Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78953.t1 | XP_003612805.1 | 97.4 | 302 | 8 | 0 | 1 | 302 | 1 | 302 | 3.00E-161 | 577.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78953.t1 | Q9FVR6 | 66.3 | 303 | 92 | 4 | 1 | 301 | 1 | 295 | 2.8e-112 | 406.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78953.t1 | G7KCB8 | 97.4 | 302 | 8 | 0 | 1 | 302 | 1 | 302 | 2.1e-161 | 577.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene052501 | MS.gene78953 | 0.805303 | 1.42E-49 | -1.69E-46 |
| MS.gene052503 | MS.gene78953 | 0.809242 | 2.08E-50 | -1.69E-46 |
| MS.gene052823 | MS.gene78953 | 0.804099 | 2.54E-49 | -1.69E-46 |
| MS.gene052825 | MS.gene78953 | 0.805219 | 1.48E-49 | -1.69E-46 |
| MS.gene056166 | MS.gene78953 | 0.805887 | 1.07E-49 | -1.69E-46 |
| MS.gene058444 | MS.gene78953 | 0.822366 | 2.46E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78953.t1 | MTR_5g029260 | 97.351 | 302 | 8 | 0 | 1 | 302 | 1 | 302 | 0.0 | 589 |
| MS.gene78953.t1 | MTR_3g105660 | 47.706 | 218 | 108 | 3 | 68 | 284 | 55 | 267 | 1.14e-59 | 192 |
| MS.gene78953.t1 | MTR_6g005650 | 91.837 | 49 | 4 | 0 | 118 | 166 | 138 | 186 | 6.05e-22 | 93.6 |
| MS.gene78953.t1 | MTR_7g405800 | 93.617 | 47 | 3 | 0 | 120 | 166 | 73 | 119 | 6.23e-22 | 92.4 |
| MS.gene78953.t1 | MTR_6g009130 | 62.500 | 56 | 21 | 0 | 119 | 174 | 124 | 179 | 7.71e-16 | 74.7 |
| MS.gene78953.t1 | MTR_6g466340 | 87.234 | 47 | 6 | 0 | 122 | 168 | 9 | 55 | 1.26e-14 | 70.5 |
| MS.gene78953.t1 | MTR_6g464960 | 87.234 | 47 | 6 | 0 | 122 | 168 | 9 | 55 | 3.20e-14 | 70.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78953.t1 | AT1G32220 | 66.337 | 303 | 92 | 4 | 1 | 301 | 1 | 295 | 2.74e-146 | 413 |
| MS.gene78953.t1 | AT5G10730 | 46.789 | 218 | 110 | 3 | 68 | 284 | 56 | 268 | 4.35e-55 | 181 |
| MS.gene78953.t1 | AT5G15910 | 47.222 | 216 | 109 | 3 | 70 | 284 | 43 | 254 | 4.44e-51 | 169 |
| MS.gene78953.t1 | AT5G15910 | 46.759 | 216 | 110 | 3 | 70 | 284 | 2 | 213 | 6.29e-51 | 168 |
Find 72 sgRNAs with CRISPR-Local
Find 213 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACTGAGATCAATATGAATT+TGG | 0.138307 | 5.3:-18231024 | None:intergenic |
| GGAGCAGGTGTTGGTAATTT+TGG | 0.162573 | 5.3:+18229381 | MS.gene78953:CDS |
| GATCAGGTTACTTGGATTTC+AGG | 0.214857 | 5.3:+18229999 | MS.gene78953:CDS |
| TCCTGCTTCTGATCTACTTT+TGG | 0.243895 | 5.3:+18231798 | MS.gene78953:CDS |
| GTGACCTGAACTAGGGAATT+TGG | 0.262436 | 5.3:-18231126 | None:intergenic |
| TTAAGACCAGGCTTCATATA+TGG | 0.287107 | 5.3:+18231670 | MS.gene78953:CDS |
| GTCTCAACCCTCGGAGGTTT+TGG | 0.292716 | 5.3:+18230339 | MS.gene78953:CDS |
| GAAGCAGGAAGTGCGCTTAA+TGG | 0.325078 | 5.3:-18231784 | None:intergenic |
| AGATTCCCTTGGATTTAGTT+GGG | 0.330713 | 5.3:+18231716 | MS.gene78953:CDS |
| CATGGATAGATCAGGTTACT+TGG | 0.349750 | 5.3:+18229991 | MS.gene78953:CDS |
| GTAAATGCTGCAAAGGAATA+TGG | 0.364198 | 5.3:+18230411 | MS.gene78953:CDS |
| GTTACAGATGATGACTTCTT+TGG | 0.364428 | 5.3:+18231868 | MS.gene78953:CDS |
| CTATCCAAATTCCCTAGTTC+AGG | 0.367351 | 5.3:+18231122 | MS.gene78953:CDS |
| AACTGGGACGAAGTACTTCC+TGG | 0.372764 | 5.3:+18230303 | MS.gene78953:CDS |
| GAGATTCCCTTGGATTTAGT+TGG | 0.373207 | 5.3:+18231715 | MS.gene78953:CDS |
| TAATATGTAGATTGTAGTCT+TGG | 0.384812 | 5.3:+18229765 | MS.gene78953:intron |
| TTGGGAGGCAATGGGTTTGT+TGG | 0.385926 | 5.3:+18229784 | MS.gene78953:CDS |
| ACTGAGATCAATATGAATTT+GGG | 0.389375 | 5.3:-18231023 | None:intergenic |
| GCTTATGACTTCTATGCCCT+TGG | 0.419174 | 5.3:-18229833 | None:intergenic |
| CTTTCATCGGGGTACTTCAC+AGG | 0.421460 | 5.3:+18231074 | MS.gene78953:CDS |
