78844:CDS |
| TCAACATTGGGACTTAAAAG+CGG | 0.654070 | 3.1:-3740922 | None:intergenic |
| AGCGGCGCACTAGTGTGGGA+GGG | 0.654626 | 3.1:-3740904 | None:intergenic |
| ACAGCCCCAACAAGAAAATG+TGG | 0.655182 | 3.1:+3737980 | MS.gene78844:intron |
| AGCAGCTACACTAGCCTGGG+AGG | 0.655945 | 3.1:-3737661 | None:intergenic |
| TTGGCTGCTAACTACCGGAA+GGG | 0.659168 | 3.1:+3740661 | MS.gene78844:CDS |
| GGAGGATGCATTCACACTGG+TGG | 0.660778 | 3.1:+3738629 | MS.gene78844:CDS |
| AACCGGGCGTCGGAAAAGGG+AGG | 0.663571 | 3.1:+3738611 | MS.gene78844:CDS |
| AAGGGAGGATGCATTCACAC+TGG | 0.674246 | 3.1:+3738626 | MS.gene78844:CDS |
| AATATCCAGGATGTACTGGA+GGG | 0.686056 | 3.1:-3737740 | None:intergenic |
| TAGATGCAGTAGAAATGACA+GGG | 0.708529 | 3.1:-3737590 | None:intergenic |
| ACTGGAGGGCACATGTAAGT+GGG | 0.711086 | 3.1:-3737726 | None:intergenic |
| ATAGGCGGGCCAATCCAATG+CGG | 0.767887 | 3.1:-3738521 | None:intergenic |
| GGTGGTAAATGAAAGCTCGG+AGG | 0.772025 | 3.1:-3737795 | None:intergenic |
| GGTTTGAGGAGACAAGAAAG+CGG | 0.777205 | 3.1:+3738498 | MS.gene78844:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACAATAAAAATTAAATGATA+TGG | - | chr3.1:3738718-3738737 | None:intergenic | 10.0% |
| !!! | TTTTGATAATAAACAAAATA+AGG | - | chr3.1:3740417-3740436 | None:intergenic | 10.0% |
| !!! | AAAATTGAGGATTTTATAAA+AGG | + | chr3.1:3739329-3739348 | MS.gene78844:intron | 15.0% |
| !!! | TATTTTGTTATTATTTGAAC+AGG | + | chr3.1:3740510-3740529 | MS.gene78844:intron | 15.0% |
| !! | AATTCGGATTAAAAAAAATG+TGG | - | chr3.1:3738972-3738991 | None:intergenic | 20.0% |
| !! | CAGTAAAAATGAAATTGATA+TGG | - | chr3.1:3739580-3739599 | None:intergenic | 20.0% |
| !! | TATAAAGATTAAGAACACAT+TGG | - | chr3.1:3740244-3740263 | None:intergenic | 20.0% |
| !! | TGAAAAATTTGAGAAAAATC+AGG | + | chr3.1:3739489-3739508 | MS.gene78844:intron | 20.0% |
| !!! | AAGCCTTATAATATCTATTT+AGG | - | chr3.1:3739943-3739962 | None:intergenic | 20.0% |
| !!! | ATTTTTTTTAATCCGAATTG+TGG | + | chr3.1:3738973-3738992 | MS.gene78844:intron | 20.0% |
| !!! | TTTTATTTCTTGTGACAAAT+AGG | + | chr3.1:3738755-3738774 | MS.gene78844:intron | 20.0% |
| ! | AAAATATTTAAGGACAGAAC+TGG | - | chr3.1:3740496-3740515 | None:intergenic | 25.0% |
| ! | AAGGAAACTAATCATAAGAA+TGG | - | chr3.1:3740398-3740417 | None:intergenic | 25.0% |
| ! | ACAAATTCATAAGCAATAAC+AGG | - | chr3.1:3739815-3739834 | None:intergenic | 25.0% |
| ! | CAAATTCATAAGCAATAACA+GGG | - | chr3.1:3739814-3739833 | None:intergenic | 25.0% |
| ! | GAAAACTATATAGAATCAAG+TGG | - | chr3.1:3740155-3740174 | None:intergenic | 25.0% |
| ! | TAAGACTTATGATAAAACTC+TGG | - | chr3.1:3739426-3739445 | None:intergenic | 25.0% |
| ! | TGATGAATTGGTTAAGTATT+GGG | + | chr3.1:3738547-3738566 | MS.gene78844:CDS | 25.0% |
| ! | TGGCCTAAATAGATATTATA+AGG | + | chr3.1:3739937-3739956 | MS.gene78844:intron | 25.0% |
| ! | TTAACCAATTCATCAAAGAT+AGG | - | chr3.1:3738542-3738561 | None:intergenic | 25.0% |
| ! | TTGATGAATTGGTTAAGTAT+TGG | + | chr3.1:3738546-3738565 | MS.gene78844:CDS | 25.0% |
| ! | TTTGTCAATCTAATGAAATG+AGG | + | chr3.1:3739295-3739314 | MS.gene78844:intron | 25.0% |
| !! | TAGAATTTAGAACTTATCAC+AGG | + | chr3.1:3740209-3740228 | MS.gene78844:intron | 25.0% |
| !!! | GCTTTTTGAAAGAATAGAAA+AGG | + | chr3.1:3739538-3739557 | MS.gene78844:intron | 25.0% |
| !!! | TGCACTATTTTTTTTAAGTG+TGG | + | chr3.1:3739021-3739040 | MS.gene78844:intron | 25.0% |
| !!! | TTTGTTATTATTTGAACAGG+AGG | + | chr3.1:3740513-3740532 | MS.gene78844:intron | 25.0% |
