Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78936.t1 | XP_003593643.1 | 83.7 | 307 | 39 | 1 | 1 | 296 | 1 | 307 | 3.20E-139 | 504.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78936.t1 | Q9QYJ3 | 40.5 | 306 | 166 | 8 | 1 | 296 | 1 | 300 | 6.3e-51 | 202.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78936.t1 | A2Q503 | 83.7 | 307 | 39 | 1 | 1 | 296 | 1 | 307 | 2.3e-139 | 504.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049825 | MS.gene78936 | 0.808239 | 3.41E-50 | -1.69E-46 |
| MS.gene055222 | MS.gene78936 | 0.812785 | 3.56E-51 | -1.69E-46 |
| MS.gene057208 | MS.gene78936 | 0.800141 | 1.66E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78936.t1 | MTR_2g014480 | 90.879 | 307 | 17 | 1 | 1 | 296 | 1 | 307 | 0.0 | 558 |
| MS.gene78936.t1 | MTR_2g014470 | 66.557 | 305 | 88 | 6 | 1 | 296 | 1 | 300 | 4.90e-130 | 374 |
| MS.gene78936.t1 | MTR_4g078850 | 63.312 | 308 | 98 | 6 | 1 | 296 | 1 | 305 | 1.57e-126 | 365 |
| MS.gene78936.t1 | MTR_4g015840 | 60.131 | 306 | 106 | 5 | 1 | 296 | 1 | 300 | 1.22e-118 | 345 |
| MS.gene78936.t1 | MTR_2g090705 | 59.136 | 301 | 113 | 4 | 1 | 296 | 1 | 296 | 2.75e-115 | 336 |
| MS.gene78936.t1 | MTR_3g108020 | 50.498 | 301 | 130 | 5 | 1 | 296 | 1 | 287 | 7.78e-92 | 276 |
| MS.gene78936.t1 | MTR_4g015840 | 58.095 | 210 | 72 | 5 | 97 | 296 | 20 | 223 | 4.83e-69 | 216 |
| MS.gene78936.t1 | MTR_5g037880 | 48.921 | 139 | 68 | 1 | 158 | 296 | 101 | 236 | 2.77e-40 | 142 |
| MS.gene78936.t1 | MTR_5g037880 | 54.667 | 75 | 27 | 1 | 4 | 71 | 5 | 79 | 7.46e-18 | 82.0 |
| MS.gene78936.t1 | MTR_8g006430 | 30.723 | 332 | 180 | 10 | 5 | 303 | 15 | 329 | 8.45e-32 | 122 |
| MS.gene78936.t1 | MTR_2g006890 | 42.466 | 146 | 80 | 2 | 152 | 296 | 195 | 337 | 5.94e-30 | 117 |
| MS.gene78936.t1 | MTR_3g437840 | 45.600 | 125 | 65 | 2 | 172 | 296 | 2 | 123 | 1.18e-29 | 110 |
| MS.gene78936.t1 | MTR_7g109340 | 31.560 | 282 | 172 | 7 | 5 | 278 | 27 | 295 | 2.65e-29 | 114 |
| MS.gene78936.t1 | MTR_3g088140 | 39.597 | 149 | 86 | 3 | 147 | 294 | 168 | 313 | 1.29e-27 | 110 |
| MS.gene78936.t1 | MTR_3g437850 | 34.673 | 199 | 85 | 5 | 3 | 188 | 1 | 167 | 1.65e-27 | 105 |
| MS.gene78936.t1 | MTR_3g087030 | 62.500 | 72 | 25 | 1 | 4 | 75 | 82 | 151 | 4.88e-20 | 90.1 |
| MS.gene78936.t1 | MTR_7g101070 | 60.000 | 65 | 26 | 0 | 4 | 68 | 358 | 422 | 2.85e-19 | 88.2 |
| MS.gene78936.t1 | MTR_2g104030 | 54.217 | 83 | 34 | 2 | 4 | 86 | 70 | 148 | 4.55e-18 | 84.7 |
| MS.gene78936.t1 | MTR_3g437360 | 52.055 | 73 | 35 | 0 | 3 | 75 | 4 | 76 | 7.41e-18 | 83.2 |
| MS.gene78936.t1 | MTR_5g065860 | 56.250 | 64 | 27 | 1 | 4 | 67 | 48 | 110 | 4.59e-16 | 74.3 |
| MS.gene78936.t1 | MTR_7g112360 | 48.485 | 66 | 31 | 1 | 5 | 67 | 17 | 82 | 2.03e-15 | 72.8 |
| MS.gene78936.t1 | MTR_7g112360 | 48.485 | 66 | 31 | 1 | 5 | 67 | 17 | 82 | 2.13e-15 | 71.6 |
| MS.gene78936.t1 | MTR_5g065160 | 24.791 | 359 | 168 | 12 | 4 | 306 | 76 | 388 | 2.27e-15 | 76.6 |
| MS.gene78936.t1 | MTR_8g022310 | 47.826 | 69 | 31 | 1 | 4 | 67 | 10 | 78 | 3.28e-15 | 73.6 |
| MS.gene78936.t1 | MTR_8g022310 | 47.826 | 69 | 31 | 1 | 4 | 67 | 10 | 78 | 3.31e-15 | 73.6 |
| MS.gene78936.t1 | MTR_8g022310 | 47.826 | 69 | 31 | 1 | 4 | 67 | 10 | 78 | 4.00e-15 | 72.8 |
| MS.gene78936.t1 | MTR_8g022310 | 47.826 | 69 | 31 | 1 | 4 | 67 | 10 | 78 | 4.59e-15 | 73.6 |
| MS.gene78936.t1 | MTR_1g029460 | 48.000 | 75 | 38 | 1 | 3 | 77 | 5 | 78 | 4.90e-15 | 75.5 |
| MS.gene78936.t1 | MTR_3g027580 | 50.685 | 73 | 35 | 1 | 4 | 76 | 89 | 160 | 6.00e-15 | 75.1 |
| MS.gene78936.t1 | MTR_5g012530 | 45.455 | 77 | 40 | 1 | 4 | 78 | 12 | 88 | 6.24e-15 | 75.5 |
| MS.gene78936.t1 | MTR_5g065160 | 26.048 | 334 | 195 | 13 | 4 | 306 | 83 | 395 | 8.06e-15 | 75.1 |
| MS.gene78936.t1 | MTR_1g110310 | 50.704 | 71 | 34 | 1 | 4 | 74 | 16 | 85 | 1.66e-14 | 73.9 |
| MS.gene78936.t1 | MTR_4g085070 | 51.667 | 60 | 26 | 1 | 11 | 67 | 19 | 78 | 4.59e-14 | 68.9 |
| MS.gene78936.t1 | MTR_6g027110 | 44.928 | 69 | 34 | 1 | 3 | 67 | 1 | 69 | 6.12e-14 | 68.2 |
| MS.gene78936.t1 | MTR_2g087660 | 61.972 | 71 | 22 | 1 | 5 | 75 | 14 | 79 | 8.59e-14 | 71.2 |
| MS.gene78936.t1 | MTR_2g087660 | 36.458 | 96 | 58 | 2 | 189 | 284 | 214 | 306 | 2.20e-12 | 67.0 |
| MS.gene78936.t1 | MTR_2g087660 | 61.972 | 71 | 22 | 1 | 5 | 75 | 14 | 79 | 1.20e-13 | 71.2 |