| TAGAAGTCATAAGCTTAAAC+AGG | 0.429364 | 5.3:+18229842 | MS.gene78953:CDS |
| TAAGACCAGGCTTCATATAT+GGG | 0.441094 | 5.3:+18231671 | MS.gene78953:CDS |
| GATCAAGGAAGCTGCTGATA+AGG | 0.445846 | 5.3:+18231909 | MS.gene78953:CDS |
| GCAGTTAGCTGCAGTTATGC+AGG | 0.452311 | 5.3:+18229360 | MS.gene78953:CDS |
| CTCAGATTCATGGATAGATC+AGG | 0.452914 | 5.3:+18229983 | MS.gene78953:CDS |
| ATTGTAGTCTTGGGAGGCAA+TGG | 0.455853 | 5.3:+18229775 | MS.gene78953:CDS |
| GTCCTGCTTACTCAGATTCA+TGG | 0.463208 | 5.3:+18229973 | MS.gene78953:CDS |
| AATATGTAGATTGTAGTCTT+GGG | 0.479908 | 5.3:+18229766 | MS.gene78953:intron |
| AGCTGCAGTTATGCAGGAGC+AGG | 0.483868 | 5.3:+18229366 | MS.gene78953:CDS |
| ATCAGCCACAACATCTATAG+TGG | 0.490070 | 5.3:-18229415 | None:intergenic |
| GAGACTACTGCAGTAGCTCC+AGG | 0.492058 | 5.3:-18230321 | None:intergenic |
| ATAGAATAGTGACCTGAACT+AGG | 0.499011 | 5.3:-18231134 | None:intergenic |
| CAGTGTTGATGATGTTGCAT+TGG | 0.500479 | 5.3:+18231831 | MS.gene78953:CDS |
| AGGAAGCTGCTGATAAGGTA+AGG | 0.501695 | 5.3:+18231914 | MS.gene78953:CDS |
| TTGTAGTCTTGGGAGGCAAT+GGG | 0.505552 | 5.3:+18229776 | MS.gene78953:CDS |
| ATGAGACGAGGAGAAACAGC+AGG | 0.508541 | 5.3:-18228462 | None:intergenic |
| GGCTGATGTTATAAGCGAAA+AGG | 0.514531 | 5.3:+18229431 | MS.gene78953:CDS |
| GTTGCATTGGCAGTTATCAA+TGG | 0.527638 | 5.3:+18231844 | MS.gene78953:CDS |
| GAACAAATGAGAAAGATTAA+CGG | 0.530717 | 5.3:+18230369 | MS.gene78953:CDS |
| ATCCATGAATCTGAGTAAGC+AGG | 0.531810 | 5.3:-18229975 | None:intergenic |
| GGGTCGTTTGAGAGAGAAAA+CGG | 0.535571 | 5.3:-18228490 | None:intergenic |
| GATTCCCTTGGATTTAGTTG+GGG | 0.537599 | 5.3:+18231717 | MS.gene78953:CDS |
| GCCAAAAGTAGATCAGAAGC+AGG | 0.539884 | 5.3:-18231799 | None:intergenic |
| ATGCAAGGCAGCAGTATCCA+AGG | 0.543594 | 5.3:+18229816 | MS.gene78953:CDS |
| TCAGGTATTGTCTTAAGACC+AGG | 0.551242 | 5.3:+18231658 | MS.gene78953:intron |
| AAAGAGAAAAGCAGAATCTG+AGG | 0.554082 | 5.3:+18231097 | MS.gene78953:CDS |
| GGGCTCCCCAACTAAATCCA+AGG | 0.564003 | 5.3:-18231722 | None:intergenic |
| GCAACATCATCAACACTGAC+AGG | 0.569664 | 5.3:-18231826 | None:intergenic |
| TATGGGAAAAGAAGAGTGGA+TGG | 0.584509 | 5.3:+18231688 | MS.gene78953:CDS |
| GGTAGGTGGAGTGTGAGTGA+AGG | 0.586620 | 5.3:-18228511 | None:intergenic |
| GTAGGTGGAGTGTGAGTGAA+GGG | 0.586862 | 5.3:-18228510 | None:intergenic |
| TGTTGGTTCTGCGATATGCA+AGG | 0.592323 | 5.3:+18229801 | MS.gene78953:CDS |
| AGTTATGCAGGAGCAGGTGT+TGG | 0.603055 | 5.3:+18229372 | MS.gene78953:CDS |
| GGCTCCCCAACTAAATCCAA+GGG | 0.605980 | 5.3:-18231721 | None:intergenic |
| TAGAATAGTGACCTGAACTA+GGG | 0.608853 | 5.3:-18231133 | None:intergenic |
| CTCGCTACCAAAACCTCCGA+GGG | 0.612537 | 5.3:-18230346 | None:intergenic |
| TAACGGCGAGGCTAATGTTG+TGG | 0.613394 | 5.3:+18230386 | MS.gene78953:CDS |
| CATATATGGGAAAAGAAGAG+TGG | 0.616736 | 5.3:+18231684 | MS.gene78953:CDS |
| ATGTAGATTGTAGTCTTGGG+AGG | 0.624281 | 5.3:+18229769 | MS.gene78953:intron |
| ACTGCAGTAGTCTCAACCCT+CGG | 0.629761 | 5.3:+18230330 | MS.gene78953:CDS |
| GGAAGCTGCTGATAAGGTAA+GGG | 0.634099 | 5.3:+18231915 | MS.gene78953:CDS |
| GACGTCCACTATAGATGTTG+TGG | 0.643876 | 5.3:+18229410 | MS.gene78953:CDS |
| CCTCGCTACCAAAACCTCCG+AGG | 0.646053 | 5.3:-18230347 | None:intergenic |
| TGTGGCTGTAAATGCTGCAA+AGG | 0.647873 | 5.3:+18230404 | MS.gene78953:CDS |
| TGCAAGGCAGCAGTATCCAA+GGG | 0.660059 | 5.3:+18229817 | MS.gene78953:CDS |
| CGTTTGAGAGAGAAAACGGT+GGG | 0.661357 | 5.3:-18228486 | None:intergenic |
| ACATCATCAACACTGACAGG+TGG | 0.667644 | 5.3:-18231823 | None:intergenic |