| AAAACTGACTACTAAGGTAA+GGG | - | chr3.1:3739972-3739991 | None:intergenic | 30.0% | |
| AAAGTCGATTAAAATTACCG+CGG | - | chr3.1:3739770-3739789 | None:intergenic | 30.0% | |
| AACCTACTTCCTTAATTGTA+TGG | + | chr3.1:3739264-3739283 | MS.gene78844:intron | 30.0% | |
| AAGACTCATAAGTCAACATT+AGG | - | chr3.1:3739725-3739744 | None:intergenic | 30.0% | |
| AATAACAGAGAAACAGTGTA+AGG | - | chr3.1:3740466-3740485 | None:intergenic | 30.0% | |
| AATGATAAACAAGACAGAAC+TGG | - | chr3.1:3738947-3738966 | None:intergenic | 30.0% | |
| ATGATAGCAGTTATGAATGA+TGG | - | chr3.1:3738219-3738238 | None:intergenic | 30.0% | |
| CATTACATAGCTCAATTCTT+CGG | - | chr3.1:3739646-3739665 | None:intergenic | 30.0% | |
| CGACTTTGTTAATTCTTACA+AGG | + | chr3.1:3739783-3739802 | MS.gene78844:intron | 30.0% | |
| GGTTTCTGTCAAAAAAATTG+AGG | + | chr3.1:3739316-3739335 | MS.gene78844:intron | 30.0% | |
| TGTGAATTATGATCGATTGT+TGG | + | chr3.1:3739376-3739395 | MS.gene78844:intron | 30.0% | |
| TGTTGTTGAATTTCTCTGTT+TGG | + | chr3.1:3739598-3739617 | MS.gene78844:intron | 30.0% | |
| TTATGATAAAACTCTGGTGA+GGG | - | chr3.1:3739420-3739439 | None:intergenic | 30.0% | |
| TTTGTGTTATAGATGTCTTG+CGG | + | chr3.1:3739830-3739849 | MS.gene78844:intron | 30.0% | |
| ! | ATAACTGCTATCATCACTTT+TGG | + | chr3.1:3738225-3738244 | MS.gene78844:CDS | 30.0% |
| ! | GTTGTTTAATGATGTTTTCC+CGG | + | chr3.1:3738028-3738047 | MS.gene78844:CDS | 30.0% |
| ! | TTCAACCACATTTTCTTGTT+GGG | - | chr3.1:3737988-3738007 | None:intergenic | 30.0% |
| ! | TTTGATGATACGAAACTGAA+CGG | + | chr3.1:3739068-3739087 | MS.gene78844:intron | 30.0% |
| ! | TTTTCTTGCAATCACATAAC+AGG | - | chr3.1:3740332-3740351 | None:intergenic | 30.0% |
| !! | CATCACTTTTGGAAGATATA+TGG | + | chr3.1:3738236-3738255 | MS.gene78844:CDS | 30.0% |
| !!! | AACTTTTTTCCAAGTGTTGA+AGG | - | chr3.1:3740599-3740618 | None:intergenic | 30.0% |
| AAACCTAATGGAAAGAGCAA+GGG | + | chr3.1:3737501-3737520 | MS.gene78844:CDS | 35.0% | |
| AACACTTGGAAAAAAGTTGC+TGG | + | chr3.1:3740601-3740620 | MS.gene78844:CDS | 35.0% | |
| AAGAAGAAGGGAAAGCTATA+CGG | + | chr3.1:3740628-3740647 | MS.gene78844:CDS | 35.0% | |
| AAGATTAAGAACACATTGGC+TGG | - | chr3.1:3740240-3740259 | None:intergenic | 35.0% | |
| ACAAGAAAATGTGGTTGAAG+AGG | + | chr3.1:3737989-3738008 | MS.gene78844:CDS | 35.0% | |
| ACAATTAAGGAAGTAGGTTC+TGG | - | chr3.1:3739263-3739282 | None:intergenic | 35.0% | |
| ACCAATTCATCAAAGATAGG+CGG | - | chr3.1:3738539-3738558 | None:intergenic | 35.0% | |
| ACGACGAAACACACAAAAAT+AGG | + | chr3.1:3738817-3738836 | MS.gene78844:CDS | 35.0% | |
| AGAGCAATTAACACAACAGA+TGG | + | chr3.1:3740789-3740808 | MS.gene78844:CDS | 35.0% | |
| AGCATCAGACCATACAATTA+AGG | - | chr3.1:3739276-3739295 | None:intergenic | 35.0% | |
| ATCTCAAGAGTTGCATCTTT+AGG | - | chr3.1:3739451-3739470 | None:intergenic | 35.0% | |
| ATTCTTTGACCTTCAACACT+TGG | + | chr3.1:3740587-3740606 | MS.gene78844:CDS | 35.0% | |
| CAAAACTGACTACTAAGGTA+AGG | - | chr3.1:3739973-3739992 | None:intergenic | 35.0% | |
| CAAGAAAATGTGGTTGAAGA+GGG | + | chr3.1:3737990-3738009 | MS.gene78844:CDS | 35.0% | |
| CAATTAAGGAAGTAGGTTCT+GGG | - | chr3.1:3739262-3739281 | None:intergenic | 35.0% | |
| CGAAGAATTGAGCTATGTAA+TGG | + | chr3.1:3739644-3739663 | MS.gene78844:intron | 35.0% | |
| CTTATGATAAAACTCTGGTG+AGG | - | chr3.1:3739421-3739440 | None:intergenic | 35.0% | |
| GAAACACACAAAAATAGGTC+CGG | + | chr3.1:3738822-3738841 | MS.gene78844:CDS | 35.0% | |
| GACCATACAATTAAGGAAGT+AGG | - | chr3.1:3739269-3739288 | None:intergenic | 35.0% | |