| MS.gene78936.t1 | MTR_2g087660 | 33.913 | 115 | 72 | 3 | 171 | 284 | 195 | 306 | 1.66e-12 | 67.8 |
| MS.gene78936.t1 | MTR_1g029470 | 47.297 | 74 | 38 | 1 | 4 | 77 | 6 | 78 | 1.28e-13 | 70.9 |
| MS.gene78936.t1 | MTR_4g023470 | 50.000 | 72 | 35 | 1 | 5 | 76 | 87 | 157 | 1.31e-13 | 71.2 |
| MS.gene78936.t1 | MTR_5g004570 | 35.659 | 129 | 70 | 5 | 4 | 123 | 6 | 130 | 1.57e-13 | 69.3 |
| MS.gene78936.t1 | MTR_5g065160 | 29.439 | 214 | 106 | 8 | 4 | 214 | 83 | 254 | 1.75e-13 | 70.9 |
| MS.gene78936.t1 | MTR_5g065160 | 29.439 | 214 | 106 | 8 | 4 | 214 | 82 | 253 | 1.76e-13 | 70.9 |
| MS.gene78936.t1 | MTR_7g069480 | 49.275 | 69 | 33 | 1 | 3 | 71 | 26 | 92 | 2.58e-13 | 70.5 |
| MS.gene78936.t1 | MTR_5g035770 | 52.239 | 67 | 31 | 1 | 4 | 70 | 25 | 90 | 3.42e-13 | 70.1 |
| MS.gene78936.t1 | MTR_6g027030 | 44.928 | 69 | 34 | 1 | 3 | 67 | 1 | 69 | 4.99e-13 | 67.4 |
| MS.gene78936.t1 | MTR_3g100330 | 49.254 | 67 | 31 | 2 | 3 | 68 | 68 | 132 | 5.39e-13 | 67.4 |
| MS.gene78936.t1 | MTR_4g050420 | 60.563 | 71 | 23 | 1 | 5 | 75 | 14 | 79 | 2.24e-12 | 67.4 |
| MS.gene78936.t1 | MTR_4g050420 | 35.417 | 96 | 59 | 2 | 189 | 284 | 212 | 304 | 1.84e-11 | 64.7 |
| MS.gene78936.t1 | MTR_1g052110 | 47.692 | 65 | 33 | 1 | 6 | 70 | 40 | 103 | 2.49e-12 | 66.6 |
| MS.gene78936.t1 | MTR_6g026940 | 42.029 | 69 | 36 | 1 | 3 | 67 | 1 | 69 | 5.19e-12 | 63.9 |
| MS.gene78936.t1 | MTR_7g092380 | 46.154 | 65 | 34 | 1 | 6 | 70 | 24 | 87 | 1.17e-11 | 64.3 |
| MS.gene78936.t1 | MTR_6g059870 | 49.231 | 65 | 31 | 1 | 3 | 67 | 65 | 127 | 4.26e-11 | 63.9 |
| MS.gene78936.t1 | MTR_2g435450 | 49.231 | 65 | 31 | 1 | 3 | 67 | 38 | 100 | 6.68e-11 | 62.0 |
| MS.gene78936.t1 | MTR_8g037810 | 47.143 | 70 | 36 | 1 | 5 | 74 | 7 | 75 | 6.80e-11 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78936.t1 | AT2G20560 | 63.455 | 301 | 102 | 4 | 1 | 296 | 1 | 298 | 2.21e-124 | 359 |
| MS.gene78936.t1 | AT4G28480 | 61.981 | 313 | 98 | 7 | 1 | 296 | 1 | 309 | 6.38e-122 | 353 |
| MS.gene78936.t1 | AT3G08910 | 61.279 | 297 | 99 | 5 | 1 | 296 | 1 | 282 | 1.24e-116 | 339 |
| MS.gene78936.t1 | AT5G01390 | 59.016 | 305 | 106 | 6 | 1 | 296 | 1 | 295 | 3.28e-114 | 333 |
| MS.gene78936.t1 | AT5G25530 | 50.625 | 320 | 129 | 7 | 1 | 303 | 1 | 308 | 2.45e-100 | 298 |
| MS.gene78936.t1 | AT5G25530 | 49.390 | 328 | 129 | 8 | 1 | 303 | 1 | 316 | 3.20e-97 | 290 |
| MS.gene78936.t1 | AT4G28480 | 53.974 | 302 | 82 | 6 | 1 | 296 | 1 | 251 | 1.82e-94 | 281 |
| MS.gene78936.t1 | AT1G10350 | 48.397 | 312 | 142 | 5 | 1 | 296 | 1 | 309 | 2.46e-93 | 281 |
| MS.gene78936.t1 | AT1G59725 | 50.495 | 303 | 130 | 7 | 1 | 296 | 1 | 290 | 6.43e-88 | 266 |
| MS.gene78936.t1 | AT3G47940 | 47.734 | 331 | 115 | 9 | 1 | 296 | 1 | 308 | 4.12e-86 | 262 |
| MS.gene78936.t1 | AT5G01390 | 51.342 | 298 | 82 | 7 | 1 | 296 | 1 | 237 | 5.13e-86 | 259 |
| MS.gene78936.t1 | AT5G01390 | 54.455 | 202 | 76 | 4 | 1 | 193 | 1 | 195 | 1.93e-63 | 200 |
| MS.gene78936.t1 | AT5G01390 | 42.953 | 298 | 68 | 7 | 1 | 296 | 1 | 198 | 3.34e-60 | 192 |
| MS.gene78936.t1 | AT2G20550 | 67.361 | 144 | 44 | 1 | 153 | 296 | 105 | 245 | 6.40e-60 | 193 |
| MS.gene78936.t1 | AT2G20550 | 67.361 | 144 | 44 | 1 | 153 | 296 | 105 | 245 | 6.40e-60 | 193 |
| MS.gene78936.t1 | AT1G44160 | 38.857 | 175 | 97 | 3 | 122 | 296 | 151 | 315 | 4.49e-28 | 111 |
| MS.gene78936.t1 | AT1G11040 | 38.217 | 157 | 89 | 3 | 140 | 296 | 246 | 394 | 1.20e-26 | 108 |
| MS.gene78936.t1 | AT3G44110 | 32.226 | 301 | 174 | 8 | 5 | 284 | 15 | 306 | 9.04e-26 | 105 |
| MS.gene78936.t1 | AT3G44110 | 32.013 | 303 | 172 | 8 | 5 | 284 | 15 | 306 | 2.05e-25 | 105 |
| MS.gene78936.t1 | AT5G22060 | 32.692 | 312 | 149 | 11 | 5 | 279 | 15 | 302 | 5.81e-25 | 103 |
| MS.gene78936.t1 | AT3G62600 | 29.740 | 269 | 158 | 8 | 2 | 258 | 24 | 273 | 3.58e-23 | 98.2 |
| MS.gene78936.t1 | AT4G39960 | 53.488 | 86 | 37 | 2 | 4 | 88 | 85 | 168 | 3.38e-20 | 90.9 |
| MS.gene78936.t1 | AT4G39960 | 53.488 | 86 | 37 | 2 | 4 | 88 | 85 | 168 | 3.38e-20 | 90.9 |
| MS.gene78936.t1 | AT2G22360 | 54.651 | 86 | 36 | 2 | 4 | 88 | 86 | 169 | 1.29e-19 | 89.0 |
| MS.gene78936.t1 | AT1G80030 | 54.118 | 85 | 34 | 2 | 4 | 88 | 75 | 154 | 1.36e-19 | 89.4 |
| MS.gene78936.t1 | AT1G80030 | 54.118 | 85 | 34 | 2 | 4 | 88 | 75 | 154 | 1.58e-19 | 89.0 |
| MS.gene78936.t1 | AT1G80030 | 54.118 | 85 | 34 | 2 | 4 | 88 | 75 | 154 | 1.58e-19 | 89.0 |