| AAAACGGTGGGAATGAGACG+AGG | 0.678492 | 5.3:-18228474 | None:intergenic |
| TGAGACGAGGAGAAACAGCA+GGG | 0.692443 | 5.3:-18228461 | None:intergenic |
| AATGAGAAAGATTAACGGCG+AGG | 0.694239 | 5.3:+18230374 | MS.gene78953:CDS |
| GCAGTAGTCTCAACCCTCGG+AGG | 0.734128 | 5.3:+18230333 | MS.gene78953:CDS |
| TCGTTTGAGAGAGAAAACGG+TGG | 0.746736 | 5.3:-18228487 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTAAATTTATTTATGGAAT+CGG | + | chr5.3:18230938-18230957 | MS.gene78953:intron | 10.0% |
| !!! | AATGAAAAGTATAAAAAAAA+TGG | - | chr5.3:18229479-18229498 | None:intergenic | 10.0% |
| !!! | ATGAAAAGTATAAAAAAAAT+GGG | - | chr5.3:18229478-18229497 | None:intergenic | 10.0% |
| !!! | TGATTATTTTTTTCATTTTT+TGG | + | chr5.3:18228798-18228817 | MS.gene78953:intron | 10.0% |
| !!! | TTTTTATACTTTTCATTTTT+AGG | + | chr5.3:18229482-18229501 | MS.gene78953:intron | 10.0% |
| !! | AGAATGAAAATCAATTAAAA+AGG | - | chr5.3:18231609-18231628 | None:intergenic | 15.0% |
| !!! | TTTTTTCATTTCTAAATTCT+GGG | + | chr5.3:18228592-18228611 | MS.gene78953:intron | 15.0% |
| !!! | TTTTTTTCATTTTTTGGATT+TGG | + | chr5.3:18228804-18228823 | MS.gene78953:intron | 15.0% |
| !! | AACATAGTGAATTAATTGAT+AGG | + | chr5.3:18229638-18229657 | MS.gene78953:intron | 20.0% |
| !! | ACTAAAATGTAAAGAAACAT+TGG | - | chr5.3:18230825-18230844 | None:intergenic | 20.0% |
| !! | ATAAGTACTTATCATATAAG+TGG | - | chr5.3:18230745-18230764 | None:intergenic | 20.0% |
| !! | ATAATATAGTCAAACATGAA+AGG | - | chr5.3:18230496-18230515 | None:intergenic | 20.0% |
| !! | CATATGAATAAATTATAAGC+TGG | - | chr5.3:18231493-18231512 | None:intergenic | 20.0% |
| !!! | AAAATTCAACTTTTCCATTA+TGG | + | chr5.3:18228900-18228919 | MS.gene78953:intron | 20.0% |
| !!! | AAATTTTAAGTCTTGCTTTA+TGG | - | chr5.3:18230548-18230567 | None:intergenic | 20.0% |
| !!! | AACTGAAATTTTGTTTTAAC+AGG | + | chr5.3:18229943-18229962 | MS.gene78953:intron | 20.0% |
| !!! | ACTTTTTGCAAACATATTTT+TGG | + | chr5.3:18229506-18229525 | MS.gene78953:intron | 20.0% |
| !!! | AGATGTTTTTTATGTAAACT+GGG | + | chr5.3:18230287-18230306 | MS.gene78953:CDS | 20.0% |
| !!! | ATGTTTCTTTACATTTTAGT+TGG | + | chr5.3:18230825-18230844 | MS.gene78953:intron | 20.0% |
| !!! | CTTTTTTCATTTCTAAATTC+TGG | + | chr5.3:18228591-18228610 | MS.gene78953:intron | 20.0% |
| !!! | TGGTGCTTTAAATTTATTTA+TGG | + | chr5.3:18230932-18230951 | MS.gene78953:intron | 20.0% |
| !!! | TTTAGTTTTAAGATCATGAA+AGG | - | chr5.3:18231161-18231180 | None:intergenic | 20.0% |
| !!! | TTTATCTCTTGTTATAGAAA+TGG | + | chr5.3:18231531-18231550 | MS.gene78953:intron | 20.0% |
| !!! | TTTGCTGAAATGATTATTTT+TGG | + | chr5.3:18231252-18231271 | MS.gene78953:intron | 20.0% |
| ! | AAATGTAAAGAAACATTGGA+AGG | - | chr5.3:18230821-18230840 | None:intergenic | 25.0% |
| ! | AACTGAGATCAATATGAATT+TGG | - | chr5.3:18231027-18231046 | None:intergenic | 25.0% |
| ! | AATATGTAGATTGTAGTCTT+GGG | + | chr5.3:18229766-18229785 | MS.gene78953:intron | 25.0% |
| ! | ACTGAGATCAATATGAATTT+GGG | - | chr5.3:18231026-18231045 | None:intergenic | 25.0% |
| ! | ATATGAAGTACGTTATGTTT+GGG | + | chr5.3:18230895-18230914 | MS.gene78953:intron | 25.0% |
| ! | CAAGTTAATTAAACGCTTAT+AGG | + | chr5.3:18228975-18228994 | MS.gene78953:intron | 25.0% |
| ! | CAATAGTAGAAAACAAACTT+TGG | - | chr5.3:18230126-18230145 | None:intergenic | 25.0% |
| ! | CCTAAGTAAAACAAATTTCA+TGG | - | chr5.3:18228689-18228708 | None:intergenic | 25.0% |
| ! | CTAATAAACTAAACATGTCT+AGG | + | chr5.3:18230036-18230055 | MS.gene78953:intron | 25.0% |
| ! | CTATAACAATAGAGAAAGTA+TGG | + | chr5.3:18229038-18229057 | MS.gene78953:intron | 25.0% |