| GGCAAGTTGTAATTGCTTAT+AGG | - | chr3.1:3740306-3740325 | None:intergenic | 35.0% | |
| TAGATGCAGTAGAAATGACA+GGG | - | chr3.1:3737593-3737612 | None:intergenic | 35.0% | |
| TATGGTGGTAAATGAAAGCT+CGG | - | chr3.1:3737801-3737820 | None:intergenic | 35.0% | |
| TCAACATTGGGACTTAAAAG+CGG | - | chr3.1:3740925-3740944 | None:intergenic | 35.0% | |
| TCGTGAAGCTCGTTAATAAA+CGG | - | chr3.1:3738801-3738820 | None:intergenic | 35.0% | |
| TTAATTGCTCTTGCGTCAAA+CGG | - | chr3.1:3740780-3740799 | None:intergenic | 35.0% | |
| TTGCAATCACATAACAGGTT+TGG | - | chr3.1:3740327-3740346 | None:intergenic | 35.0% | |
| TTGCTCTTTCCATTAGGTTT+CGG | - | chr3.1:3737501-3737520 | None:intergenic | 35.0% | |
| TTTCTTGTGACAAATAGGCT+AGG | + | chr3.1:3738760-3738779 | MS.gene78844:intron | 35.0% | |
| ! | AAGATTTGCTTAACCGTCAA+AGG | + | chr3.1:3740833-3740852 | MS.gene78844:CDS | 35.0% |
| ! | ATGATAATGAAAAAGAGCGC+TGG | + | chr3.1:3738267-3738286 | MS.gene78844:CDS | 35.0% |
| ! | CTTCAACCACATTTTCTTGT+TGG | - | chr3.1:3737989-3738008 | None:intergenic | 35.0% |
| ! | GTAGGAATAGCTAAGAGTAT+TGG | + | chr3.1:3739212-3739231 | MS.gene78844:intron | 35.0% |
| ! | TACCTTAGTAGTCAGTTTTG+TGG | + | chr3.1:3739973-3739992 | MS.gene78844:intron | 35.0% |
| ! | TCAACCACATTTTCTTGTTG+GGG | - | chr3.1:3737987-3738006 | None:intergenic | 35.0% |
| ! | TTGGAAGATATATGGTGATG+TGG | + | chr3.1:3738244-3738263 | MS.gene78844:CDS | 35.0% |
| !! | ACCTTAGTAGTCAGTTTTGT+GGG | + | chr3.1:3739974-3739993 | MS.gene78844:intron | 35.0% |
| !! | AGAGTATTGGCTCCAAAAAT+TGG | + | chr3.1:3739225-3739244 | MS.gene78844:intron | 35.0% |
| !! | ATGATTGAGGGTTAGTCTTA+GGG | - | chr3.1:3740701-3740720 | None:intergenic | 35.0% |
| !! | ATTTGTTGTTGGGAAAAAGG+TGG | - | chr3.1:3737885-3737904 | None:intergenic | 35.0% |
| !! | GAGTATTGGCTCCAAAAATT+GGG | + | chr3.1:3739226-3739245 | MS.gene78844:intron | 35.0% |
| !! | TTTGTTGTTGGGAAAAAGGT+GGG | - | chr3.1:3737884-3737903 | None:intergenic | 35.0% |
| !!! | GAAAAAGGTGGGTTTTATTG+TGG | - | chr3.1:3737873-3737892 | None:intergenic | 35.0% |
| !!! | GCACTATTTTTGTTGCAGTT+TGG | + | chr3.1:3738919-3738938 | MS.gene78844:intron | 35.0% |
| !!! | TGGTGGATTTTGTTGTTGTT+GGG | - | chr3.1:3737934-3737953 | None:intergenic | 35.0% |
| AATATCCAGGATGTACTGGA+GGG | - | chr3.1:3737743-3737762 | None:intergenic | 40.0% | |
| AATGCAGACCAAGTGTTCTT+GGG | + | chr3.1:3738388-3738407 | MS.gene78844:intron | 40.0% | |
| AGACCCATTAGAAATAGCCT+CGG | - | chr3.1:3740557-3740576 | None:intergenic | 40.0% | |
| ATAGTGCACAGACCACAATT+CGG | - | chr3.1:3738988-3739007 | None:intergenic | 40.0% | |
| ATTTAAGGACAGAACTGGCA+AGG | - | chr3.1:3740491-3740510 | None:intergenic | 40.0% | |
| CCAATTCATCAAAGATAGGC+GGG | - | chr3.1:3738538-3738557 | None:intergenic | 40.0% | |
| CCAGTACATCCTGGATATTA+TGG | + | chr3.1:3737744-3737763 | MS.gene78844:CDS | 40.0% | |
| CCATAATATCCAGGATGTAC+TGG | - | chr3.1:3737747-3737766 | None:intergenic | 40.0% | |
| CTAAGACTAACCCTCAATCA+TGG | + | chr3.1:3740700-3740719 | MS.gene78844:CDS | 40.0% | |
| GAAACCTAATGGAAAGAGCA+AGG | + | chr3.1:3737500-3737519 | MS.gene78844:CDS | 40.0% | |
| GAAGGTGATGAATGATACAG+AGG | - | chr3.1:3739869-3739888 | None:intergenic | 40.0% | |
| GCGGTATAATACTCACTTAG+TGG | + | chr3.1:3737536-3737555 | MS.gene78844:CDS | 40.0% | |
| GTAGATGCAGTAGAAATGAC+AGG | - | chr3.1:3737594-3737613 | None:intergenic | 40.0% | |
| TAACCCTCAATCATGGTGAA+GGG | + | chr3.1:3740707-3740726 | MS.gene78844:CDS | 40.0% | |