| MS.gene78936.t1 | AT1G80030 | 54.118 | 85 | 34 | 2 | 4 | 88 | 75 | 154 | 1.58e-19 | 89.0 |
| MS.gene78936.t1 | AT3G17830 | 51.163 | 86 | 36 | 2 | 2 | 85 | 61 | 142 | 4.45e-18 | 84.7 |
| MS.gene78936.t1 | AT2G41000 | 43.333 | 90 | 45 | 2 | 3 | 88 | 2 | 89 | 9.47e-17 | 77.8 |
| MS.gene78936.t1 | AT2G41000 | 43.333 | 90 | 45 | 2 | 3 | 88 | 2 | 89 | 2.02e-16 | 76.3 |
| MS.gene78936.t1 | AT5G48030 | 52.778 | 72 | 33 | 1 | 4 | 75 | 94 | 164 | 2.16e-16 | 79.7 |
| MS.gene78936.t1 | AT1G59980 | 50.725 | 69 | 33 | 1 | 6 | 74 | 25 | 92 | 3.84e-16 | 78.6 |
| MS.gene78936.t1 | AT1G59980 | 50.725 | 69 | 33 | 1 | 6 | 74 | 25 | 92 | 5.91e-16 | 78.2 |
| MS.gene78936.t1 | AT5G03160 | 52.308 | 65 | 31 | 0 | 4 | 68 | 370 | 434 | 9.39e-16 | 77.8 |
| MS.gene78936.t1 | AT1G68370 | 53.521 | 71 | 32 | 1 | 4 | 74 | 17 | 86 | 2.56e-15 | 76.3 |
| MS.gene78936.t1 | AT5G16650 | 55.224 | 67 | 29 | 1 | 4 | 70 | 11 | 76 | 5.39e-15 | 72.0 |
| MS.gene78936.t1 | AT1G56300 | 50.000 | 66 | 30 | 1 | 5 | 67 | 14 | 79 | 5.78e-15 | 70.5 |
| MS.gene78936.t1 | AT1G56300 | 50.000 | 66 | 30 | 1 | 5 | 67 | 14 | 79 | 6.95e-15 | 71.2 |
| MS.gene78936.t1 | AT5G16650 | 55.224 | 67 | 29 | 1 | 4 | 70 | 11 | 76 | 7.06e-15 | 70.5 |
| MS.gene78936.t1 | AT2G21510 | 50.000 | 74 | 36 | 1 | 4 | 77 | 6 | 78 | 7.91e-15 | 74.3 |
| MS.gene78936.t1 | AT2G21510 | 50.000 | 74 | 36 | 1 | 4 | 77 | 6 | 78 | 7.91e-15 | 74.3 |
| MS.gene78936.t1 | AT2G21510 | 50.000 | 74 | 36 | 1 | 4 | 77 | 6 | 78 | 8.51e-15 | 74.3 |
| MS.gene78936.t1 | AT2G21510 | 50.000 | 74 | 36 | 1 | 4 | 77 | 6 | 78 | 8.51e-15 | 74.3 |
| MS.gene78936.t1 | AT2G21510 | 50.000 | 74 | 36 | 1 | 4 | 77 | 6 | 78 | 1.01e-14 | 73.9 |
| MS.gene78936.t1 | AT5G06910 | 50.769 | 65 | 31 | 1 | 6 | 70 | 31 | 94 | 1.54e-13 | 70.1 |
| MS.gene78936.t1 | AT2G33735 | 46.154 | 65 | 34 | 1 | 4 | 68 | 22 | 85 | 1.87e-13 | 66.2 |
| MS.gene78936.t1 | AT2G33735 | 46.154 | 65 | 34 | 1 | 4 | 68 | 22 | 85 | 1.87e-13 | 66.2 |
| MS.gene78936.t1 | AT2G35720 | 44.156 | 77 | 41 | 1 | 4 | 78 | 15 | 91 | 6.22e-13 | 69.3 |
| MS.gene78936.t1 | AT4G39150 | 44.595 | 74 | 40 | 1 | 4 | 77 | 6 | 78 | 9.18e-13 | 68.2 |
| MS.gene78936.t1 | AT4G39150 | 44.595 | 74 | 40 | 1 | 4 | 77 | 6 | 78 | 9.18e-13 | 68.2 |
| MS.gene78936.t1 | AT4G39150 | 44.595 | 74 | 40 | 1 | 4 | 77 | 6 | 78 | 9.18e-13 | 68.2 |
| MS.gene78936.t1 | AT1G24120 | 45.946 | 74 | 39 | 1 | 4 | 77 | 20 | 92 | 1.12e-12 | 68.6 |
| MS.gene78936.t1 | AT1G21080 | 36.975 | 119 | 62 | 4 | 4 | 114 | 6 | 119 | 2.07e-12 | 67.4 |
| MS.gene78936.t1 | AT1G21080 | 44.000 | 75 | 41 | 1 | 4 | 78 | 6 | 79 | 2.35e-12 | 67.4 |
| MS.gene78936.t1 | AT1G71000 | 46.970 | 66 | 32 | 1 | 5 | 67 | 9 | 74 | 2.74e-12 | 64.3 |
| MS.gene78936.t1 | AT4G13830 | 43.284 | 67 | 37 | 1 | 3 | 68 | 65 | 131 | 2.90e-12 | 63.9 |
| MS.gene78936.t1 | AT4G13830 | 43.284 | 67 | 37 | 1 | 3 | 68 | 65 | 131 | 3.72e-12 | 64.3 |
| MS.gene78936.t1 | AT3G08970 | 47.826 | 69 | 34 | 1 | 3 | 71 | 26 | 92 | 3.77e-12 | 67.0 |
| MS.gene78936.t1 | AT3G08970 | 47.826 | 69 | 34 | 1 | 3 | 71 | 26 | 92 | 3.77e-12 | 67.0 |
| MS.gene78936.t1 | AT3G12170 | 47.692 | 65 | 33 | 1 | 6 | 70 | 13 | 76 | 4.46e-12 | 65.5 |
| MS.gene78936.t1 | AT1G71000 | 46.970 | 66 | 32 | 1 | 5 | 67 | 9 | 74 | 6.54e-12 | 63.2 |
| MS.gene78936.t1 | AT3G06340 | 35.772 | 123 | 74 | 2 | 3 | 125 | 66 | 183 | 6.60e-12 | 66.6 |
| MS.gene78936.t1 | AT3G06340 | 35.772 | 123 | 74 | 2 | 3 | 125 | 66 | 183 | 6.60e-12 | 66.6 |
| MS.gene78936.t1 | AT3G06340 | 35.772 | 123 | 74 | 2 | 3 | 125 | 66 | 183 | 6.60e-12 | 66.6 |
| MS.gene78936.t1 | AT3G06340 | 35.772 | 123 | 74 | 2 | 3 | 125 | 66 | 183 | 6.60e-12 | 66.6 |
| MS.gene78936.t1 | AT3G12170 | 47.692 | 65 | 33 | 1 | 6 | 70 | 49 | 112 | 7.13e-12 | 65.5 |
| MS.gene78936.t1 | AT5G49060 | 49.254 | 67 | 32 | 1 | 4 | 70 | 99 | 163 | 1.22e-11 | 65.1 |
| MS.gene78936.t1 | AT5G49060 | 49.254 | 67 | 32 | 1 | 4 | 70 | 99 | 163 | 1.22e-11 | 65.1 |
| MS.gene78936.t1 | AT3G14200 | 37.895 | 95 | 46 | 2 | 6 | 87 | 14 | 108 | 1.27e-11 | 63.9 |
| MS.gene78936.t1 | AT4G13830 | 43.284 | 67 | 37 | 1 | 3 | 68 | 65 | 131 | 1.38e-11 | 63.2 |
| MS.gene78936.t1 | AT1G28210 | 29.108 | 213 | 104 | 8 | 4 | 214 | 48 | 215 | 2.77e-11 | 64.3 |
| MS.gene78936.t1 | AT1G28210 | 29.108 | 213 | 104 | 8 | 4 | 214 | 48 | 215 | 2.88e-11 | 64.3 |