| ! | GAACAAATGAGAAAGATTAA+CGG | + | chr5.3:18230369-18230388 | MS.gene78953:CDS | 25.0% |
| ! | GTTAACATAAACAACCATAA+TGG | - | chr5.3:18228917-18228936 | None:intergenic | 25.0% |
| ! | TAATATGTAGATTGTAGTCT+TGG | + | chr5.3:18229765-18229784 | MS.gene78953:intron | 25.0% |
| ! | TATATGAAGTACGTTATGTT+TGG | + | chr5.3:18230894-18230913 | MS.gene78953:intron | 25.0% |
| ! | TCAAATAAGTTAATGCAAAC+AGG | - | chr5.3:18231349-18231368 | None:intergenic | 25.0% |
| ! | TGAATACACAAAAACAAAAG+AGG | - | chr5.3:18229924-18229943 | None:intergenic | 25.0% |
| ! | TTCACATTCAACACATAATT+TGG | - | chr5.3:18228939-18228958 | None:intergenic | 25.0% |
| !! | AGATGAATATCATGCTTTTA+CGG | + | chr5.3:18231323-18231342 | MS.gene78953:intron | 25.0% |
| !! | ATTGTTTTCATAAACTATCC+GGG | + | chr5.3:18229087-18229106 | MS.gene78953:intron | 25.0% |
| !! | CATTGTTTTCATAAACTATC+CGG | + | chr5.3:18229086-18229105 | MS.gene78953:intron | 25.0% |
| !! | CTAGACATGTTTAGTTTATT+AGG | - | chr5.3:18230038-18230057 | None:intergenic | 25.0% |
| !! | TTTTACAATTGATCAGATCA+AGG | + | chr5.3:18231894-18231913 | MS.gene78953:CDS | 25.0% |
| !!! | AAATTTTGTTTTAACAGGTC+AGG | + | chr5.3:18229948-18229967 | MS.gene78953:intron | 25.0% |
| !!! | ATCTCAGTAATCTTTTTTTC+TGG | + | chr5.3:18230232-18230251 | MS.gene78953:intron | 25.0% |
| !!! | ATTTCAGTTTTAGTGAGTAA+TGG | + | chr5.3:18228754-18228773 | MS.gene78953:intron | 25.0% |
| !!! | CAAAGTTTGTTTTCTACTAT+TGG | + | chr5.3:18230124-18230143 | MS.gene78953:intron | 25.0% |
| !!! | CCATGAAATTTGTTTTACTT+AGG | + | chr5.3:18228686-18228705 | MS.gene78953:intron | 25.0% |
| !!! | GAGATGTTTTTTATGTAAAC+TGG | + | chr5.3:18230286-18230305 | MS.gene78953:CDS | 25.0% |
| !!! | TGATTTTAGAATTCTTTCAG+CGG | - | chr5.3:18231746-18231765 | None:intergenic | 25.0% |
| AAGTTGAATGCTTACAGATA+TGG | + | chr5.3:18230689-18230708 | MS.gene78953:intron | 30.0% | |
| AATCTCACAAATGCTTATAC+CGG | - | chr5.3:18231381-18231400 | None:intergenic | 30.0% | |
| AGATTATATGAGAGAGCTTA+TGG | + | chr5.3:18231396-18231415 | MS.gene78953:intron | 30.0% | |
| AGGGTATGAATGAAAGTTTA+GGG | - | chr5.3:18230524-18230543 | None:intergenic | 30.0% | |
| CAAAATAATGCTCAATGAGA+TGG | - | chr5.3:18230441-18230460 | None:intergenic | 30.0% | |
| TAGAAGTCATAAGCTTAAAC+AGG | + | chr5.3:18229842-18229861 | MS.gene78953:CDS | 30.0% | |
| TGTATATATACGCACAGAAA+TGG | + | chr5.3:18230854-18230873 | MS.gene78953:intron | 30.0% | |
| TTAAGTCTTGCTTTATGGAA+GGG | - | chr5.3:18230543-18230562 | None:intergenic | 30.0% | |
| TTAGTAATCCATGGATCATA+GGG | + | chr5.3:18229551-18229570 | MS.gene78953:intron | 30.0% | |
| TTTAAGTCTTGCTTTATGGA+AGG | - | chr5.3:18230544-18230563 | None:intergenic | 30.0% | |
| ! | AAGGGTATGAATGAAAGTTT+AGG | - | chr5.3:18230525-18230544 | None:intergenic | 30.0% |
| ! | ACTTATTTGAGACTATCTAC+CGG | + | chr5.3:18231359-18231378 | MS.gene78953:intron | 30.0% |
| ! | CACAAATTTGTTTACACCAT+TGG | - | chr5.3:18230185-18230204 | None:intergenic | 30.0% |
| ! | TTGTTTTCATAAACTATCCG+GGG | + | chr5.3:18229088-18229107 | MS.gene78953:intron | 30.0% |
| !! | ACCATCGTTTTTACTTTCAT+CGG | + | chr5.3:18231061-18231080 | MS.gene78953:CDS | 30.0% |
| !! | ATGTTTGGGATATTCTTTTG+CGG | + | chr5.3:18230909-18230928 | MS.gene78953:intron | 30.0% |
| !! | CTTATTTCTATAAGTTTCCC+CGG | - | chr5.3:18229108-18229127 | None:intergenic | 30.0% |
| !!! | GATTTTAGAATTCTTTCAGC+GGG | - | chr5.3:18231745-18231764 | None:intergenic | 30.0% |
| !!! | TCTGCTATTTTTCTACTGTT+TGG | + | chr5.3:18228654-18228673 | MS.gene78953:intron | 30.0% |
| !!! | TGATTTTTGAAATGCAAGGT+AGG | - | chr5.3:18228531-18228550 | None:intergenic | 30.0% |