| TAACCGTCAAAGGTCATATG+AGG | + | chr3.1:3740843-3740862 | MS.gene78844:CDS | 40.0% | |
| TAATATCCAGGATGTACTGG+AGG | - | chr3.1:3737744-3737763 | None:intergenic | 40.0% | |
| TAATGCAGACCAAGTGTTCT+TGG | + | chr3.1:3738387-3738406 | MS.gene78844:intron | 40.0% | |
| TCCCACAAAACTGACTACTA+AGG | - | chr3.1:3739978-3739997 | None:intergenic | 40.0% | |
| TCTATTTAGGCCATGTCTCT+AGG | - | chr3.1:3739930-3739949 | None:intergenic | 40.0% | |
| TGAACTTACGAGTTTCCACT+AGG | - | chr3.1:3738092-3738111 | None:intergenic | 40.0% | |
| TGTCTCTAGGCAATGAAGAA+CGG | - | chr3.1:3739917-3739936 | None:intergenic | 40.0% | |
| TTAAAATTACCGCGGACAGA+TGG | - | chr3.1:3739762-3739781 | None:intergenic | 40.0% | |
| TTCTTCATTGCCTAGAGACA+TGG | + | chr3.1:3739917-3739936 | MS.gene78844:intron | 40.0% | |
| ! | ATTGGCTCCAAAAATTGGGT+GGG | + | chr3.1:3739230-3739249 | MS.gene78844:intron | 40.0% |
| ! | CAGATTTTTGCCTTGCAAAC+CGG | + | chr3.1:3738175-3738194 | MS.gene78844:intron | 40.0% |
| ! | CTTGTCGTATCTCTCAGTTT+TGG | + | chr3.1:3738884-3738903 | MS.gene78844:intron | 40.0% |
| ! | GACATTTCCCACCCAATTTT+TGG | - | chr3.1:3739240-3739259 | None:intergenic | 40.0% |
| ! | TGTGGTAAGCTTTAGCTCAA+GGG | + | chr3.1:3739039-3739058 | MS.gene78844:intron | 40.0% |
| !! | ATGAAAAAGAGCGCTGGTTT+AGG | + | chr3.1:3738273-3738292 | MS.gene78844:CDS | 40.0% |
| !! | ATTTGTTGTTGTTGGGGAAG+GGG | - | chr3.1:3737846-3737865 | None:intergenic | 40.0% |
| !! | CATGATTGAGGGTTAGTCTT+AGG | - | chr3.1:3740702-3740721 | None:intergenic | 40.0% |
| !! | CGGATTTGTTGTTGGGAAAA+AGG | - | chr3.1:3737888-3737907 | None:intergenic | 40.0% |
| !! | GATTTGTTGTTGTTGGGGAA+GGG | - | chr3.1:3737847-3737866 | None:intergenic | 40.0% |
| !! | TATTGGCTCCAAAAATTGGG+TGG | + | chr3.1:3739229-3739248 | MS.gene78844:intron | 40.0% |
| !! | TGGAGGGATTTGTTGTTGTT+GGG | - | chr3.1:3737853-3737872 | None:intergenic | 40.0% |
| !! | TTGCCGAGGCTATTTCTAAT+GGG | + | chr3.1:3740551-3740570 | MS.gene78844:CDS | 40.0% |
| !! | TTGTGGACGGATTTGTTGTT+GGG | - | chr3.1:3737895-3737914 | None:intergenic | 40.0% |
| !! | TTTTGTGGTGGGACTGAATA+TGG | - | chr3.1:3737819-3737838 | None:intergenic | 40.0% |
| !!! | AAAGGTGGGTTTTATTGTGG+AGG | - | chr3.1:3737870-3737889 | None:intergenic | 40.0% |
| !!! | AAGGTGGGTTTTATTGTGGA+GGG | - | chr3.1:3737869-3737888 | None:intergenic | 40.0% |
| !!! | GGTGGATTTTGTTGTTGTTG+GGG | - | chr3.1:3737933-3737952 | None:intergenic | 40.0% |
| !!! | GTGGTGGATTTTGTTGTTGT+TGG | - | chr3.1:3737935-3737954 | None:intergenic | 40.0% |
| !!! | TGGTGGGTTTTGTTGTTGTT+GGG | - | chr3.1:3737961-3737980 | None:intergenic | 40.0% |
| !!! | TTTTGTTGTTGTTGGGGTTG+TGG | - | chr3.1:3737954-3737973 | None:intergenic | 40.0% |
| AAGGGAAAGCTATACGGTCT+TGG | + | chr3.1:3740634-3740653 | MS.gene78844:CDS | 45.0% | |
| AATAGGCTAGGAGGTTACGT+CGG | + | chr3.1:3738772-3738791 | MS.gene78844:intron | 45.0% | |
| AATCGACGACGAGAATCTCT+CGG | - | chr3.1:3738059-3738078 | None:intergenic | 45.0% | |
| ACAACAGATGGCAAGTCAAG+CGG | + | chr3.1:3740801-3740820 | MS.gene78844:CDS | 45.0% | |
| ACAGCCCCAACAAGAAAATG+TGG | + | chr3.1:3737980-3737999 | MS.gene78844:intron | 45.0% | |
| ACCGGATAAGGCTCAACATT+GGG | - | chr3.1:3740937-3740956 | None:intergenic | 45.0% | |
| ACTGGTGGTTGCTTAAGCAA+CGG | + | chr3.1:3738644-3738663 | MS.gene78844:CDS | 45.0% | |
| AGTTGCTGGAGACAAGAAGA+AGG | + | chr3.1:3740615-3740634 | MS.gene78844:CDS | 45.0% | |
| ATGGCACCATACCTCCTTAT+GGG | + | chr3.1:3737763-3737782 | MS.gene78844:CDS | 45.0% | |