| MS.gene78936.t1 | AT1G28210 | 29.108 | 213 | 104 | 8 | 4 | 214 | 48 | 215 | 3.17e-11 | 63.9 |
| MS.gene78936.t1 | AT4G19570 | 50.000 | 70 | 33 | 1 | 4 | 73 | 66 | 133 | 3.68e-11 | 63.9 |
| MS.gene78936.t1 | AT1G76700 | 44.595 | 74 | 40 | 1 | 4 | 77 | 6 | 78 | 3.80e-11 | 63.9 |
| MS.gene78936.t1 | AT5G37750 | 44.048 | 84 | 43 | 2 | 4 | 85 | 70 | 151 | 6.48e-11 | 62.0 |
| MS.gene78936.t1 | AT1G72416 | 36.364 | 88 | 45 | 2 | 4 | 80 | 5 | 92 | 7.87e-11 | 60.8 |
| MS.gene78936.t1 | AT3G57340 | 46.269 | 67 | 34 | 1 | 4 | 70 | 113 | 177 | 9.19e-11 | 62.4 |
| MS.gene78936.t1 | AT3G57340 | 46.269 | 67 | 34 | 1 | 4 | 70 | 113 | 177 | 9.19e-11 | 62.4 |
Find 69 sgRNAs with CRISPR-Local
Find 160 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGTTGTTCATTTCCTTTCTC+TGG | 0.197269 | 5.3:+18614754 | None:intergenic |
| TTTGGATTACTATGAGATTT+TGG | 0.205034 | 5.3:-18616546 | MS.gene78936:CDS |
| AGTGAAGGATTCTTGGAAAT+TGG | 0.240930 | 5.3:+18614497 | None:intergenic |
| TTATTGTCAGGATTCTTATC+AGG | 0.253732 | 5.3:+18616455 | None:intergenic |
| ACCTTCTGCCATCGTGAGTT+TGG | 0.279108 | 5.3:+18615484 | None:intergenic |
| ACCCTTCAGTGAAGGATTCT+TGG | 0.281441 | 5.3:+18614490 | None:intergenic |
| AAATATGCCATCTGCACTTC+TGG | 0.292239 | 5.3:+18615449 | None:intergenic |
| AATCCAACCAGGTTGGAAAA+AGG | 0.322008 | 5.3:-18614794 | MS.gene78936:CDS |
| CCATCGTGAGTTTGGAAGTA+TGG | 0.328417 | 5.3:+18615492 | None:intergenic |
| TCGTGGGTGTCCAGGTCTTT+TGG | 0.336631 | 5.3:-18615334 | MS.gene78936:CDS |
| CTTATCAGGGTGCCATTTCA+TGG | 0.338061 | 5.3:+18616469 | None:intergenic |
| TACAAGACAAGGTAATGATT+TGG | 0.349376 | 5.3:-18614674 | MS.gene78936:CDS |
| CTCACGATGGCAGAAGGTTT+AGG | 0.365048 | 5.3:-18615479 | MS.gene78936:CDS |
| CACCTTCCAACTTACTACTT+TGG | 0.365824 | 5.3:-18614599 | MS.gene78936:CDS |
| AGCCTTGAGGAACTTTATAA+AGG | 0.373517 | 5.3:-18615217 | MS.gene78936:CDS |
| GGGCGGCGGCTGCAGAGGCA+TGG | 0.376556 | 5.3:-18615379 | MS.gene78936:CDS |
| TGGATCAATTCCATTGTCTA+TGG | 0.376750 | 5.3:+18614555 | None:intergenic |
| GCCGGCAACCACTTCTTCAT+AGG | 0.383100 | 5.3:+18614531 | None:intergenic |
| GTTGTTCATTTCCTTTCTCT+GGG | 0.397871 | 5.3:+18614755 | None:intergenic |
| TTCCAACTTACTACTTTGGA+TGG | 0.408557 | 5.3:-18614595 | MS.gene78936:CDS |
| ATAGAAAACTTGCCATGAAA+TGG | 0.412382 | 5.3:-18616481 | MS.gene78936:CDS |
| GGCGGCGGCTGCAGAGGCAT+GGG | 0.419490 | 5.3:-18615378 | MS.gene78936:CDS |
| TCAGCATCATTCTTATTGTC+AGG | 0.435149 | 5.3:+18616443 | None:intergenic |
| ATATCTGCAGCAATGACATT+TGG | 0.437256 | 5.3:+18614733 | None:intergenic |
| ATGGGAGGTGCCTTGCGTCT+TGG | 0.439334 | 5.3:+18615259 | None:intergenic |
| TCCTATGAAGAAGTGGTTGC+CGG | 0.441137 | 5.3:-18614532 | MS.gene78936:CDS |
| AGAGCAATTTATGATCAGTA+TGG | 0.447319 | 5.3:-18615564 | MS.gene78936:CDS |
| GGAATGGGAATGAGGGGCGG+CGG | 0.451910 | 5.3:-18615393 | MS.gene78936:intron |
| ATGAGGGGCGGCGGCTGCAG+AGG | 0.461247 | 5.3:-18615384 | MS.gene78936:intron |
| AATATGCCATCTGCACTTCT+GGG | 0.462504 | 5.3:+18615450 | None:intergenic |
| TATTGTCAGGATTCTTATCA+GGG | 0.462954 | 5.3:+18616456 | None:intergenic |
| TACATATACCTCATATGCTT+CGG | 0.471997 | 5.3:+18616400 | None:intergenic |
| AAAGTAGTGGAAGATGGGTT+TGG | 0.472595 | 5.3:-18616564 | None:intergenic |
| ACTCATATCCGAAGCATATG+AGG | 0.475266 | 5.3:-18616408 | MS.gene78936:intron |
| AAAATCACTTTCCCAGAGAA+AGG | 0.487524 | 5.3:-18614766 | MS.gene78936:CDS |
| GAGGTCAGTCGTGGGTGTCC+AGG | 0.495164 | 5.3:-18615342 | MS.gene78936:CDS |
| ATTGTTAGTATTTCCTCCAC+AGG | 0.497108 | 5.3:+18614820 | None:intergenic |
| GTCCATCCAAAGTAGTAAGT+TGG | 0.505940 | 5.3:+18614593 | None:intergenic |
| TTCCAAGAATCCTTCACTGA+AGG | 0.513002 | 5.3:-18614492 | None:intergenic |
| GGGAAATTGCATATGCAAGC+GGG | 0.532622 | 5.3:-18615168 | MS.gene78936:intron |
| AAGAAGTGGTTGCCGGCGAA+AGG | 0.544486 | 5.3:-18614525 | MS.gene78936:CDS |
| CACAATGTATTTACAAGACA+AGG | 0.557753 | 5.3:-18614685 | MS.gene78936:CDS |
| AATTCCATTGTCTATGGCAA+TGG | 0.561820 | 5.3:+18614561 | None:intergenic |
| TGATCCATCCTATGAAGAAG+TGG | 0.566754 | 5.3:-18614539 | MS.gene78936:CDS |
| TGTCTTGTAAATACATTGTG+AGG | 0.569329 | 5.3:+18614688 | None:intergenic |
| CAATTGAAATCCAACCAGGT+TGG | 0.577345 | 5.3:-18614801 | MS.gene78936:CDS |
| TCCAAACTCACGATGGCAGA+AGG | 0.578141 | 5.3:-18615485 | MS.gene78936:CDS |
| GCAACCACTTCTTCATAGGA+TGG | 0.578289 | 5.3:+18614535 | None:intergenic |