| !!! | TTCTTTACATTTTAGTTGGC+TGG | + | chr5.3:18230829-18230848 | MS.gene78953:intron | 30.0% |
| AAAAACATCTCCTGCACATT+AGG | - | chr5.3:18230277-18230296 | None:intergenic | 35.0% | |
| AAAGAGAAAAGCAGAATCTG+AGG | + | chr5.3:18231097-18231116 | MS.gene78953:CDS | 35.0% | |
| AAATGACTCATTTGCAGAAC+AGG | - | chr5.3:18231235-18231254 | None:intergenic | 35.0% | |
| AAGACAATACCTGAAGATGT+TGG | - | chr5.3:18231652-18231671 | None:intergenic | 35.0% | |
| AATAAGCTGTAAACAGCGAT+TGG | + | chr5.3:18229122-18229141 | MS.gene78953:intron | 35.0% | |
| AATGACTCATTTGCAGAACA+GGG | - | chr5.3:18231234-18231253 | None:intergenic | 35.0% | |
| AATGCTTACAGATATGGAGA+TGG | + | chr5.3:18230695-18230714 | MS.gene78953:intron | 35.0% | |
| ACACAAAAACAAAAGAGGCA+CGG | - | chr5.3:18229919-18229938 | None:intergenic | 35.0% | |
| ACTAAACATGTCTAGGTCTA+TGG | + | chr5.3:18230043-18230062 | MS.gene78953:intron | 35.0% | |
| AGACAATACCTGAAGATGTT+GGG | - | chr5.3:18231651-18231670 | None:intergenic | 35.0% | |
| AGACTGTTTGGAAGAACTTA+CGG | - | chr5.3:18229166-18229185 | None:intergenic | 35.0% | |
| AGATTCCCTTGGATTTAGTT+GGG | + | chr5.3:18231716-18231735 | MS.gene78953:CDS | 35.0% | |
| AGTAAGCTAAAAACAGCTCA+TGG | - | chr5.3:18231440-18231459 | None:intergenic | 35.0% | |
| AGTCTGATAAACAAAGACCT+GGG | + | chr5.3:18231191-18231210 | MS.gene78953:intron | 35.0% | |
| ATAGAATAGTGACCTGAACT+AGG | - | chr5.3:18231137-18231156 | None:intergenic | 35.0% | |
| ATCAACTGTCCTATATAAGC+AGG | + | chr5.3:18230618-18230637 | MS.gene78953:intron | 35.0% | |
| CAAGCTATACCTGCTTATAT+AGG | - | chr5.3:18230630-18230649 | None:intergenic | 35.0% | |
| CAGAAATGGTTTGATGCTTA+TGG | + | chr5.3:18230868-18230887 | MS.gene78953:intron | 35.0% | |
| CATATATGGGAAAAGAAGAG+TGG | + | chr5.3:18231684-18231703 | MS.gene78953:CDS | 35.0% | |
| CCTTGCATTTCAAAAATCAC+AGG | + | chr5.3:18228532-18228551 | MS.gene78953:CDS | 35.0% | |
| GGTGTAAACAAATTTGTGTG+TGG | + | chr5.3:18230187-18230206 | MS.gene78953:intron | 35.0% | |
| GTAAATGCTGCAAAGGAATA+TGG | + | chr5.3:18230411-18230430 | MS.gene78953:CDS | 35.0% | |
| GTAGAAAACAAACTTTGGCA+CGG | - | chr5.3:18230121-18230140 | None:intergenic | 35.0% | |
| GTTACAGATGATGACTTCTT+TGG | + | chr5.3:18231868-18231887 | MS.gene78953:CDS | 35.0% | |
| GTTAGTAATCCATGGATCAT+AGG | + | chr5.3:18229550-18229569 | MS.gene78953:intron | 35.0% | |
| TAAGACCAGGCTTCATATAT+GGG | + | chr5.3:18231671-18231690 | MS.gene78953:CDS | 35.0% | |
| TAGAATAGTGACCTGAACTA+GGG | - | chr5.3:18231136-18231155 | None:intergenic | 35.0% | |
| TATCCAAACATAACCTTAGC+AGG | + | chr5.3:18230790-18230809 | MS.gene78953:intron | 35.0% | |
| TGAAAAATCCCAACATCTTC+AGG | + | chr5.3:18231640-18231659 | MS.gene78953:intron | 35.0% | |
| TGCTTATATAGGACAGTTGA+TGG | - | chr5.3:18230619-18230638 | None:intergenic | 35.0% | |
| TGGATTACTAACACCACAAA+GGG | - | chr5.3:18229542-18229561 | None:intergenic | 35.0% | |
| TGGTTAAATATGTCCCTTTG+TGG | + | chr5.3:18229526-18229545 | MS.gene78953:intron | 35.0% | |
| TTAAGACCAGGCTTCATATA+TGG | + | chr5.3:18231670-18231689 | MS.gene78953:CDS | 35.0% | |
| ! | ATGGATTACTAACACCACAA+AGG | - | chr5.3:18229543-18229562 | None:intergenic | 35.0% |
| ! | TTGCTTCCTTTTTGCAATGT+GGG | + | chr5.3:18229246-18229265 | MS.gene78953:intron | 35.0% |
| ! | TTTGCTTCCTTTTTGCAATG+TGG | + | chr5.3:18229245-18229264 | MS.gene78953:intron | 35.0% |
| ! | TTTGTGGTGTTAGTAATCCA+TGG | + | chr5.3:18229542-18229561 | MS.gene78953:intron | 35.0% |
| !! | AGTTGTGAACTTTTGAGAGA+AGG | - | chr5.3:18228573-18228592 | None:intergenic | 35.0% |