| CAGTAGAAATGACAGGGATC+GGG | - | chr3.1:3737587-3737606 | None:intergenic | 45.0% | |
| CCCGCCTATCTTTGATGAAT+TGG | + | chr3.1:3738535-3738554 | MS.gene78844:CDS | 45.0% | |
| CCGACAAAGCAAAGAAGAAC+CGG | + | chr3.1:3738594-3738613 | MS.gene78844:CDS | 45.0% | |
| CCGGTTCTTCTTTGCTTTGT+CGG | - | chr3.1:3738597-3738616 | None:intergenic | 45.0% | |
| CCTTCATCATGACACGTTAG+CGG | + | chr3.1:3739884-3739903 | MS.gene78844:intron | 45.0% | |
| CGACAAAGCAAAGAAGAACC+GGG | + | chr3.1:3738595-3738614 | MS.gene78844:CDS | 45.0% | |
| CGAGAATCTCTCGGATAATC+CGG | - | chr3.1:3738050-3738069 | None:intergenic | 45.0% | |
| CGATTCATCTTAAGGCCTAG+TGG | + | chr3.1:3738074-3738093 | MS.gene78844:CDS | 45.0% | |
| CTAACCCTCAATCATGGTGA+AGG | + | chr3.1:3740706-3740725 | MS.gene78844:CDS | 45.0% | |
| CTCTTTCCATTAGGTTTCGG+AGG | - | chr3.1:3737498-3737517 | None:intergenic | 45.0% | |
| CTTGTGACAAATAGGCTAGG+AGG | + | chr3.1:3738763-3738782 | MS.gene78844:intron | 45.0% | |
| GAAAATGTGGTTGAAGAGGG+TGG | + | chr3.1:3737993-3738012 | MS.gene78844:CDS | 45.0% | |
| GAGAATCTCTCGGATAATCC+GGG | - | chr3.1:3738049-3738068 | None:intergenic | 45.0% | |
| GATAAAACTCTGGTGAGGGA+AGG | - | chr3.1:3739416-3739435 | None:intergenic | 45.0% | |
| GCAGTAGAAATGACAGGGAT+CGG | - | chr3.1:3737588-3737607 | None:intergenic | 45.0% | |
| GCTCCTCATATGACCTTTGA+CGG | - | chr3.1:3740849-3740868 | None:intergenic | 45.0% | |
| GGTTTGAGGAGACAAGAAAG+CGG | + | chr3.1:3738498-3738517 | MS.gene78844:CDS | 45.0% | |
| GTAAATGAAAGCTCGGAGGA+AGG | - | chr3.1:3737794-3737813 | None:intergenic | 45.0% | |
| GTAACTTGGCTGCTAACTAC+CGG | + | chr3.1:3740656-3740675 | MS.gene78844:CDS | 45.0% | |
| GTTGCTGGAGACAAGAAGAA+GGG | + | chr3.1:3740616-3740635 | MS.gene78844:CDS | 45.0% | |
| TACCGGATAAGGCTCAACAT+TGG | - | chr3.1:3740938-3740957 | None:intergenic | 45.0% | |
| TACTTAGAAGAGCCCGTATG+CGG | + | chr3.1:3738477-3738496 | MS.gene78844:CDS | 45.0% | |
| TAGATGTCTTGCGGCAACTT+TGG | + | chr3.1:3739839-3739858 | MS.gene78844:intron | 45.0% | |
| TATGGCACCATACCTCCTTA+TGG | + | chr3.1:3737762-3737781 | MS.gene78844:CDS | 45.0% | |
| TCATCATCCTGCTCATCTAC+CGG | - | chr3.1:3740955-3740974 | None:intergenic | 45.0% | |
| TTGATGCAACACTACCCTTC+CGG | - | chr3.1:3740678-3740697 | None:intergenic | 45.0% | |
| TTGCCCTTGCTCTTTCCATT+AGG | - | chr3.1:3737507-3737526 | None:intergenic | 45.0% | |
| TTGTCTCCTCAAACCGCATA+CGG | - | chr3.1:3738493-3738512 | None:intergenic | 45.0% | |
| TTGTGATATCAGCAGCAACG+AGG | - | chr3.1:3739670-3739689 | None:intergenic | 45.0% | |
| ! | ACATTTTCTTGTTGGGGCTG+TGG | - | chr3.1:3737981-3738000 | None:intergenic | 45.0% |
| ! | GCTATACGGTCTTGGTAACT+TGG | + | chr3.1:3740642-3740661 | MS.gene78844:CDS | 45.0% |
| ! | GGATGATGAGGATGATGATG+AGG | + | chr3.1:3740966-3740985 | MS.gene78844:CDS | 45.0% |
| ! | GTGTGGTAAGCTTTAGCTCA+AGG | + | chr3.1:3739038-3739057 | MS.gene78844:intron | 45.0% |
| ! | GTTGTTGTTGGGGAACATGT+GGG | - | chr3.1:3737923-3737942 | None:intergenic | 45.0% |
| ! | TCCCAATGTTGAGCCTTATC+CGG | + | chr3.1:3740933-3740952 | MS.gene78844:CDS | 45.0% |
| ! | TGTTGTTGTTGGGGAACATG+TGG | - | chr3.1:3737924-3737943 | None:intergenic | 45.0% |
| ! | TTGAACAGGAGGAGTATGAC+TGG | + | chr3.1:3740524-3740543 | MS.gene78844:intron | 45.0% |
| !! | CTCGTCGTCGATTCATCTTA+AGG | + | chr3.1:3738066-3738085 | MS.gene78844:CDS | 45.0% |
| !! | CTTGCCGAGGCTATTTCTAA+TGG | + | chr3.1:3740550-3740569 | MS.gene78844:CDS | 45.0% |
| !! | GGAGGGATTTGTTGTTGTTG+GGG | - | chr3.1:3737852-3737871 | None:intergenic | 45.0% |