| GCTGCACTGTCACCTGCTGT+AGG | 0.578443 | 5.3:+18615516 | None:intergenic |
| CTAAGATTACCCTTCAGTGA+AGG | 0.579238 | 5.3:+18614482 | None:intergenic |
| CTGACCATTGCCATAGACAA+TGG | 0.580577 | 5.3:-18614565 | MS.gene78936:CDS |
| TTCAATCCCAGAAGTGCAGA+TGG | 0.585321 | 5.3:-18615456 | MS.gene78936:CDS |
| TAAAGTTCCTCAAGGCTGCA+AGG | 0.586456 | 5.3:+18615223 | None:intergenic |
| ACCGCATGAGAGGTCAGTCG+TGG | 0.586762 | 5.3:-18615351 | MS.gene78936:CDS |
| CATGGGCATGACCGCATGAG+AGG | 0.587217 | 5.3:-18615361 | MS.gene78936:CDS |
| TACCTTTATAAAGTTCCTCA+AGG | 0.588311 | 5.3:+18615215 | None:intergenic |
| TAAATTGCCTTGCAGCCTTG+AGG | 0.591013 | 5.3:-18615230 | MS.gene78936:CDS |
| CTTACTACTTTGGATGGACG+AGG | 0.593609 | 5.3:-18614589 | MS.gene78936:CDS |
| CAGCAAAACTGTACCTGTGG+AGG | 0.596250 | 5.3:-18614833 | MS.gene78936:CDS |
| AAATTGGCATATCCTTTCGC+CGG | 0.603016 | 5.3:+18614513 | None:intergenic |
| CAAAAGATATTACTTGCAGA+AGG | 0.606997 | 5.3:-18614643 | MS.gene78936:CDS |
| ATCCAAAGTAGTAAGTTGGA+AGG | 0.613336 | 5.3:+18614597 | None:intergenic |
| AGGGAAATTGCATATGCAAG+CGG | 0.628782 | 5.3:-18615169 | MS.gene78936:CDS |
| CTAACAATTGAAATCCAACC+AGG | 0.633352 | 5.3:-18614805 | MS.gene78936:CDS |
| GAGTCAAGCTCCAAGACGCA+AGG | 0.642529 | 5.3:-18615269 | MS.gene78936:CDS |
| CCGCATGAGAGGTCAGTCGT+GGG | 0.647107 | 5.3:-18615350 | MS.gene78936:CDS |
| TTGCAGCAAAACTGTACCTG+TGG | 0.665223 | 5.3:-18614836 | MS.gene78936:intron |
| CCCACGACTGACCTCTCATG+CGG | 0.701980 | 5.3:+18615350 | None:intergenic |
| CCATACTTCCAAACTCACGA+TGG | 0.727422 | 5.3:-18615492 | MS.gene78936:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAGGAAAAAATTGAAAATTG+AGG | + | chr5.3:18614962-18614981 | None:intergenic | 20.0% |
| !! | ATAAAATGTAGTTACAAAGT+TGG | + | chr5.3:18616078-18616097 | None:intergenic | 20.0% |
| !!! | AAATTGAAAATTGAGGATTT+TGG | + | chr5.3:18614955-18614974 | None:intergenic | 20.0% |
| !!! | ATTGAAATTTTACTGAATGA+TGG | + | chr5.3:18615318-18615337 | None:intergenic | 20.0% |
| !!! | TTTTTATTTTGGTAAAACCA+AGG | + | chr5.3:18615211-18615230 | None:intergenic | 20.0% |
| ! | AGTTTCAATACATTTCTAAC+TGG | - | chr5.3:18616012-18616031 | MS.gene78936:intron | 25.0% |
| ! | ATTGATCTTAGTTACTTCAA+AGG | - | chr5.3:18615156-18615175 | MS.gene78936:intron | 25.0% |
| ! | CTTGTTGAGTAATGTTATAA+GGG | - | chr5.3:18615266-18615285 | MS.gene78936:CDS | 25.0% |
| ! | GGAAAAACATATCTTATGAT+AGG | - | chr5.3:18615121-18615140 | MS.gene78936:intron | 25.0% |
| ! | GTAACTAAGATCAATTTAAG+AGG | + | chr5.3:18615151-18615170 | None:intergenic | 25.0% |
| ! | GTTTAATTGCTACAAAACTA+TGG | - | chr5.3:18614691-18614710 | MS.gene78936:CDS | 25.0% |
| ! | TGATATGAATTAAAAAGCCA+GGG | + | chr5.3:18615916-18615935 | None:intergenic | 25.0% |
| ! | TTGATATGAATTAAAAAGCC+AGG | + | chr5.3:18615917-18615936 | None:intergenic | 25.0% |
| !! | ACTTGTTGAGTAATGTTATA+AGG | - | chr5.3:18615265-18615284 | MS.gene78936:CDS | 25.0% |
| !! | ATATGTTTTTCCATATACCA+CGG | + | chr5.3:18615113-18615132 | None:intergenic | 25.0% |
| !! | TCTGACTTAGTATATTGATT+TGG | - | chr5.3:18615428-18615447 | MS.gene78936:intron | 25.0% |
| !! | TTTGGATTACTATGAGATTT+TGG | - | chr5.3:18614500-18614519 | MS.gene78936:CDS | 25.0% |
| !!! | AAAATTGAGGATTTTGGTAA+GGG | + | chr5.3:18614949-18614968 | None:intergenic | 25.0% |
| !!! | ATTATCTTGTTTCTCTGTTT+TGG | - | chr5.3:18614761-18614780 | MS.gene78936:CDS | 25.0% |
| !!! | ATTTTTGGCAAAGATGTATT+TGG | - | chr5.3:18615739-18615758 | MS.gene78936:intron | 25.0% |
| !!! | CAAGGCAATTTATTTTCAAT+GGG | + | chr5.3:18615808-18615827 | None:intergenic | 25.0% |
| !!! | GCACACAATTCTTTTTATTT+TGG | + | chr5.3:18615222-18615241 | None:intergenic | 25.0% |
| AAAATTCTTTGACCCTTCTT+AGG | + | chr5.3:18614908-18614927 | None:intergenic | 30.0% | |
| AAATTCTTTGACCCTTCTTA+GGG | + | chr5.3:18614907-18614926 | None:intergenic | 30.0% | |
| ACATTCAGATTGGATAATGA+AGG | + | chr5.3:18614981-18615000 | None:intergenic | 30.0% | |
| AGAGCAATTTATGATCAGTA+TGG | - | chr5.3:18615482-18615501 | MS.gene78936:CDS | 30.0% | |
| ATAGAAAACTTGCCATGAAA+TGG | - | chr5.3:18614565-18614584 | MS.gene78936:CDS | 30.0% | |
| CAAAAAGATGAAGATCTCAA+GGG | - | chr5.3:18615858-18615877 | MS.gene78936:intron | 30.0% | |
| CAAAAGATATTACTTGCAGA+AGG | - | chr5.3:18616403-18616422 | MS.gene78936:intron | 30.0% | |
