AlfalfaGEDB | MS.gene052503

M. sativa cultivar XinJiangDaYe / MS.gene052503

KEGG: -
GO: GO:0003674 GO:0003824 GO:0005488 GO:0005506 GO:0008150 GO:0008152 GO:0016491 GO:0016705 GO:0020037 GO:0043167 GO:0043169 GO:0046872 GO:0046906 GO:0046914 GO:0048037 GO:0055114 GO:0097159 GO:1901363
PFAM: PF00067.25

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene052503.t1	XP_013457072.1	87	523	63	3	1	519	1	522	8.40E-265	922.5

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene052503.t1	P37118	54.1	495	220	6	24	513	11	503	2.1e-147	523.9

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene052503.t1	A0A072UPV2	87.0	523	63	3	1	519	1	522	6.1e-265	922.5

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049137	MS.gene052503	0.869597	2.75E-66	-1.69E-46
MS.gene049171	MS.gene052503	0.907006	8.07E-81	-1.69E-46
MS.gene049173	MS.gene052503	0.824518	7.73E-54	-1.69E-46
MS.gene049217	MS.gene052503	0.862425	5.11E-64	-1.69E-46
MS.gene049222	MS.gene052503	0.899192	2.53E-77	-1.69E-46
MS.gene049232	MS.gene052503	0.854985	8.54E-62	-1.69E-46
MS.gene049285	MS.gene052503	0.889997	1.47E-73	-1.69E-46
MS.gene049320	MS.gene052503	0.882581	9.24E-71	-1.69E-46
MS.gene04939	MS.gene052503	0.811504	6.77E-51	-1.69E-46
MS.gene049396	MS.gene052503	0.800232	1.59E-48	-1.69E-46

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PPI:

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Gene1	Gene2	Type
MS.gene00054	MS.gene052503	PPI
MS.gene00055	MS.gene052503	PPI
MS.gene00056	MS.gene052503	PPI
MS.gene003430	MS.gene052503	PPI
MS.gene008145	MS.gene052503	PPI
MS.gene008451	MS.gene052503	PPI
MS.gene008452	MS.gene052503	PPI
MS.gene008464	MS.gene052503	PPI
MS.gene008465	MS.gene052503	PPI
MS.gene008470	MS.gene052503	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene052503.t1	MTR_4g089025	88.145	523	57	3	1	519	1	522	0.0	956
MS.gene052503.t1	MTR_4g089030	83.716	522	81	3	1	519	1	521	0.0	905
MS.gene052503.t1	MTR_4g089020	79.840	501	95	4	19	518	1	496	0.0	824
MS.gene052503.t1	MTR_4g089055	77.099	524	110	6	1	519	1	519	0.0	813
MS.gene052503.t1	MTR_4g104610	62.200	500	179	3	20	513	1	496	0.0	659
MS.gene052503.t1	MTR_4g104550	61.795	479	178	3	36	513	17	491	0.0	631
MS.gene052503.t1	MTR_0022s0290	57.988	507	202	5	19	515	12	517	0.0	614
MS.gene052503.t1	MTR_4g104540	61.839	435	158	5	83	515	1	429	0.0	558
MS.gene052503.t1	MTR_3g076530	46.787	498	250	5	26	515	13	503	9.81e-166	479
MS.gene052503.t1	MTR_4g104660	45.214	491	260	4	26	508	18	507	2.26e-155	453