| !! | GGATTTGTTGTTGTTGGGGA+AGG | - | chr3.1:3737848-3737867 | None:intergenic | 45.0% |
| !! | GGTATGGTGCCATAATATCC+AGG | - | chr3.1:3737756-3737775 | None:intergenic | 45.0% |
| !! | GTGGAGGGATTTGTTGTTGT+TGG | - | chr3.1:3737854-3737873 | None:intergenic | 45.0% |
| !! | GTTGCAGCTCATAGTCTTGT+AGG | + | chr3.1:3739194-3739213 | MS.gene78844:intron | 45.0% |
| !! | GTTGTGGACGGATTTGTTGT+TGG | - | chr3.1:3737896-3737915 | None:intergenic | 45.0% |
| !!! | CATGTGGGTTTTGTTGTGGA+CGG | - | chr3.1:3737908-3737927 | None:intergenic | 45.0% |
| !!! | GGAACATGTGGGTTTTGTTG+TGG | - | chr3.1:3737912-3737931 | None:intergenic | 45.0% |
| !!! | GGTGGGTTTTGTTGTTGTTG+GGG | - | chr3.1:3737960-3737979 | None:intergenic | 45.0% |
| !!! | GTGGTGGGTTTTGTTGTTGT+TGG | - | chr3.1:3737962-3737981 | None:intergenic | 45.0% |
| !! | AAATAATAACAAAATATTTA+AGG | - | chr3.1:3740506-3740525 | None:intergenic | 5.0% |
| AAGGGAGGATGCATTCACAC+TGG | + | chr3.1:3738626-3738645 | MS.gene78844:CDS | 50.0% | |
| AAGGTCATATGAGGAGCAGC+TGG | + | chr3.1:3740852-3740871 | MS.gene78844:CDS | 50.0% | |
| AATGTGGTTGAAGAGGGTGG+TGG | + | chr3.1:3737996-3738015 | MS.gene78844:CDS | 50.0% | |
| AATTACCGCGGACAGATGGT+TGG | - | chr3.1:3739758-3739777 | None:intergenic | 50.0% | |
| AGGACCCTTCACCATGATTG+AGG | - | chr3.1:3740714-3740733 | None:intergenic | 50.0% | |
| ATAGGCTAGGAGGTTACGTC+GGG | + | chr3.1:3738773-3738792 | MS.gene78844:intron | 50.0% | |
| ATCTGCTGCATCTTCTAGCC+AGG | + | chr3.1:3737626-3737645 | MS.gene78844:CDS | 50.0% | |
| ATGAAAGCTCGGAGGAAGGA+AGG | - | chr3.1:3737790-3737809 | None:intergenic | 50.0% | |
| CACAGCTTCCCAAGAACACT+TGG | - | chr3.1:3738399-3738418 | None:intergenic | 50.0% | |
| CCGCTAACGTGTCATGATGA+AGG | - | chr3.1:3739887-3739906 | None:intergenic | 50.0% | |
| CTCCATACTCAGATCAGACG+CGG | - | chr3.1:3740012-3740031 | None:intergenic | 50.0% | |
| GAAGGTCCCATAAGGAGGTA+TGG | - | chr3.1:3737772-3737791 | None:intergenic | 50.0% | |
| GATCTGATTGCTTCAGCAGC+CGG | - | chr3.1:3738197-3738216 | None:intergenic | 50.0% | |
| GGACCCTTCACCATGATTGA+GGG | - | chr3.1:3740713-3740732 | None:intergenic | 50.0% | |
| GGTAGATGAGCAGGATGATG+AGG | + | chr3.1:3740954-3740973 | MS.gene78844:CDS | 50.0% | |
| GGTGGTAAATGAAAGCTCGG+AGG | - | chr3.1:3737798-3737817 | None:intergenic | 50.0% | |
| TAAAAGCGGCGCACTAGTGT+GGG | - | chr3.1:3740911-3740930 | None:intergenic | 50.0% | |
| TCCTGCTCATCTACCGGATA+AGG | - | chr3.1:3740949-3740968 | None:intergenic | 50.0% | |
| TCTGCTGCATCTTCTAGCCA+GGG | + | chr3.1:3737627-3737646 | MS.gene78844:CDS | 50.0% | |
| TCTGGTGAGGGAAGGAGTTA+GGG | - | chr3.1:3739408-3739427 | None:intergenic | 50.0% | |
| TGAATAAGCTCCCGCATCTC+TGG | - | chr3.1:3740757-3740776 | None:intergenic | 50.0% | |
| TGTCTCCTCAAACCGCATAC+GGG | - | chr3.1:3738492-3738511 | None:intergenic | 50.0% | |
| TTAAAAGCGGCGCACTAGTG+TGG | - | chr3.1:3740912-3740931 | None:intergenic | 50.0% | |
| TTGGCTGCTAACTACCGGAA+GGG | + | chr3.1:3740661-3740680 | MS.gene78844:CDS | 50.0% | |
| TTTCTTGTTGGGGCTGTGGT+GGG | - | chr3.1:3737977-3737996 | None:intergenic | 50.0% | |
| ! | ACTGGAGGGCACATGTAAGT+GGG | - | chr3.1:3737729-3737748 | None:intergenic | 50.0% |
| ! | TACTGGAGGGCACATGTAAG+TGG | - | chr3.1:3737730-3737749 | None:intergenic | 50.0% |
| ! | TGTGGTGGGACTGAATATGG+TGG | - | chr3.1:3737816-3737835 | None:intergenic | 50.0% |
| ! | TGTTGTTGTTGGGGTTGTGG+TGG | - | chr3.1:3737951-3737970 | None:intergenic | 50.0% |