| CACAATGTATTTACAAGACA+AGG | - | chr5.3:18616361-18616380 | MS.gene78936:intron | 30.0% | |
| GATATGAATTAAAAAGCCAG+GGG | + | chr5.3:18615915-18615934 | None:intergenic | 30.0% | |
| GATGGAAAATAAGTACAACA+AGG | + | chr5.3:18615300-18615319 | None:intergenic | 30.0% | |
| TACAAGACAAGGTAATGATT+TGG | - | chr5.3:18616372-18616391 | MS.gene78936:intron | 30.0% | |
| TACAATCAGTGATATACAGT+CGG | - | chr5.3:18614865-18614884 | MS.gene78936:intron | 30.0% | |
| TACATATACCTCATATGCTT+CGG | + | chr5.3:18614649-18614668 | None:intergenic | 30.0% | |
| TACCTTTATAAAGTTCCTCA+AGG | + | chr5.3:18615834-18615853 | None:intergenic | 30.0% | |
| TATTGTCAGGATTCTTATCA+GGG | + | chr5.3:18614593-18614612 | None:intergenic | 30.0% | |
| TGTCTTGTAAATACATTGTG+AGG | + | chr5.3:18616361-18616380 | None:intergenic | 30.0% | |
| TTATTGTCAGGATTCTTATC+AGG | + | chr5.3:18614594-18614613 | None:intergenic | 30.0% | |
| TTCAATACATTTCTAACTGG+CGG | - | chr5.3:18616015-18616034 | MS.gene78936:intron | 30.0% | |
| TTCATTATCCAATCTGAATG+TGG | - | chr5.3:18614980-18614999 | MS.gene78936:intron | 30.0% | |
| ! | TCATAAATTGCTCTCTTTTG+CGG | + | chr5.3:18615476-18615495 | None:intergenic | 30.0% |
| ! | TTTGACTTTCATCCTAAGTA+AGG | - | chr5.3:18615046-18615065 | MS.gene78936:intron | 30.0% |
| !! | AGTATATTGATTTGGCTTCA+TGG | - | chr5.3:18615436-18615455 | MS.gene78936:intron | 30.0% |
| !! | CTGTAGGCATTTCATTTTTA+AGG | + | chr5.3:18615517-18615536 | None:intergenic | 30.0% |
| !! | GAAAATTGAGGATTTTGGTA+AGG | + | chr5.3:18614950-18614969 | None:intergenic | 30.0% |
| !! | GCAAGGCAATTTATTTTCAA+TGG | + | chr5.3:18615809-18615828 | None:intergenic | 30.0% |
| !! | TGTTTACTGTCTTTTGTTTG+AGG | - | chr5.3:18614807-18614826 | MS.gene78936:CDS | 30.0% |
| AAAAATATCGCCAAAAGACC+TGG | + | chr5.3:18615725-18615744 | None:intergenic | 35.0% | |
| AAAAATGAAATGCCTACAGC+AGG | - | chr5.3:18615518-18615537 | MS.gene78936:CDS | 35.0% | |
| AAAATCACTTTCCCAGAGAA+AGG | - | chr5.3:18616280-18616299 | MS.gene78936:intron | 35.0% | |
| AACATGGATAGACAAAGAGT+TGG | + | chr5.3:18615367-18615386 | None:intergenic | 35.0% | |
| AATTCCATTGTCTATGGCAA+TGG | + | chr5.3:18616488-18616507 | None:intergenic | 35.0% | |
| AATTCTTTGACCCTTCTTAG+GGG | + | chr5.3:18614906-18614925 | None:intergenic | 35.0% | |
| ACTGATTGTAGCCATCAAAT+TGG | + | chr5.3:18614855-18614874 | None:intergenic | 35.0% | |
| ACTTGTAGACACACATGAAA+GGG | + | chr5.3:18616156-18616175 | None:intergenic | 35.0% | |
| AGCCTTGAGGAACTTTATAA+AGG | - | chr5.3:18615829-18615848 | MS.gene78936:intron | 35.0% | |
| AGTGAAGGATTCTTGGAAAT+TGG | + | chr5.3:18616552-18616571 | None:intergenic | 35.0% | |
| ATATCTGCAGCAATGACATT+TGG | + | chr5.3:18616316-18616335 | None:intergenic | 35.0% | |
| ATTGTTAGTATTTCCTCCAC+AGG | + | chr5.3:18616229-18616248 | None:intergenic | 35.0% | |
| CAGATTCTGTGAACATTTCA+TGG | + | chr5.3:18615412-18615431 | None:intergenic | 35.0% | |
| CCAAAAAGATGAAGATCTCA+AGG | - | chr5.3:18615857-18615876 | MS.gene78936:intron | 35.0% | |
| CTAACAATTGAAATCCAACC+AGG | - | chr5.3:18616241-18616260 | MS.gene78936:intron | 35.0% | |
| GTTGTTCATTTCCTTTCTCT+GGG | + | chr5.3:18616294-18616313 | None:intergenic | 35.0% | |
| TACTTGTAGACACACATGAA+AGG | + | chr5.3:18616157-18616176 | None:intergenic | 35.0% | |
| TCAGCATCATTCTTATTGTC+AGG | + | chr5.3:18614606-18614625 | None:intergenic | 35.0% | |
| TCTTTGTCTATCCATGTTGT+GGG | - | chr5.3:18615369-18615388 | MS.gene78936:CDS | 35.0% | |
| TGGATCAATTCCATTGTCTA+TGG | + | chr5.3:18616494-18616513 | None:intergenic | 35.0% | |
| TTCCAACTTACTACTTTGGA+TGG | - | chr5.3:18616451-18616470 | MS.gene78936:CDS | 35.0% | |
| ! | ACTGATCATTCATGTTTCTG+AGG | - | chr5.3:18614717-18614736 | MS.gene78936:CDS | 35.0% |
| ! | AGGTCTTTTGGCGATATTTT+TGG | - | chr5.3:18615724-18615743 | MS.gene78936:intron | 35.0% |
| ! | ATCCAAAGTAGTAAGTTGGA+AGG | + | chr5.3:18616452-18616471 | None:intergenic | 35.0% |
| ! | CCTTGAGATCTTCATCTTTT+TGG | + | chr5.3:18615860-18615879 | None:intergenic | 35.0% |
| ! | GGATTACTATGAGATTTTGG+AGG | - | chr5.3:18614503-18614522 | MS.gene78936:CDS | 35.0% |
| ! | GGCATATTTGCAGAAGTTTT+TGG | - | chr5.3:18615611-18615630 | MS.gene78936:intron | 35.0% |
| ! | GTGTTTGAGATCCAATTTGA+TGG | - | chr5.3:18614841-18614860 | MS.gene78936:intron | 35.0% |
| !! | ATATTGATTTGGCTTCATGG+AGG | - | chr5.3:18615439-18615458 | MS.gene78936:intron | 35.0% |