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene052503.t1	AT3G48270	50.320	469	221	4	46	513	29	486	6.18e-179	512
MS.gene052503.t1	AT3G48280	48.571	490	238	5	27	515	12	488	7.40e-177	507
MS.gene052503.t1	AT3G48310	50.641	468	219	5	47	513	31	487	8.50e-176	504
MS.gene052503.t1	AT3G48300	51.828	465	208	6	50	513	31	480	1.24e-175	503
MS.gene052503.t1	AT3G48300	51.828	465	208	6	50	513	33	482	1.33e-175	503
MS.gene052503.t1	AT3G48290	51.282	468	216	5	47	513	32	488	3.23e-175	503
MS.gene052503.t1	AT3G48290	48.583	494	216	6	47	513	32	514	2.40e-169	489
MS.gene052503.t1	AT3G48320	48.008	502	244	7	14	513	1	487	1.62e-166	481
MS.gene052503.t1	AT4G13310	47.771	471	236	5	47	513	31	495	2.25e-159	462
MS.gene052503.t1	AT5G24950	46.203	474	246	4	40	510	24	491	6.04e-159	461

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Find 113 sgRNAs with CRISPR-Local

Find 227 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACATACCGTGAAGGAAA+AGG	0.508307	4.3:-23791352	MS.gene052503:CDS
AAAGTATGGAGTGTGCGGTA+AGG	0.579941	4.3:+23791766	None:intergenic
AAATTGCCGGATGGAGTAGC+AGG	0.465508	4.3:-23789088	MS.gene052503:CDS
AACAACTCAGTTAAATTTAA+CGG	0.382999	4.3:+23791418	None:intergenic
AACAGTTCAATAGATTTCAA+AGG	0.530471	4.3:-23789226	MS.gene052503:CDS
AACGGCTATGACATTGAAGC+TGG	0.527947	4.3:-23789337	MS.gene052503:CDS
AAGAAAAGAGAAAGAAATAG+TGG	0.439676	4.3:+23791892	None:intergenic
AAGAGAACTCGGCAGAAAGG+TGG	0.610724	4.3:+23791963	None:intergenic
AAGATAGTGAAGAACAACAT+AGG	0.521773	4.3:+23791916	None:intergenic
AAGGAAAGACACCAAGTTGA+TGG	0.446142	4.3:+23791785	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAGATAGTGAAGAACAACAT+AGG	+	chr4.3:23789048-23789067	None:intergenic	30.0%
AAGGTAAGACATTTCAAGAA+TGG	-	chr4.3:23789628-23789647	MS.gene052503:intron	30.0%
ACAGGTAATAATCAATGCTT+GGG	-	chr4.3:23791650-23791669	MS.gene052503:CDS	30.0%
ACCTTGTTCATCAATATGAT+TGG	-	chr4.3:23791850-23791869	MS.gene052503:CDS	30.0%
AGATAGTGAAGAACAACATA+GGG	+	chr4.3:23789047-23789066	None:intergenic	30.0%
ATCTTGCAATTTATGCATCA+CGG	+	chr4.3:23791451-23791470	None:intergenic	30.0%
ATTCTATGCACGATATGAAT+TGG	+	chr4.3:23790446-23790465	None:intergenic	30.0%
ATTTCATGTGAAAGAGAACT+CGG	+	chr4.3:23789012-23789031	None:intergenic	30.0%
CAGAAATAGGTGTAAACAAA+GGG	+	chr4.3:23790065-23790084	None:intergenic	30.0%
CCTGCTATAAAAACCATTTA+CGG	+	chr4.3:23789727-23789746	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4.3	gene	23788994	23791989	23788994	ID=MS.gene052503
chr4.3	mRNA	23788994	23791989	23788994	ID=MS.gene052503.t1;Parent=MS.gene052503
chr4.3	exon	23791048	23791989	23791048	ID=MS.gene052503.t1.exon1;Parent=MS.gene052503.t1
chr4.3	CDS	23791048	23791989	23791048	ID=cds.MS.gene052503.t1;Parent=MS.gene052503.t1
chr4.3	exon	23788994	23789611	23788994	ID=MS.gene052503.t1.exon2;Parent=MS.gene052503.t1
chr4.3	CDS	23788994	23789611	23788994	ID=cds.MS.gene052503.t1;Parent=MS.gene052503.t1