| !! | CATCGTTTTTACTTTCATCG+GGG | + | chr5.3:18231063-18231082 | MS.gene78953:CDS | 35.0% |
| !! | CCATCGTTTTTACTTTCATC+GGG | + | chr5.3:18231062-18231081 | MS.gene78953:CDS | 35.0% |
| !!! | CCTGTGATTTTTGAAATGCA+AGG | - | chr5.3:18228535-18228554 | None:intergenic | 35.0% |
| !!! | TTTTTGAAATGCAAGGTAGG+TGG | - | chr5.3:18228528-18228547 | None:intergenic | 35.0% |
| AACTTAGAGCTTGGTTGGAT+TGG | - | chr5.3:18229226-18229245 | None:intergenic | 40.0% | |
| AAGACACTTGTGAGACTGTT+TGG | - | chr5.3:18229178-18229197 | None:intergenic | 40.0% | |
| AAGCTATCTTGGAGAGCTTA+TGG | - | chr5.3:18231464-18231483 | None:intergenic | 40.0% | |
| AATGAGAAAGATTAACGGCG+AGG | + | chr5.3:18230374-18230393 | MS.gene78953:CDS | 40.0% | |
| AGCAAAACTTAGAGCTTGGT+TGG | - | chr5.3:18229231-18229250 | None:intergenic | 40.0% | |
| AGGAAGCAAAACTTAGAGCT+TGG | - | chr5.3:18229235-18229254 | None:intergenic | 40.0% | |
| AGTAGAGCTAAAGCTGTATG+AGG | + | chr5.3:18231278-18231297 | MS.gene78953:intron | 40.0% | |
| ATCAGCCACAACATCTATAG+TGG | - | chr5.3:18229418-18229437 | None:intergenic | 40.0% | |
| ATCCATGAATCTGAGTAAGC+AGG | - | chr5.3:18229978-18229997 | None:intergenic | 40.0% | |
| CAACCTGCTAAGGTTATGTT+TGG | - | chr5.3:18230796-18230815 | None:intergenic | 40.0% | |
| CATGGATAGATCAGGTTACT+TGG | + | chr5.3:18229991-18230010 | MS.gene78953:CDS | 40.0% | |
| CATTTGCAGAACAGGGTATA+TGG | - | chr5.3:18231227-18231246 | None:intergenic | 40.0% | |
| CCCGATGAAAGTAAAAACGA+TGG | - | chr5.3:18231065-18231084 | None:intergenic | 40.0% | |
| CTATCCAAATTCCCTAGTTC+AGG | + | chr5.3:18231122-18231141 | MS.gene78953:CDS | 40.0% | |
| CTCAGATTCATGGATAGATC+AGG | + | chr5.3:18229983-18230002 | MS.gene78953:CDS | 40.0% | |
| GAGATTCCCTTGGATTTAGT+TGG | + | chr5.3:18231715-18231734 | MS.gene78953:CDS | 40.0% | |
| GAGTCTGATAAACAAAGACC+TGG | + | chr5.3:18231190-18231209 | MS.gene78953:intron | 40.0% | |
| GATCAGGTTACTTGGATTTC+AGG | + | chr5.3:18229999-18230018 | MS.gene78953:CDS | 40.0% | |
| GATTCCCTTGGATTTAGTTG+GGG | + | chr5.3:18231717-18231736 | MS.gene78953:CDS | 40.0% | |
| GGCTGATGTTATAAGCGAAA+AGG | + | chr5.3:18229431-18229450 | MS.gene78953:CDS | 40.0% | |
| GTCTGATAAACAAAGACCTG+GGG | + | chr5.3:18231192-18231211 | MS.gene78953:intron | 40.0% | |
| TATATGGAGTTTACAACCCC+AGG | - | chr5.3:18231211-18231230 | None:intergenic | 40.0% | |
| TATGGGAAAAGAAGAGTGGA+TGG | + | chr5.3:18231688-18231707 | MS.gene78953:CDS | 40.0% | |
| TCAAGACCCACATTGCAAAA+AGG | - | chr5.3:18229255-18229274 | None:intergenic | 40.0% | |
| TCGTATCTCACTTGATCCAA+TGG | + | chr5.3:18230166-18230185 | MS.gene78953:intron | 40.0% | |
| TGAATTTGGGAATTCCTGCA+AGG | - | chr5.3:18231013-18231032 | None:intergenic | 40.0% | |
| TGGATCAAGTGAGATACGAT+GGG | - | chr5.3:18230165-18230184 | None:intergenic | 40.0% | |
| TTGGATCAAGTGAGATACGA+TGG | - | chr5.3:18230166-18230185 | None:intergenic | 40.0% | |
| ! | ATGTAGATTGTAGTCTTGGG+AGG | + | chr5.3:18229769-18229788 | MS.gene78953:intron | 40.0% |
| ! | CTTTTCCCATATATGAAGCC+TGG | - | chr5.3:18231679-18231698 | None:intergenic | 40.0% |
| ! | GCTGGTTTCATAAGCTATCT+TGG | - | chr5.3:18231475-18231494 | None:intergenic | 40.0% |
| ! | GTTGCATTGGCAGTTATCAA+TGG | + | chr5.3:18231844-18231863 | MS.gene78953:CDS | 40.0% |
| ! | TCAGGTATTGTCTTAAGACC+AGG | + | chr5.3:18231658-18231677 | MS.gene78953:intron | 40.0% |
| ! | TCCTGCTTCTGATCTACTTT+TGG | + | chr5.3:18231798-18231817 | MS.gene78953:CDS | 40.0% |
| !! | CAGTGTTGATGATGTTGCAT+TGG | + | chr5.3:18231831-18231850 | MS.gene78953:CDS | 40.0% |
| !! | GTTGTTATGTGCTGGTTACA+AGG | + | chr5.3:18230575-18230594 | MS.gene78953:intron | 40.0% |