| !! | GGCAATTTATTTTCAATGGG+AGG | + | chr5.3:18615805-18615824 | None:intergenic | 35.0% |
| !!! | GCAGAATGAGAGTTTTTTGT+TGG | - | chr5.3:18615973-18615992 | MS.gene78936:intron | 35.0% |
| AAATAGCGCCACATTCAGAT+TGG | + | chr5.3:18614991-18615010 | None:intergenic | 40.0% | |
| AAATATGCCATCTGCACTTC+TGG | + | chr5.3:18615600-18615619 | None:intergenic | 40.0% | |
| AAATTGGCATATCCTTTCGC+CGG | + | chr5.3:18616536-18616555 | None:intergenic | 40.0% | |
| AATATGCCATCTGCACTTCT+GGG | + | chr5.3:18615599-18615618 | None:intergenic | 40.0% | |
| ACTCATATCCGAAGCATATG+AGG | - | chr5.3:18614638-18614657 | MS.gene78936:CDS | 40.0% | |
| AGGGAAATTGCATATGCAAG+CGG | - | chr5.3:18615877-18615896 | MS.gene78936:intron | 40.0% | |
| ATACAGTCGGATGAAAACTG+AGG | - | chr5.3:18614878-18614897 | MS.gene78936:intron | 40.0% | |
| ATGTAAGCATCATTGGTCCA+GGG | - | chr5.3:18615075-18615094 | MS.gene78936:intron | 40.0% | |
| CAATTGAAATCCAACCAGGT+TGG | - | chr5.3:18616245-18616264 | MS.gene78936:intron | 40.0% | |
| CACCTTCCAACTTACTACTT+TGG | - | chr5.3:18616447-18616466 | MS.gene78936:CDS | 40.0% | |
| CTCTTTGTCTATCCATGTTG+TGG | - | chr5.3:18615368-18615387 | MS.gene78936:CDS | 40.0% | |
| CTTTGTCTATCCATGTTGTG+GGG | - | chr5.3:18615370-18615389 | MS.gene78936:CDS | 40.0% | |
| GGTTGTTCATTTCCTTTCTC+TGG | + | chr5.3:18616295-18616314 | None:intergenic | 40.0% | |
| GTCCATCCAAAGTAGTAAGT+TGG | + | chr5.3:18616456-18616475 | None:intergenic | 40.0% | |
| TAGACACACATGAAAGGGAA+CGG | + | chr5.3:18616151-18616170 | None:intergenic | 40.0% | |
| TCATTCCCATTCCTCCATAA+GGG | + | chr5.3:18615646-18615665 | None:intergenic | 40.0% | |
| TGATCCATCCTATGAAGAAG+TGG | - | chr5.3:18616507-18616526 | MS.gene78936:CDS | 40.0% | |
| TTACATGGCACTCCTTACTT+AGG | + | chr5.3:18615061-18615080 | None:intergenic | 40.0% | |
| TTATGGAGGAATGGGAATGA+GGG | - | chr5.3:18615646-18615665 | MS.gene78936:intron | 40.0% | |
| ! | AATCCAACCAGGTTGGAAAA+AGG | - | chr5.3:18616252-18616271 | MS.gene78936:intron | 40.0% |
| ! | ATCCAACCAGGTTGGAAAAA+GGG | - | chr5.3:18616253-18616272 | MS.gene78936:intron | 40.0% |
| ! | TTTTGCTGCAAACACACATG+CGG | + | chr5.3:18616201-18616220 | None:intergenic | 40.0% |
| !!! | TTTGGCTTTTCAAGCCCTTA+TGG | - | chr5.3:18615629-18615648 | MS.gene78936:intron | 40.0% |
| AAACTGAGGATCCCCTAAGA+AGG | - | chr5.3:18614892-18614911 | MS.gene78936:intron | 45.0% | |
| AACTGAGGATCCCCTAAGAA+GGG | - | chr5.3:18614893-18614912 | MS.gene78936:intron | 45.0% | |
| AGACACACATGAAAGGGAAC+GGG | + | chr5.3:18616150-18616169 | None:intergenic | 45.0% | |
| CATGTAAGCATCATTGGTCC+AGG | - | chr5.3:18615074-18615093 | MS.gene78936:intron | 45.0% | |
| CCATACTTCCAAACTCACGA+TGG | - | chr5.3:18615554-18615573 | MS.gene78936:CDS | 45.0% | |
| CCATCGTGAGTTTGGAAGTA+TGG | + | chr5.3:18615557-18615576 | None:intergenic | 45.0% | |
| CTATCCATGTTGTGGGGAAT+GGG | - | chr5.3:18615376-18615395 | MS.gene78936:CDS | 45.0% | |
| CTCATTCCCATTCCTCCATA+AGG | + | chr5.3:18615647-18615666 | None:intergenic | 45.0% | |
| CTGACCATTGCCATAGACAA+TGG | - | chr5.3:18616481-18616500 | MS.gene78936:CDS | 45.0% | |
| CTGGACCAATGATGCTTACA+TGG | + | chr5.3:18615076-18615095 | None:intergenic | 45.0% | |
| CTTACTACTTTGGATGGACG+AGG | - | chr5.3:18616457-18616476 | MS.gene78936:CDS | 45.0% | |
| CTTATGGAGGAATGGGAATG+AGG | - | chr5.3:18615645-18615664 | MS.gene78936:intron | 45.0% | |
| GAGTGCCATGTAAGCATCAT+TGG | - | chr5.3:18615068-18615087 | MS.gene78936:intron | 45.0% | |
| GCAACCACTTCTTCATAGGA+TGG | + | chr5.3:18616514-18616533 | None:intergenic | 45.0% | |
| GGGAAATTGCATATGCAAGC+GGG | - | chr5.3:18615878-18615897 | MS.gene78936:intron | 45.0% | |
| GTTGCACGTAGATGATACCT+TGG | - | chr5.3:18615191-18615210 | MS.gene78936:CDS | 45.0% | |
| TAAAGTTCCTCAAGGCTGCA+AGG | + | chr5.3:18615826-18615845 | None:intergenic | 45.0% | |
| TAAATTGCCTTGCAGCCTTG+AGG | - | chr5.3:18615816-18615835 | MS.gene78936:intron | 45.0% | |
| TATCCATGTTGTGGGGAATG+GGG | - | chr5.3:18615377-18615396 | MS.gene78936:CDS | 45.0% | |
| TATGGAGGAATGGGAATGAG+GGG | - | chr5.3:18615647-18615666 | MS.gene78936:intron | 45.0% | |
| TCAAGCCCTTATGGAGGAAT+GGG | - | chr5.3:18615638-18615657 | MS.gene78936:intron | 45.0% | |
| TCCTATGAAGAAGTGGTTGC+CGG | - | chr5.3:18616514-18616533 | MS.gene78936:CDS | 45.0% | |