| ! | TTTTCTTGTTGGGGCTGTGG+TGG | - | chr3.1:3737978-3737997 | None:intergenic | 50.0% |
| !! | GAAGGGGAAGGTTTTGTGGT+GGG | - | chr3.1:3737830-3737849 | None:intergenic | 50.0% |
| !! | GGTTAAGTATTGGGCGTCTG+AGG | + | chr3.1:3738556-3738575 | MS.gene78844:CDS | 50.0% |
| AAGAGCCCGTATGCGGTTTG+AGG | + | chr3.1:3738484-3738503 | MS.gene78844:CDS | 55.0% | |
| AATACTGCGACGAGCGTGCT+AGG | + | chr3.1:3738847-3738866 | MS.gene78844:CDS | 55.0% | |
| AGAAAGCGGCCGCATTGGAT+TGG | + | chr3.1:3738512-3738531 | MS.gene78844:CDS | 55.0% | |
| AGACAAGAAAGCGGCCGCAT+TGG | + | chr3.1:3738507-3738526 | MS.gene78844:CDS | 55.0% | |
| AGCAAAGAAGAACCGGGCGT+CGG | + | chr3.1:3738601-3738620 | MS.gene78844:CDS | 55.0% | |
| AGCCGCGTCTGATCTGAGTA+TGG | + | chr3.1:3740007-3740026 | MS.gene78844:intron | 55.0% | |
| ATAGGCGGGCCAATCCAATG+CGG | - | chr3.1:3738524-3738543 | None:intergenic | 55.0% | |
| ATGTGCCCTCCAGTACATCC+TGG | + | chr3.1:3737735-3737754 | MS.gene78844:CDS | 55.0% | |
| CGCGTCTGATCTGAGTATGG+AGG | + | chr3.1:3740010-3740029 | MS.gene78844:intron | 55.0% | |
| CTCTGGTGAGGGAAGGAGTT+AGG | - | chr3.1:3739409-3739428 | None:intergenic | 55.0% | |
| CTTCTAGCCAGGGTTCACCT+GGG | + | chr3.1:3737637-3737656 | MS.gene78844:CDS | 55.0% | |
| CTTGGCTGCTAACTACCGGA+AGG | + | chr3.1:3740660-3740679 | MS.gene78844:CDS | 55.0% | |
| GAAAGAGCAAGGGCAACAGC+AGG | + | chr3.1:3737511-3737530 | MS.gene78844:CDS | 55.0% | |
| GCCTTATCCGGTAGATGAGC+AGG | + | chr3.1:3740945-3740964 | MS.gene78844:CDS | 55.0% | |
| GGAAGGAAGGTCCCATAAGG+AGG | - | chr3.1:3737777-3737796 | None:intergenic | 55.0% | |
| GGAGGAAGGAAGGTCCCATA+AGG | - | chr3.1:3737780-3737799 | None:intergenic | 55.0% | |
| GGAGGATGCATTCACACTGG+TGG | + | chr3.1:3738629-3738648 | MS.gene78844:CDS | 55.0% | |
| GGGCACATGTAAGTGGGATG+AGG | - | chr3.1:3737723-3737742 | None:intergenic | 55.0% | |
| TAGCACGCTCGTCGCAGTAT+TGG | - | chr3.1:3738848-3738867 | None:intergenic | 55.0% | |
| TAGTGTAGCTGCTCCTGCGA+CGG | + | chr3.1:3737671-3737690 | MS.gene78844:CDS | 55.0% | |
| TCTTCTAGCCAGGGTTCACC+TGG | + | chr3.1:3737636-3737655 | MS.gene78844:CDS | 55.0% | |
| TGCATCCAACCATCTGTCCG+CGG | + | chr3.1:3739750-3739769 | MS.gene78844:intron | 55.0% | |
| TTTAGGCAAGCCCAGGCTCA+AGG | + | chr3.1:3740880-3740899 | MS.gene78844:CDS | 55.0% | |
| ! | AGGAGCAGCTACACTAGCCT+GGG | - | chr3.1:3737667-3737686 | None:intergenic | 55.0% |
| ! | AGGAGCAGCTGGCTCAGTTT+AGG | + | chr3.1:3740863-3740882 | MS.gene78844:CDS | 55.0% |
| ! | GTTGTTGTTGGGGAAGGGGA+AGG | - | chr3.1:3737842-3737861 | None:intergenic | 55.0% |
| ! | TGGGGAAGGGGAAGGTTTTG+TGG | - | chr3.1:3737834-3737853 | None:intergenic | 55.0% |
| !! | AAGAACCGGGCGTCGGAAAA+GGG | + | chr3.1:3738608-3738627 | MS.gene78844:CDS | 55.0% |
| !! | GCGCTGGTTTAGGCTCTTTC+AGG | + | chr3.1:3738283-3738302 | MS.gene78844:CDS | 55.0% |
| !! | GGAAGGGGAAGGTTTTGTGG+TGG | - | chr3.1:3737831-3737850 | None:intergenic | 55.0% |
| CAGGAGCAGCTACACTAGCC+TGG | - | chr3.1:3737668-3737687 | None:intergenic | 60.0% | |
| CTGAGCTGACGCCAGAGATG+CGG | + | chr3.1:3740743-3740762 | MS.gene78844:CDS | 60.0% | |
| GCAAGGGCAACAGCAGGAAG+CGG | + | chr3.1:3737517-3737536 | MS.gene78844:CDS | 60.0% | |
| GGCTCAGTTTAGGCAAGCCC+AGG | + | chr3.1:3740873-3740892 | MS.gene78844:CDS | 60.0% | |
| GTATGACTGGCAGCTTGCCG+AGG | + | chr3.1:3740537-3740556 | MS.gene78844:CDS | 60.0% | |
| TGAGCTGACGCCAGAGATGC+GGG | + | chr3.1:3740744-3740763 | MS.gene78844:CDS | 60.0% | |
| ! | AGCAGCTACACTAGCCTGGG+AGG | - | chr3.1:3737664-3737683 | None:intergenic | 60.0% |