| !! | TTTGGGATATTCTTTTGCGG+TGG | + | chr5.3:18230912-18230931 | MS.gene78953:intron | 40.0% |
| ACATCATCAACACTGACAGG+TGG | - | chr5.3:18231826-18231845 | None:intergenic | 45.0% | |
| AGGAAGCTGCTGATAAGGTA+AGG | + | chr5.3:18231914-18231933 | MS.gene78953:CDS | 45.0% | |
| ATCTTCCTCCCTATGATCCA+TGG | - | chr5.3:18229562-18229581 | None:intergenic | 45.0% | |
| CAAGTGAGATACGATGGGAT+GGG | - | chr5.3:18230160-18230179 | None:intergenic | 45.0% | |
| CAGTGTTATGCCTAATGTGC+AGG | + | chr5.3:18230264-18230283 | MS.gene78953:intron | 45.0% | |
| CCAGTCGCATGAGTATCAAT+AGG | - | chr5.3:18229609-18229628 | None:intergenic | 45.0% | |
| CCTATTGATACTCATGCGAC+TGG | + | chr5.3:18229606-18229625 | MS.gene78953:intron | 45.0% | |
| CCTGCAAGGTAAAAGAACAG+TGG | - | chr5.3:18230999-18231018 | None:intergenic | 45.0% | |
| CGTTTGAGAGAGAAAACGGT+GGG | - | chr5.3:18228489-18228508 | None:intergenic | 45.0% | |
| GACGTCCACTATAGATGTTG+TGG | + | chr5.3:18229410-18229429 | MS.gene78953:CDS | 45.0% | |
| GATCAAGGAAGCTGCTGATA+AGG | + | chr5.3:18231909-18231928 | MS.gene78953:CDS | 45.0% | |
| GCAACATCATCAACACTGAC+AGG | - | chr5.3:18231829-18231848 | None:intergenic | 45.0% | |
| GCACGGAAGAGACAAATAGA+TGG | - | chr5.3:18229902-18229921 | None:intergenic | 45.0% | |
| GCCAAAAGTAGATCAGAAGC+AGG | - | chr5.3:18231802-18231821 | None:intergenic | 45.0% | |
| GCTTATGACTTCTATGCCCT+TGG | - | chr5.3:18229836-18229855 | None:intergenic | 45.0% | |
| GGAAGCTGCTGATAAGGTAA+GGG | + | chr5.3:18231915-18231934 | MS.gene78953:CDS | 45.0% | |
| GGGTCGTTTGAGAGAGAAAA+CGG | - | chr5.3:18228493-18228512 | None:intergenic | 45.0% | |
| GTAATCCATGGATCATAGGG+AGG | + | chr5.3:18229554-18229573 | MS.gene78953:intron | 45.0% | |
| GTCCTGCTTACTCAGATTCA+TGG | + | chr5.3:18229973-18229992 | MS.gene78953:CDS | 45.0% | |
| GTGACCTGAACTAGGGAATT+TGG | - | chr5.3:18231129-18231148 | None:intergenic | 45.0% | |
| TCAAGTGAGATACGATGGGA+TGG | - | chr5.3:18230161-18230180 | None:intergenic | 45.0% | |
| TCGTTTGAGAGAGAAAACGG+TGG | - | chr5.3:18228490-18228509 | None:intergenic | 45.0% | |
| TGAGACGTGAATAGCACATC+TGG | - | chr5.3:18230974-18230993 | None:intergenic | 45.0% | |
| TGTGGCTGTAAATGCTGCAA+AGG | + | chr5.3:18230404-18230423 | MS.gene78953:CDS | 45.0% | |
| ! | ATTGTAGTCTTGGGAGGCAA+TGG | + | chr5.3:18229775-18229794 | MS.gene78953:CDS | 45.0% |
| ! | CCACTGTTCTTTTACCTTGC+AGG | + | chr5.3:18230996-18231015 | MS.gene78953:intron | 45.0% |
| ! | TTGTAGTCTTGGGAGGCAAT+GGG | + | chr5.3:18229776-18229795 | MS.gene78953:CDS | 45.0% |
| !! | TGTTGGTTCTGCGATATGCA+AGG | + | chr5.3:18229801-18229820 | MS.gene78953:CDS | 45.0% |
| !! | TTGAGAGCGTTGTTATGTGC+TGG | + | chr5.3:18230567-18230586 | MS.gene78953:intron | 45.0% |
| !!! | GGAGCAGGTGTTGGTAATTT+TGG | + | chr5.3:18229381-18229400 | MS.gene78953:CDS | 45.0% |
| !!! | GGATGGTTTTGAGATTCCCT+TGG | + | chr5.3:18231705-18231724 | MS.gene78953:CDS | 45.0% |
| AAAACGGTGGGAATGAGACG+AGG | - | chr5.3:18228477-18228496 | None:intergenic | 50.0% | |
| ACTGCAGTAGTCTCAACCCT+CGG | + | chr5.3:18230330-18230349 | MS.gene78953:CDS | 50.0% | |
| AGTTATGCAGGAGCAGGTGT+TGG | + | chr5.3:18229372-18229391 | MS.gene78953:CDS | 50.0% | |
| ATGAGACGAGGAGAAACAGC+AGG | - | chr5.3:18228465-18228484 | None:intergenic | 50.0% | |
| ATGCAAGGCAGCAGTATCCA+AGG | + | chr5.3:18229816-18229835 | MS.gene78953:CDS | 50.0% | |
| CTGTATGAGGATCCAGCAAC+AGG | + | chr5.3:18231291-18231310 | MS.gene78953:intron | 50.0% | |
| GCAGCTAACTGCAAATCTGC+AGG | - | chr5.3:18229352-18229371 | None:intergenic | 50.0% | |