| TCTATCCATGTTGTGGGGAA+TGG | - | chr5.3:18615375-18615394 | MS.gene78936:CDS | 45.0% | |
| TTCAAGCCCTTATGGAGGAA+TGG | - | chr5.3:18615637-18615656 | MS.gene78936:intron | 45.0% | |
| TTGCAGCAAAACTGTACCTG+TGG | - | chr5.3:18616210-18616229 | MS.gene78936:intron | 45.0% | |
| TTTGCTGCAAACACACATGC+GGG | + | chr5.3:18616200-18616219 | None:intergenic | 45.0% | |
| ! | ATCCCTTTTTCCAACCTGGT+TGG | + | chr5.3:18616258-18616277 | None:intergenic | 45.0% |
| ! | GTTTTTCCATATACCACGGC+CGG | + | chr5.3:18615109-18615128 | None:intergenic | 45.0% |
| ! | TTCAATCCCAGAAGTGCAGA+TGG | - | chr5.3:18615590-18615609 | MS.gene78936:intron | 45.0% |
| ! | TTCGATCCCTTTTTCCAACC+TGG | + | chr5.3:18616262-18616281 | None:intergenic | 45.0% |
| !! | CTTATCAGGGTGCCATTTCA+TGG | + | chr5.3:18614580-18614599 | None:intergenic | 45.0% |
| ACCTTCTGCCATCGTGAGTT+TGG | + | chr5.3:18615565-18615584 | None:intergenic | 50.0% | |
| CAGCAAAACTGTACCTGTGG+AGG | - | chr5.3:18616213-18616232 | MS.gene78936:intron | 50.0% | |
| CTCACGATGGCAGAAGGTTT+AGG | - | chr5.3:18615567-18615586 | MS.gene78936:CDS | 50.0% | |
| TCCAAACTCACGATGGCAGA+AGG | - | chr5.3:18615561-18615580 | MS.gene78936:CDS | 50.0% | |
| TTGGTCCAGGGTTTGATCTC+CGG | - | chr5.3:18615087-18615106 | MS.gene78936:intron | 50.0% | |
| !! | GGCTTTTCAAGCCCTTATGG+AGG | - | chr5.3:18615632-18615651 | MS.gene78936:intron | 50.0% |
| AAGAAGTGGTTGCCGGCGAA+AGG | - | chr5.3:18616521-18616540 | MS.gene78936:CDS | 55.0% | |
| CATCCCCATTCCCCACAACA+TGG | + | chr5.3:18615383-18615402 | None:intergenic | 55.0% | |
| GAGTCAAGCTCCAAGACGCA+AGG | - | chr5.3:18615777-18615796 | MS.gene78936:intron | 55.0% | |
| GCCGGCAACCACTTCTTCAT+AGG | + | chr5.3:18616518-18616537 | None:intergenic | 55.0% | |
| TGATCTCCGGCCGTGGTATA+TGG | - | chr5.3:18615100-18615119 | MS.gene78936:intron | 55.0% | |
| ! | TCGTGGGTGTCCAGGTCTTT+TGG | - | chr5.3:18615712-18615731 | MS.gene78936:intron | 55.0% |
| ACCGCATGAGAGGTCAGTCG+TGG | - | chr5.3:18615695-18615714 | MS.gene78936:intron | 60.0% | |
| CATGGGCATGACCGCATGAG+AGG | - | chr5.3:18615685-18615704 | MS.gene78936:intron | 60.0% | |
| CCCACGACTGACCTCTCATG+CGG | + | chr5.3:18615699-18615718 | None:intergenic | 60.0% | |
| CCGCATGAGAGGTCAGTCGT+GGG | - | chr5.3:18615696-18615715 | MS.gene78936:intron | 60.0% | |
| GCGGGTAAATGCTCTTCCCC+TGG | - | chr5.3:18615896-18615915 | MS.gene78936:intron | 60.0% | |
| GCTGCACTGTCACCTGCTGT+AGG | + | chr5.3:18615533-18615552 | None:intergenic | 60.0% | |
| GGAGGAATGGGAATGAGGGG+CGG | - | chr5.3:18615650-18615669 | MS.gene78936:intron | 60.0% | |
| !! | ATGGGAGGTGCCTTGCGTCT+TGG | + | chr5.3:18615790-18615809 | None:intergenic | 60.0% |
| CACGGCCGGAGATCAAACCC+TGG | + | chr5.3:18615095-18615114 | None:intergenic | 65.0% | |
| CAGGGTTTGATCTCCGGCCG+TGG | - | chr5.3:18615093-18615112 | MS.gene78936:intron | 65.0% | |
| GAGGTCAGTCGTGGGTGTCC+AGG | - | chr5.3:18615704-18615723 | MS.gene78936:intron | 65.0% | |
| GGAATGGGAATGAGGGGCGG+CGG | - | chr5.3:18615653-18615672 | MS.gene78936:intron | 65.0% | |
| ATGAGGGGCGGCGGCTGCAG+AGG | - | chr5.3:18615662-18615681 | MS.gene78936:intron | 75.0% | |
| ! | GGCGGCGGCTGCAGAGGCAT+GGG | - | chr5.3:18615668-18615687 | MS.gene78936:intron | 75.0% |
| ! | GGGCGGCGGCTGCAGAGGCA+TGG | - | chr5.3:18615667-18615686 | MS.gene78936:intron | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 18614495 | 18616573 | 18614495 | ID=MS.gene78936 |
| chr5.3 | mRNA | 18614495 | 18616573 | 18614495 | ID=MS.gene78936.t1;Parent=MS.gene78936 |
| chr5.3 | exon | 18616409 | 18616573 | 18616409 | ID=MS.gene78936.t1.exon1;Parent=MS.gene78936.t1 |
| chr5.3 | CDS | 18616409 | 18616573 | 18616409 | ID=cds.MS.gene78936.t1;Parent=MS.gene78936.t1 |
| chr5.3 | exon | 18615443 | 18615607 | 18615443 | ID=MS.gene78936.t1.exon2;Parent=MS.gene78936.t1 |
| chr5.3 | CDS | 18615443 | 18615607 | 18615443 | ID=cds.MS.gene78936.t1;Parent=MS.gene78936.t1 |
| chr5.3 | exon | 18615169 | 18615401 | 18615169 | ID=MS.gene78936.t1.exon3;Parent=MS.gene78936.t1 |
| chr5.3 | CDS | 18615169 | 18615401 | 18615169 | ID=cds.MS.gene78936.t1;Parent=MS.gene78936.t1 |
| chr5.3 | exon | 18614495 | 18614852 | 18614495 | ID=MS.gene78936.t1.exon4;Parent=MS.gene78936.t1 |
| chr5.3 | CDS | 18614495 | 18614852 | 18614495 | ID=cds.MS.gene78936.t1;Parent=MS.gene78936.t1 |
| Gene Sequence |
| Protein sequence |