Gene Sequence

>MS.gene052503

ATGTCCACCTTTCTGCCGAGTTCTCTTTCACATGAAATCTTCTCTTCATTCCCTATGTTGTTCTTCACTATCTTTCCACTATTTCTTTCTCTTTTCTTCATCATCAAATGGTATTTTAATAACTCTGTCACCACAAAAAACTTACCTCCTTCACCTCCAAGAATTCCTCTACTTGGTAACCTCCATCAACTTGGTGTCTTTCCTTACCGCACACTCCATACTTTATCTCACAAATATGGCCCTTTAATGCTTCTTTATTTTGGGAAGGTTCCAGTACTTGTAATTTCCTCTGCTGATGCAGCAAGAAAAGTAATGAAAACTCATGATTTGGTTTTCTCTGATAGACCACATCGTAAAATAAATGATATACTTTTGTATGGTTCCAAAGATATGGCAAGTTGTGGATATGGTGAATATTGGAGGCAATTAAGGAGTCTAAGTGTGTTACACATCTTGAGTAACAAAAGAGTTCAATCTTATCATCGTGTCAGAGAGGAAGAAACTTTAAGAATGATGGATCATATTAAGCAGCATTGTTCTTCTGCGTCGCCGTTAAATTTAACTGAGTTGTTCTCCACAATTACTAATGACATAGTATGTAGGGTGGCACTTGGAAAAACATACCGTGAAGGAAAAGGTAAGACATTTCAAGAATGGTTGTTGGAGTTTGGAGAGTTATTAGGCACTGTATGTATAGGAGATTATATACCTTGGCTTGATTGGTTGGGAACCGTAAATGGTTTTTATAGCAGGGCACAAAAATGTGCCAAAAATTTGGATGAGTTTATAGAACAAGTAATCGAGGACCACATTAGTCGTAGATCTGTTGGAGATGTTGAAAATGAGGAGCATAGTGATTTTGTGGATGTTTTACTTTCACTTCAAAAGACTAATGCTATTGGCTTTCCCATTGATAGAACTGCAATCAAGGCTTTGATACTGGTAAGGCCTGGTTTTTCATATATGTTTTACAGTTTATTCTTTGGCTAGGCCTGGTTTTTGGAGGTTTCATTCTTTTGTTGCATATTTATTGCTCTAGCATATGGTGGATTGAATTTTTTTTTTCTTCCCTTTGTTTACACCTATTTCTGGGGTTGATCTTGTTTCTCAATGATCAGCAAGCAACTTAAGGAAATTTAATTAGACAAATTAACTTTTTTTTTGAAAGGAATTAGACAAATTAACTTGTTCATAGTAAATTTGATACTTTGGTTCCTATGATGATATGATCTGAAAATTATGATAAAGAAAATAAGTTTCAATTGCAGGAATTTGCTGCTTAGGTATGTACATATGCTTTTTTTTGTTGATCAAGAAAGGTAGGTACATATGCTAACTACTAGCTAGGGGTGGAGAGAAGCAGATATTAATATTAGAGTTGGTTATACAGTTATTAAAATCCCGATTTAAATTCCAAAATCGTTGAGTTTACGATTTTATTGAGCCTCGCCAATTCATATCGTGCATAGAATCCCGATTTAGTGTTACGGACTTGGACGCTTGGCCCAAAACTAGTGCAAATGACGCTTAAATATTTTATTTTTGTAAAAAATAACTTTTTTCTAACCACACTCCCATTTTCTACAAAAATACCCTATTTTTTTAAGCACATCCACTCTCTCTCTCTCTCTCTTATTTTTTTTCTGTCGAAAATGACCCTTATTAATTCTAGTATCACTATGCATATATATACTAATATTTTTTCTTGCTCTTAAGGCATTGGCTAAATAACAAATATATAAATATTATGTTAAAAAGTGGTGCATTCAACTTTTTAGAAGTTTATAACATTCTATGTTTTCAATGCAAAGTTACTATTTTCAGTTTCCTTAACAAATAACATGACCCTATTTTTTTTTTTTTTTTGATGGGATCATTTGATCTTGGTTGCGATCCTATGATTTACAATCTTGCTATCCCTTTCGATCTTATGCAAGATCTCGATCCTAACAACCTTTATAAATAGTTACAACTTACAAGTTAGTTAGTATTTTTTTTTCTTTTCGAAATTTCGATATCCGATCCAAAAATCGACTAATCCAAGGGGACCAATCCGACCGTTCACTTGCGGGAGCCCTATTTAAAGCCAAAGCAAAACTCTGTATGGACTTGTACACCAAAATTTGCACTAAGGAGAATTGAACCTGAGACCTTGAGAGGAGCAAACTCCAAGATCTCAAGCCAACCACTAGGCAAACCACAAGTTAGTTAGTATTAATTACAAGTTGGTTAAGATTTGTTAGCTTAGTTAGGATCACTGTATATAGTGTGTCTTATACTTATTGTAATTAACTTTTTTCATTCTCTCAATTCCAAATGATCAATCTTTGGAAGAAGCTAATATAATTAAATTTTGCTTTCCCCCTGCATGTATGTAGGACATGTTTGCCGCAGGTACTGATACTACCTACACAGTCTTAGAATGGGCAATGGCAGAACTGTTAAGACACCAAACCGTGATGCATAAATTGCAAGATGAGGTGAGAACTGTAGTTGGTAACAGAACTCATGTAACTGAAGAGGATTTGGTTAACATGAACTACTTGAAAGCTGTGATTAAAGAAACTCTTCGACTGCATGTCCCGATTCCATTATTAGTCCCTCGGAAATCAATGGAAGATATCAAACTAAACGGCTATGACATTGAAGCTGGAACACAGGTAATAATCAATGCTTGGGCTATTGCAAGAGACCCTTCAAGTTGGGAAGAACCTCTAGAGTTTAAACCAGAAAGGTTTATGAACAGTTCAATAGATTTCAAAGGATTGGATTTTGAACTTATTCCATTTGGAGCAGGAAGGAGAGGTTGTCCTGGAGTGTTGTTTGCTGTTGCAGTGAATGAATTGGTGCTAGCAAACCTTGTTCATCAATATGATTGGAAATTGCCGGATGGAGTAGCAGGGAAAGATTTGGACATGTCTGAAACTGTTGGCCTTGCATGTCATAGAAAATATCCTCTCCTTGCAGTAGCTACCAAATATGACAGAAATGAATGA

Protein sequence

>MS.gene052503.t1

MSTFLPSSLSHEIFSSFPMLFFTIFPLFLSLFFIIKWYFNNSVTTKNLPPSPPRIPLLGNLHQLGVFPYRTLHTLSHKYGPLMLLYFGKVPVLVISSADAARKVMKTHDLVFSDRPHRKINDILLYGSKDMASCGYGEYWRQLRSLSVLHILSNKRVQSYHRVREEETLRMMDHIKQHCSSASPLNLTELFSTITNDIVCRVALGKTYREGKGKTFQEWLLEFGELLGTVCIGDYIPWLDWLGTVNGFYSRAQKCAKNLDEFIEQVIEDHISRRSVGDVENEEHSDFVDVLLSLQKTNAIGFPIDRTAIKALILDMFAAGTDTTYTVLEWAMAELLRHQTVMHKLQDEVRTVVGNRTHVTEEDLVNMNYLKAVIKETLRLHVPIPLLVPRKSMEDIKLNGYDIEAGTQVIINAWAIARDPSSWEEPLEFKPERFMNSSIDFKGLDFELIPFGAGRRGCPGVLFAVAVNELVLANLVHQYDWKLPDGVAGKDLDMSETVGLACHRKYPLLAVATKYDRNE