| GCAGTTAGCTGCAGTTATGC+AGG | + | chr5.3:18229360-18229379 | MS.gene78953:CDS | 50.0% | |
| GGCTCCCCAACTAAATCCAA+GGG | - | chr5.3:18231724-18231743 | None:intergenic | 50.0% | |
| GTAGGTGGAGTGTGAGTGAA+GGG | - | chr5.3:18228513-18228532 | None:intergenic | 50.0% | |
| TAACGGCGAGGCTAATGTTG+TGG | + | chr5.3:18230386-18230405 | MS.gene78953:CDS | 50.0% | |
| TCTTCCACAACTCCTGTTGC+TGG | - | chr5.3:18231306-18231325 | None:intergenic | 50.0% | |
| TGAGACGAGGAGAAACAGCA+GGG | - | chr5.3:18228464-18228483 | None:intergenic | 50.0% | |
| TGCAAGGCAGCAGTATCCAA+GGG | + | chr5.3:18229817-18229836 | MS.gene78953:CDS | 50.0% | |
| ! | AACTGGGACGAAGTACTTCC+TGG | + | chr5.3:18230303-18230322 | MS.gene78953:CDS | 50.0% |
| ! | CTTTCATCGGGGTACTTCAC+AGG | + | chr5.3:18231074-18231093 | MS.gene78953:CDS | 50.0% |
| ! | GAAGCAGGAAGTGCGCTTAA+TGG | - | chr5.3:18231787-18231806 | None:intergenic | 50.0% |
| ! | TTGGAAGGTGCAACCTGCTA+AGG | - | chr5.3:18230806-18230825 | None:intergenic | 50.0% |
| ! | TTGGGAGGCAATGGGTTTGT+TGG | + | chr5.3:18229784-18229803 | MS.gene78953:CDS | 50.0% |
| AGCTGCAGTTATGCAGGAGC+AGG | + | chr5.3:18229366-18229385 | MS.gene78953:CDS | 55.0% | |
| CTCGCTACCAAAACCTCCGA+GGG | - | chr5.3:18230349-18230368 | None:intergenic | 55.0% | |
| GAGACTACTGCAGTAGCTCC+AGG | - | chr5.3:18230324-18230343 | None:intergenic | 55.0% | |
| GGATCCAGCAACAGGAGTTG+TGG | + | chr5.3:18231299-18231318 | MS.gene78953:intron | 55.0% | |
| GGGCTCCCCAACTAAATCCA+AGG | - | chr5.3:18231725-18231744 | None:intergenic | 55.0% | |
| GGTAGGTGGAGTGTGAGTGA+AGG | - | chr5.3:18228514-18228533 | None:intergenic | 55.0% | |
| ! | GTCTCAACCCTCGGAGGTTT+TGG | + | chr5.3:18230339-18230358 | MS.gene78953:CDS | 55.0% |
| CCTCGCTACCAAAACCTCCG+AGG | - | chr5.3:18230350-18230369 | None:intergenic | 60.0% | |
| GCAGTAGTCTCAACCCTCGG+AGG | + | chr5.3:18230333-18230352 | MS.gene78953:CDS | 60.0% | |
| !!! | CCTCGGAGGTTTTGGTAGCG+AGG | + | chr5.3:18230347-18230366 | MS.gene78953:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 18228441 | 18231942 | 18228441 | ID=MS.gene78953 |
| chr5.3 | mRNA | 18228441 | 18231942 | 18228441 | ID=MS.gene78953.t1;Parent=MS.gene78953 |
| chr5.3 | exon | 18228441 | 18228553 | 18228441 | ID=MS.gene78953.t1.exon1;Parent=MS.gene78953.t1 |
| chr5.3 | CDS | 18228441 | 18228553 | 18228441 | ID=cds.MS.gene78953.t1;Parent=MS.gene78953.t1 |
| chr5.3 | exon | 18229356 | 18229452 | 18229356 | ID=MS.gene78953.t1.exon2;Parent=MS.gene78953.t1 |
| chr5.3 | CDS | 18229356 | 18229452 | 18229356 | ID=cds.MS.gene78953.t1;Parent=MS.gene78953.t1 |
| chr5.3 | exon | 18229775 | 18229863 | 18229775 | ID=MS.gene78953.t1.exon3;Parent=MS.gene78953.t1 |
| chr5.3 | CDS | 18229775 | 18229863 | 18229775 | ID=cds.MS.gene78953.t1;Parent=MS.gene78953.t1 |
| chr5.3 | exon | 18229965 | 18230020 | 18229965 | ID=MS.gene78953.t1.exon4;Parent=MS.gene78953.t1 |
| chr5.3 | CDS | 18229965 | 18230020 | 18229965 | ID=cds.MS.gene78953.t1;Parent=MS.gene78953.t1 |
| chr5.3 | exon | 18230286 | 18230432 | 18230286 | ID=MS.gene78953.t1.exon5;Parent=MS.gene78953.t1 |
| chr5.3 | CDS | 18230286 | 18230432 | 18230286 | ID=cds.MS.gene78953.t1;Parent=MS.gene78953.t1 |
| chr5.3 | exon | 18231018 | 18231143 | 18231018 | ID=MS.gene78953.t1.exon6;Parent=MS.gene78953.t1 |
| chr5.3 | CDS | 18231018 | 18231143 | 18231018 | ID=cds.MS.gene78953.t1;Parent=MS.gene78953.t1 |
| chr5.3 | exon | 18231662 | 18231942 | 18231662 | ID=MS.gene78953.t1.exon7;Parent=MS.gene78953.t1 |
| chr5.3 | CDS | 18231662 | 18231942 | 18231662 | ID=cds.MS.gene78953.t1;Parent=MS.gene78953.t1 |
| Gene Sequence |
| Protein sequence |