| ! | ATCCTCCCTTTTCCGACGCC+CGG | - | chr3.1:3738616-3738635 | None:intergenic | 60.0% |
| ! | CTTAGTGGACGCAGCGACAG+AGG | + | chr3.1:3737551-3737570 | MS.gene78844:CDS | 60.0% |
| ! | TTGGGCGTCTGAGGCGTTCA+AGG | + | chr3.1:3738565-3738584 | MS.gene78844:CDS | 60.0% |
| !! | ACGCTCGTCGCAGTATTGGC+CGG | - | chr3.1:3738844-3738863 | None:intergenic | 60.0% |
| !! | GAAGAACCGGGCGTCGGAAA+AGG | + | chr3.1:3738607-3738626 | MS.gene78844:CDS | 60.0% |
| !! | GCTTCAGCAGCCGGTTTGCA+AGG | - | chr3.1:3738188-3738207 | None:intergenic | 60.0% |
| !! | TGAAGAGGGTGGTGGAGAGC+TGG | + | chr3.1:3738004-3738023 | MS.gene78844:CDS | 60.0% |
| AAGCGGCGCACTAGTGTGGG+AGG | - | chr3.1:3740908-3740927 | None:intergenic | 65.0% | |
| AGCGGCGCACTAGTGTGGGA+GGG | - | chr3.1:3740907-3740926 | None:intergenic | 65.0% | |
| CGCATCTCTGGCGTCAGCTC+AGG | - | chr3.1:3740745-3740764 | None:intergenic | 65.0% | |
| GACGGCTTCTGCTCCTGCGA+CGG | + | chr3.1:3737689-3737708 | MS.gene78844:CDS | 65.0% | |
| GTGGGAGGGACCTTGAGCCT+GGG | - | chr3.1:3740893-3740912 | None:intergenic | 65.0% | |
| TGAGGAGCAGAAGCCGTCGC+AGG | - | chr3.1:3737705-3737724 | None:intergenic | 65.0% | |
| TGGCGTCAGCTCAGGCTGCT+GGG | - | chr3.1:3740737-3740756 | None:intergenic | 65.0% | |
| TGTGGGAGGGACCTTGAGCC+TGG | - | chr3.1:3740894-3740913 | None:intergenic | 65.0% | |
| ! | ACACTAGCCTGGGAGGACCC+AGG | - | chr3.1:3737657-3737676 | None:intergenic | 65.0% |
| ! | CGAGCGTGCTAGGAGTGTGC+AGG | + | chr3.1:3738857-3738876 | MS.gene78844:CDS | 65.0% |
| ! | CGGAGAGCACGCTGAGCGTA+TGG | + | chr3.1:3738664-3738683 | MS.gene78844:CDS | 65.0% |
| !! | AACCGGGCGTCGGAAAAGGG+AGG | + | chr3.1:3738611-3738630 | MS.gene78844:CDS | 65.0% |
| CGTCAGCTCAGGCTGCTGGG+AGG | - | chr3.1:3740734-3740753 | None:intergenic | 70.0% | |
| CTGGCGTCAGCTCAGGCTGC+TGG | - | chr3.1:3740738-3740757 | None:intergenic | 70.0% | |
| GCAGGAGCAGAAGCCGTCGC+AGG | - | chr3.1:3737687-3737706 | None:intergenic | 70.0% | |
| GGGAGGACCCAGGTGAACCC+TGG | - | chr3.1:3737647-3737666 | None:intergenic | 70.0% | |
| GGGTTCACCTGGGTCCTCCC+AGG | + | chr3.1:3737647-3737666 | MS.gene78844:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 3737492 | 3740993 | 3737492 | ID=MS.gene78844 |
| chr3.1 | mRNA | 3737492 | 3740993 | 3737492 | ID=MS.gene78844.t1;Parent=MS.gene78844 |
| chr3.1 | exon | 3737492 | 3737824 | 3737492 | ID=MS.gene78844.t1.exon1;Parent=MS.gene78844.t1 |
| chr3.1 | CDS | 3737492 | 3737824 | 3737492 | ID=cds.MS.gene78844.t1;Parent=MS.gene78844.t1 |
| chr3.1 | exon | 3737984 | 3738102 | 3737984 | ID=MS.gene78844.t1.exon2;Parent=MS.gene78844.t1 |
| chr3.1 | CDS | 3737984 | 3738102 | 3737984 | ID=cds.MS.gene78844.t1;Parent=MS.gene78844.t1 |
| chr3.1 | exon | 3738178 | 3738304 | 3738178 | ID=MS.gene78844.t1.exon3;Parent=MS.gene78844.t1 |
| chr3.1 | CDS | 3738178 | 3738304 | 3738178 | ID=cds.MS.gene78844.t1;Parent=MS.gene78844.t1 |
| chr3.1 | exon | 3738395 | 3738685 | 3738395 | ID=MS.gene78844.t1.exon4;Parent=MS.gene78844.t1 |
| chr3.1 | CDS | 3738395 | 3738685 | 3738395 | ID=cds.MS.gene78844.t1;Parent=MS.gene78844.t1 |
| chr3.1 | exon | 3738777 | 3738878 | 3738777 | ID=MS.gene78844.t1.exon5;Parent=MS.gene78844.t1 |
| chr3.1 | CDS | 3738777 | 3738878 | 3738777 | ID=cds.MS.gene78844.t1;Parent=MS.gene78844.t1 |
| chr3.1 | exon | 3740532 | 3740993 | 3740532 | ID=MS.gene78844.t1.exon6;Parent=MS.gene78844.t1 |
| chr3.1 | CDS | 3740532 | 3740993 | 3740532 | ID=cds.MS.gene78844.t1;Parent=MS.gene78844.t1 |
| Gene Sequence |
| Protein sequence |
